AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1329820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329820 MtrunA17_Chr4g0059971 97.655 597 14 0 1 597 1 597 0.0 1205
Msa1329820 MtrunA17_Chr4g0059991 69.244 569 173 2 18 584 5 573 0.0 853
Msa1329820 MtrunA17_Chr4g0059981 68.557 582 181 2 10 590 7 587 0.0 843
Msa1329820 MtrunA17_Chr5g0415791 48.700 577 274 8 14 584 17 577 0.0 553
Msa1329820 MtrunA17_Chr8g0362781 40.901 577 326 7 17 584 11 581 1.83e-157 464
Msa1329820 MtrunA17_Chr8g0362801 46.908 469 235 6 122 584 1 461 6.67e-150 440
Msa1329820 MtrunA17_Chr4g0060001 40.876 548 307 7 39 581 34 569 6.11e-147 437
Msa1329820 MtrunA17_Chr8g0390331 39.071 581 338 8 18 596 2 568 3.61e-140 419
Msa1329820 MtrunA17_Chr7g0255621 37.847 576 341 9 15 584 1 565 8.13e-138 414
Msa1329820 MtrunA17_Chr7g0240281 39.362 564 322 7 39 593 29 581 6.16e-135 406
Msa1329820 MtrunA17_Chr7g0255601 38.462 585 330 14 15 584 3 572 6.74e-134 404
Msa1329820 MtrunA17_Chr7g0240271 36.888 572 338 8 16 579 9 565 8.61e-134 403
Msa1329820 MtrunA17_Chr5g0422881 36.851 578 344 7 10 585 7 565 3.91e-133 401
Msa1329820 MtrunA17_Chr2g0331511 37.435 577 336 8 15 581 1 562 5.06e-131 397
Msa1329820 MtrunA17_Chr7g0241741 37.500 552 332 7 40 590 28 567 6.87e-131 395
Msa1329820 MtrunA17_Chr3g0104011 35.945 587 351 7 7 589 3 568 1.79e-130 394
Msa1329820 MtrunA17_Chr4g0005901 36.007 586 338 9 6 585 18 572 1.82e-129 391
Msa1329820 MtrunA17_Chr8g0375311 36.380 547 338 5 40 585 46 583 7.74e-129 390
Msa1329820 MtrunA17_Chr8g0375291 36.189 572 345 7 16 576 12 574 1.18e-128 390
Msa1329820 MtrunA17_Chr4g0003761 36.097 579 357 10 18 593 13 581 2.33e-128 389
Msa1329820 MtrunA17_Chr2g0331521 37.943 564 320 10 30 581 18 563 7.53e-128 388
Msa1329820 MtrunA17_Chr8g0375351 35.800 581 359 8 5 582 11 580 1.18e-126 384
Msa1329820 MtrunA17_Chr1g0147631 38.504 548 319 9 39 581 30 564 5.23e-126 383
Msa1329820 MtrunA17_Chr1g0157601 36.106 565 347 8 18 581 2 553 1.19e-125 381
Msa1329820 MtrunA17_Chr7g0255611 34.524 588 362 10 3 584 4 574 6.27e-124 378
Msa1329820 MtrunA17_Chr8g0375321 35.478 575 347 8 16 582 19 577 1.98e-123 376
Msa1329820 MtrunA17_Chr8g0375341 34.412 587 365 6 5 585 11 583 2.30e-122 374
Msa1329820 MtrunA17_Chr3g0142091 36.298 551 330 5 39 587 31 562 1.15e-121 371
Msa1329820 MtrunA17_Chr2g0331481 37.168 565 343 8 20 581 11 566 5.65e-120 369
Msa1329820 MtrunA17_Chr8g0375331 35.456 581 351 8 13 585 3 567 5.68e-119 364
Msa1329820 MtrunA17_Chr5g0415841 39.440 464 269 8 125 584 4 459 1.21e-118 360
Msa1329820 MtrunA17_Chr2g0331471 36.898 561 342 8 24 581 78 629 2.09e-118 367
Msa1329820 MtrunA17_Chr1g0157611 36.396 566 343 9 21 581 1 554 2.72e-118 362
Msa1329820 MtrunA17_Chr2g0331461 38.053 565 338 8 20 581 11 566 4.53e-118 364
Msa1329820 MtrunA17_Chr8g0375361 35.935 551 335 8 40 585 45 582 1.37e-117 361
Msa1329820 MtrunA17_Chr3g0142101 34.083 578 351 11 17 585 11 567 2.39e-116 358
Msa1329820 MtrunA17_Chr1g0177591 35.284 581 346 11 3 581 12 564 7.69e-114 351
Msa1329820 MtrunA17_Chr5g0399061 35.027 551 345 7 39 585 32 573 2.17e-112 348
Msa1329820 MtrunA17_Chr1g0157621 36.053 527 327 6 55 581 1 517 1.30e-111 345
Msa1329820 MtrunA17_Chr4g0008651 33.333 585 357 10 18 585 2 570 1.15e-109 341
Msa1329820 MtrunA17_Chr7g0261811 32.712 590 366 10 14 590 2 573 7.26e-109 339
Msa1329820 MtrunA17_Chr5g0400371 32.594 586 379 9 3 582 81 656 9.67e-108 338
Msa1329820 MtrunA17_Chr7g0240211 37.365 463 270 7 125 579 4 454 5.08e-107 330
Msa1329820 MtrunA17_Chr7g0240181 37.365 463 270 7 125 579 4 454 6.78e-107 330
Msa1329820 MtrunA17_Chr7g0235521 37.365 463 270 7 125 579 4 454 1.20e-106 329
Msa1329820 MtrunA17_Chr7g0261771 33.571 560 352 8 40 594 37 581 1.55e-106 333
Msa1329820 MtrunA17_Chr7g0240131 37.149 463 271 7 125 579 4 454 2.07e-105 326
Msa1329820 MtrunA17_Chr3g0112671 33.106 586 361 10 3 584 2 560 2.75e-105 329
Msa1329820 MtrunA17_Chr5g0439381 33.739 575 343 7 23 584 7 556 1.13e-104 328
Msa1329820 MtrunA17_Chr3g0112611 34.375 576 349 9 25 584 7 569 1.41e-104 328
Msa1329820 MtrunA17_Chr5g0399071 32.971 552 355 6 39 585 30 571 2.69e-104 327
Msa1329820 MtrunA17_Chr7g0240381 32.423 586 352 10 15 584 1 558 4.33e-103 323
Msa1329820 MtrunA17_Chr7g0261881 31.818 594 366 11 14 590 2 573 7.62e-103 323
Msa1329820 MtrunA17_Chr4g0014841 34.854 548 323 10 40 585 35 550 7.36e-102 320
Msa1329820 MtrunA17_Chr3g0077151 33.877 552 320 10 39 585 33 544 6.08e-101 317
Msa1329820 MtrunA17_Chr3g0114501 33.938 551 349 9 40 588 28 565 1.46e-100 317
Msa1329820 MtrunA17_Chr4g0014801 34.636 563 332 10 28 585 21 552 3.81e-100 315
Msa1329820 MtrunA17_Chr4g0014781 35.766 548 320 10 40 585 35 552 5.66e-100 315
Msa1329820 MtrunA17_Chr4g0056431 34.483 551 351 6 39 585 30 574 6.96e-100 315
Msa1329820 MtrunA17_Chr1g0166791 32.933 583 365 11 18 590 4 570 8.17e-100 315
Msa1329820 MtrunA17_Chr1g0213711 32.865 569 362 7 17 582 4 555 1.17e-99 315
Msa1329820 MtrunA17_Chr4g0063591 35.986 553 331 11 39 586 27 561 6.02e-99 312
Msa1329820 MtrunA17_Chr7g0214731 34.215 567 332 13 39 584 66 612 1.27e-98 313
Msa1329820 MtrunA17_Chr4g0014791 35.883 549 316 11 40 585 35 550 4.95e-98 310
Msa1329820 MtrunA17_Chr7g0240151 36.069 463 258 8 125 579 4 436 6.15e-98 306
Msa1329820 MtrunA17_Chr7g0214461 30.796 578 383 6 21 596 63 625 1.03e-97 311
