Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390290 | XP_013468989.1 | 84.236 | 203 | 5 | 1 | 1 | 176 | 1 | 203 | 3.24e-118 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390290 | A0A072VN18 | 84.236 | 203 | 5 | 1 | 1 | 176 | 1 | 203 | 1.55e-118 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005380 | Msa1390290 | 0.819424 | 1.169674e-52 | -8.615850e-47 |
| Msa0030160 | Msa1390290 | 0.836123 | 1.125079e-56 | -8.615850e-47 |
| Msa0035020 | Msa1390290 | 0.818138 | 2.291923e-52 | -8.615850e-47 |
| Msa0077700 | Msa1390290 | 0.813890 | 2.035595e-51 | -8.615850e-47 |
| Msa0092410 | Msa1390290 | 0.805340 | 1.399448e-49 | -8.615850e-47 |
| Msa1345940 | Msa1390290 | 0.809294 | 2.031193e-50 | -8.615850e-47 |
| Msa1353890 | Msa1390290 | 0.857443 | 1.627143e-62 | -8.615850e-47 |
| Msa1356600 | Msa1390290 | -0.817628 | 2.988177e-52 | -8.615850e-47 |
| Msa1375610 | Msa1390290 | -0.803293 | 3.734853e-49 | -8.615850e-47 |
| Msa1390290 | Msa1398900 | 0.800801 | 1.215571e-48 | -8.615850e-47 |
| Msa1390290 | Msa1416730 | 0.808824 | 2.561614e-50 | -8.615850e-47 |
| Msa1390290 | Msa1430550 | 0.810831 | 9.477122e-51 | -8.615850e-47 |
| Msa1390290 | Msa1450440 | 0.815797 | 7.691122e-52 | -8.615850e-47 |
| Msa0613150 | Msa1390290 | 0.802916 | 4.470916e-49 | -8.615850e-47 |
| Msa0613340 | Msa1390290 | 0.809897 | 1.507439e-50 | -8.615850e-47 |
| Msa0653880 | Msa1390290 | 0.801280 | 9.701824e-49 | -8.615850e-47 |
| Msa0662580 | Msa1390290 | 0.808670 | 2.762766e-50 | -8.615850e-47 |
| Msa0696100 | Msa1390290 | 0.808705 | 2.715551e-50 | -8.615850e-47 |
| Msa0697590 | Msa1390290 | 0.835653 | 1.480730e-56 | -8.615850e-47 |
| Msa0708310 | Msa1390290 | 0.853391 | 2.464167e-61 | -8.615850e-47 |
| Msa0742210 | Msa1390290 | 0.840754 | 7.188699e-58 | -8.615850e-47 |
| Msa0823370 | Msa1390290 | 0.837143 | 6.184605e-57 | -8.615850e-47 |
| Msa0833530 | Msa1390290 | 0.803940 | 2.742783e-49 | -8.615850e-47 |
| Msa0125650 | Msa1390290 | 0.806151 | 9.455618e-50 | -8.615850e-47 |
| Msa0137800 | Msa1390290 | 0.821524 | 3.857173e-53 | -8.615850e-47 |
| Msa0217700 | Msa1390290 | 0.820150 | 7.984770e-53 | -8.615850e-47 |
| Msa0234090 | Msa1390290 | 0.809857 | 1.538129e-50 | -8.615850e-47 |
| Msa1225860 | Msa1390290 | -0.810029 | 1.412096e-50 | -8.615850e-47 |
| Msa1325410 | Msa1390290 | -0.804879 | 1.747769e-49 | -8.615850e-47 |
| Msa1331050 | Msa1390290 | -0.803432 | 3.496702e-49 | -8.615850e-47 |
| Msa1341840 | Msa1390290 | 0.800785 | 1.224275e-48 | -8.615850e-47 |
| Msa0999680 | Msa1390290 | 0.810695 | 1.014445e-50 | -8.615850e-47 |
| Msa1012800 | Msa1390290 | 0.833151 | 6.289232e-56 | -8.615850e-47 |
| Msa1030810 | Msa1390290 | 0.810684 | 1.019774e-50 | -8.615850e-47 |
| Msa1043120 | Msa1390290 | 0.814649 | 1.383924e-51 | -8.615850e-47 |
| Msa1069890 | Msa1390290 | 0.803661 | 3.134314e-49 | -8.615850e-47 |
| Msa1089450 | Msa1390290 | 0.805052 | 1.607622e-49 | -8.615850e-47 |
| Msa1094410 | Msa1390290 | 0.810715 | 1.004347e-50 | -8.615850e-47 |
| Msa0240900 | Msa1390290 | 0.809459 | 1.872765e-50 | -8.615850e-47 |
| Msa0267790 | Msa1390290 | 0.945206 | 4.704958e-104 | -8.615850e-47 |
| Msa0269560 | Msa1390290 | 0.803006 | 4.283442e-49 | -8.615850e-47 |
| Msa0271540 | Msa1390290 | 0.824196 | 9.200858e-54 | -8.615850e-47 |
| Msa0317970 | Msa1390290 | 0.816757 | 4.690223e-52 | -8.615850e-47 |
| Msa0319260 | Msa1390290 | 0.808757 | 2.647734e-50 | -8.615850e-47 |
| Msa0348550 | Msa1390290 | 0.805234 | 1.473171e-49 | -8.615850e-47 |
| Msa1114670 | Msa1390290 | 0.806887 | 6.611455e-50 | -8.615850e-47 |
| Msa1155170 | Msa1390290 | -0.804675 | 1.927954e-49 | -8.615850e-47 |
| Msa1159170 | Msa1390290 | 0.826966 | 2.029273e-54 | -8.615850e-47 |
| Msa1211230 | Msa1390290 | -0.801610 | 8.300123e-49 | -8.615850e-47 |
| Msa0484800 | Msa1390290 | 0.800965 | 1.124901e-48 | -8.615850e-47 |
| Msa0526680 | Msa1390290 | 0.932814 | 4.831872e-95 | -8.615850e-47 |
| Msa0526730 | Msa1390290 | 0.939528 | 1.092360e-99 | -8.615850e-47 |
| Msa0558390 | Msa1390290 | 0.811882 | 5.604106e-51 | -8.615850e-47 |
| Msa0574600 | Msa1390290 | 0.840631 | 7.742806e-58 | -8.615850e-47 |
| Msa0577490 | Msa1390290 | 0.801776 | 7.674004e-49 | -8.615850e-47 |
