Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653880 | RDY10913.1 | 82.215 | 298 | 18 | 3 | 1 | 298 | 1 | 263 | 1.54e-169 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653880 | sp|Q8VYN2|VAP42_ARATH | 58.055 | 329 | 73 | 6 | 1 | 298 | 1 | 295 | 2.63e-116 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0653880 | 0.805837 | 1.100852e-49 | -8.615850e-47 |
| Msa0005260 | Msa0653880 | 0.814090 | 1.838638e-51 | -8.615850e-47 |
| Msa0026630 | Msa0653880 | 0.801963 | 7.025227e-49 | -8.615850e-47 |
| Msa0043850 | Msa0653880 | 0.815056 | 1.123850e-51 | -8.615850e-47 |
| Msa0061220 | Msa0653880 | 0.810386 | 1.182543e-50 | -8.615850e-47 |
| Msa0090510 | Msa0653880 | 0.804914 | 1.718517e-49 | -8.615850e-47 |
| Msa0613110 | Msa0653880 | 0.826603 | 2.477844e-54 | -8.615850e-47 |
| Msa0613340 | Msa0653880 | 0.895386 | 1.007153e-75 | -8.615850e-47 |
| Msa0653670 | Msa0653880 | 0.812379 | 4.367877e-51 | -8.615850e-47 |
| Msa0653880 | Msa0662580 | 0.818984 | 1.473256e-52 | -8.615850e-47 |
| Msa0653880 | Msa0697590 | 0.813025 | 3.154127e-51 | -8.615850e-47 |
| Msa0653880 | Msa0708310 | 0.809911 | 1.497525e-50 | -8.615850e-47 |
| Msa0653880 | Msa0742430 | 0.802551 | 5.316710e-49 | -8.615850e-47 |
| Msa0653880 | Msa0823370 | 0.815252 | 1.017070e-51 | -8.615850e-47 |
| Msa0653880 | Msa0823540 | 0.833927 | 4.024885e-56 | -8.615850e-47 |
| Msa0653880 | Msa0862620 | 0.823034 | 1.721249e-53 | -8.615850e-47 |
| Msa0653880 | Msa1043120 | 0.801396 | 9.183053e-49 | -8.615850e-47 |
| Msa0653880 | Msa1070540 | 0.803442 | 3.479964e-49 | -8.615850e-47 |
| Msa0653880 | Msa1101240 | 0.800004 | 1.766173e-48 | -8.615850e-47 |
| Msa0653880 | Msa1208110 | 0.801205 | 1.005030e-48 | -8.615850e-47 |
| Msa0653880 | Msa1353890 | 0.817391 | 3.379249e-52 | -8.615850e-47 |
| Msa0653880 | Msa1364080 | 0.807149 | 5.818939e-50 | -8.615850e-47 |
| Msa0653880 | Msa1367530 | 0.802615 | 5.157643e-49 | -8.615850e-47 |
| Msa0653880 | Msa1390290 | 0.801280 | 9.701824e-49 | -8.615850e-47 |
| Msa0653880 | Msa1398900 | 0.811527 | 6.694803e-51 | -8.615850e-47 |
| Msa0137980 | Msa0653880 | 0.803963 | 2.712425e-49 | -8.615850e-47 |
| Msa0183910 | Msa0653880 | 0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0224130 | Msa0653880 | 0.808521 | 2.973320e-50 | -8.615850e-47 |
| Msa0364790 | Msa0653880 | 0.826459 | 2.681769e-54 | -8.615850e-47 |
| Msa0369920 | Msa0653880 | 0.808887 | 2.482683e-50 | -8.615850e-47 |
| Msa0412260 | Msa0653880 | 0.810719 | 1.002189e-50 | -8.615850e-47 |
| Msa0456770 | Msa0653880 | 0.810989 | 8.761091e-51 | -8.615850e-47 |
| Msa0240270 | Msa0653880 | 0.810593 | 1.067109e-50 | -8.615850e-47 |
| Msa0265270 | Msa0653880 | 0.809998 | 1.433839e-50 | -8.615850e-47 |
| Msa0277410 | Msa0653880 | 0.820645 | 6.149670e-53 | -8.615850e-47 |
| Msa0501410 | Msa0653880 | 0.808342 | 3.246331e-50 | -8.615850e-47 |
| Msa0524330 | Msa0653880 | 0.802775 | 4.779617e-49 | -8.615850e-47 |
| Msa0524440 | Msa0653880 | 0.810731 | 9.961238e-51 | -8.615850e-47 |
| Msa0574600 | Msa0653880 | 0.820727 | 5.887586e-53 | -8.615850e-47 |
| Msa0577490 | Msa0653880 | 0.811248 | 7.699477e-51 | -8.615850e-47 |
| Msa0577660 | Msa0653880 | 0.803298 | 3.726696e-49 | -8.615850e-47 |
| Msa0592330 | Msa0653880 | 0.805417 | 1.348250e-49 | -8.615850e-47 |
| Msa0600590 | Msa0653880 | 0.806101 | 9.685597e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653880 | MtrunA17_Chr4g0048491 | 86.288 | 299 | 7 | 2 | 1 | 298 | 1 | 266 | 6.06e-161 | 448 |
| Msa0653880 | MtrunA17_Chr2g0323731 | 61.842 | 304 | 77 | 4 | 1 | 298 | 1 | 271 | 1.31e-106 | 311 |
| Msa0653880 | MtrunA17_Chr2g0318581 | 62.846 | 253 | 57 | 4 | 49 | 298 | 25 | 243 | 9.82e-97 | 285 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653880 | AT4G21450.1 | 58.055 | 329 | 73 | 6 | 1 | 298 | 1 | 295 | 2.67e-117 | 339 |
| Msa0653880 | AT4G21450.3 | 54.598 | 348 | 74 | 7 | 1 | 298 | 1 | 314 | 8.55e-112 | 326 |
| Msa0653880 | AT4G05060.1 | 56.918 | 318 | 78 | 6 | 1 | 293 | 1 | 284 | 1.75e-102 | 301 |
| Msa0653880 | AT5G54110.1 | 57.244 | 283 | 81 | 4 | 16 | 294 | 16 | 262 | 4.38e-95 | 282 |
| Msa0653880 | AT4G21450.2 | 50.617 | 243 | 56 | 5 | 1 | 212 | 1 | 210 | 7.71e-64 | 200 |
| Msa0653880 | AT5G54110.2 | 51.244 | 201 | 58 | 4 | 16 | 212 | 16 | 180 | 1.38e-45 | 152 |
Find 78 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATCTAATGTAGCATTTA+AGG | 0.154803 | 4_3:-62132865 | Msa0653880:intron |
| AAATGCTACATTAGATTTAC+TGG | 0.228582 | 4_3:+62132869 | None:intergenic |
| CAGGTTTCTTCCGTGCTTCA+AGG | 0.310647 | 4_3:+62131778 | None:intergenic |
| TCAAGAGGAGTGTTACTGTT+AGG | 0.327375 | 4_3:+62135113 | None:intergenic |
| GATGCAGGGCCTAAAATTAT+TGG | 0.351535 | 4_3:-62131750 | Msa0653880:CDS |
| TTAGGTTCGGAGTGAGGTTT+GGG | 0.375172 | 4_3:+62135239 | None:intergenic |
| GGAAAGTAAAGTTTGTTAGA+AGG | 0.376948 | 4_3:+62135008 | None:intergenic |
| CTTAGGTTCGGAGTGAGGTT+TGG | 0.383229 | 4_3:+62135238 | None:intergenic |
| CAAGAGGAGTGTTACTGTTA+GGG | 0.393536 | 4_3:+62135114 | None:intergenic |
| TAAAATTATCTAACCAGCTC+GGG | 0.398885 | 4_3:+62132233 | None:intergenic |
| TGTAGATGAGCCAGGAAAAC+AGG | 0.420800 | 4_3:-62132919 | Msa0653880:intron |
| ATTTAAAATCATGAGTTTGA+AGG | 0.426290 | 4_3:-62132279 | Msa0653880:CDS |