Msa1329820 MtrunA17_Chr7g0217461 32.321 560 370 6 28 583 16 570 4.28e-97 308
Msa1329820 MtrunA17_Chr1g0187241 32.101 595 369 10 7 590 2 572 1.50e-96 306
Msa1329820 MtrunA17_Chr4g0014871 34.296 554 321 11 40 585 36 554 6.28e-96 304
Msa1329820 MtrunA17_Chr7g0261851 32.428 552 351 7 40 585 34 569 2.87e-95 303
Msa1329820 MtrunA17_Chr2g0326211 34.489 577 339 9 18 585 2 548 5.29e-95 301
Msa1329820 MtrunA17_Chr4g0054891 31.009 545 363 4 40 582 116 649 8.64e-95 304
Msa1329820 MtrunA17_Chr1g0193391 33.155 561 347 10 39 595 22 558 5.72e-94 300
Msa1329820 MtrunA17_Chr7g0218851 31.162 568 361 10 25 582 35 582 1.61e-93 299
Msa1329820 MtrunA17_Chr1g0166711 33.153 555 352 8 40 590 31 570 2.59e-93 298
Msa1329820 MtrunA17_Chr1g0177611 37.246 443 258 8 141 581 11 435 3.06e-93 293
Msa1329820 MtrunA17_Chr8g0353031 33.333 555 336 8 39 585 23 551 3.82e-93 297
Msa1329820 MtrunA17_Chr7g0261791 29.863 586 384 8 12 585 1 571 2.40e-92 296
Msa1329820 MtrunA17_Chr2g0325951 32.988 579 345 12 18 585 2 548 1.06e-91 293
Msa1329820 MtrunA17_Chr1g0177631 37.698 443 256 8 141 581 11 435 2.33e-91 288
Msa1329820 MtrunA17_Chr7g0271221 32.639 576 359 9 20 591 3 553 2.06e-90 290
Msa1329820 MtrunA17_Chr2g0276751 31.551 561 347 11 37 591 41 570 1.74e-88 286
Msa1329820 MtrunA17_Chr1g0166741 32.379 559 347 8 39 590 32 566 9.69e-88 283
Msa1329820 MtrunA17_Chr3g0133341 31.570 567 348 8 32 584 10 550 1.51e-87 282
Msa1329820 MtrunA17_Chr2g0325961 32.702 581 345 15 18 585 2 549 5.86e-87 280
Msa1329820 MtrunA17_Chr4g0069581 33.395 539 334 7 53 588 5 521 2.92e-85 276
Msa1329820 MtrunA17_Chr2g0284701 31.353 606 394 11 5 596 2 599 3.49e-85 277
Msa1329820 MtrunA17_Chr4g0014861 36.000 450 257 9 143 585 4 429 5.78e-85 271
Msa1329820 MtrunA17_Chr7g0261661 32.842 475 291 10 125 590 4 459 6.73e-85 273
Msa1329820 MtrunA17_Chr1g0166771 31.467 518 328 8 52 564 9 504 1.43e-83 271
Msa1329820 MtrunA17_Chr3g0082631 35.632 435 255 6 164 585 38 460 2.85e-83 268
Msa1329820 MtrunA17_Chr8g0379971 32.986 576 351 10 37 584 23 591 3.19e-83 272
Msa1329820 MtrunA17_Chr4g0011471 29.981 537 363 5 49 582 31 557 7.75e-83 270
Msa1329820 MtrunA17_Chr1g0166731 34.322 472 295 7 121 590 9 467 2.83e-82 266
Msa1329820 MtrunA17_Chr8g0362711 29.455 550 381 5 37 584 27 571 4.88e-81 266
Msa1329820 MtrunA17_Chr5g0415961 29.329 566 362 12 37 584 27 572 2.86e-75 250
Msa1329820 MtrunA17_Chr8g0379991 30.351 570 351 10 55 584 1 564 1.03e-72 243
Msa1329820 MtrunA17_Chr4g0011041 25.171 584 420 8 7 582 5 579 1.81e-66 227
Msa1329820 MtrunA17_Chr6g0451841 28.440 545 339 13 53 581 24 533 3.93e-66 225
Msa1329820 MtrunA17_Chr7g0261751 30.263 456 269 8 40 456 37 482 9.42e-66 224
Msa1329820 MtrunA17_Chr3g0112631 34.532 278 174 5 307 584 3 272 1.05e-56 192
Msa1329820 MtrunA17_Chr3g0142121 36.957 276 155 6 310 585 13 269 2.16e-54 186
Msa1329820 MtrunA17_Chr7g0261731 30.595 353 221 5 12 351 1 342 2.97e-54 188
Msa1329820 MtrunA17_Chr3g0142111 32.595 316 201 6 16 322 21 333 3.62e-52 182
Msa1329820 MtrunA17_Chr4g0060071 32.441 299 171 5 294 584 23 298 3.14e-46 165
Msa1329820 MtrunA17_Chr1g0147591 42.786 201 103 5 161 356 7 200 2.79e-44 156
Msa1329820 MtrunA17_Chr7g0234181 27.655 452 276 11 133 581 10 413 1.01e-40 153
Msa1329820 MtrunA17_Chr7g0234381 27.706 462 287 11 121 581 3 418 1.41e-38 147
Msa1329820 MtrunA17_Chr7g0261721 36.019 211 132 3 384 594 4 211 2.45e-38 141
Msa1329820 MtrunA17_Chr7g0234151 27.489 462 288 10 121 581 3 418 8.43e-38 145
Msa1329820 MtrunA17_Chr2g0326221 31.276 243 134 4 343 585 15 224 7.77e-30 117
Msa1329820 MtrunA17_Chr3g0112651 35.000 140 91 0 142 281 38 177 2.20e-24 101
Msa1329820 MtrunA17_Chr8g0362791 53.012 83 39 0 38 120 40 122 1.22e-22 94.4
Msa1329820 MtrunA17_Chr7g0261831 32.515 163 96 4 265 424 3 154 1.65e-19 87.4
Msa1329820 MtrunA17_Chr4g0060061 33.058 121 81 0 146 266 8 128 4.21e-19 84.0
Msa1329820 MtrunA17_Chr8g0382591 36.975 119 71 4 307 423 3 119 3.97e-18 81.3
Msa1329820 MtrunA17_Chr7g0240221 42.683 82 47 0 39 120 32 113 3.32e-17 78.2
Msa1329820 MtrunA17_Chr7g0240191 42.683 82 47 0 39 120 32 113 3.32e-17 78.2
Msa1329820 MtrunA17_Chr7g0240161 42.683 82 47 0 39 120 32 113 3.32e-17 78.2
Msa1329820 MtrunA17_Chr7g0240141 42.683 82 47 0 39 120 32 113 4.48e-17 77.8
Msa1329820 MtrunA17_Chr7g0235511 42.857 84 46 1 39 120 32 115 9.21e-16 73.9
Msa1329820 MtrunA17_Chr1g0147581 32.174 115 70 2 444 558 10 116 2.28e-14 69.7
Msa1329820 MtrunA17_Chr5g0415851 45.333 75 38 1 48 122 6 77 1.06e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329820 AT5G62680.1 62.589 564 208 3 23 584 30 592 0.0 755
Msa1329820 AT1G18880.1 60.417 576 222 4 20 592 2 574 0.0 748
Msa1329820 AT3G47960.1 60.791 556 215 3 30 584 55 608 0.0 716
Msa1329820 AT1G69870.1 46.875 576 287 7 13 584 34 594 0.0 534
Msa1329820 AT1G27080.1 44.324 555 277 9 39 584 17 548 1.20e-155 459
Msa1329820 AT1G27080.2 43.478 529 267 9 65 584 1 506 2.27e-142 424
Msa1329820 AT5G28470.2 37.818 550 319 7 39 581 20 553 1.52e-138 415
Msa1329820 AT1G52190.1 36.926 566 345 8 22 581 7 566 2.96e-136 410
Msa1329820 AT1G69860.1 39.336 572 315 8 23 585 2 550 4.57e-136 408
Msa1329820 AT5G28470.1 37.636 550 318 8 39 581 20 551 1.83e-135 407
Msa1329820 AT1G68570.1 37.201 586 354 7 21 597 1 581 3.10e-133 402
Msa1329820 AT3G54140.1 36.054 588 355 8 4 590 2 569 7.67e-132 398
Msa1329820 AT3G54140.2 36.054 588 355 8 4 590 2 569 7.67e-132 398