| Msa0583360 | Msa1390290 | -0.809311 | 2.015100e-50 | -8.615850e-47 |
| Msa0965290 | Msa1390290 | 0.807866 | 4.100340e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390290 | MtrunA17_Chr1g0190821 | 84.236 | 203 | 5 | 1 | 1 | 176 | 1 | 203 | 2.98e-122 | 343 |
| Msa1390290 | MtrunA17_Chr7g0273981 | 42.211 | 199 | 75 | 5 | 1 | 159 | 1 | 199 | 1.55e-42 | 140 |
| Msa1390290 | MtrunA17_Chr1g0166401 | 35.784 | 204 | 89 | 4 | 12 | 174 | 10 | 212 | 2.38e-36 | 125 |
| Msa1390290 | MtrunA17_Chr7g0273961 | 41.573 | 89 | 47 | 3 | 1 | 86 | 1 | 87 | 9.89e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390290 | AT4G14746.1 | 27.919 | 197 | 95 | 4 | 10 | 165 | 10 | 200 | 3.67e-21 | 86.7 |
Find 63 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAGATTATAATAAT+TGG | 0.152675 | tig0021333:-55251 | None:intergenic |
| GTGCTGAACTTCATGATTAT+TGG | 0.205428 | tig0021333:+55837 | Msa1390290:three_prime_UTR |
| TTTGTTTGTGAATGCGATTC+TGG | 0.220907 | tig0021333:+54450 | Msa1390290:CDS |
| GTGTGTATGTGTCTTGTTCT+TGG | 0.257626 | tig0021333:-55212 | None:intergenic |
| TTGAGAAGATTATAATAATT+GGG | 0.290960 | tig0021333:-55250 | None:intergenic |
| TCCCCAGCAAGCTCAATCTT+TGG | 0.317543 | tig0021333:+55725 | Msa1390290:intron |
| TGAAACTTTAATTCCAAGTC+TGG | 0.344971 | tig0021333:-55440 | None:intergenic |
| AAAGCCATGATTCGGTCATT+TGG | 0.351572 | tig0021333:+55942 | Msa1390290:three_prime_UTR |
| TGTCACAAATAGTATAGAAT+TGG | 0.368876 | tig0021333:-54063 | None:intergenic |
| ATGGGTTCTTTCAAGTTGTT+GGG | 0.370656 | tig0021333:+54093 | Msa1390290:CDS |
| AATGGGTTCTTTCAAGTTGT+TGG | 0.394087 | tig0021333:+54092 | Msa1390290:exon |
| GTGCTGAGTTAATAATATAT+AGG | 0.403462 | tig0021333:-56041 | None:intergenic |
| TAGTATAGAATTGGAAAGTA+AGG | 0.405695 | tig0021333:-54054 | None:intergenic |
| ATATATCATCATCTTCATCT+TGG | 0.410673 | tig0021333:-54485 | None:intergenic |
| ATTAAAGTTTCAAATTCAAC+CGG | 0.417259 | tig0021333:+55451 | Msa1390290:CDS |
| TATATCATCATCTTCATCTT+GGG | 0.418577 | tig0021333:-54484 | None:intergenic |
| GGATCTGATTGTTCCAGACT+TGG | 0.423037 | tig0021333:+55427 | Msa1390290:CDS |
| AAAATCCCCTTTGGCAGCCA+TGG | 0.429161 | tig0021333:-54148 | None:intergenic |
| ACAACTTGAAAGAACCCATT+TGG | 0.437082 | tig0021333:-54089 | None:intergenic |
| CTATTTGTGACATTACCAAA+TGG | 0.447019 | tig0021333:+54074 | Msa1390290:exon |
| TATTTGTGACATTACCAAAT+GGG | 0.457004 | tig0021333:+54075 | Msa1390290:exon |
| ACTGTGTTGTTGATTTCAAC+GGG | 0.460186 | tig0021333:+55767 | Msa1390290:CDS |
| TACTTCCCATGGCTGCCAAA+GGG | 0.472045 | tig0021333:+54142 | Msa1390290:CDS |
| CATGATTATTGGAAGTCTGA+TGG | 0.481518 | tig0021333:+55848 | Msa1390290:three_prime_UTR |
| CACTGTGTTGTTGATTTCAA+CGG | 0.481718 | tig0021333:+55766 | Msa1390290:CDS |
| TCTTTGGAGGAAGGTTCCAT+TGG | 0.490994 | tig0021333:+55741 | Msa1390290:CDS |
| TTTCAACGGGTATGGTTATG+TGG | 0.491371 | tig0021333:+55780 | Msa1390290:CDS |
| GTTGTTGATTTCAACGGGTA+TGG | 0.491561 | tig0021333:+55772 | Msa1390290:CDS |
| CCAGCAAGCTCAATCTTTGG+AGG | 0.494478 | tig0021333:+55728 | Msa1390290:intron |
| ATCATCAACAAAATCCCCTT+TGG | 0.497557 | tig0021333:-54157 | None:intergenic |
| ATGGTTATGTGGAGCTAGCT+AGG | 0.499858 | tig0021333:+55791 | Msa1390290:exon |
| GTTGTTGGGTCTTATAGCCA+TGG | 0.505786 | tig0021333:+54107 | Msa1390290:CDS |
| AGGAAAGATATATGTTTACA+TGG | 0.507017 | tig0021333:-56021 | None:intergenic |
| AGCTAGCTAGGATGCATAGA+TGG | 0.514556 | tig0021333:+55803 | Msa1390290:exon |
| TGAGAAGATTATAATAATTG+GGG | 0.515021 | tig0021333:-55249 | None:intergenic |
| ATTCACAAACAAAGTTCAAA+GGG | 0.522384 | tig0021333:-54440 | None:intergenic |
| TTTGTGAATGCGATTCTGGC+TGG | 0.522677 | tig0021333:+54454 | Msa1390290:CDS |
| ATCTCCAAATGACCGAATCA+TGG | 0.531113 | tig0021333:-55946 | None:intergenic |
| ACCATGACTCTCAACATCTC+CGG | 0.532665 | tig0021333:-55470 | None:intergenic |
| CATTCACAAACAAAGTTCAA+AGG | 0.535528 | tig0021333:-54441 | None:intergenic |
| ATGATTATTGGAAGTCTGAT+GGG | 0.536155 | tig0021333:+55849 | Msa1390290:three_prime_UTR |
| ATGATGACTATTGTATCATA+TGG | 0.544177 | tig0021333:+55967 | Msa1390290:three_prime_UTR |
| CTACTTCCCATGGCTGCCAA+AGG | 0.546322 | tig0021333:+54141 | Msa1390290:CDS |
| TCTCATGTTACTACTTCCCA+TGG | 0.547836 | tig0021333:+54131 | Msa1390290:CDS |