| TTGAAGAAATTCCAAACCTT+AGG | 0.429466 | 4_3:+62135221 | None:intergenic |
| TTAGGCCCTGCATCTTCTGC+AGG | 0.429473 | 4_3:+62131759 | None:intergenic |
| CTCACAGGACTTGGACGCTC+TGG | 0.438074 | 4_3:+62132061 | None:intergenic |
| AACAGTAACACTCCTCTTGA+AGG | 0.439501 | 4_3:-62135110 | Msa0653880:CDS |
| GAGAAGAGTTTCAAAATCAC+AGG | 0.445545 | 4_3:-62131488 | Msa0653880:three_prime_UTR |
| AGTTGTTTCATGCGTCCTCC+TGG | 0.445612 | 4_3:-62132504 | Msa0653880:CDS |
| GAAATTCCAAACCTTAGGTT+CGG | 0.448162 | 4_3:+62135226 | None:intergenic |
| AATGACATTTATCTACATAA+AGG | 0.449589 | 4_3:+62131381 | None:intergenic |
| CTCACTCCGAACCTAAGGTT+TGG | 0.454205 | 4_3:-62135232 | Msa0653880:CDS |
| GCTTGAGACGACGTCGTGTT+GGG | 0.464165 | 4_3:+62135036 | None:intergenic |
| ATGAGCCAGGAAAACAGGTT+AGG | 0.467951 | 4_3:-62132914 | Msa0653880:CDS |
| TTCTGTATAGAATGTTGGTC+TGG | 0.475986 | 4_3:-62131536 | Msa0653880:exon |
| AAGATACCTTGCTAAGCAGC+AGG | 0.483964 | 4_3:-62131575 | Msa0653880:CDS |
| AGAAGACGACGTCGTGTTGG+TGG | 0.485495 | 4_3:+62135169 | None:intergenic |
| AAGAAACCTGCAGAAGATGC+AGG | 0.486887 | 4_3:-62131765 | Msa0653880:CDS |
| GGCGAGAGTATCATAGCAAC+CGG | 0.491969 | 4_3:-62132465 | Msa0653880:intron |
| CTATTTGTATGTAGAGTAGT+TGG | 0.498560 | 4_3:-62131245 | Msa0653880:three_prime_UTR |
| GTAGATTCTGTATAGAATGT+TGG | 0.505509 | 4_3:-62131541 | Msa0653880:exon |
| CCGTCTTGTGTAGATGAGCC+AGG | 0.506060 | 4_3:-62132927 | Msa0653880:intron |
| AGCTTGAGACGACGTCGTGT+TGG | 0.512822 | 4_3:+62135035 | None:intergenic |
| GTGAGGTTTGGGTTCAGCTA+CGG | 0.514019 | 4_3:+62135250 | None:intergenic |
| ATAAAATTATCTAACCAGCT+CGG | 0.529735 | 4_3:+62132232 | None:intergenic |
| ATCATGAGTTTGAAGGTCAA+AGG | 0.531786 | 4_3:-62132272 | Msa0653880:CDS |
| CTGGATAAATTAATATATGT+TGG | 0.534473 | 4_3:-62131517 | Msa0653880:three_prime_UTR |
| TTTGGGTTCAGCTACGGCCA+TGG | 0.535390 | 4_3:+62135256 | None:intergenic |
| AATTGATTACGTCCCCGAGC+TGG | 0.536261 | 4_3:-62132246 | Msa0653880:intron |
| GGGCCTAAAATTATTGGTGA+AGG | 0.537596 | 4_3:-62131744 | Msa0653880:CDS |
| GGTTCAGCTACGGCCATGGT+GGG | 0.537862 | 4_3:+62135260 | None:intergenic |
| CAAACCTCACTCCGAACCTA+AGG | 0.538817 | 4_3:-62135237 | Msa0653880:CDS |
| AACAGGTTAGGAGTGCCATC+AGG | 0.542734 | 4_3:-62132902 | Msa0653880:CDS |
| AACAGAAGACGACGTCGTGT+TGG | 0.544962 | 4_3:+62135166 | None:intergenic |
| TGAAAGAGGAAAATGAAGGA+AGG | 0.546401 | 4_3:+62135307 | None:intergenic |
| GAAGTGTTAGAATTGCGAAA+AGG | 0.547722 | 4_3:+62135194 | None:intergenic |
| AGGGCTTGTCATTGACGAAT+GGG | 0.556311 | 4_3:-62131724 | Msa0653880:intron |
| CCAGGTGCAAGGATAGCTCC+AGG | 0.557167 | 4_3:+62132486 | None:intergenic |
| AAATCTGCTCAACTGCCACC+TGG | 0.560385 | 4_3:+62132104 | None:intergenic |
| CCTGGAGCTATCCTTGCACC+TGG | 0.563540 | 4_3:-62132486 | Msa0653880:CDS |
| TAGTAAAAGTAAGAATAGAC+AGG | 0.563926 | 4_3:+62132669 | None:intergenic |
| AGGTTTCTTCCGTGCTTCAA+GGG | 0.567437 | 4_3:+62131779 | None:intergenic |
| TGATACTCTCGCCAGGTGCA+AGG | 0.572027 | 4_3:+62132475 | None:intergenic |
| GTTGCTATGATACTCTCGCC+AGG | 0.577145 | 4_3:+62132468 | None:intergenic |
| GAAAGAGGAAAATGAAGGAA+GGG | 0.577841 | 4_3:+62135308 | None:intergenic |
| GGCCTAAAATTATTGGTGAA+GGG | 0.578667 | 4_3:-62131743 | Msa0653880:CDS |
| CATCGCCCTGCTGCTTAGCA+AGG | 0.579673 | 4_3:+62131569 | None:intergenic |
| GGGTTCAGCTACGGCCATGG+TGG | 0.579921 | 4_3:+62135259 | None:intergenic |
| ATTGTAAAACGTGAAAGTCA+AGG | 0.584553 | 4_3:-62135340 | Msa0653880:five_prime_UTR |
| AAGGGCTTGTCATTGACGAA+TGG | 0.585970 | 4_3:-62131725 | Msa0653880:CDS |
| AAAATGAAGGAAGGGAAACG+AGG | 0.594661 | 4_3:+62135316 | None:intergenic |
| CAAACCTTAGGTTCGGAGTG+AGG | 0.596942 | 4_3:+62135233 | None:intergenic |
| ATGATGAAAGAGGAAAATGA+AGG | 0.598944 | 4_3:+62135303 | None:intergenic |
| CTGATGCTGCCCTTGAAGCA+CGG | 0.601872 | 4_3:-62131788 | Msa0653880:CDS |
| TGCTAAGCAGCAGGGCGATG+TGG | 0.604162 | 4_3:-62131566 | Msa0653880:CDS |
| AATGAAAAGCCAGAAAAGAG+TGG | 0.610602 | 4_3:-62132308 | Msa0653880:CDS |
| AGAAACCTGCAGAAGATGCA+GGG | 0.611107 | 4_3:-62131764 | Msa0653880:CDS |
| GTTTGATGAGCAGAAAGACC+AGG | 0.616359 | 4_3:-62132122 | Msa0653880:CDS |
| GTGAAAACTATGTGTGGGTG+TGG | 0.618633 | 4_3:-62131411 | Msa0653880:three_prime_UTR |
| TGAAAAGTGAAAACTATGTG+TGG | 0.620556 | 4_3:-62131417 | Msa0653880:three_prime_UTR |
| TGTGAAGTTGAACCTTCAAG+AGG | 0.629338 | 4_3:+62135098 | None:intergenic |
| AGATACCTTGCTAAGCAGCA+GGG | 0.656370 | 4_3:-62131574 | Msa0653880:CDS |
| AAAATTATCTAACCAGCTCG+GGG | 0.659211 | 4_3:+62132234 | None:intergenic |
| GAAAAGTGAAAACTATGTGT+GGG | 0.667787 | 4_3:-62131416 | Msa0653880:three_prime_UTR |
| AAATGAAGGAAGGGAAACGA+GGG | 0.672329 | 4_3:+62135317 | None:intergenic |
| AGAAGAGTTTCAAAATCACA+GGG | 0.682298 | 4_3:-62131487 | Msa0653880:three_prime_UTR |
| TGATGAGCAGAAAGACCAGG+TGG | 0.693468 | 4_3:-62132119 | Msa0653880:CDS |
| AAACAGAGAGACACCCACCA+TGG | 0.721309 | 4_3:-62135273 | Msa0653880:exon |
| GGTGCAAGGATAGCTCCAGG+AGG | 0.793325 | 4_3:+62132489 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTCAATTTAATTAGA+GGG | - | chr4_3:62131755-62131774 | Msa0653880:CDS | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132827-62132846 | Msa0653880:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132827-62132846 | Msa0653880:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132827-62132846 | Msa0653880:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132827-62132846 | Msa0653880:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132827-62132846 | Msa0653880:intron | 100.0% |