Msa1329820 AT3G16180.1 36.252 571 350 10 18 581 2 565 8.94e-131 395
Msa1329820 AT5G01180.2 36.348 575 345 8 21 585 1 564 3.41e-129 391
Msa1329820 AT5G01180.3 36.348 575 345 8 21 585 1 564 3.41e-129 391
Msa1329820 AT5G01180.1 36.348 575 345 8 21 585 1 564 3.41e-129 391
Msa1329820 AT1G68570.2 37.500 552 338 6 48 597 5 551 1.43e-127 387
Msa1329820 AT2G02040.1 34.648 583 370 7 7 588 13 585 9.95e-123 375
Msa1329820 AT1G62200.1 38.504 548 319 6 40 584 56 588 1.25e-121 372
Msa1329820 AT1G62200.2 36.742 577 318 7 40 584 56 617 3.24e-118 364
Msa1329820 AT1G62200.3 36.742 577 318 7 40 584 70 631 4.56e-118 364
Msa1329820 AT2G02020.1 33.559 590 326 8 12 583 1 542 1.50e-107 334
Msa1329820 AT4G21680.1 33.818 550 349 6 40 583 32 572 3.95e-104 327
Msa1329820 AT3G54450.1 33.996 553 335 10 39 585 15 543 1.85e-103 324
Msa1329820 AT3G45660.1 34.220 564 344 9 22 585 7 543 6.55e-103 323
Msa1329820 AT3G45660.3 34.220 564 344 9 22 585 7 543 6.55e-103 323
Msa1329820 AT3G45660.2 34.220 564 344 9 22 585 28 564 1.07e-102 323
Msa1329820 AT3G45650.1 34.369 547 332 9 39 585 25 544 1.32e-102 322
Msa1329820 AT3G21670.1 33.681 576 351 7 18 587 11 561 1.95e-102 322
Msa1329820 AT2G37900.1 33.880 549 337 9 39 584 41 566 3.83e-102 321
Msa1329820 AT5G13400.1 34.099 566 350 11 39 593 67 620 4.84e-101 320
Msa1329820 AT1G59740.1 33.102 577 360 10 13 580 14 573 4.49e-99 313
Msa1329820 AT3G45680.1 32.566 565 355 7 21 585 5 543 7.19e-99 312
Msa1329820 AT3G53960.1 32.364 550 352 7 39 584 40 573 7.68e-99 313
Msa1329820 AT1G12110.1 33.989 559 339 7 39 585 30 570 2.00e-98 312
Msa1329820 AT3G45650.2 32.810 573 332 10 39 585 25 570 1.21e-96 307
Msa1329820 AT3G45720.1 32.123 551 339 9 39 585 22 541 6.99e-96 304
Msa1329820 AT2G26690.1 34.249 546 341 8 39 582 27 556 6.47e-95 302
Msa1329820 AT1G32450.1 30.479 584 383 7 15 582 6 582 1.19e-94 303
Msa1329820 AT5G46050.1 30.769 585 384 8 11 590 2 570 3.66e-94 300
Msa1329820 AT1G33440.1 32.570 568 351 10 37 596 39 582 7.18e-94 300
Msa1329820 AT5G46040.1 32.079 558 358 7 40 592 31 572 2.89e-93 298
Msa1329820 AT2G37900.2 33.202 506 312 8 83 585 6 488 4.31e-93 295
Msa1329820 AT5G19640.1 29.725 619 379 12 1 594 4 591 5.73e-93 298
Msa1329820 AT2G26690.2 34.264 537 335 8 48 582 3 523 1.20e-92 295
Msa1329820 AT1G22550.1 32.578 574 356 8 18 585 12 560 5.92e-92 294
Msa1329820 AT2G40460.1 32.206 562 352 9 40 595 28 566 9.02e-92 294
Msa1329820 AT3G45700.1 31.504 565 355 7 21 585 1 533 1.41e-91 293
Msa1329820 AT3G45710.1 30.728 563 365 7 23 585 8 545 1.92e-90 290
Msa1329820 AT2G26690.3 34.156 527 329 8 58 582 1 511 5.36e-90 288
Msa1329820 AT1G72125.1 32.759 580 361 8 10 585 3 557 1.11e-88 286
Msa1329820 AT1G22540.1 33.212 548 330 8 39 581 33 549 1.47e-88 285
Msa1329820 AT1G72130.1 32.491 554 316 12 39 583 28 532 2.05e-87 281
Msa1329820 AT1G22570.1 32.753 574 356 10 18 585 12 561 7.24e-87 281
Msa1329820 AT1G72140.1 30.537 596 358 12 1 586 5 554 4.74e-85 276
Msa1329820 AT1G27040.1 29.875 559 354 9 37 583 28 560 5.09e-85 276
Msa1329820 AT1G27040.2 29.875 559 354 9 37 583 24 556 5.86e-85 276
Msa1329820 AT1G69850.1 29.511 593 396 8 12 590 1 585 7.27e-84 274
Msa1329820 AT1G27040.3 30.037 546 344 9 50 583 9 528 3.69e-83 270
Msa1329820 AT1G22570.2 32.844 545 336 10 47 585 4 524 4.40e-82 267
Msa1329820 AT1G72120.1 31.897 580 362 10 10 585 3 553 2.44e-81 266
Msa1329820 AT5G46050.2 32.278 474 300 8 122 590 1 458 1.51e-77 254
Msa1329820 AT3G45690.1 29.630 567 323 14 23 585 6 500 1.98e-77 254
Msa1329820 AT5G62730.1 29.701 569 341 11 37 585 57 586 1.15e-76 254
Msa1329820 AT5G62730.2 29.768 561 335 11 45 585 6 527 3.88e-76 252
Msa1329820 AT2G02020.2 30.169 590 325 12 12 583 1 521 9.86e-76 250
Msa1329820 AT5G14940.1 29.144 549 341 13 53 584 24 541 4.45e-75 249
Msa1329820 AT1G72130.2 32.166 457 256 10 136 583 3 414 1.47e-73 241
Msa1329820 AT1G72130.3 32.166 457 256 10 136 583 3 414 1.47e-73 241
Msa1329820 AT3G01350.1 27.568 555 348 12 53 582 24 549 4.28e-64 221
Msa1329820 AT3G25260.1 29.123 570 344 13 15 581 3 515 1.68e-63 218
Msa1329820 AT3G25280.1 27.417 569 359 15 18 581 2 521 9.34e-52 186
Msa1329820 AT5G11570.1 34.615 260 157 2 322 581 230 476 1.90e-47 173
Msa1329820 AT5G11570.1 34.667 225 140 3 35 256 12 232 1.72e-37 145
Msa1329820 AT2G38100.1 24.299 535 346 18 60 583 14 500 2.34e-27 116
Msa1329820 AT2G38100.3 24.299 535 346 18 60 583 20 506 2.45e-27 116
Msa1329820 AT2G38100.2 24.105 531 344 18 64 583 2 484 3.00e-27 116

Find 107 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTGATACATATTT+TGG 0.129529 8_4:-48749448 Msa1329820:CDS
ATTAACAATGTTACAATTAA+AGG 0.135122 8_4:+48746220 None:intergenic
GGAATAAATGTTATTATATA+TGG 0.143817 8_4:-48746263 Msa1329820:three_prime_UTR
CATATATAACTGTGCATAAA+TGG 0.151166 8_4:-48749846 Msa1329820:exon
CCAAATCTGCTACAGGAAAT+TGG 0.223411 8_4:-48746468 Msa1329820:CDS
CTCCCTTTATTAAGATCTTC+TGG 0.250656 8_4:+48746442 None:intergenic
CCAATTTCCTGTAGCAGATT+TGG 0.255669 8_4:+48746468 None:intergenic
CAGCCTCTGTGGATGATCTT+AGG 0.259636 8_4:+48749731 None:intergenic
TTCCTTACACATATCAATTC+AGG 0.263655 8_4:-48748360 Msa1329820:intron
CATTCCAAACAGGGATTACT+TGG 0.266253 8_4:-48748910 Msa1329820:intron
TAATGTTAAGCATGACATTA+TGG 0.268892 8_4:-48746897 Msa1329820:CDS
ATTGGTGTTGGAATATTTCT+AGG 0.270353 8_4:-48746793 Msa1329820:CDS