| TATTGGGCATATTGTGGAGA+AGG | 0.548373 | tig0021333:+55181 | Msa1390290:CDS |
| TCATTAATAAAGCCATGATT+CGG | 0.551833 | tig0021333:+55934 | Msa1390290:three_prime_UTR |
| CAAGCTCAATCTTTGGAGGA+AGG | 0.555181 | tig0021333:+55732 | Msa1390290:CDS |
| AGAAAAGGTTTGTGAAGAAG+TGG | 0.556344 | tig0021333:+54380 | Msa1390290:intron |
| AAATCCCCTTTGGCAGCCAT+GGG | 0.560106 | tig0021333:-54147 | None:intergenic |
| TCAACAACACAGTGATCCAA+TGG | 0.563270 | tig0021333:-55757 | None:intergenic |
| TATTTAATGTGATAAGTACA+AGG | 0.565323 | tig0021333:-56072 | None:intergenic |
| GCTTGCTATTGGGCATATTG+TGG | 0.565530 | tig0021333:+55175 | Msa1390290:intron |
| ACCGGAGATGTTGAGAGTCA+TGG | 0.572906 | tig0021333:+55469 | Msa1390290:CDS |
| GAAGAAGTGGAGTGTGGGAA+AGG | 0.596466 | tig0021333:+54393 | Msa1390290:CDS |
| GCTTACATTCACTGTAACAA+GGG | 0.603257 | tig0021333:-55285 | None:intergenic |
| GGAAAGATATATGTTTACAT+GGG | 0.608873 | tig0021333:-56020 | None:intergenic |
| TGCTTACATTCACTGTAACA+AGG | 0.610685 | tig0021333:-55286 | None:intergenic |
| ACTTCCCATGGCTGCCAAAG+GGG | 0.616013 | tig0021333:+54143 | Msa1390290:CDS |
| GTTTGTGAAGAAGTGGAGTG+TGG | 0.633621 | tig0021333:+54387 | Msa1390290:CDS |
| TTTGTGAAGAAGTGGAGTGT+GGG | 0.637331 | tig0021333:+54388 | Msa1390290:CDS |
| TTACATTGAGGAATGACACA+TGG | 0.645633 | tig0021333:-54525 | None:intergenic |
| AAGTAGTAACATGAGAACCA+TGG | 0.695164 | tig0021333:-54124 | None:intergenic |
| GTGTGGGAAAGGAAACTGTG+TGG | 0.765418 | tig0021333:+54404 | Msa1390290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTTAATTTTTTTTATGA+AGG | + | tig0021333:54621-54640 | Msa1390290:intron | 10.0% |
| !!! | TAACTTAATTTTTTTTATGA+AGG | + | tig0021333:54621-54640 | Msa1390290:intron | 10.0% |
| !! | TATATATGCATTAGATATAT+AGG | - | tig0021333:54227-54246 | None:intergenic | 15.0% |
| !!! | AAAGGTTCATAATTTTTTTT+TGG | + | tig0021333:55006-55025 | Msa1390290:intron | 15.0% |
| !! | TTGAGAAGATTATAATAATT+GGG | - | tig0021333:55253-55272 | None:intergenic | 15.0% |
| !! | ATTGAGAAGATTATAATAAT+TGG | - | tig0021333:55254-55273 | None:intergenic | 15.0% |
| !! | CAAAATAACTGAATAAATAA+AGG | - | tig0021333:55320-55339 | None:intergenic | 15.0% |
| !! | TATATATGCATTAGATATAT+AGG | - | tig0021333:54227-54246 | None:intergenic | 15.0% |
| !!! | AAAGGTTCATAATTTTTTTT+TGG | + | tig0021333:55006-55025 | Msa1390290:intron | 15.0% |
| !! | TTGAGAAGATTATAATAATT+GGG | - | tig0021333:55253-55272 | None:intergenic | 15.0% |
| !! | ATTGAGAAGATTATAATAAT+TGG | - | tig0021333:55254-55273 | None:intergenic | 15.0% |
| !! | CAAAATAACTGAATAAATAA+AGG | - | tig0021333:55320-55339 | None:intergenic | 15.0% |
| !! | ATATCTAATGCATATATACA+TGG | + | tig0021333:54229-54248 | Msa1390290:intron | 20.0% |
| !! | ATATCCATATATATATGTCA+CGG | - | tig0021333:54351-54370 | None:intergenic | 20.0% |
| !! | TATTCTATCATTTATCTTGT+AGG | + | tig0021333:54675-54694 | Msa1390290:intron | 20.0% |
| !! | AACCATATTATCAATTCAAA+AGG | + | tig0021333:54988-55007 | Msa1390290:intron | 20.0% |
| !!! | AACCTTTTGAATTGATAATA+TGG | - | tig0021333:54993-55012 | None:intergenic | 20.0% |
| !! | TTCATATTATATGCACAAAA+AGG | + | tig0021333:55037-55056 | Msa1390290:intron | 20.0% |
| !! | TGAGAAGATTATAATAATTG+GGG | - | tig0021333:55252-55271 | None:intergenic | 20.0% |
| !! | ACTGAATAAATAAAGGTTTA+AGG | - | tig0021333:55313-55332 | None:intergenic | 20.0% |
| !!! | TTATTCAGTTATTTTGACAA+TGG | + | tig0021333:55324-55343 | Msa1390290:intron | 20.0% |
| !! | ATTAAAGTTTCAAATTCAAC+CGG | + | tig0021333:55451-55470 | Msa1390290:CDS | 20.0% |
| !!! | GGTTCAAGATTTTTAAATTT+AGG | + | tig0021333:55595-55614 | Msa1390290:intron | 20.0% |
| !!! | AAATTTTGCTAGTTTTCTTA+TGG | + | tig0021333:55627-55646 | Msa1390290:intron | 20.0% |
| !! | TATTTAATGTGATAAGTACA+AGG | - | tig0021333:56075-56094 | None:intergenic | 20.0% |
| !! | GTACTATAACAATAAGAATT+AGG | - | tig0021333:54024-54043 | None:intergenic | 20.0% |
| !! | ATATCTAATGCATATATACA+TGG | + | tig0021333:54229-54248 | Msa1390290:intron | 20.0% |
| !! | ATATCCATATATATATGTCA+CGG | - | tig0021333:54351-54370 | None:intergenic | 20.0% |
| !! | TATTCTATCATTTATCTTGT+AGG | + | tig0021333:54675-54694 | Msa1390290:intron | 20.0% |