| !! | GTTTATTTCAATTTAATTAG+AGG | - | chr4_3:62131754-62131773 | Msa0653880:CDS | 15.0% |
| !!! | TATCTATAACTATAAACTTT+TGG | - | chr4_3:62131809-62131828 | Msa0653880:CDS | 15.0% |
| !!! | ATCTATAACTATAAACTTTT+GGG | - | chr4_3:62131810-62131829 | Msa0653880:CDS | 15.0% |
| !! | ATGTTACATGATAATAAATA+GGG | + | chr4_3:62133810-62133829 | None:intergenic | 15.0% |
| !! | AATGTTACATGATAATAAAT+AGG | + | chr4_3:62133811-62133830 | None:intergenic | 15.0% |
| !!! | TTATTTAGATTTGTTTTCTA+AGG | - | chr4_3:62134449-62134468 | Msa0653880:intron | 15.0% |
| !! | AATTGATTGTATATTACTTA+TGG | - | chr4_3:62134753-62134772 | Msa0653880:intron | 15.0% |
| !! | ATTGATTGTATATTACTTAT+GGG | - | chr4_3:62134754-62134773 | Msa0653880:intron | 15.0% |
| !!! | ATTTTTCTTCATTAAGATTT+TGG | - | chr4_3:62134782-62134801 | Msa0653880:intron | 15.0% |
| !! | GTATGCAATTTAATTGTTAT+TGG | - | chr4_3:62131677-62131696 | Msa0653880:intron | 20.0% |
| !! | AAACCAGATAAAAAAGTTTA+GGG | + | chr4_3:62131986-62132005 | None:intergenic | 20.0% |
| !! | TAAACCAGATAAAAAAGTTT+AGG | + | chr4_3:62131987-62132006 | None:intergenic | 20.0% |
| !! | TTATAATGTATGGAAATTGA+GGG | + | chr4_3:62132225-62132244 | None:intergenic | 20.0% |
| !! | TCAATTTCCATACATTATAA+GGG | - | chr4_3:62132225-62132244 | Msa0653880:intron | 20.0% |
| !!! | TCCATATATGATTTTAGTTT+TGG | - | chr4_3:62132314-62132333 | Msa0653880:CDS | 20.0% |
| !!! | CCATATATGATTTTAGTTTT+GGG | - | chr4_3:62132315-62132334 | Msa0653880:CDS | 20.0% |
| !!! | AAGATCGTTTTTTCATTTTT+TGG | + | chr4_3:62132581-62132600 | None:intergenic | 20.0% |
| !!! | AAACTGTAAATTTTGAAAGT+AGG | - | chr4_3:62133456-62133475 | Msa0653880:intron | 20.0% |
| !! | TAAATCTAATGTAGCATTTA+AGG | - | chr4_3:62133755-62133774 | Msa0653880:intron | 20.0% |
| !! | TGTTACATGATAATAAATAG+GGG | + | chr4_3:62133809-62133828 | None:intergenic | 20.0% |
| !! | ATATAAAGACGTATTAAGTA+GGG | + | chr4_3:62133872-62133891 | None:intergenic | 20.0% |
| !!! | TGTATTTATTATACTAGCTT+TGG | + | chr4_3:62134224-62134243 | None:intergenic | 20.0% |
| !! | AAGCTAGTATAATAAATACA+AGG | - | chr4_3:62134224-62134243 | Msa0653880:intron | 20.0% |
| !!! | ATTTAAAATCATGAGTTTGA+AGG | - | chr4_3:62134341-62134360 | Msa0653880:intron | 20.0% |
| !!! | TTTCAGTGTACTTTTTTATT+TGG | - | chr4_3:62134591-62134610 | Msa0653880:intron | 20.0% |
| !!! | TTCAGTGTACTTTTTTATTT+GGG | - | chr4_3:62134592-62134611 | Msa0653880:intron | 20.0% |
| !!! | AATTATCTGTTACTTTATTG+TGG | - | chr4_3:62134668-62134687 | Msa0653880:intron | 20.0% |
| !!! | ATTATCTGTTACTTTATTGT+GGG | - | chr4_3:62134669-62134688 | Msa0653880:intron | 20.0% |
| !! | CTGGATAAATTAATATATGT+TGG | - | chr4_3:62135103-62135122 | Msa0653880:CDS | 20.0% |
| !! | AATGACATTTATCTACATAA+AGG | + | chr4_3:62135242-62135261 | None:intergenic | 20.0% |
| !!! | ATAAATGTCATTATGTTTTC+AGG | - | chr4_3:62135250-62135269 | Msa0653880:CDS | 20.0% |
| !!! | TTTTGAGAAAATGATGAAAG+AGG | + | chr4_3:62131330-62131349 | None:intergenic | 25.0% |
| !! | CAAATGCAGTAACATATTTT+TGG | + | chr4_3:62131924-62131943 | None:intergenic | 25.0% |
| ! | CAAAAATATGTTACTGCATT+TGG | - | chr4_3:62131922-62131941 | Msa0653880:intron | 25.0% |
| !!! | TTTCCCTAAACTTTTTTATC+TGG | - | chr4_3:62131980-62131999 | Msa0653880:intron | 25.0% |
| ! | AATACTTTGTGAAGTAGTAT+TGG | + | chr4_3:62132160-62132179 | None:intergenic | 25.0% |
| !! | GCTTTCAATTTTTCCATTTT+CGG | + | chr4_3:62132184-62132203 | None:intergenic | 25.0% |
| ! | CTTATAATGTATGGAAATTG+AGG | + | chr4_3:62132226-62132245 | None:intergenic | 25.0% |
| ! | CTCAATTTCCATACATTATA+AGG | - | chr4_3:62132224-62132243 | Msa0653880:intron | 25.0% |
| ! | AAAATTTAGTTAGAGAACGA+TGG | - | chr4_3:62132291-62132310 | Msa0653880:CDS | 25.0% |
| ! | CCCAAAACTAAAATCATATA+TGG | + | chr4_3:62132318-62132337 | None:intergenic | 25.0% |
| !! | AAAAAACGATCTTTTCTCTT+TGG | - | chr4_3:62132588-62132607 | Msa0653880:intron | 25.0% |
| !! | AAAAACGATCTTTTCTCTTT+GGG | - | chr4_3:62132589-62132608 | Msa0653880:intron | 25.0% |
| ! | GTCACAGCTAATATAAATTA+GGG | - | chr4_3:62133051-62133070 | Msa0653880:intron | 25.0% |
| ! | ATTACTGTACACACAATTTA+TGG | - | chr4_3:62133157-62133176 | Msa0653880:intron | 25.0% |
| ! | ACTAAGCAGTTAAATTTGAA+TGG | - | chr4_3:62133285-62133304 | Msa0653880:intron | 25.0% |
| !!! | ACTAAGATACCAAGTTTTAA+TGG | - | chr4_3:62133425-62133444 | Msa0653880:intron | 25.0% |
| !! | CTAAAAGTACATACAACATT+AGG | + | chr4_3:62133539-62133558 | None:intergenic | 25.0% |
| !! | CTAATGTTGTATGTACTTTT+AGG | - | chr4_3:62133537-62133556 | Msa0653880:intron | 25.0% |
| !!! | TTTTAGGTCCATAAATACAT+AGG | - | chr4_3:62133553-62133572 | Msa0653880:intron | 25.0% |
| ! | AAACAAAATTGAGTAAGAGA+AGG | + | chr4_3:62133661-62133680 | None:intergenic | 25.0% |
| ! | AAATGCTACATTAGATTTAC+TGG | + | chr4_3:62133754-62133773 | None:intergenic | 25.0% |
| ! | ATAAATAGGGGTAAATAAAC+AGG | + | chr4_3:62133797-62133816 | None:intergenic | 25.0% |
| ! | TATAAAGACGTATTAAGTAG+GGG | + | chr4_3:62133871-62133890 | None:intergenic | 25.0% |