TGCATATTATTATACTTTCA+TGG 0.309975 8_4:+48746295 None:intergenic
TTCTCTATACTTGTACCATT+TGG 0.316202 8_4:+48746351 None:intergenic
GAAGAAATATGTATATAGTT+GGG 0.330670 8_4:+48749896 None:intergenic
TTACCAGAAGATCTTAATAA+AGG 0.332263 8_4:-48746445 Msa1329820:CDS
GGATTTGGTTTACTGTTAAT+AGG 0.335496 8_4:-48748781 Msa1329820:CDS
TTTCTTGGTTGCATTCCAAT+AGG 0.353350 8_4:+48746706 None:intergenic
CTGCTGCTACTACTACTAAT+AGG 0.356018 8_4:+48746328 None:intergenic
ACCAACTTTGCTACCTTGCT+TGG 0.356960 8_4:-48749475 Msa1329820:CDS
TTAGCTTTAACTAAGCCTAT+TGG 0.370660 8_4:-48746721 Msa1329820:CDS
GGAAGAAATATGTATATAGT+TGG 0.380320 8_4:+48749895 None:intergenic
GGCGCGATTTCGTCGATGTC+TGG 0.381630 8_4:-48746682 Msa1329820:CDS
ATCACAGTCCTTCAAAGAAT+TGG 0.387420 8_4:-48746811 Msa1329820:CDS
GTTCCTCAGTTGATACTAGC+TGG 0.396535 8_4:-48746649 Msa1329820:CDS
GAATCAACAGTTTCTTCAAT+TGG 0.397804 8_4:-48748681 Msa1329820:CDS
TAATAATATGCACAATCTTA+AGG 0.406091 8_4:-48746284 Msa1329820:three_prime_UTR
TTCCAACACCAATTCTTTGA+AGG 0.409566 8_4:+48746803 None:intergenic
AACTAGAAAACAAAGGTCAT+TGG 0.414450 8_4:+48749927 None:intergenic
TCAAATGTGAGCTGGGCAAT+TGG 0.416070 8_4:-48748598 Msa1329820:CDS
AGACCATGTAACTTAGCATT+TGG 0.416324 8_4:-48748745 Msa1329820:CDS
AAAGCCATTTGTCCTGTTGT+TGG 0.429093 8_4:+48748814 None:intergenic
AGATCTTAATAAAGGGAGAT+TGG 0.435026 8_4:-48746437 Msa1329820:CDS
TACCAGAAGATCTTAATAAA+GGG 0.436377 8_4:-48746444 Msa1329820:CDS
GGATCAGCTGATGAACCATC+TGG 0.441864 8_4:+48747117 None:intergenic
GTGAGCTGGGCAATTGGTCT+TGG 0.444917 8_4:-48748592 Msa1329820:CDS
TGGAACATTAGCAAACTTGT+TGG 0.452206 8_4:-48749569 Msa1329820:CDS
CATATTTCTTCCTCCTGACC+AGG 0.457374 8_4:-48749884 Msa1329820:five_prime_UTR
AGAACCAACAACAGGACAAA+TGG 0.467232 8_4:-48748818 Msa1329820:CDS
GAAAGCATTGGATGCTCAGC+AGG 0.469264 8_4:+48748424 None:intergenic
AGTGGAAGAGTTGAAATGTT+TGG 0.475400 8_4:-48747070 Msa1329820:CDS
AAGGTCATGCCTTTCATCAT+AGG 0.477830 8_4:-48749707 Msa1329820:intron
AAAATTGCTGAAAACCATAT+AGG 0.479481 8_4:+48747036 None:intergenic
AGTAGTAGTAGCAGCAGCAT+TGG 0.482165 8_4:-48746322 Msa1329820:CDS
ACTAGAAAACAAAGGTCATT+GGG 0.483791 8_4:+48749928 None:intergenic
CTAAGATCATCCACAGAGGC+TGG 0.484422 8_4:-48749730 Msa1329820:CDS
ATATATAACTGTGCATAAAT+GGG 0.485238 8_4:-48749845 Msa1329820:exon
AAAACAGATTCAGGAAAGAA+AGG 0.485517 8_4:-48748703 Msa1329820:CDS
AAGAAATATGTATATAGTTG+GGG 0.488382 8_4:+48749897 None:intergenic
ACAACTATTCTATCATAGAT+TGG 0.488817 8_4:+48746871 None:intergenic
AATTAGAAATTTGAAAGGAT+CGG 0.488922 8_4:-48746200 Msa1329820:three_prime_UTR
CCTGAGAATATGAAAAGCAT+TGG 0.492874 8_4:-48746571 Msa1329820:CDS
GAAATTTGAAAGGATCGGAA+TGG 0.493644 8_4:-48746195 Msa1329820:three_prime_UTR
AAATTTGAAAGGATCGGAAT+GGG 0.497160 8_4:-48746194 Msa1329820:three_prime_UTR
ATCTAGATAACACCCTGGTC+AGG 0.498936 8_4:+48749871 None:intergenic
CTTTCCTTTGCACAGTGTGG+TGG 0.509167 8_4:+48748853 None:intergenic
CTTCAATCAAATAGACGAAT+GGG 0.509746 8_4:-48746964 Msa1329820:CDS
TACCTGAATTGATATGTGTA+AGG 0.513650 8_4:+48748358 None:intergenic
GTCCTTCAAAGAATTGGTGT+TGG 0.515088 8_4:-48746805 Msa1329820:CDS
ACCAAGCAAGGTAGCAAAGT+TGG 0.519987 8_4:+48749474 None:intergenic
ATTGGAATGCAACCAAGAAA+AGG 0.521618 8_4:-48746703 Msa1329820:CDS
ACAACTTCCAAATCTGCTAC+AGG 0.522592 8_4:-48746475 Msa1329820:CDS
ATATACAATCAAATGTGAGC+TGG 0.522986 8_4:-48748606 Msa1329820:CDS
GAGAATATGAAAAGCATTGG+AGG 0.523033 8_4:-48746568 Msa1329820:CDS
ACATGCAAAGAACCAACAAC+AGG 0.523772 8_4:-48748826 Msa1329820:CDS
GCTATTAACATCAAAGCAGC+AGG 0.526773 8_4:+48748565 None:intergenic
TTACTGTTAATAGGTGCTGC+AGG 0.527961 8_4:-48748772 Msa1329820:CDS
CAAGTTTGCTAATGTTCCAA+TGG 0.533736 8_4:+48749573 None:intergenic
TATACAATCAAATGTGAGCT+GGG 0.543295 8_4:-48748605 Msa1329820:CDS
TCGGTGAATCTTCGGAGCAA+AGG 0.545760 8_4:+48746847 None:intergenic
ATGGTTCATCAGCTGATCCA+TGG 0.546248 8_4:-48747113 Msa1329820:CDS
CTAGTGATGGGACTACCACT+TGG 0.547626 8_4:+48748496 None:intergenic
TGTTGTTGGTTCTTTGCATG+TGG 0.552280 8_4:+48748828 None:intergenic
TGCACCAGGTATCTTGAAGT+TGG 0.552408 8_4:+48746936 None:intergenic
ACTTCAATCAAATAGACGAA+TGG 0.564079 8_4:-48746965 Msa1329820:CDS
AACCATTTGTGCAAAAGTGA+AGG 0.567355 8_4:+48748648 None:intergenic
AAGCTTTGAATTAATAGACA+TGG 0.568737 8_4:+48748381 None:intergenic
GGAGAAAGAGAGACAGAAGA+AGG 0.569451 8_4:-48749824 Msa1329820:CDS
ACACCAAATGCTAAGTTACA+TGG 0.574582 8_4:+48748742 None:intergenic
AGAGAAGAAAGCACCAAGCA+AGG 0.574955 8_4:+48749462 None:intergenic
GTTGCTGAACAATAACTAGA+TGG 0.575128 8_4:+48747010 None:intergenic
TAATCAAAGAGTGAAAGCAT+TGG 0.577528 8_4:+48748412 None:intergenic
GATCATCCACAGAGGCTGGA+AGG 0.582360 8_4:-48749726 Msa1329820:CDS
TTGTTAATTAGAAATTTGAA+AGG 0.583405 8_4:-48746205 Msa1329820:three_prime_UTR
AACACCAACTTCAAGATACC+TGG 0.590112 8_4:-48746940 Msa1329820:CDS
CATTAATTACCTATGATGAA+AGG 0.593430 8_4:+48749698 None:intergenic
AGCTTTGAATTAATAGACAT+GGG 0.599389 8_4:+48748382 None:intergenic
GCATGACCTTCCAGCCTCTG+TGG 0.600147 8_4:+48749720 None:intergenic
TCTTTGCAGCATACAACAAG+TGG 0.605971 8_4:-48747088 Msa1329820:CDS
AACATCATCAATATCTTCAG+TGG 0.606716 8_4:-48749502 Msa1329820:CDS
TGTATGCTGCAAAGACTCCA+TGG 0.610232 8_4:+48747096 None:intergenic
GCACTTTCCTTTGCACAGTG+TGG 0.621780 8_4:+48748850 None:intergenic
TAGATAACACCCTGGTCAGG+AGG 0.622012 8_4:+48749874 None:intergenic
TATGTGAAAGTTAAACCAAG+TGG 0.624168 8_4:-48748511 Msa1329820:CDS