| !! | AACCATATTATCAATTCAAA+AGG | + | tig0021333:54988-55007 | Msa1390290:intron | 20.0% |
| !!! | AACCTTTTGAATTGATAATA+TGG | - | tig0021333:54993-55012 | None:intergenic | 20.0% |
| !! | TTCATATTATATGCACAAAA+AGG | + | tig0021333:55037-55056 | Msa1390290:intron | 20.0% |
| !! | TGAGAAGATTATAATAATTG+GGG | - | tig0021333:55252-55271 | None:intergenic | 20.0% |
| !! | ACTGAATAAATAAAGGTTTA+AGG | - | tig0021333:55313-55332 | None:intergenic | 20.0% |
| !!! | TTATTCAGTTATTTTGACAA+TGG | + | tig0021333:55324-55343 | Msa1390290:intron | 20.0% |
| !! | ATTAAAGTTTCAAATTCAAC+CGG | + | tig0021333:55451-55470 | Msa1390290:CDS | 20.0% |
| !!! | GGTTCAAGATTTTTAAATTT+AGG | + | tig0021333:55595-55614 | Msa1390290:intron | 20.0% |
| !!! | AAATTTTGCTAGTTTTCTTA+TGG | + | tig0021333:55627-55646 | Msa1390290:intron | 20.0% |
| !! | TATTTAATGTGATAAGTACA+AGG | - | tig0021333:56075-56094 | None:intergenic | 20.0% |
| ! | TAGTATAGAATTGGAAAGTA+AGG | - | tig0021333:54057-54076 | None:intergenic | 25.0% |
| ! | TGTCACAAATAGTATAGAAT+TGG | - | tig0021333:54066-54085 | None:intergenic | 25.0% |
| ! | TATTTGTGACATTACCAAAT+GGG | + | tig0021333:54075-54094 | Msa1390290:exon | 25.0% |
| ! | TTAACCGTGACATATATATA+TGG | + | tig0021333:54344-54363 | Msa1390290:intron | 25.0% |
| ! | GGATATATTAATTGCAGAAA+AGG | + | tig0021333:54365-54384 | Msa1390290:intron | 25.0% |
| ! | ATTCACAAACAAAGTTCAAA+GGG | - | tig0021333:54443-54462 | None:intergenic | 25.0% |
| ! | TATATCATCATCTTCATCTT+GGG | - | tig0021333:54487-54506 | None:intergenic | 25.0% |
| ! | ATATATCATCATCTTCATCT+TGG | - | tig0021333:54488-54507 | None:intergenic | 25.0% |
| ! | AGAGATTGAAATTTACATTG+AGG | - | tig0021333:54540-54559 | None:intergenic | 25.0% |
| ! | CAAGTAAATAAGAGTTAGTA+AGG | - | tig0021333:54569-54588 | None:intergenic | 25.0% |
| ! | CAAGATAAATGATAGAATAG+AGG | - | tig0021333:54674-54693 | None:intergenic | 25.0% |
| ! | AATTGAAGTTCATTAACACT+AGG | + | tig0021333:54897-54916 | Msa1390290:intron | 25.0% |
| ! | ATTGAAGTTCATTAACACTA+GGG | + | tig0021333:54898-54917 | Msa1390290:intron | 25.0% |
| !!! | AATATGGTTCAGTTTTTTTG+TGG | - | tig0021333:54977-54996 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTAGCTTGCTAT+TGG | + | tig0021333:55164-55183 | Msa1390290:intron | 25.0% |
| !!! | TATTTTTGTAGCTTGCTATT+GGG | + | tig0021333:55165-55184 | Msa1390290:intron | 25.0% |
| !!! | TTAAATTTTGAAGGTACTCT+TGG | + | tig0021333:55406-55425 | Msa1390290:intron | 25.0% |
| ! | TCATTAATAAAGCCATGATT+CGG | + | tig0021333:55934-55953 | Msa1390290:three_prime_UTR | 25.0% |
| ! | ATGATGACTATTGTATCATA+TGG | + | tig0021333:55967-55986 | Msa1390290:three_prime_UTR | 25.0% |
| ! | GGAAAGATATATGTTTACAT+GGG | - | tig0021333:56023-56042 | None:intergenic | 25.0% |
| ! | AGGAAAGATATATGTTTACA+TGG | - | tig0021333:56024-56043 | None:intergenic | 25.0% |
| ! | GTGCTGAGTTAATAATATAT+AGG | - | tig0021333:56044-56063 | None:intergenic | 25.0% |
| ! | TAGTATAGAATTGGAAAGTA+AGG | - | tig0021333:54057-54076 | None:intergenic | 25.0% |
| ! | TGTCACAAATAGTATAGAAT+TGG | - | tig0021333:54066-54085 | None:intergenic | 25.0% |
| ! | TATTTGTGACATTACCAAAT+GGG | + | tig0021333:54075-54094 | Msa1390290:exon | 25.0% |
| ! | TTAACCGTGACATATATATA+TGG | + | tig0021333:54344-54363 | Msa1390290:intron | 25.0% |
| ! | GGATATATTAATTGCAGAAA+AGG | + | tig0021333:54365-54384 | Msa1390290:intron | 25.0% |
| ! | ATTCACAAACAAAGTTCAAA+GGG | - | tig0021333:54443-54462 | None:intergenic | 25.0% |
| ! | TATATCATCATCTTCATCTT+GGG | - | tig0021333:54487-54506 | None:intergenic | 25.0% |
| ! | ATATATCATCATCTTCATCT+TGG | - | tig0021333:54488-54507 | None:intergenic | 25.0% |
| ! | AGAGATTGAAATTTACATTG+AGG | - | tig0021333:54540-54559 | None:intergenic | 25.0% |
| ! | CAAGTAAATAAGAGTTAGTA+AGG | - | tig0021333:54569-54588 | None:intergenic | 25.0% |
| ! | CAAGATAAATGATAGAATAG+AGG | - | tig0021333:54674-54693 | None:intergenic | 25.0% |
| ! | AATTGAAGTTCATTAACACT+AGG | + | tig0021333:54897-54916 | Msa1390290:intron | 25.0% |
| ! | ATTGAAGTTCATTAACACTA+GGG | + | tig0021333:54898-54917 | Msa1390290:intron | 25.0% |
| !!! | AATATGGTTCAGTTTTTTTG+TGG | - | tig0021333:54977-54996 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTAGCTTGCTAT+TGG | + | tig0021333:55164-55183 | Msa1390290:intron | 25.0% |