| ! | CATATAAAGACGTATTAAGT+AGG | + | chr4_3:62133873-62133892 | None:intergenic | 25.0% |
| ! | TAGTAAAAGTAAGAATAGAC+AGG | + | chr4_3:62133954-62133973 | None:intergenic | 25.0% |
| !! | CCAACACTAATTTAGAATAT+AGG | + | chr4_3:62134033-62134052 | None:intergenic | 25.0% |
| ! | CCTATATTCTAAATTAGTGT+TGG | - | chr4_3:62134030-62134049 | Msa0653880:intron | 25.0% |
| !! | TTTCTCTACATATTCTTTTC+TGG | - | chr4_3:62134192-62134211 | Msa0653880:intron | 25.0% |
| !! | TTCTCTACATATTCTTTTCT+GGG | - | chr4_3:62134193-62134212 | Msa0653880:intron | 25.0% |
| ! | ATAAAATTATCTAACCAGCT+CGG | + | chr4_3:62134391-62134410 | None:intergenic | 25.0% |
| !!! | CTGAAATTTTTTTTACTCAC+AGG | + | chr4_3:62134577-62134596 | None:intergenic | 25.0% |
| !!! | TTTTATTTGGGCAATTTTTG+TGG | - | chr4_3:62134604-62134623 | Msa0653880:intron | 25.0% |
| !!! | AGATTTTGGAAAAATTGAAG+CGG | - | chr4_3:62134796-62134815 | Msa0653880:intron | 25.0% |
| !! | CTTTCTGAAAAAACATAATC+AGG | + | chr4_3:62135015-62135034 | None:intergenic | 25.0% |
| !!! | TTATGTTTTTTCAGAAAGAG+AGG | - | chr4_3:62135017-62135036 | Msa0653880:CDS | 25.0% |
| !! | CTTTTTCTTGGAATATTTTC+AGG | - | chr4_3:62135157-62135176 | Msa0653880:CDS | 25.0% |
| ATTGTAAAACGTGAAAGTCA+AGG | - | chr4_3:62131280-62131299 | Msa0653880:three_prime_UTR | 30.0% | |
| ATGATGAAAGAGGAAAATGA+AGG | + | chr4_3:62131320-62131339 | None:intergenic | 30.0% | |
| TTGAAGAAATTCCAAACCTT+AGG | + | chr4_3:62131402-62131421 | None:intergenic | 30.0% | |
| !! | GGAAAGTAAAGTTTGTTAGA+AGG | + | chr4_3:62131615-62131634 | None:intergenic | 30.0% |
| GAATTCTTGCCTGTTTAAAA+AGG | - | chr4_3:62132007-62132026 | Msa0653880:intron | 30.0% | |
| ! | TCAACCATTCCTTTTTAAAC+AGG | + | chr4_3:62132019-62132038 | None:intergenic | 30.0% |
| ! | TCACAAAGTATTTCCGAAAA+TGG | - | chr4_3:62132168-62132187 | Msa0653880:intron | 30.0% |
| AAAAAGGCCCTTATAATGTA+TGG | + | chr4_3:62132235-62132254 | None:intergenic | 30.0% | |
| AGATTAAAATCTAACGCCTA+AGG | + | chr4_3:62132261-62132280 | None:intergenic | 30.0% | |
| !!! | TATGATTTTAGTTTTGGGTC+AGG | - | chr4_3:62132320-62132339 | Msa0653880:CDS | 30.0% |
| CATATAGTACATTCATCACT+TGG | + | chr4_3:62132356-62132375 | None:intergenic | 30.0% | |
| ! | TTCTTTTTACCAACATAGTG+TGG | - | chr4_3:62132392-62132411 | Msa0653880:intron | 30.0% |
| !!! | TTTCATTTTTTGGTTACCCA+TGG | + | chr4_3:62132571-62132590 | None:intergenic | 30.0% |
| ATCAGAGAAGACAACATTTA+AGG | - | chr4_3:62132634-62132653 | Msa0653880:CDS | 30.0% | |
| ! | AACATTTAAGGTCAGTGTTA+AGG | - | chr4_3:62132646-62132665 | Msa0653880:CDS | 30.0% |
| AGCTGTCGTAACTATTATAA+CGG | + | chr4_3:62132724-62132743 | None:intergenic | 30.0% | |
| GGTCACAGCTAATATAAATT+AGG | - | chr4_3:62133050-62133069 | Msa0653880:intron | 30.0% | |
| CTAATATAAATTAGGGAGCA+AGG | - | chr4_3:62133058-62133077 | Msa0653880:intron | 30.0% | |
| TTGAAAGTAGGTCAAACAAA+TGG | - | chr4_3:62133468-62133487 | Msa0653880:intron | 30.0% | |
| TGAAAGTAGGTCAAACAAAT+GGG | - | chr4_3:62133469-62133488 | Msa0653880:intron | 30.0% | |
| TGAATCTGCCTATGTATTTA+TGG | + | chr4_3:62133564-62133583 | None:intergenic | 30.0% | |
| TAAATACATAGGCAGATTCA+TGG | - | chr4_3:62133564-62133583 | Msa0653880:intron | 30.0% | |
| AAGTAGGGGAATAAATAAAC+AGG | + | chr4_3:62133857-62133876 | None:intergenic | 30.0% | |
| !!! | TCTGGCTTTTCATTATTTTC+TGG | + | chr4_3:62134306-62134325 | None:intergenic | 30.0% |
| TAAAATTATCTAACCAGCTC+GGG | + | chr4_3:62134390-62134409 | None:intergenic | 30.0% | |
| TTCCAGGCAGAAAAAATTAA+TGG | + | chr4_3:62134475-62134494 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTACTCACAGGACT+TGG | + | chr4_3:62134571-62134590 | None:intergenic | 30.0% |
| ! | CAAATTGCAATACTCACTTT+TGG | - | chr4_3:62134957-62134976 | Msa0653880:intron | 30.0% |
| GTAGATTCTGTATAGAATGT+TGG | - | chr4_3:62135079-62135098 | Msa0653880:CDS | 30.0% | |
| AGAAGAGTTTCAAAATCACA+GGG | - | chr4_3:62135133-62135152 | Msa0653880:CDS | 30.0% | |
| !!! | TTGGAATATTTTCAGGTGAA+TGG | - | chr4_3:62135164-62135183 | Msa0653880:CDS | 30.0% |
| TGAAAAGTGAAAACTATGTG+TGG | - | chr4_3:62135203-62135222 | Msa0653880:CDS | 30.0% | |
| GAAAAGTGAAAACTATGTGT+GGG | - | chr4_3:62135204-62135223 | Msa0653880:CDS | 30.0% | |
| !! | CATTATGTTTTCAGGCTTTT+TGG | - | chr4_3:62135258-62135277 | Msa0653880:exon | 30.0% |
| CTATTTGTATGTAGAGTAGT+TGG | - | chr4_3:62135375-62135394 | Msa0653880:five_prime_UTR | 30.0% | |
| GAAAGAGGAAAATGAAGGAA+GGG | + | chr4_3:62131315-62131334 | None:intergenic | 35.0% | |
| TGAAAGAGGAAAATGAAGGA+AGG | + | chr4_3:62131316-62131335 | None:intergenic | 35.0% | |
| GAAATTCCAAACCTTAGGTT+CGG | + | chr4_3:62131397-62131416 | None:intergenic | 35.0% | |
| ! | GAAGTGTTAGAATTGCGAAA+AGG | + | chr4_3:62131429-62131448 | None:intergenic | 35.0% |
| ! | GGTTATGATGATGATGATGA+AGG | + | chr4_3:62131488-62131507 | None:intergenic | 35.0% |
| AAATGAGCAGCATACATACA+AGG | + | chr4_3:62131636-62131655 | None:intergenic | 35.0% | |
| CTTCTAAACTTGTGCCTTAA+GGG | - | chr4_3:62131945-62131964 | Msa0653880:intron | 35.0% | |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr4_3:62131962-62131981 | None:intergenic | 35.0% |
| CTTGCCTGTTTAAAAAGGAA+TGG | - | chr4_3:62132012-62132031 | Msa0653880:intron | 35.0% | |