TAACATTAAGAAGACAGTGT+AGG 0.625125 8_4:+48746912 None:intergenic
TCATCCACCACACTGTGCAA+AGG 0.625702 8_4:-48748857 Msa1329820:CDS
AGAAATATGTATATAGTTGG+GGG 0.626474 8_4:+48749898 None:intergenic
ATATTTCTTCCTCCTGACCA+GGG 0.635142 8_4:-48749883 Msa1329820:five_prime_UTR
CAAGACAAAATAAATCCAGA+TGG 0.635882 8_4:-48747132 Msa1329820:CDS
AGAATATGAAAAGCATTGGA+GGG 0.646435 8_4:-48746567 Msa1329820:CDS
AAGACAGTGTAGGATGCACC+AGG 0.652597 8_4:+48746922 None:intergenic
TTTGAATTAATAGACATGGG+TGG 0.673189 8_4:+48748385 None:intergenic
GAGGTTGAACTAGAAAACAA+AGG 0.698480 8_4:+48749920 None:intergenic
AATTGAGAAAGAAAACAACA+TGG 0.708030 8_4:-48749786 Msa1329820:CDS
AATCCAGCTAGTATCAACTG+AGG 0.717630 8_4:+48746646 None:intergenic
ATGCAATCTAGATAACACCC+TGG 0.728647 8_4:+48749866 None:intergenic
GAACCTAAGATCATCCACAG+AGG 0.792669 8_4:-48749734 Msa1329820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATACTATAATTAATTTGT+AGG + chr8_4:48746866-48746885 None:intergenic 10.0%
!! GAATATTTATATGTAAAATT+AGG - chr8_4:48748181-48748200 Msa1329820:intron 10.0%
!! AATTTAATATCTAAACTTAA+CGG - chr8_4:48748576-48748595 Msa1329820:CDS 10.0%
!! TAATACTATTAGATAAAAAT+AGG - chr8_4:48748850-48748869 Msa1329820:CDS 10.0%
!! AATACTATTAGATAAAAATA+GGG - chr8_4:48748851-48748870 Msa1329820:CDS 10.0%
!!! AATGAAACTTTTGAAAAATT+AGG - chr8_4:48746437-48746456 Msa1329820:CDS 15.0%
!!! AATATTTAGTTTTAGTCAAA+TGG + chr8_4:48746680-48746699 None:intergenic 15.0%
!!! AAAAACTTTTCAATTAATTG+TGG - chr8_4:48746748-48746767 Msa1329820:CDS 15.0%
!!! TATATTTTCTTAAATCCTTA+CGG + chr8_4:48746956-48746975 None:intergenic 15.0%
!!! TTTGAAACAAAAAAACTTAA+AGG + chr8_4:48747966-48747985 None:intergenic 15.0%
!!! TAAGTTTTTTTGTTTCAAAT+TGG - chr8_4:48747967-48747986 Msa1329820:intron 15.0%
!! AGATAATTTAAAAGATCAAT+TGG - chr8_4:48748384-48748403 Msa1329820:CDS 15.0%
!! AAATGTAACAAATTTACAAA+AGG + chr8_4:48748479-48748498 None:intergenic 15.0%
!! AGATATTAAATTAAATCATC+TGG + chr8_4:48748568-48748587 None:intergenic 15.0%
!! AAACAAATAAAAAATCTACT+AGG + chr8_4:48748810-48748829 None:intergenic 15.0%
!! GGAATAAATGTTATTATATA+TGG - chr8_4:48749772-48749791 Msa1329820:CDS 15.0%
!! ATTAACAATGTTACAATTAA+AGG + chr8_4:48749818-48749837 None:intergenic 15.0%
!! TTGTTAATTAGAAATTTGAA+AGG - chr8_4:48749830-48749849 Msa1329820:CDS 15.0%
!! AAGAAATATGTATATAGTTG+GGG + chr8_4:48746141-48746160 None:intergenic 20.0%
!! GAAGAAATATGTATATAGTT+GGG + chr8_4:48746142-48746161 None:intergenic 20.0%
!! ATATATAACTGTGCATAAAT+GGG - chr8_4:48746190-48746209 Msa1329820:three_prime_UTR 20.0%
!!! GTTTTAACTTTTTTCAACAT+TGG + chr8_4:48746723-48746742 None:intergenic 20.0%
!!! AATTTTTCATGAAACTTTCT+AGG + chr8_4:48746784-48746803 None:intergenic 20.0%
!!! ATAATTAATTTGTAGGAGTT+TGG + chr8_4:48746859-48746878 None:intergenic 20.0%
!! TAAGAAAATATATGTTGTAC+TGG - chr8_4:48746886-48746905 Msa1329820:CDS 20.0%
!! ACATTAAAAAAGCAAAGTAA+CGG + chr8_4:48747766-48747785 None:intergenic 20.0%
!!! TGGTAGTGATAATTTTTTAA+AGG - chr8_4:48747891-48747910 Msa1329820:intron 20.0%
!! TGATTAAGTTTGATGAAATT+AGG + chr8_4:48748023-48748042 None:intergenic 20.0%
!! AATTATCTCTTGTTACAAAT+TGG + chr8_4:48748372-48748391 None:intergenic 20.0%
!! TTAATCTATGTGAAAAAATC+AGG - chr8_4:48748509-48748528 Msa1329820:CDS 20.0%
!! TATCTTAAATGAACAAGATA+TGG + chr8_4:48748718-48748737 None:intergenic 20.0%
!!! AAATGTTGAGTTGAATAATT+TGG + chr8_4:48748741-48748760 None:intergenic 20.0%
!!! AACATTTTCATAAACTAGAT+TGG - chr8_4:48748754-48748773 Msa1329820:CDS 20.0%
!! ATTAGATAAAAATAGGGTAT+TGG - chr8_4:48748857-48748876 Msa1329820:CDS 20.0%
!!! TATTTTTATTACATGATTGC+TGG - chr8_4:48749623-48749642 Msa1329820:intron 20.0%
!!! ATTTTTATTACATGATTGCT+GGG - chr8_4:48749624-48749643 Msa1329820:intron 20.0%
!! TGCATATTATTATACTTTCA+TGG + chr8_4:48749743-48749762 None:intergenic 20.0%
!! TAATAATATGCACAATCTTA+AGG - chr8_4:48749751-48749770 Msa1329820:CDS 20.0%
!! AATTAGAAATTTGAAAGGAT+CGG - chr8_4:48749835-48749854 Msa1329820:exon 20.0%
! AGAAATATGTATATAGTTGG+GGG + chr8_4:48746140-48746159 None:intergenic 25.0%
! GGAAGAAATATGTATATAGT+TGG + chr8_4:48746143-48746162 None:intergenic 25.0%
! CATATATAACTGTGCATAAA+TGG - chr8_4:48746189-48746208 Msa1329820:three_prime_UTR 25.0%
! AATTGAGAAAGAAAACAACA+TGG - chr8_4:48746249-48746268 Msa1329820:three_prime_UTR 25.0%
! CATTAATTACCTATGATGAA+AGG + chr8_4:48746340-48746359 None:intergenic 25.0%
!! TGCTTGAAATTTTTATGAAC+AGG - chr8_4:48746413-48746432 Msa1329820:CDS 25.0%
!! TTCTTCTCTGATACATATTT+TGG - chr8_4:48746587-48746606 Msa1329820:CDS 25.0%
!!! GTTTGGTGTTTCATAAAATT+TGG + chr8_4:48746842-48746861 None:intergenic 25.0%
! TGTATATAATATCGTCATGT+CGG - chr8_4:48746982-48747001 Msa1329820:CDS 25.0%
! ACTTGAAAAATACTAGTGAT+GGG + chr8_4:48747554-48747573 None:intergenic 25.0%
!!! TAGTATTTTTCAAGTCTTAG+TGG - chr8_4:48747559-48747578 Msa1329820:intron 25.0%
!!! AGCTTTGAATTAATAGACAT+GGG + chr8_4:48747656-48747675 None:intergenic 25.0%
!!! AAGCTTTGAATTAATAGACA+TGG + chr8_4:48747657-48747676 None:intergenic 25.0%
! CATTAAAAAAGCAAAGTAAC+GGG + chr8_4:48747765-48747784 None:intergenic 25.0%
!!! GTTACTTTGCTTTTTTAATG+TGG - chr8_4:48747765-48747784 Msa1329820:intron 25.0%
! TAATTACTCAAAAAGTAGAG+TGG + chr8_4:48747835-48747854 None:intergenic 25.0%
!! TAAAGGCCAAATACTATTTT+CGG - chr8_4:48747908-48747927 Msa1329820:intron 25.0%