| !!! | TATTTTTGTAGCTTGCTATT+GGG | + | tig0021333:55165-55184 | Msa1390290:intron | 25.0% |
| !!! | TTAAATTTTGAAGGTACTCT+TGG | + | tig0021333:55406-55425 | Msa1390290:intron | 25.0% |
| ! | TCATTAATAAAGCCATGATT+CGG | + | tig0021333:55934-55953 | Msa1390290:three_prime_UTR | 25.0% |
| ! | ATGATGACTATTGTATCATA+TGG | + | tig0021333:55967-55986 | Msa1390290:three_prime_UTR | 25.0% |
| ! | GGAAAGATATATGTTTACAT+GGG | - | tig0021333:56023-56042 | None:intergenic | 25.0% |
| ! | AGGAAAGATATATGTTTACA+TGG | - | tig0021333:56024-56043 | None:intergenic | 25.0% |
| ! | GTGCTGAGTTAATAATATAT+AGG | - | tig0021333:56044-56063 | None:intergenic | 25.0% |
| CTATTTGTGACATTACCAAA+TGG | + | tig0021333:54074-54093 | Msa1390290:exon | 30.0% | |
| AAAAATGAGTTTACGTACCA+AGG | - | tig0021333:54185-54204 | None:intergenic | 30.0% | |
| CATTCACAAACAAAGTTCAA+AGG | - | tig0021333:54444-54463 | None:intergenic | 30.0% | |
| GTAAATAAGAGTTAGTAAGG+AGG | - | tig0021333:54566-54585 | None:intergenic | 30.0% | |
| TGATAGAATAGAGGAGATTT+AGG | - | tig0021333:54665-54684 | None:intergenic | 30.0% | |
| !! | ACTTAACTCTTTGTTGACTT+TGG | + | tig0021333:54792-54811 | Msa1390290:intron | 30.0% |
| AGTAAAGTCTTGCTAAAATC+AGG | + | tig0021333:54840-54859 | Msa1390290:intron | 30.0% | |
| TTGAAGTTCATTAACACTAG+GGG | + | tig0021333:54899-54918 | Msa1390290:intron | 30.0% | |
| ACAAAAAGGTTTCATGAGTT+TGG | + | tig0021333:55051-55070 | Msa1390290:intron | 30.0% | |
| AGAAGAATATTGACCAAACA+TGG | + | tig0021333:55364-55383 | Msa1390290:intron | 30.0% | |
| CCAAGATATTAATCCATGTT+TGG | - | tig0021333:55380-55399 | None:intergenic | 30.0% | |
| ! | CCAAACATGGATTAATATCT+TGG | + | tig0021333:55377-55396 | Msa1390290:intron | 30.0% |
| ! | AACATGGATTAATATCTTGG+TGG | + | tig0021333:55380-55399 | Msa1390290:intron | 30.0% |
| !!! | TGGTGGACTTTAAATTTTGA+AGG | + | tig0021333:55397-55416 | Msa1390290:intron | 30.0% |
| TGAAACTTTAATTCCAAGTC+TGG | - | tig0021333:55443-55462 | None:intergenic | 30.0% | |
| TGGTAACAATTTCTGTGTTA+GGG | - | tig0021333:55563-55582 | None:intergenic | 30.0% | |
| ! | TTGGTAACAATTTCTGTGTT+AGG | - | tig0021333:55564-55583 | None:intergenic | 30.0% |
| AACACAGAAATTGTTACCAA+CGG | + | tig0021333:55564-55583 | Msa1390290:intron | 30.0% | |
| ! | TTCTGATGATGTGTCTAATT+TGG | + | tig0021333:55699-55718 | Msa1390290:intron | 30.0% |
| ATGATTATTGGAAGTCTGAT+GGG | + | tig0021333:55849-55868 | Msa1390290:three_prime_UTR | 30.0% | |
| CTATTTGTGACATTACCAAA+TGG | + | tig0021333:54074-54093 | Msa1390290:exon | 30.0% | |
| AAAAATGAGTTTACGTACCA+AGG | - | tig0021333:54185-54204 | None:intergenic | 30.0% | |
| CATTCACAAACAAAGTTCAA+AGG | - | tig0021333:54444-54463 | None:intergenic | 30.0% | |
| GTAAATAAGAGTTAGTAAGG+AGG | - | tig0021333:54566-54585 | None:intergenic | 30.0% | |
| TGATAGAATAGAGGAGATTT+AGG | - | tig0021333:54665-54684 | None:intergenic | 30.0% | |
| !! | ACTTAACTCTTTGTTGACTT+TGG | + | tig0021333:54792-54811 | Msa1390290:intron | 30.0% |
| AGTAAAGTCTTGCTAAAATC+AGG | + | tig0021333:54840-54859 | Msa1390290:intron | 30.0% | |
| TTGAAGTTCATTAACACTAG+GGG | + | tig0021333:54899-54918 | Msa1390290:intron | 30.0% | |
| ACAAAAAGGTTTCATGAGTT+TGG | + | tig0021333:55051-55070 | Msa1390290:intron | 30.0% | |
| AGAAGAATATTGACCAAACA+TGG | + | tig0021333:55364-55383 | Msa1390290:intron | 30.0% | |
| CCAAGATATTAATCCATGTT+TGG | - | tig0021333:55380-55399 | None:intergenic | 30.0% | |
| ! | CCAAACATGGATTAATATCT+TGG | + | tig0021333:55377-55396 | Msa1390290:intron | 30.0% |
| ! | AACATGGATTAATATCTTGG+TGG | + | tig0021333:55380-55399 | Msa1390290:intron | 30.0% |
| !!! | TGGTGGACTTTAAATTTTGA+AGG | + | tig0021333:55397-55416 | Msa1390290:intron | 30.0% |
| TGAAACTTTAATTCCAAGTC+TGG | - | tig0021333:55443-55462 | None:intergenic | 30.0% | |
| TGGTAACAATTTCTGTGTTA+GGG | - | tig0021333:55563-55582 | None:intergenic | 30.0% | |
| ! | TTGGTAACAATTTCTGTGTT+AGG | - | tig0021333:55564-55583 | None:intergenic | 30.0% |
| AACACAGAAATTGTTACCAA+CGG | + | tig0021333:55564-55583 | Msa1390290:intron | 30.0% | |
| ! | TTCTGATGATGTGTCTAATT+TGG | + | tig0021333:55699-55718 | Msa1390290:intron | 30.0% |
| ATGATTATTGGAAGTCTGAT+GGG | + | tig0021333:55849-55868 | Msa1390290:three_prime_UTR | 30.0% | |