| !! | TGGTTGACTTGTTTATGTTC+TGG | - | chr4_3:62132032-62132051 | Msa0653880:intron | 35.0% |
| GTGAATAAGTGAAATGTCAC+AGG | + | chr4_3:62132116-62132135 | None:intergenic | 35.0% | |
| !! | CGTACGAAAGATAACTTGTT+AGG | - | chr4_3:62132477-62132496 | Msa0653880:CDS | 35.0% |
| !! | GAAAGATAACTTGTTAGGAG+AGG | - | chr4_3:62132482-62132501 | Msa0653880:CDS | 35.0% |
| ATGTTGTCTTCTCTGATTGA+CGG | + | chr4_3:62132631-62132650 | None:intergenic | 35.0% | |
| ! | AGGTATTTTGTATGACATCC+TGG | + | chr4_3:62132801-62132820 | None:intergenic | 35.0% |
| GGATGTCATACAAAATACCT+CGG | - | chr4_3:62132801-62132820 | Msa0653880:intron | 35.0% | |
| GATGTCATACAAAATACCTC+GGG | - | chr4_3:62132802-62132821 | Msa0653880:intron | 35.0% | |
| ATGTCATACAAAATACCTCG+GGG | - | chr4_3:62132803-62132822 | Msa0653880:intron | 35.0% | |
| TCATGTGACTAAAAAAGGGA+AGG | + | chr4_3:62132940-62132959 | None:intergenic | 35.0% | |
| GCAGTCATGTGACTAAAAAA+GGG | + | chr4_3:62132944-62132963 | None:intergenic | 35.0% | |
| AGCAGTCATGTGACTAAAAA+AGG | + | chr4_3:62132945-62132964 | None:intergenic | 35.0% | |
| ATTTATATTAGCTGTGACCG+AGG | + | chr4_3:62133049-62133068 | None:intergenic | 35.0% | |
| AGTAACTTCCATTGCTAACA+AGG | + | chr4_3:62133327-62133346 | None:intergenic | 35.0% | |
| TGTTAGCAATGGAAGTTACT+AGG | - | chr4_3:62133327-62133346 | Msa0653880:intron | 35.0% | |
| GTTAGCAATGGAAGTTACTA+GGG | - | chr4_3:62133328-62133347 | Msa0653880:intron | 35.0% | |
| GCATAAAATGACCAATCATG+AGG | + | chr4_3:62133636-62133655 | None:intergenic | 35.0% | |
| !! | ACTGGTGTTTTTAATCCTGA+TGG | + | chr4_3:62133736-62133755 | None:intergenic | 35.0% |
| !! | ATATGCAGTTTTTGTTGTCG+CGG | - | chr4_3:62133904-62133923 | Msa0653880:intron | 35.0% |
| ! | TTACTATGTCACTGTTTTGC+AGG | - | chr4_3:62133968-62133987 | Msa0653880:intron | 35.0% |
| AGAAATCGAATATTGCCTAC+CGG | + | chr4_3:62134177-62134196 | None:intergenic | 35.0% | |
| AATGAAAAGCCAGAAAAGAG+TGG | - | chr4_3:62134312-62134331 | Msa0653880:intron | 35.0% | |
| ! | AATTTGAGTCCACTCTTTTC+TGG | + | chr4_3:62134324-62134343 | None:intergenic | 35.0% |
| ATCATGAGTTTGAAGGTCAA+AGG | - | chr4_3:62134348-62134367 | Msa0653880:intron | 35.0% | |
| AAAATTATCTAACCAGCTCG+GGG | + | chr4_3:62134389-62134408 | None:intergenic | 35.0% | |
| AACTAGTGCAGAAAGAACAA+AGG | + | chr4_3:62134643-62134662 | None:intergenic | 35.0% | |
| GGCCTAAAATTATTGGTGAA+GGG | - | chr4_3:62134877-62134896 | Msa0653880:intron | 35.0% | |
| ! | AGCCCTTCACCAATAATTTT+AGG | + | chr4_3:62134882-62134901 | None:intergenic | 35.0% |
| !!! | TGTTTTTTCAGAAAGAGAGG+AGG | - | chr4_3:62135020-62135039 | Msa0653880:CDS | 35.0% |
| !!! | GTTTTTTCAGAAAGAGAGGA+GGG | - | chr4_3:62135021-62135040 | Msa0653880:CDS | 35.0% |
| TTCTGTATAGAATGTTGGTC+TGG | - | chr4_3:62135084-62135103 | Msa0653880:CDS | 35.0% | |
| GAGAAGAGTTTCAAAATCAC+AGG | - | chr4_3:62135132-62135151 | Msa0653880:CDS | 35.0% | |
| ! | AAATCACAGGGTCTTTTTCT+TGG | - | chr4_3:62135145-62135164 | Msa0653880:CDS | 35.0% |
| !!! | TTTTCAGGCTTTTTGGTTTG+TGG | - | chr4_3:62135265-62135284 | Msa0653880:exon | 35.0% |
| ! | GATGTCAATCTGTTTTGCTA+TGG | - | chr4_3:62135350-62135369 | Msa0653880:five_prime_UTR | 35.0% |
| AAATGAAGGAAGGGAAACGA+GGG | + | chr4_3:62131306-62131325 | None:intergenic | 40.0% | |
| AAAATGAAGGAAGGGAAACG+AGG | + | chr4_3:62131307-62131326 | None:intergenic | 40.0% | |
| !! | CAAGAGGAGTGTTACTGTTA+GGG | + | chr4_3:62131509-62131528 | None:intergenic | 40.0% |
| !! | TCAAGAGGAGTGTTACTGTT+AGG | + | chr4_3:62131510-62131529 | None:intergenic | 40.0% |
| AACAGTAACACTCCTCTTGA+AGG | - | chr4_3:62131510-62131529 | Msa0653880:three_prime_UTR | 40.0% | |
| TGTGAAGTTGAACCTTCAAG+AGG | + | chr4_3:62131525-62131544 | None:intergenic | 40.0% | |
| !! | TGGGTCATGTTAACTTGTGT+CGG | - | chr4_3:62131829-62131848 | Msa0653880:intron | 40.0% |
| GCTTCTAAACTTGTGCCTTA+AGG | - | chr4_3:62131944-62131963 | Msa0653880:intron | 40.0% | |
| AGCTCAGTTCGTTAGATCAT+TGG | - | chr4_3:62132084-62132103 | Msa0653880:CDS | 40.0% | |
| !!! | TAAGGGCCTTTTTTGTCCTT+AGG | - | chr4_3:62132242-62132261 | Msa0653880:intron | 40.0% |
| CTAACGCCTAAGGACAAAAA+AGG | + | chr4_3:62132251-62132270 | None:intergenic | 40.0% | |
| TGCTTAAGACACTCGGTTAT+CGG | + | chr4_3:62132427-62132446 | None:intergenic | 40.0% | |
| GACTACATGCTTAAGACACT+CGG | + | chr4_3:62132434-62132453 | None:intergenic | 40.0% | |
| ! | AAGGGCAAAGTGTTTGAGTA+AGG | + | chr4_3:62132674-62132693 | None:intergenic | 40.0% |
| ACTCCCATATTCGAGGAATA+GGG | - | chr4_3:62132889-62132908 | Msa0653880:CDS | 40.0% | |
| GACTAAAAAAGGGAAGGACT+TGG | + | chr4_3:62132934-62132953 | None:intergenic | 40.0% | |
| GTGAACGTGATGATCTTTAG+AGG | + | chr4_3:62133086-62133105 | None:intergenic | 40.0% | |
| CCACAACATATGCACACAAT+AGG | + | chr4_3:62133207-62133226 | None:intergenic | 40.0% | |
| CCTATTGTGTGCATATGTTG+TGG | - | chr4_3:62133204-62133223 | Msa0653880:intron | 40.0% | |
| ATTGTGTGCATATGTTGTGG+AGG | - | chr4_3:62133207-62133226 | Msa0653880:intron | 40.0% | |
| CAATACGCTAGAGACTAGAA+AGG | - | chr4_3:62133250-62133269 | Msa0653880:intron | 40.0% | |
| ATGCCTTACCTTGTTAGCAA+TGG | - | chr4_3:62133316-62133335 | Msa0653880:intron | 40.0% | |
| CTTCCATTGCTAACAAGGTA+AGG | + | chr4_3:62133322-62133341 | None:intergenic | 40.0% | |