! GTTATAATCACGTAACTTAA+AGG + chr8_4:48747935-48747954 None:intergenic 25.0%
! GTTTGATGAAATTAGGATAA+TGG + chr8_4:48748016-48748035 None:intergenic 25.0%
!!! CTTAATCAAAAAGTGTTATG+TGG - chr8_4:48748035-48748054 Msa1329820:intron 25.0%
! CCATCTAACATTAAGATTAT+AGG + chr8_4:48748278-48748297 None:intergenic 25.0%
! CCTATAATCTTAATGTTAGA+TGG - chr8_4:48748275-48748294 Msa1329820:intron 25.0%
! TGGTAACAAAAGAAACTTAA+AGG - chr8_4:48748404-48748423 Msa1329820:CDS 25.0%
! AATGAACAAGATATGGAAAT+TGG + chr8_4:48748711-48748730 None:intergenic 25.0%
! AAAATTGCTGAAAACCATAT+AGG + chr8_4:48749002-48749021 None:intergenic 25.0%
! TAATGTTAAGCATGACATTA+TGG - chr8_4:48749138-48749157 Msa1329820:intron 25.0%
! ACAACTATTCTATCATAGAT+TGG + chr8_4:48749167-48749186 None:intergenic 25.0%
! TTACCAGAAGATCTTAATAA+AGG - chr8_4:48749590-48749609 Msa1329820:CDS 25.0%
! TACCAGAAGATCTTAATAAA+GGG - chr8_4:48749591-48749610 Msa1329820:CDS 25.0%
!! ACTTTTTGATGTTTTCCAAA+TGG - chr8_4:48749669-48749688 Msa1329820:intron 25.0%
!!! TTTGTGAAAAAAGTACTTCT+AGG + chr8_4:48749899-48749918 None:intergenic 25.0%
TTTGAAAAATTAGGAGCCAT+TGG - chr8_4:48746446-48746465 Msa1329820:CDS 30.0%
AACATCATCAATATCTTCAG+TGG - chr8_4:48746533-48746552 Msa1329820:CDS 30.0%
GCAAGGAAGAAGATTTAAAA+GGG + chr8_4:48747106-48747125 None:intergenic 30.0%
TGCAAGGAAGAAGATTTAAA+AGG + chr8_4:48747107-48747126 None:intergenic 30.0%
! CAAATGGCTTTTCTAATATC+AGG - chr8_4:48747233-48747252 Msa1329820:intron 30.0%
! GCTTTTCTAATATCAGGATT+TGG - chr8_4:48747239-48747258 Msa1329820:intron 30.0%
! GGATTTGGTTTACTGTTAAT+AGG - chr8_4:48747254-48747273 Msa1329820:intron 30.0%
TTCAATCCAAAAACAGATTC+AGG - chr8_4:48747323-48747342 Msa1329820:intron 30.0%
! TTCTTTCCTGAATCTGTTTT+TGG + chr8_4:48747332-48747351 None:intergenic 30.0%
AAAACAGATTCAGGAAAGAA+AGG - chr8_4:48747332-48747351 Msa1329820:intron 30.0%
GAATCAACAGTTTCTTCAAT+TGG - chr8_4:48747354-48747373 Msa1329820:intron 30.0%
ATATACAATCAAATGTGAGC+TGG - chr8_4:48747429-48747448 Msa1329820:intron 30.0%
TATACAATCAAATGTGAGCT+GGG - chr8_4:48747430-48747449 Msa1329820:intron 30.0%
!!! AGCATGTGTGTTATTTTTCA+TGG - chr8_4:48747490-48747509 Msa1329820:intron 30.0%
!!! GCATGTGTGTTATTTTTCAT+GGG - chr8_4:48747491-48747510 Msa1329820:intron 30.0%
TATGTGAAAGTTAAACCAAG+TGG - chr8_4:48747524-48747543 Msa1329820:intron 30.0%
GACTTGAAAAATACTAGTGA+TGG + chr8_4:48747555-48747574 None:intergenic 30.0%
! TAATCAAAGAGTGAAAGCAT+TGG + chr8_4:48747626-48747645 None:intergenic 30.0%
TTTGAATTAATAGACATGGG+TGG + chr8_4:48747653-48747672 None:intergenic 30.0%
TTCCTTACACATATCAATTC+AGG - chr8_4:48747675-48747694 Msa1329820:intron 30.0%
TACCTGAATTGATATGTGTA+AGG + chr8_4:48747680-48747699 None:intergenic 30.0%
! ATGGATGGAGTACAATTTTA+TGG + chr8_4:48747734-48747753 None:intergenic 30.0%
! ATTGTACTCCATCCATTTTA+AGG - chr8_4:48747738-48747757 Msa1329820:intron 30.0%
! AGTGGACACATTTAATTTAG+AGG + chr8_4:48747817-48747836 None:intergenic 30.0%
CATTTATCACTAGTAACAGT+TGG - chr8_4:48747871-48747890 Msa1329820:intron 30.0%
AAAGGACCGAAAATAGTATT+TGG + chr8_4:48747917-48747936 None:intergenic 30.0%
GTGGATGTTTAATGTTAAGT+TGG - chr8_4:48748054-48748073 Msa1329820:intron 30.0%
!! AACAAAGTTTGCTGAAAAGA+TGG - chr8_4:48748314-48748333 Msa1329820:intron 30.0%
ACAAAAAACTAATGTGATCG+AGG - chr8_4:48748681-48748700 Msa1329820:CDS 30.0%
CAAGACAAAATAAATCCAGA+TGG - chr8_4:48748903-48748922 Msa1329820:intron 30.0%
ACTTCAATCAAATAGACGAA+TGG - chr8_4:48749070-48749089 Msa1329820:intron 30.0%
CTTCAATCAAATAGACGAAT+GGG - chr8_4:48749071-48749090 Msa1329820:intron 30.0%
TAACATTAAGAAGACAGTGT+AGG + chr8_4:48749126-48749145 None:intergenic 30.0%
!! ATTGGTGTTGGAATATTTCT+AGG - chr8_4:48749242-48749261 Msa1329820:intron 30.0%
!! TTAGCTTTAACTAAGCCTAT+TGG - chr8_4:48749314-48749333 Msa1329820:intron 30.0%
!! AGAATATGAAAAGCATTGGA+GGG - chr8_4:48749468-48749487 Msa1329820:CDS 30.0%
AGATCTTAATAAAGGGAGAT+TGG - chr8_4:48749598-48749617 Msa1329820:CDS 30.0%
TTCTCTATACTTGTACCATT+TGG + chr8_4:48749687-48749706 None:intergenic 30.0%
AAATTTGAAAGGATCGGAAT+GGG - chr8_4:48749841-48749860 Msa1329820:exon 30.0%
! GGTATTTTCATGTTTCATTG+TGG - chr8_4:48749862-48749881 Msa1329820:five_prime_UTR 30.0%
GAGGTTGAACTAGAAAACAA+AGG + chr8_4:48746118-48746137 None:intergenic 35.0%
AATATGTATATAGTTGGGGG+AGG + chr8_4:48746137-48746156 None:intergenic 35.0%
!! CAAGTTTGCTAATGTTCCAA+TGG + chr8_4:48746465-48746484 None:intergenic 35.0%
TGGAACATTAGCAAACTTGT+TGG - chr8_4:48746466-48746485 Msa1329820:CDS 35.0%
! TTGCAGCTGTAATGTTTTTC+AGG + chr8_4:48746514-48746533 None:intergenic 35.0%
TATTCCAAGTAATCCCTGTT+TGG + chr8_4:48747132-48747151 None:intergenic 35.0%
AGACCATGTAACTTAGCATT+TGG - chr8_4:48747290-48747309 Msa1329820:intron 35.0%
ACACCAAATGCTAAGTTACA+TGG + chr8_4:48747296-48747315 None:intergenic 35.0%
!! TACCTTCACTTTTGCACAAA+TGG - chr8_4:48747385-48747404 Msa1329820:intron 35.0%
AACCATTTGTGCAAAAGTGA+AGG + chr8_4:48747390-48747409 None:intergenic 35.0%
!!! TGTGTGTTATTTTTCATGGG+AGG - chr8_4:48747494-48747513 Msa1329820:intron 35.0%
! AAAGTAACGGGACCTTAAAA+TGG + chr8_4:48747753-48747772 None:intergenic 35.0%
CTCTCAAAACTAAAGCTCAT+AGG - chr8_4:48748094-48748113 Msa1329820:intron 35.0%
! AAGCTCATAGGTGTGTTATT+CGG - chr8_4:48748106-48748125 Msa1329820:intron 35.0%
TTTGCTGAAAAGATGGATGA+CGG - chr8_4:48748321-48748340 Msa1329820:intron 35.0%