| ACAACTTGAAAGAACCCATT+TGG | - | tig0021333:54092-54111 | None:intergenic | 35.0% | |
| !! | AATGGGTTCTTTCAAGTTGT+TGG | + | tig0021333:54092-54111 | Msa1390290:exon | 35.0% |
| !! | ATGGGTTCTTTCAAGTTGTT+GGG | + | tig0021333:54093-54112 | Msa1390290:CDS | 35.0% |
| AAGTAGTAACATGAGAACCA+TGG | - | tig0021333:54127-54146 | None:intergenic | 35.0% | |
| ATCATCAACAAAATCCCCTT+TGG | - | tig0021333:54160-54179 | None:intergenic | 35.0% | |
| !!! | GATTTTGTTGATGATGTCCT+TGG | + | tig0021333:54165-54184 | Msa1390290:CDS | 35.0% |
| AGAAAAGGTTTGTGAAGAAG+TGG | + | tig0021333:54380-54399 | Msa1390290:intron | 35.0% | |
| TTTGTTTGTGAATGCGATTC+TGG | + | tig0021333:54450-54469 | Msa1390290:CDS | 35.0% | |
| TTACATTGAGGAATGACACA+TGG | - | tig0021333:54528-54547 | None:intergenic | 35.0% | |
| CTTGTAGGTAGCTTGAATTA+TGG | + | tig0021333:54690-54709 | Msa1390290:intron | 35.0% | |
| GTTACACTTACGATCAAAAG+CGG | - | tig0021333:54769-54788 | None:intergenic | 35.0% | |
| ATCCATAAACTGAACCAAAC+TGG | + | tig0021333:54950-54969 | Msa1390290:intron | 35.0% | |
| !!! | AGTTTTTTTGTGGTCCAGTT+TGG | - | tig0021333:54967-54986 | None:intergenic | 35.0% |
| GCTTACATTCACTGTAACAA+GGG | - | tig0021333:55288-55307 | None:intergenic | 35.0% | |
| TGCTTACATTCACTGTAACA+AGG | - | tig0021333:55289-55308 | None:intergenic | 35.0% | |
| !! | CACTGTGTTGTTGATTTCAA+CGG | + | tig0021333:55766-55785 | Msa1390290:CDS | 35.0% |
| !! | ACTGTGTTGTTGATTTCAAC+GGG | + | tig0021333:55767-55786 | Msa1390290:CDS | 35.0% |
| GTGCTGAACTTCATGATTAT+TGG | + | tig0021333:55837-55856 | Msa1390290:three_prime_UTR | 35.0% | |
| CATGATTATTGGAAGTCTGA+TGG | + | tig0021333:55848-55867 | Msa1390290:three_prime_UTR | 35.0% | |
| ACAACTTGAAAGAACCCATT+TGG | - | tig0021333:54092-54111 | None:intergenic | 35.0% | |
| !! | AATGGGTTCTTTCAAGTTGT+TGG | + | tig0021333:54092-54111 | Msa1390290:exon | 35.0% |
| !! | ATGGGTTCTTTCAAGTTGTT+GGG | + | tig0021333:54093-54112 | Msa1390290:CDS | 35.0% |
| AAGTAGTAACATGAGAACCA+TGG | - | tig0021333:54127-54146 | None:intergenic | 35.0% | |
| ATCATCAACAAAATCCCCTT+TGG | - | tig0021333:54160-54179 | None:intergenic | 35.0% | |
| !!! | GATTTTGTTGATGATGTCCT+TGG | + | tig0021333:54165-54184 | Msa1390290:CDS | 35.0% |
| AGAAAAGGTTTGTGAAGAAG+TGG | + | tig0021333:54380-54399 | Msa1390290:intron | 35.0% | |
| TTTGTTTGTGAATGCGATTC+TGG | + | tig0021333:54450-54469 | Msa1390290:CDS | 35.0% | |
| TTACATTGAGGAATGACACA+TGG | - | tig0021333:54528-54547 | None:intergenic | 35.0% | |
| CTTGTAGGTAGCTTGAATTA+TGG | + | tig0021333:54690-54709 | Msa1390290:intron | 35.0% | |
| GTTACACTTACGATCAAAAG+CGG | - | tig0021333:54769-54788 | None:intergenic | 35.0% | |
| ATCCATAAACTGAACCAAAC+TGG | + | tig0021333:54950-54969 | Msa1390290:intron | 35.0% | |
| !!! | AGTTTTTTTGTGGTCCAGTT+TGG | - | tig0021333:54967-54986 | None:intergenic | 35.0% |
| GCTTACATTCACTGTAACAA+GGG | - | tig0021333:55288-55307 | None:intergenic | 35.0% | |
| TGCTTACATTCACTGTAACA+AGG | - | tig0021333:55289-55308 | None:intergenic | 35.0% | |
| !! | CACTGTGTTGTTGATTTCAA+CGG | + | tig0021333:55766-55785 | Msa1390290:CDS | 35.0% |
| !! | ACTGTGTTGTTGATTTCAAC+GGG | + | tig0021333:55767-55786 | Msa1390290:CDS | 35.0% |
| GTGCTGAACTTCATGATTAT+TGG | + | tig0021333:55837-55856 | Msa1390290:three_prime_UTR | 35.0% | |
| CATGATTATTGGAAGTCTGA+TGG | + | tig0021333:55848-55867 | Msa1390290:three_prime_UTR | 35.0% | |
| TCTCATGTTACTACTTCCCA+TGG | + | tig0021333:54131-54150 | Msa1390290:CDS | 40.0% | |
| TTTGTGAAGAAGTGGAGTGT+GGG | + | tig0021333:54388-54407 | Msa1390290:CDS | 40.0% | |
| TCAAAAGCGGAAATATTGCG+AGG | - | tig0021333:54756-54775 | None:intergenic | 40.0% | |
| ! | GTCCAGTTTGGTTCAGTTTA+TGG | - | tig0021333:54955-54974 | None:intergenic | 40.0% |
| TATTGGGCATATTGTGGAGA+AGG | + | tig0021333:55181-55200 | Msa1390290:CDS | 40.0% | |
| ! | GTGTGTATGTGTCTTGTTCT+TGG | - | tig0021333:55215-55234 | None:intergenic | 40.0% |
| !! | TTGTTACCAACGGACTAATG+AGG | + | tig0021333:55574-55593 | Msa1390290:intron | 40.0% |
| TCAACAACACAGTGATCCAA+TGG | - | tig0021333:55760-55779 | None:intergenic | 40.0% | |
| !! | GTTGTTGATTTCAACGGGTA+TGG | + | tig0021333:55772-55791 | Msa1390290:CDS | 40.0% |
| TTTCAACGGGTATGGTTATG+TGG | + | tig0021333:55780-55799 | Msa1390290:CDS | 40.0% | |