| ! | GGACGCATGAAACAACTTTT+TGG | + | chr4_3:62134113-62134132 | None:intergenic | 40.0% |
| TGCTCTACAAACTTGAACAC+TGG | + | chr4_3:62134282-62134301 | None:intergenic | 40.0% | |
| !!! | GGCCATTAATTTTTTCTGCC+TGG | - | chr4_3:62134470-62134489 | Msa0653880:intron | 40.0% |
| GATGCAGGGCCTAAAATTAT+TGG | - | chr4_3:62134870-62134889 | Msa0653880:intron | 40.0% | |
| GGGCCTAAAATTATTGGTGA+AGG | - | chr4_3:62134876-62134895 | Msa0653880:intron | 40.0% | |
| TTAGGTTCGGAGTGAGGTTT+GGG | + | chr4_3:62131384-62131403 | None:intergenic | 45.0% | |
| !! | GGGTCATGTTAACTTGTGTC+GGG | - | chr4_3:62131830-62131849 | Msa0653880:intron | 45.0% |
| CCAATTGTGCCACACTATGT+TGG | + | chr4_3:62132404-62132423 | None:intergenic | 45.0% | |
| CCAACATAGTGTGGCACAAT+TGG | - | chr4_3:62132401-62132420 | Msa0653880:intron | 45.0% | |
| GTAGTCATGTGTTCGATCCA+TGG | - | chr4_3:62132448-62132467 | Msa0653880:intron | 45.0% | |
| AGGTACGGAGATCCACTTAA+GGG | + | chr4_3:62132513-62132532 | None:intergenic | 45.0% | |
| GAGACTAATCCTTCGAGGTA+CGG | + | chr4_3:62132528-62132547 | None:intergenic | 45.0% | |
| !! | GTACCTCGAAGGATTAGTCT+CGG | - | chr4_3:62132527-62132546 | Msa0653880:CDS | 45.0% |
| !! | TACCTCGAAGGATTAGTCTC+GGG | - | chr4_3:62132528-62132547 | Msa0653880:CDS | 45.0% |
| !!! | AAGGATTAGTCTCGGGCTTT+TGG | - | chr4_3:62132535-62132554 | Msa0653880:intron | 45.0% |
| TCATACAAAATACCTCGGGG+TGG | - | chr4_3:62132806-62132825 | Msa0653880:intron | 45.0% | |
| CATACAAAATACCTCGGGGT+GGG | - | chr4_3:62132807-62132826 | Msa0653880:intron | 45.0% | |
| ATACAAAATACCTCGGGGTG+GGG | - | chr4_3:62132808-62132827 | Msa0653880:intron | 45.0% | |
| TCAATCAAGCTATGTGGCTG+TGG | + | chr4_3:62132858-62132877 | None:intergenic | 45.0% | |
| AGCCACATAGCTTGATTGAG+CGG | - | chr4_3:62132859-62132878 | Msa0653880:intron | 45.0% | |
| ATCCGCTCAATCAAGCTATG+TGG | + | chr4_3:62132864-62132883 | None:intergenic | 45.0% | |
| ATCCTTGACTCCCATATTCG+AGG | - | chr4_3:62132882-62132901 | Msa0653880:CDS | 45.0% | |
| TTCCTCGAATATGGGAGTCA+AGG | + | chr4_3:62132887-62132906 | None:intergenic | 45.0% | |
| GACTCCCATATTCGAGGAAT+AGG | - | chr4_3:62132888-62132907 | Msa0653880:CDS | 45.0% | |
| GAGCCCTATTCCTCGAATAT+GGG | + | chr4_3:62132895-62132914 | None:intergenic | 45.0% | |
| ACTTGGTCGCATCATGATGT+GGG | + | chr4_3:62132917-62132936 | None:intergenic | 45.0% | |
| ! | AGTCACATGACTGCTGATTG+AGG | - | chr4_3:62132950-62132969 | Msa0653880:intron | 45.0% |
| ! | GTCACATGACTGCTGATTGA+GGG | - | chr4_3:62132951-62132970 | Msa0653880:intron | 45.0% |
| ! | TCACATGACTGCTGATTGAG+GGG | - | chr4_3:62132952-62132971 | Msa0653880:intron | 45.0% |
| TATATTAGCTGTGACCGAGG+AGG | + | chr4_3:62133046-62133065 | None:intergenic | 45.0% | |
| CATATGTTGTGGAGGTTGAG+AGG | - | chr4_3:62133215-62133234 | Msa0653880:intron | 45.0% | |
| !! | ACCAAGTTTTAATGGCTGCG+CGG | - | chr4_3:62133433-62133452 | Msa0653880:intron | 45.0% |
| CGAGTACTTCTCCTCATGAT+TGG | - | chr4_3:62133622-62133641 | Msa0653880:intron | 45.0% | |
| TGTAGATGAGCCAGGAAAAC+AGG | - | chr4_3:62133701-62133720 | Msa0653880:intron | 45.0% | |
| ATGAGCCAGGAAAACAGGTT+AGG | - | chr4_3:62133706-62133725 | Msa0653880:intron | 45.0% | |
| ! | AGAGTATCATAGCAACCGGT+AGG | - | chr4_3:62134159-62134178 | Msa0653880:intron | 45.0% |
| CTGCTCATCAAACTGTTTCC+AGG | + | chr4_3:62134491-62134510 | None:intergenic | 45.0% | |
| GTTTGATGAGCAGAAAGACC+AGG | - | chr4_3:62134498-62134517 | Msa0653880:intron | 45.0% | |
| GTGGGCGAGACATTCAATAT+AGG | - | chr4_3:62134687-62134706 | Msa0653880:intron | 45.0% | |
| GGAAAAATTGAAGCGGCAGT+TGG | - | chr4_3:62134803-62134822 | Msa0653880:intron | 45.0% | |
| AGGTTTCTTCCGTGCTTCAA+GGG | + | chr4_3:62134844-62134863 | None:intergenic | 45.0% | |
| AAGAAACCTGCAGAAGATGC+AGG | - | chr4_3:62134855-62134874 | Msa0653880:intron | 45.0% | |
| AGAAACCTGCAGAAGATGCA+GGG | - | chr4_3:62134856-62134875 | Msa0653880:intron | 45.0% | |
| AAGGGCTTGTCATTGACGAA+TGG | - | chr4_3:62134895-62134914 | Msa0653880:intron | 45.0% | |
| AGGGCTTGTCATTGACGAAT+GGG | - | chr4_3:62134896-62134915 | Msa0653880:intron | 45.0% | |
| AAGATACCTTGCTAAGCAGC+AGG | - | chr4_3:62135045-62135064 | Msa0653880:CDS | 45.0% | |
| AGATACCTTGCTAAGCAGCA+GGG | - | chr4_3:62135046-62135065 | Msa0653880:CDS | 45.0% | |
| GTGAAAACTATGTGTGGGTG+TGG | - | chr4_3:62135209-62135228 | Msa0653880:CDS | 45.0% | |
| AAACAGAGAGACACCCACCA+TGG | - | chr4_3:62131347-62131366 | Msa0653880:three_prime_UTR | 50.0% | |
| ! | GTGAGGTTTGGGTTCAGCTA+CGG | + | chr4_3:62131373-62131392 | None:intergenic | 50.0% |
| CTTAGGTTCGGAGTGAGGTT+TGG | + | chr4_3:62131385-62131404 | None:intergenic | 50.0% | |
| CAAACCTCACTCCGAACCTA+AGG | - | chr4_3:62131383-62131402 | Msa0653880:three_prime_UTR | 50.0% | |
| CAAACCTTAGGTTCGGAGTG+AGG | + | chr4_3:62131390-62131409 | None:intergenic | 50.0% | |
| CTCACTCCGAACCTAAGGTT+TGG | - | chr4_3:62131388-62131407 | Msa0653880:three_prime_UTR | 50.0% | |
| AACAGAAGACGACGTCGTGT+TGG | + | chr4_3:62131457-62131476 | None:intergenic | 50.0% | |
| GGTACGGAGATCCACTTAAG+GGG | + | chr4_3:62132512-62132531 | None:intergenic | 50.0% | |
| GAGGTACGGAGATCCACTTA+AGG | + | chr4_3:62132514-62132533 | None:intergenic | 50.0% | |
| !! | ATTAGTCTCGGGCTTTTGGC+CGG | - | chr4_3:62132539-62132558 | Msa0653880:intron | 50.0% |