GTCATAAAAGTTGTCTCACA+TGG + chr8_4:48748648-48748667 None:intergenic 35.0%
AGTGGAAGAGTTGAAATGTT+TGG - chr8_4:48748965-48748984 Msa1329820:intron 35.0%
! TGGTGAGAGTTTTACCTATA+TGG - chr8_4:48748985-48749004 Msa1329820:intron 35.0%
GTTGCTGAACAATAACTAGA+TGG + chr8_4:48749028-48749047 None:intergenic 35.0%
!!! CTTCTTTTTCGGTGAATCTT+CGG + chr8_4:48749199-48749218 None:intergenic 35.0%
ATCACAGTCCTTCAAAGAAT+TGG - chr8_4:48749224-48749243 Msa1329820:intron 35.0%
TTCCAACACCAATTCTTTGA+AGG + chr8_4:48749235-48749254 None:intergenic 35.0%
TTTCTTGGTTGCATTCCAAT+AGG + chr8_4:48749332-48749351 None:intergenic 35.0%
ATTGGAATGCAACCAAGAAA+AGG - chr8_4:48749332-48749351 Msa1329820:intron 35.0%
! CCAATGCTTTTCATATTCTC+AGG + chr8_4:48749467-48749486 None:intergenic 35.0%
! CCTGAGAATATGAAAAGCAT+TGG - chr8_4:48749464-48749483 Msa1329820:CDS 35.0%
!! GAGAATATGAAAAGCATTGG+AGG - chr8_4:48749467-48749486 Msa1329820:CDS 35.0%
CTCCCTTTATTAAGATCTTC+TGG + chr8_4:48749596-48749615 None:intergenic 35.0%
GAAATTTGAAAGGATCGGAA+TGG - chr8_4:48749840-48749859 Msa1329820:exon 35.0%
!! TGAAAAAAGTACTTCTAGGC+AGG + chr8_4:48749895-48749914 None:intergenic 35.0%
ATATTTCTTCCTCCTGACCA+GGG - chr8_4:48746152-48746171 Msa1329820:three_prime_UTR 40.0%
ATGCAATCTAGATAACACCC+TGG + chr8_4:48746172-48746191 None:intergenic 40.0%
AAGGTCATGCCTTTCATCAT+AGG - chr8_4:48746328-48746347 Msa1329820:CDS 40.0%
! CTGCACAATCACTTCTTTTC+TGG - chr8_4:48746631-48746650 Msa1329820:CDS 40.0%
!! TATATGTTGTACTGGCTTGC+TGG - chr8_4:48746894-48746913 Msa1329820:CDS 40.0%
! CTTCAGATTAAAGGTGTGTC+TGG + chr8_4:48747011-48747030 None:intergenic 40.0%
! ACACCTTTAATCTGAAGCGT+TGG - chr8_4:48747014-48747033 Msa1329820:CDS 40.0%
TGCTACATAGTGTATGTGTC+TGG - chr8_4:48747037-48747056 Msa1329820:CDS 40.0%
TTCTTCCTTGCATTCCAAAC+AGG - chr8_4:48747115-48747134 Msa1329820:CDS 40.0%
TCTTCCTTGCATTCCAAACA+GGG - chr8_4:48747116-48747135 Msa1329820:CDS 40.0%
! TAATCCCTGTTTGGAATGCA+AGG + chr8_4:48747123-48747142 None:intergenic 40.0%
CATTCCAAACAGGGATTACT+TGG - chr8_4:48747125-48747144 Msa1329820:CDS 40.0%
!! TGTTGTTGGTTCTTTGCATG+TGG + chr8_4:48747210-48747229 None:intergenic 40.0%
ACATGCAAAGAACCAACAAC+AGG - chr8_4:48747209-48747228 Msa1329820:intron 40.0%
AGAACCAACAACAGGACAAA+TGG - chr8_4:48747217-48747236 Msa1329820:intron 40.0%
AAAGCCATTTGTCCTGTTGT+TGG + chr8_4:48747224-48747243 None:intergenic 40.0%
! TTACTGTTAATAGGTGCTGC+AGG - chr8_4:48747263-48747282 Msa1329820:intron 40.0%
GCTATTAACATCAAAGCAGC+AGG + chr8_4:48747473-48747492 None:intergenic 40.0%
TAACGGGACCTTAAAATGGA+TGG + chr8_4:48747749-48747768 None:intergenic 40.0%
ATAACTTAAAGAGCCACGAG+AGG - chr8_4:48748446-48748465 Msa1329820:CDS 40.0%
TCTTTGCAGCATACAACAAG+TGG - chr8_4:48748947-48748966 Msa1329820:intron 40.0%
AACACCAACTTCAAGATACC+TGG - chr8_4:48749095-48749114 Msa1329820:intron 40.0%
CGAAGATTCACCGAAAAAGA+AGG - chr8_4:48749197-48749216 Msa1329820:intron 40.0%
AGATTCACCGAAAAAGAAGG+CGG - chr8_4:48749200-48749219 Msa1329820:intron 40.0%
GTCCTTCAAAGAATTGGTGT+TGG - chr8_4:48749230-48749249 Msa1329820:intron 40.0%
!!! TTTCGTCGATGTCTGGTTTT+TGG - chr8_4:48749360-48749379 Msa1329820:intron 40.0%
AATCCAGCTAGTATCAACTG+AGG + chr8_4:48749392-48749411 None:intergenic 40.0%
! GCTGAAACTTTTACTGCTGT+TGG - chr8_4:48749413-48749432 Msa1329820:CDS 40.0%
!!! GTCACTTTTCTATTGTGGCA+TGG - chr8_4:48749490-48749509 Msa1329820:CDS 40.0%
ACAACTTCCAAATCTGCTAC+AGG - chr8_4:48749560-48749579 Msa1329820:CDS 40.0%
CCAATTTCCTGTAGCAGATT+TGG + chr8_4:48749570-48749589 None:intergenic 40.0%
CCAAATCTGCTACAGGAAAT+TGG - chr8_4:48749567-48749586 Msa1329820:CDS 40.0%
CTGCTGCTACTACTACTAAT+AGG + chr8_4:48749710-48749729 None:intergenic 40.0%
CATATTTCTTCCTCCTGACC+AGG - chr8_4:48746151-48746170 Msa1329820:three_prime_UTR 45.0%
ATCTAGATAACACCCTGGTC+AGG + chr8_4:48746167-48746186 None:intergenic 45.0%
GGAGAAAGAGAGACAGAAGA+AGG - chr8_4:48746211-48746230 Msa1329820:three_prime_UTR 45.0%
GAACCTAAGATCATCCACAG+AGG - chr8_4:48746301-48746320 Msa1329820:exon 45.0%
ACCAACTTTGCTACCTTGCT+TGG - chr8_4:48746560-48746579 Msa1329820:CDS 45.0%
ACCAAGCAAGGTAGCAAAGT+TGG + chr8_4:48746564-48746583 None:intergenic 45.0%
!! AGAGAAGAAAGCACCAAGCA+AGG + chr8_4:48746576-48746595 None:intergenic 45.0%
CGACTAGGGTTGAATTTCAG+TGG + chr8_4:48746926-48746945 None:intergenic 45.0%
CTTACGGATCAAAGCGACTA+GGG + chr8_4:48746940-48746959 None:intergenic 45.0%
GCACCAACGCTTCAGATTAA+AGG + chr8_4:48747020-48747039 None:intergenic 45.0%
TCAAATGTGAGCTGGGCAAT+TGG - chr8_4:48747437-48747456 Msa1329820:intron 45.0%
!! AAAGAGCCACGAGAGGTATT+TGG - chr8_4:48748453-48748472 Msa1329820:CDS 45.0%
AAAAGGCCAAATACCTCTCG+TGG + chr8_4:48748462-48748481 None:intergenic 45.0%
ATGGTTCATCAGCTGATCCA+TGG - chr8_4:48748922-48748941 Msa1329820:intron 45.0%
TGTATGCTGCAAAGACTCCA+TGG + chr8_4:48748942-48748961 None:intergenic 45.0%
TGCACCAGGTATCTTGAAGT+TGG + chr8_4:48749102-48749121 None:intergenic 45.0%
! TGTGATGCCGCCTTCTTTTT+CGG + chr8_4:48749210-48749229 None:intergenic 45.0%
!!! GTCGATGTCTGGTTTTTGGT+TGG - chr8_4:48749364-48749383 Msa1329820:intron 45.0%
! GTTCCTCAGTTGATACTAGC+TGG - chr8_4:48749386-48749405 Msa1329820:intron 45.0%
!!! GGAGGGTCACTTTTCTATTG+TGG - chr8_4:48749485-48749504 Msa1329820:CDS 45.0%
! CTTTTCTATTGTGGCATGGC+AGG - chr8_4:48749494-48749513 Msa1329820:CDS 45.0%