| !! | AAAGCCATGATTCGGTCATT+TGG | + | tig0021333:55942-55961 | Msa1390290:three_prime_UTR | 40.0% |
| ATCTCCAAATGACCGAATCA+TGG | - | tig0021333:55949-55968 | None:intergenic | 40.0% | |
| TCTCATGTTACTACTTCCCA+TGG | + | tig0021333:54131-54150 | Msa1390290:CDS | 40.0% | |
| TTTGTGAAGAAGTGGAGTGT+GGG | + | tig0021333:54388-54407 | Msa1390290:CDS | 40.0% | |
| TCAAAAGCGGAAATATTGCG+AGG | - | tig0021333:54756-54775 | None:intergenic | 40.0% | |
| ! | GTCCAGTTTGGTTCAGTTTA+TGG | - | tig0021333:54955-54974 | None:intergenic | 40.0% |
| TATTGGGCATATTGTGGAGA+AGG | + | tig0021333:55181-55200 | Msa1390290:CDS | 40.0% | |
| ! | GTGTGTATGTGTCTTGTTCT+TGG | - | tig0021333:55215-55234 | None:intergenic | 40.0% |
| !! | TTGTTACCAACGGACTAATG+AGG | + | tig0021333:55574-55593 | Msa1390290:intron | 40.0% |
| TCAACAACACAGTGATCCAA+TGG | - | tig0021333:55760-55779 | None:intergenic | 40.0% | |
| !! | GTTGTTGATTTCAACGGGTA+TGG | + | tig0021333:55772-55791 | Msa1390290:CDS | 40.0% |
| TTTCAACGGGTATGGTTATG+TGG | + | tig0021333:55780-55799 | Msa1390290:CDS | 40.0% | |
| !! | AAAGCCATGATTCGGTCATT+TGG | + | tig0021333:55942-55961 | Msa1390290:three_prime_UTR | 40.0% |
| ATCTCCAAATGACCGAATCA+TGG | - | tig0021333:55949-55968 | None:intergenic | 40.0% | |
| ! | GTTGTTGGGTCTTATAGCCA+TGG | + | tig0021333:54107-54126 | Msa1390290:CDS | 45.0% |
| GTTTGTGAAGAAGTGGAGTG+TGG | + | tig0021333:54387-54406 | Msa1390290:CDS | 45.0% | |
| TTTGTGAATGCGATTCTGGC+TGG | + | tig0021333:54454-54473 | Msa1390290:CDS | 45.0% | |
| !! | AAAGTCTTCTCTGGAACTGG+AGG | - | tig0021333:54732-54751 | None:intergenic | 45.0% |
| !! | GGTAAAGTCTTCTCTGGAAC+TGG | - | tig0021333:54735-54754 | None:intergenic | 45.0% |
| TTGCGAGGTAAAGTCTTCTC+TGG | - | tig0021333:54741-54760 | None:intergenic | 45.0% | |
| ! | ACTAGGGGTGTGCAAAAATG+TGG | + | tig0021333:54914-54933 | Msa1390290:intron | 45.0% |
| !! | GCTTGCTATTGGGCATATTG+TGG | + | tig0021333:55175-55194 | Msa1390290:intron | 45.0% |
| GGATCTGATTGTTCCAGACT+TGG | + | tig0021333:55427-55446 | Msa1390290:CDS | 45.0% | |
| ACCATGACTCTCAACATCTC+CGG | - | tig0021333:55473-55492 | None:intergenic | 45.0% | |
| CTTGAACCTCATTAGTCCGT+TGG | - | tig0021333:55583-55602 | None:intergenic | 45.0% | |
| !! | TCCAAAGATTGAGCTTGCTG+GGG | - | tig0021333:55729-55748 | None:intergenic | 45.0% |
| ! | CTCCAAAGATTGAGCTTGCT+GGG | - | tig0021333:55730-55749 | None:intergenic | 45.0% |
| ! | CAAGCTCAATCTTTGGAGGA+AGG | + | tig0021333:55732-55751 | Msa1390290:CDS | 45.0% |
| ! | TCTTTGGAGGAAGGTTCCAT+TGG | + | tig0021333:55741-55760 | Msa1390290:CDS | 45.0% |
| ATGGTTATGTGGAGCTAGCT+AGG | + | tig0021333:55791-55810 | Msa1390290:exon | 45.0% | |
| AGCTAGCTAGGATGCATAGA+TGG | + | tig0021333:55803-55822 | Msa1390290:exon | 45.0% | |
| ! | GTTGTTGGGTCTTATAGCCA+TGG | + | tig0021333:54107-54126 | Msa1390290:CDS | 45.0% |
| GTTTGTGAAGAAGTGGAGTG+TGG | + | tig0021333:54387-54406 | Msa1390290:CDS | 45.0% | |
| TTTGTGAATGCGATTCTGGC+TGG | + | tig0021333:54454-54473 | Msa1390290:CDS | 45.0% | |
| !! | AAAGTCTTCTCTGGAACTGG+AGG | - | tig0021333:54732-54751 | None:intergenic | 45.0% |
| !! | GGTAAAGTCTTCTCTGGAAC+TGG | - | tig0021333:54735-54754 | None:intergenic | 45.0% |
| TTGCGAGGTAAAGTCTTCTC+TGG | - | tig0021333:54741-54760 | None:intergenic | 45.0% | |
| ! | ACTAGGGGTGTGCAAAAATG+TGG | + | tig0021333:54914-54933 | Msa1390290:intron | 45.0% |
| !! | GCTTGCTATTGGGCATATTG+TGG | + | tig0021333:55175-55194 | Msa1390290:intron | 45.0% |
| GGATCTGATTGTTCCAGACT+TGG | + | tig0021333:55427-55446 | Msa1390290:CDS | 45.0% | |
| ACCATGACTCTCAACATCTC+CGG | - | tig0021333:55473-55492 | None:intergenic | 45.0% | |
| CTTGAACCTCATTAGTCCGT+TGG | - | tig0021333:55583-55602 | None:intergenic | 45.0% | |
| !! | TCCAAAGATTGAGCTTGCTG+GGG | - | tig0021333:55729-55748 | None:intergenic | 45.0% |
| ! | CTCCAAAGATTGAGCTTGCT+GGG | - | tig0021333:55730-55749 | None:intergenic | 45.0% |
| ! | CAAGCTCAATCTTTGGAGGA+AGG | + | tig0021333:55732-55751 | Msa1390290:CDS | 45.0% |
| ! | TCTTTGGAGGAAGGTTCCAT+TGG | + | tig0021333:55741-55760 | Msa1390290:CDS | 45.0% |
| ATGGTTATGTGGAGCTAGCT+AGG | + | tig0021333:55791-55810 | Msa1390290:exon | 45.0% | |
| AGCTAGCTAGGATGCATAGA+TGG | + | tig0021333:55803-55822 | Msa1390290:exon | 45.0% | |