| ! | TTTTGGCCGGAGGATACCAT+GGG | - | chr4_3:62132552-62132571 | Msa0653880:intron | 50.0% |
| TGGTTACCCATGGTATCCTC+CGG | + | chr4_3:62132561-62132580 | None:intergenic | 50.0% | |
| AGCTACCTGAGAAGAGCAGA+CGG | - | chr4_3:62132756-62132775 | Msa0653880:intron | 50.0% | |
| TACAAAATACCTCGGGGTGG+GGG | - | chr4_3:62132809-62132828 | Msa0653880:intron | 50.0% | |
| GGAGCCCTATTCCTCGAATA+TGG | + | chr4_3:62132896-62132915 | None:intergenic | 50.0% | |
| ! | GACTTGGTCGCATCATGATG+TGG | + | chr4_3:62132918-62132937 | None:intergenic | 50.0% |
| AAGTCATTCCGCTTCCTCCT+CGG | - | chr4_3:62133029-62133048 | Msa0653880:intron | 50.0% | |
| ACCCTTGCTAAGCACATCGT+TGG | - | chr4_3:62133124-62133143 | Msa0653880:intron | 50.0% | |
| GCCAACGATGTGCTTAGCAA+GGG | + | chr4_3:62133128-62133147 | None:intergenic | 50.0% | |
| TGCCAACGATGTGCTTAGCA+AGG | + | chr4_3:62133129-62133148 | None:intergenic | 50.0% | |
| TGCTAAGCACATCGTTGGCA+TGG | - | chr4_3:62133129-62133148 | Msa0653880:intron | 50.0% | |
| TCCGCGCAGCCATTAAAACT+TGG | + | chr4_3:62133437-62133456 | None:intergenic | 50.0% | |
| CTCATCTACACAAGACGGAG+AGG | + | chr4_3:62133691-62133710 | None:intergenic | 50.0% | |
| CCTGGCTCATCTACACAAGA+CGG | + | chr4_3:62133696-62133715 | None:intergenic | 50.0% | |
| ! | GCACTCCTAACCTGTTTTCC+TGG | + | chr4_3:62133714-62133733 | None:intergenic | 50.0% |
| !! | AACAGGTTAGGAGTGCCATC+AGG | - | chr4_3:62133718-62133737 | Msa0653880:intron | 50.0% |
| ! | AGTTGTTTCATGCGTCCTCC+TGG | - | chr4_3:62134116-62134135 | Msa0653880:intron | 50.0% |
| GTTGCTATGATACTCTCGCC+AGG | + | chr4_3:62134155-62134174 | None:intergenic | 50.0% | |
| !! | GGCGAGAGTATCATAGCAAC+CGG | - | chr4_3:62134155-62134174 | Msa0653880:intron | 50.0% |
| AATTGATTACGTCCCCGAGC+TGG | - | chr4_3:62134374-62134393 | Msa0653880:intron | 50.0% | |
| TGATGAGCAGAAAGACCAGG+TGG | - | chr4_3:62134501-62134520 | Msa0653880:intron | 50.0% | |
| AAATCTGCTCAACTGCCACC+TGG | + | chr4_3:62134519-62134538 | None:intergenic | 50.0% | |
| CAGGTTTCTTCCGTGCTTCA+AGG | + | chr4_3:62134845-62134864 | None:intergenic | 50.0% | |
| ! | TTTGGGTTCAGCTACGGCCA+TGG | + | chr4_3:62131367-62131386 | None:intergenic | 55.0% |
| AGAAGACGACGTCGTGTTGG+TGG | + | chr4_3:62131454-62131473 | None:intergenic | 55.0% | |
| GCTTGAGACGACGTCGTGTT+GGG | + | chr4_3:62131587-62131606 | None:intergenic | 55.0% | |
| AGCTTGAGACGACGTCGTGT+TGG | + | chr4_3:62131588-62131607 | None:intergenic | 55.0% | |
| CGAACTGAGCTAAGCTCACG+TGG | + | chr4_3:62132075-62132094 | None:intergenic | 55.0% | |
| TCTTTCGTACGCAGCAGCCA+TGG | + | chr4_3:62132468-62132487 | None:intergenic | 55.0% | |
| GGAGAGGTCATCCCCTTAAG+TGG | - | chr4_3:62132498-62132517 | Msa0653880:CDS | 55.0% | |
| AGTGGATCTCCGTACCTCGA+AGG | - | chr4_3:62132516-62132535 | Msa0653880:CDS | 55.0% | |
| AGCCCGAGACTAATCCTTCG+AGG | + | chr4_3:62132533-62132552 | None:intergenic | 55.0% | |
| ! | CTTTTGGCCGGAGGATACCA+TGG | - | chr4_3:62132551-62132570 | Msa0653880:intron | 55.0% |
| CGAATCCGTCTGCTCTTCTC+AGG | + | chr4_3:62132764-62132783 | None:intergenic | 55.0% | |
| ACAAAATACCTCGGGGTGGG+GGG | - | chr4_3:62132810-62132829 | Msa0653880:intron | 55.0% | |
| ! | CATGACTGCTGATTGAGGGG+AGG | - | chr4_3:62132955-62132974 | Msa0653880:intron | 55.0% |
| ! | ACTGCTGATTGAGGGGAGGT+TGG | - | chr4_3:62132959-62132978 | Msa0653880:intron | 55.0% |
| GAGCTGGCAACGCATGTTGA+GGG | - | chr4_3:62132997-62133016 | Msa0653880:intron | 55.0% | |
| TGGCAACGCATGTTGAGGGA+CGG | - | chr4_3:62133001-62133020 | Msa0653880:intron | 55.0% | |
| CCGTCTTGTGTAGATGAGCC+AGG | - | chr4_3:62133693-62133712 | Msa0653880:intron | 55.0% | |
| TGATACTCTCGCCAGGTGCA+AGG | + | chr4_3:62134148-62134167 | None:intergenic | 55.0% | |
| CTGATGCTGCCCTTGAAGCA+CGG | - | chr4_3:62134832-62134851 | Msa0653880:intron | 55.0% | |
| TTAGGCCCTGCATCTTCTGC+AGG | + | chr4_3:62134864-62134883 | None:intergenic | 55.0% | |
| GGTTCAGCTACGGCCATGGT+GGG | + | chr4_3:62131363-62131382 | None:intergenic | 60.0% | |
| TGCCCTTATGACCCCGTGCT+TGG | - | chr4_3:62132687-62132706 | Msa0653880:CDS | 60.0% | |
| GCCCTTATGACCCCGTGCTT+GGG | - | chr4_3:62132688-62132707 | Msa0653880:CDS | 60.0% | |
| CCCCAAGCACGGGGTCATAA+GGG | + | chr4_3:62132692-62132711 | None:intergenic | 60.0% | |
| CCCTTATGACCCCGTGCTTG+GGG | - | chr4_3:62132689-62132708 | Msa0653880:CDS | 60.0% | |
| ACCCCAAGCACGGGGTCATA+AGG | + | chr4_3:62132693-62132712 | None:intergenic | 60.0% | |
| TACACAGCACCCCAAGCACG+GGG | + | chr4_3:62132701-62132720 | None:intergenic | 60.0% | |
| GTACACAGCACCCCAAGCAC+GGG | + | chr4_3:62132702-62132721 | None:intergenic | 60.0% | |
| GGTACACAGCACCCCAAGCA+CGG | + | chr4_3:62132703-62132722 | None:intergenic | 60.0% | |
| ! | AGCAGACGGATTCGCCACGT+AGG | - | chr4_3:62132770-62132789 | Msa0653880:intron | 60.0% |
| CAAAATACCTCGGGGTGGGG+GGG | - | chr4_3:62132811-62132830 | Msa0653880:intron | 60.0% | |
| AAAATACCTCGGGGTGGGGG+GGG | - | chr4_3:62132812-62132831 | Msa0653880:intron | 60.0% | |
| AGGGGAGGTTGGCGAGAAGA+AGG | - | chr4_3:62132970-62132989 | Msa0653880:intron | 60.0% | |
| GGGGAGGTTGGCGAGAAGAA+GGG | - | chr4_3:62132971-62132990 | Msa0653880:intron | 60.0% | |
| GGGAGGTTGGCGAGAAGAAG+GGG | - | chr4_3:62132972-62132991 | Msa0653880:intron | 60.0% | |