AGTAGTAGTAGCAGCAGCAT+TGG - chr8_4:48749713-48749732 Msa1329820:CDS 45.0%
!! ATAAATAAATTAAAATTTGA+TGG + chr8_4:48747710-48747729 None:intergenic 5.0%
!!! AATATTTTAAATCAAATAAT+CGG + chr8_4:48748154-48748173 None:intergenic 5.0%
TAGATAACACCCTGGTCAGG+AGG + chr8_4:48746164-48746183 None:intergenic 50.0%
CAGCCTCTGTGGATGATCTT+AGG + chr8_4:48746307-48746326 None:intergenic 50.0%
CTAAGATCATCCACAGAGGC+TGG - chr8_4:48746305-48746324 Msa1329820:exon 50.0%
CCTTACGGATCAAAGCGACT+AGG + chr8_4:48746941-48746960 None:intergenic 50.0%
! CCTAGTCGCTTTGATCCGTA+AGG - chr8_4:48746938-48746957 Msa1329820:CDS 50.0%
TCATCCACCACACTGTGCAA+AGG - chr8_4:48747178-48747197 Msa1329820:intron 50.0%
CTTTCCTTTGCACAGTGTGG+TGG + chr8_4:48747185-48747204 None:intergenic 50.0%
GCACTTTCCTTTGCACAGTG+TGG + chr8_4:48747188-48747207 None:intergenic 50.0%
! CTAGTGATGGGACTACCACT+TGG + chr8_4:48747542-48747561 None:intergenic 50.0%
!! GAAAGCATTGGATGCTCAGC+AGG + chr8_4:48747614-48747633 None:intergenic 50.0%
GGATCAGCTGATGAACCATC+TGG + chr8_4:48748921-48748940 None:intergenic 50.0%
AAGACAGTGTAGGATGCACC+AGG + chr8_4:48749116-48749135 None:intergenic 50.0%
TCGGTGAATCTTCGGAGCAA+AGG + chr8_4:48749191-48749210 None:intergenic 50.0%
! GACGAAATCGCGCCTTTTCT+TGG + chr8_4:48749347-48749366 None:intergenic 50.0%
GATCATCCACAGAGGCTGGA+AGG - chr8_4:48746309-48746328 Msa1329820:exon 55.0%
! GTGAGCTGGGCAATTGGTCT+TGG - chr8_4:48747443-48747462 Msa1329820:intron 55.0%
GCATGACCTTCCAGCCTCTG+TGG + chr8_4:48746318-48746337 None:intergenic 60.0%
GGCGCGATTTCGTCGATGTC+TGG - chr8_4:48749353-48749372 Msa1329820:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 48746110 48749947 48746110 ID=Msa1329820;Name=Msa1329820
chr8_4 mRNA 48746110 48749947 48746110 ID=Msa1329820-mRNA-1;Parent=Msa1329820;Name=Msa1329820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=98|1|1|1|1|1|4|202|597
chr8_4 exon 48746110 48747185 48746110 ID=Msa1329820-mRNA-1:exon:14045;Parent=Msa1329820-mRNA-1
chr8_4 exon 48748361 48748920 48748361 ID=Msa1329820-mRNA-1:exon:14044;Parent=Msa1329820-mRNA-1
chr8_4 exon 48749405 48749622 48749405 ID=Msa1329820-mRNA-1:exon:14043;Parent=Msa1329820-mRNA-1
chr8_4 exon 48749708 48749947 48749708 ID=Msa1329820-mRNA-1:exon:14042;Parent=Msa1329820-mRNA-1
chr8_4 five_prime_UTR 48749850 48749947 48749850 ID=Msa1329820-mRNA-1:five_prime_utr;Parent=Msa1329820-mRNA-1
chr8_4 CDS 48749708 48749849 48749708 ID=Msa1329820-mRNA-1:cds;Parent=Msa1329820-mRNA-1
chr8_4 CDS 48749405 48749622 48749405 ID=Msa1329820-mRNA-1:cds;Parent=Msa1329820-mRNA-1
chr8_4 CDS 48748361 48748920 48748361 ID=Msa1329820-mRNA-1:cds;Parent=Msa1329820-mRNA-1
chr8_4 CDS 48746312 48747185 48746312 ID=Msa1329820-mRNA-1:cds;Parent=Msa1329820-mRNA-1
chr8_4 three_prime_UTR 48746110 48746311 48746110 ID=Msa1329820-mRNA-1:three_prime_utr;Parent=Msa1329820-mRNA-1
Gene Sequence

>Msa1329820

ATGGGAGAAAGAGAGACAGAAGAAGGAACAACAATGAAGACAATTGAGAAAGAAAACAACATGGAAAATAGTGAGAAACATGAAACAAATGATGAACCTAAGATCATCCACAGAGGCTGGAAGGTCATGCCTTTCATCATAGGAAATGAAACTTTTGAAAAATTAGGAGCCATTGGAACATTAGCAAACTTGTTGGTCTATCTTACAACTGTATTCAACCTGAAAAACATTACAGCTGCAAACATCATCAATATCTTCAGTGGCAGTACCAACTTTGCTACCTTGCTTGGTGCTTTCTTCTCTGATACATATTTTGGTCGCTACAATACATTAGCATTCTGCACAATCACTTCTTTTCTGGGATTACTTGGAATACAACTTACAGCAGTATTCAAGAATCTTCATCCACCACACTGTGCAAAGGAAAGTGCCACATGCAAAGAACCAACAACAGGACAAATGGCTTTTCTAATATCAGGATTTGGTTTACTGTTAATAGGTGCTGCAGGAGTTAGACCATGTAACTTAGCATTTGGTGTTGATCAATTCAATCCAAAAACAGATTCAGGAAAGAAAGGAATCAACAGTTTCTTCAATTGGTATTTCTTTACCTTCACTTTTGCACAAATGGTTTCTTTAACACTAATTGTGTATATACAATCAAATGTGAGCTGGGCAATTGGTCTTGGAATTCCTGCTGCTTTGATGTTAATAGCATGTGTGTTATTTTTCATGGGAGGTAAATTATATGTGAAAGTTAAACCAAGTGGTAGTCCCATCACTAGTATTTTTCAAGTCTTAGTGGTTGCAATCAAGAAAAGAAGACTTAGTCTACCTGCTGAGCATCCAATGCTTTCACTCTTTGATTATGTGCCACCCATGTCTATTAATTCAAAGCTTCCTTACACATATCAATTCAGGGTATTGGACAAAGCTGCAATGATAACATCACAAGACAAAATAAATCCAGATGGTTCATCAGCTGATCCATGGAGTCTTTGCAGCATACAACAAGTGGAAGAGTTGAAATGTTTGGTGAGAGTTTTACCTATATGGTTTTCAGCAATTTTGTACCATCTAGTTATTGTTCAGCAACACACACTTCTTGTTTTTCAAGCACTTCAATCAAATAGACGAATGGGAAACACCAACTTCAAGATACCTGGTGCATCCTACACTGTCTTCTTAATGTTAAGCATGACATTATGGTTACCAATCTATGATAGAATAGTTGTTCCTTTGCTCCGAAGATTCACCGAAAAAGAAGGCGGCATCACAGTCCTTCAAAGAATTGGTGTTGGAATATTTCTAGGTTTACTAAGCATACTTGTATCAGCATTTGTTGAAACACAAAGAAGACACTTAGCTTTAACTAAGCCTATTGGAATGCAACCAAGAAAAGGCGCGATTTCGTCGATGTCTGGTTTTTGGTTGGTTCCTCAGTTGATACTAGCTGGATTTGCTGAAACTTTTACTGCTGTTGGACAAATTGAATTTTACTATAAACAGTTTCCTGAGAATATGAAAAGCATTGGAGGGTCACTTTTCTATTGTGGCATGGCAGGTTCTAGTTATTTAAGTGCTTTTCTTGTTTCTGTTGTTCATAGAACAACTTCCAAATCTGCTACAGGAAATTGGTTACCAGAAGATCTTAATAAAGGGAGATTGGAATATTTTTATTACATGATTGCTGGGATAGAAGTCTTGAATTTTGTGTACTTTTTGATGTTTTCCAAATGGTACAAGTATAGAGAACCTATTAGTAGTAGTAGCAGCAGCATTGGTAGTCCATGA

Protein sequence

>Msa1329820

MGERETEEGTTMKTIEKENNMENSEKHETNDEPKIIHRGWKVMPFIIGNETFEKLGAIGTLANLLVYLTTVFNLKNITAANIINIFSGSTNFATLLGAFFSDTYFGRYNTLAFCTITSFLGLLGIQLTAVFKNLHPPHCAKESATCKEPTTGQMAFLISGFGLLLIGAAGVRPCNLAFGVDQFNPKTDSGKKGINSFFNWYFFTFTFAQMVSLTLIVYIQSNVSWAIGLGIPAALMLIACVLFFMGGKLYVKVKPSGSPITSIFQVLVVAIKKRRLSLPAEHPMLSLFDYVPPMSINSKLPYTYQFRVLDKAAMITSQDKINPDGSSADPWSLCSIQQVEELKCLVRVLPIWFSAILYHLVIVQQHTLLVFQALQSNRRMGNTNFKIPGASYTVFLMLSMTLWLPIYDRIVVPLLRRFTEKEGGITVLQRIGVGIFLGLLSILVSAFVETQRRHLALTKPIGMQPRKGAISSMSGFWLVPQLILAGFAETFTAVGQIEFYYKQFPENMKSIGGSLFYCGMAGSSYLSAFLVSVVHRTTSKSATGNWLPEDLNKGRLEYFYYMIAGIEVLNFVYFLMFSKWYKYREPISSSSSSIGSP*