| !! | AAATAAATATATAAGAATTA+AGG | + | tig0021333:54595-54614 | Msa1390290:intron | 5.0% |
| !! | AAATAAATATATAAGAATTA+AGG | + | tig0021333:54595-54614 | Msa1390290:intron | 5.0% |
| TACTTCCCATGGCTGCCAAA+GGG | + | tig0021333:54142-54161 | Msa1390290:CDS | 50.0% | |
| AAATCCCCTTTGGCAGCCAT+GGG | - | tig0021333:54150-54169 | None:intergenic | 50.0% | |
| AAAATCCCCTTTGGCAGCCA+TGG | - | tig0021333:54151-54170 | None:intergenic | 50.0% | |
| GAAGAAGTGGAGTGTGGGAA+AGG | + | tig0021333:54393-54412 | Msa1390290:CDS | 50.0% | |
| GTGTGGGAAAGGAAACTGTG+TGG | + | tig0021333:54404-54423 | Msa1390290:CDS | 50.0% | |
| ACCGGAGATGTTGAGAGTCA+TGG | + | tig0021333:55469-55488 | Msa1390290:CDS | 50.0% | |
| TCCCCAGCAAGCTCAATCTT+TGG | + | tig0021333:55725-55744 | Msa1390290:intron | 50.0% | |
| CCTCCAAAGATTGAGCTTGC+TGG | - | tig0021333:55731-55750 | None:intergenic | 50.0% | |
| CCAGCAAGCTCAATCTTTGG+AGG | + | tig0021333:55728-55747 | Msa1390290:intron | 50.0% | |
| TACTTCCCATGGCTGCCAAA+GGG | + | tig0021333:54142-54161 | Msa1390290:CDS | 50.0% | |
| AAATCCCCTTTGGCAGCCAT+GGG | - | tig0021333:54150-54169 | None:intergenic | 50.0% | |
| AAAATCCCCTTTGGCAGCCA+TGG | - | tig0021333:54151-54170 | None:intergenic | 50.0% | |
| GAAGAAGTGGAGTGTGGGAA+AGG | + | tig0021333:54393-54412 | Msa1390290:CDS | 50.0% | |
| GTGTGGGAAAGGAAACTGTG+TGG | + | tig0021333:54404-54423 | Msa1390290:CDS | 50.0% | |
| ACCGGAGATGTTGAGAGTCA+TGG | + | tig0021333:55469-55488 | Msa1390290:CDS | 50.0% | |
| TCCCCAGCAAGCTCAATCTT+TGG | + | tig0021333:55725-55744 | Msa1390290:intron | 50.0% | |
| CCTCCAAAGATTGAGCTTGC+TGG | - | tig0021333:55731-55750 | None:intergenic | 50.0% | |
| CCAGCAAGCTCAATCTTTGG+AGG | + | tig0021333:55728-55747 | Msa1390290:intron | 50.0% | |
| CTACTTCCCATGGCTGCCAA+AGG | + | tig0021333:54141-54160 | Msa1390290:CDS | 55.0% | |
| ACTTCCCATGGCTGCCAAAG+GGG | + | tig0021333:54143-54162 | Msa1390290:CDS | 55.0% | |
| !! | GTCTTCTCTGGAACTGGAGG+AGG | - | tig0021333:54729-54748 | None:intergenic | 55.0% |
| CTACTTCCCATGGCTGCCAA+AGG | + | tig0021333:54141-54160 | Msa1390290:CDS | 55.0% | |
| ACTTCCCATGGCTGCCAAAG+GGG | + | tig0021333:54143-54162 | Msa1390290:CDS | 55.0% | |
| !! | GTCTTCTCTGGAACTGGAGG+AGG | - | tig0021333:54729-54748 | None:intergenic | 55.0% |
| !! | GAACTGGAGGAGGTGCTGGT+TGG | - | tig0021333:54719-54738 | None:intergenic | 60.0% |
| ! | TCTGGAACTGGAGGAGGTGC+TGG | - | tig0021333:54723-54742 | None:intergenic | 60.0% |
| !! | GAACTGGAGGAGGTGCTGGT+TGG | - | tig0021333:54719-54738 | None:intergenic | 60.0% |
| ! | TCTGGAACTGGAGGAGGTGC+TGG | - | tig0021333:54723-54742 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021333 | gene | 54022 | 56121 | 54022 | ID=Msa1390290;Name=Msa1390290 |
| tig0021333 | mRNA | 54022 | 56121 | 54022 | ID=Msa1390290-mRNA-1;Parent=Msa1390290;Name=Msa1390290-mRNA-1;_AED=0.15;_eAED=0.15;_QI=71|0.75|1|1|0.75|1|5|313|176 |
| tig0021333 | exon | 54022 | 54186 | 54022 | ID=Msa1390290-mRNA-1:exon:12121;Parent=Msa1390290-mRNA-1 |
| tig0021333 | exon | 54382 | 54543 | 54382 | ID=Msa1390290-mRNA-1:exon:12122;Parent=Msa1390290-mRNA-1 |
| tig0021333 | exon | 55176 | 55301 | 55176 | ID=Msa1390290-mRNA-1:exon:12123;Parent=Msa1390290-mRNA-1 |
| tig0021333 | exon | 55419 | 55490 | 55419 | ID=Msa1390290-mRNA-1:exon:12124;Parent=Msa1390290-mRNA-1 |
| tig0021333 | exon | 55732 | 56121 | 55732 | ID=Msa1390290-mRNA-1:exon:12125;Parent=Msa1390290-mRNA-1 |
| tig0021333 | five_prime_UTR | 54022 | 54092 | 54022 | ID=Msa1390290-mRNA-1:five_prime_utr;Parent=Msa1390290-mRNA-1 |
| tig0021333 | CDS | 54093 | 54186 | 54093 | ID=Msa1390290-mRNA-1:cds;Parent=Msa1390290-mRNA-1 |
| tig0021333 | CDS | 54382 | 54543 | 54382 | ID=Msa1390290-mRNA-1:cds;Parent=Msa1390290-mRNA-1 |
| tig0021333 | CDS | 55176 | 55301 | 55176 | ID=Msa1390290-mRNA-1:cds;Parent=Msa1390290-mRNA-1 |
| tig0021333 | CDS | 55419 | 55490 | 55419 | ID=Msa1390290-mRNA-1:cds;Parent=Msa1390290-mRNA-1 |
| tig0021333 | CDS | 55732 | 55808 | 55732 | ID=Msa1390290-mRNA-1:cds;Parent=Msa1390290-mRNA-1 |
| tig0021333 | three_prime_UTR | 55809 | 56121 | 55809 | ID=Msa1390290-mRNA-1:three_prime_utr;Parent=Msa1390290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