| GGAGGTTGGCGAGAAGAAGG+GGG | - | chr4_3:62132973-62132992 | Msa0653880:intron | 60.0% | |
| GAGGTTGGCGAGAAGAAGGG+GGG | - | chr4_3:62132974-62132993 | Msa0653880:intron | 60.0% | |
| AGGTTGGCGAGAAGAAGGGG+GGG | - | chr4_3:62132975-62132994 | Msa0653880:intron | 60.0% | |
| GGAGCTGGCAACGCATGTTG+AGG | - | chr4_3:62132996-62133015 | Msa0653880:intron | 60.0% | |
| AGCTGTGACCGAGGAGGAAG+CGG | + | chr4_3:62133040-62133059 | None:intergenic | 60.0% | |
| GGTGCAAGGATAGCTCCAGG+AGG | + | chr4_3:62134134-62134153 | None:intergenic | 60.0% | |
| CCAGGTGCAAGGATAGCTCC+AGG | + | chr4_3:62134137-62134156 | None:intergenic | 60.0% | |
| CCTGGAGCTATCCTTGCACC+TGG | - | chr4_3:62134134-62134153 | Msa0653880:intron | 60.0% | |
| CTCACAGGACTTGGACGCTC+TGG | + | chr4_3:62134562-62134581 | None:intergenic | 60.0% | |
| ! | CATCGCCCTGCTGCTTAGCA+AGG | + | chr4_3:62135054-62135073 | None:intergenic | 60.0% |
| TGCTAAGCAGCAGGGCGATG+TGG | - | chr4_3:62135054-62135073 | Msa0653880:CDS | 60.0% | |
| GGGTTCAGCTACGGCCATGG+TGG | + | chr4_3:62131364-62131383 | None:intergenic | 65.0% | |
| ! | AGTCTCGGGCTTTTGGCCGG+AGG | - | chr4_3:62132542-62132561 | Msa0653880:intron | 65.0% |
| ACGGATTCGCCACGTAGGCG+AGG | - | chr4_3:62132775-62132794 | Msa0653880:intron | 65.0% | |
| ACATCCTGGCCTCGCCTACG+TGG | + | chr4_3:62132787-62132806 | None:intergenic | 65.0% | |
| AAATACCTCGGGGTGGGGGG+GGG | - | chr4_3:62132813-62132832 | Msa0653880:intron | 65.0% | |
| TTCGCCACGTAGGCGAGGCC+AGG | - | chr4_3:62132780-62132799 | Msa0653880:intron | 70.0% | |
| AATACCTCGGGGTGGGGGGG+GGG | - | chr4_3:62132814-62132833 | Msa0653880:intron | 70.0% | |
| GCGAGAAGAAGGGGGGGAGC+TGG | - | chr4_3:62132981-62133000 | Msa0653880:intron | 70.0% | |
| ATACCTCGGGGTGGGGGGGG+GGG | - | chr4_3:62132815-62132834 | Msa0653880:intron | 75.0% | |
| ! | TACCTCGGGGTGGGGGGGGG+GGG | - | chr4_3:62132816-62132835 | Msa0653880:intron | 80.0% |
| ! | ACCTCGGGGTGGGGGGGGGG+GGG | - | chr4_3:62132817-62132836 | Msa0653880:intron | 85.0% |
| ! | CCTCGGGGTGGGGGGGGGGG+GGG | - | chr4_3:62132818-62132837 | Msa0653880:intron | 90.0% |
| ! | CTCGGGGTGGGGGGGGGGGG+GGG | - | chr4_3:62132819-62132838 | Msa0653880:intron | 90.0% |
| ! | TCGGGGTGGGGGGGGGGGGG+GGG | - | chr4_3:62132820-62132839 | Msa0653880:intron | 90.0% |
| ! | CCCCCCCCCCCCCCACCCCG+AGG | + | chr4_3:62132821-62132840 | None:intergenic | 95.0% |
| ! | CGGGGTGGGGGGGGGGGGGG+GGG | - | chr4_3:62132821-62132840 | Msa0653880:intron | 95.0% |
| ! | GGGGTGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132822-62132841 | Msa0653880:intron | 95.0% |
| ! | GGGTGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132823-62132842 | Msa0653880:intron | 95.0% |
| ! | GGTGGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132824-62132843 | Msa0653880:intron | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132825-62132844 | Msa0653880:intron | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr4_3:62132826-62132845 | Msa0653880:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 62131240 | 62135402 | 62131240 | ID=Msa0653880;Name=Msa0653880 |
| chr4_3 | mRNA | 62131240 | 62135402 | 62131240 | ID=Msa0653880-mRNA-1;Parent=Msa0653880;Name=Msa0653880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=126|0.85|0.87|1|1|1|8|309|298 |
| chr4_3 | exon | 62131240 | 62131611 | 62131240 | ID=Msa0653880-mRNA-1:exon:17167;Parent=Msa0653880-mRNA-1 |
| chr4_3 | exon | 62131725 | 62131844 | 62131725 | ID=Msa0653880-mRNA-1:exon:17166;Parent=Msa0653880-mRNA-1 |
| chr4_3 | exon | 62132066 | 62132143 | 62132066 | ID=Msa0653880-mRNA-1:exon:17165;Parent=Msa0653880-mRNA-1 |
| chr4_3 | exon | 62132247 | 62132359 | 62132247 | ID=Msa0653880-mRNA-1:exon:17164;Parent=Msa0653880-mRNA-1 |
| chr4_3 | exon | 62132466 | 62132547 | 62132466 | ID=Msa0653880-mRNA-1:exon:17163;Parent=Msa0653880-mRNA-1 |
| chr4_3 | exon | 62132632 | 62132730 | 62132632 | ID=Msa0653880-mRNA-1:exon:17162;Parent=Msa0653880-mRNA-1 |
| chr4_3 | exon | 62132866 | 62132936 | 62132866 | ID=Msa0653880-mRNA-1:exon:17161;Parent=Msa0653880-mRNA-1 |
| chr4_3 | exon | 62135006 | 62135402 | 62135006 | ID=Msa0653880-mRNA-1:exon:17160;Parent=Msa0653880-mRNA-1 |
| chr4_3 | five_prime_UTR | 62135277 | 62135402 | 62135277 | ID=Msa0653880-mRNA-1:five_prime_utr;Parent=Msa0653880-mRNA-1 |
| chr4_3 | CDS | 62135006 | 62135276 | 62135006 | ID=Msa0653880-mRNA-1:cds;Parent=Msa0653880-mRNA-1 |
| chr4_3 | CDS | 62132866 | 62132936 | 62132866 | ID=Msa0653880-mRNA-1:cds;Parent=Msa0653880-mRNA-1 |
| chr4_3 | CDS | 62132632 | 62132730 | 62132632 | ID=Msa0653880-mRNA-1:cds;Parent=Msa0653880-mRNA-1 |
| chr4_3 | CDS | 62132466 | 62132547 | 62132466 | ID=Msa0653880-mRNA-1:cds;Parent=Msa0653880-mRNA-1 |
| chr4_3 | CDS | 62132247 | 62132359 | 62132247 | ID=Msa0653880-mRNA-1:cds;Parent=Msa0653880-mRNA-1 |
| chr4_3 | CDS | 62132066 | 62132143 | 62132066 | ID=Msa0653880-mRNA-1:cds;Parent=Msa0653880-mRNA-1 |
| chr4_3 | CDS | 62131725 | 62131844 | 62131725 | ID=Msa0653880-mRNA-1:cds;Parent=Msa0653880-mRNA-1 |
| chr4_3 | CDS | 62131549 | 62131611 | 62131549 | ID=Msa0653880-mRNA-1:cds;Parent=Msa0653880-mRNA-1 |
| chr4_3 | three_prime_UTR | 62131240 | 62131548 | 62131240 | ID=Msa0653880-mRNA-1:three_prime_utr;Parent=Msa0653880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
