Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664140 | XP_013454559.1 | 89.789 | 568 | 58 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664140 | sp|Q8LPJ4|AB2E_ARATH | 81.547 | 569 | 104 | 1 | 1 | 568 | 5 | 573 | 0.0 | 972 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664140 | A0A072URT6 | 89.789 | 568 | 58 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1056 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018610 | Msa0664140 | -0.810440 | 1.151627e-50 | -8.615850e-47 |
| Msa0620050 | Msa0664140 | -0.801697 | 7.969326e-49 | -8.615850e-47 |
| Msa0644220 | Msa0664140 | -0.807045 | 6.123119e-50 | -8.615850e-47 |
| Msa0664100 | Msa0664140 | 0.979342 | 9.276897e-148 | -8.615850e-47 |
| Msa0664140 | Msa0684030 | -0.800569 | 1.355429e-48 | -8.615850e-47 |
| Msa0664140 | Msa0699200 | -0.801385 | 9.233250e-49 | -8.615850e-47 |
| Msa0664140 | Msa0711860 | -0.800051 | 1.727623e-48 | -8.615850e-47 |
| Msa0664140 | Msa0745010 | -0.821484 | 3.940542e-53 | -8.615850e-47 |
| Msa0664140 | Msa0784780 | -0.805264 | 1.452017e-49 | -8.615850e-47 |
| Msa0664140 | Msa0978540 | -0.801230 | 9.931731e-49 | -8.615850e-47 |
| Msa0664140 | Msa0995130 | -0.802272 | 6.069675e-49 | -8.615850e-47 |
| Msa0664140 | Msa1037440 | -0.806046 | 9.947574e-50 | -8.615850e-47 |
| Msa0664140 | Msa1044460 | 0.994499 | 9.422284e-208 | -8.615850e-47 |
| Msa0664140 | Msa1058550 | -0.800351 | 1.501237e-48 | -8.615850e-47 |
| Msa0664140 | Msa1095880 | -0.800921 | 1.148675e-48 | -8.615850e-47 |
| Msa0664140 | Msa1269730 | -0.808628 | 2.820720e-50 | -8.615850e-47 |
| Msa0664140 | Msa1295480 | -0.816500 | 5.357023e-52 | -8.615850e-47 |
| Msa0664140 | Msa1330080 | -0.815184 | 1.053081e-51 | -8.615850e-47 |
| Msa0664140 | Msa1432360 | 0.802056 | 6.721983e-49 | -8.615850e-47 |
| Msa0664140 | Msa1462700 | -0.806672 | 7.341423e-50 | -8.615850e-47 |
| Msa0127510 | Msa0664140 | -0.810994 | 8.740077e-51 | -8.615850e-47 |
| Msa0175210 | Msa0664140 | -0.810952 | 8.923053e-51 | -8.615850e-47 |
| Msa0224180 | Msa0664140 | -0.802164 | 6.387898e-49 | -8.615850e-47 |
| Msa0382050 | Msa0664140 | -0.802280 | 6.045533e-49 | -8.615850e-47 |
| Msa0390760 | Msa0664140 | -0.802482 | 5.495455e-49 | -8.615850e-47 |
| Msa0393880 | Msa0664140 | -0.813232 | 2.841025e-51 | -8.615850e-47 |
| Msa0397420 | Msa0664140 | -0.801144 | 1.034061e-48 | -8.615850e-47 |
| Msa0347280 | Msa0664140 | -0.829795 | 4.214234e-55 | -8.615850e-47 |
| Msa0489330 | Msa0664140 | -0.827455 | 1.549958e-54 | -8.615850e-47 |
| Msa0586230 | Msa0664140 | 0.937688 | 2.304334e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664140 | MtrunA17_Chr4g0002101 | 89.789 | 568 | 58 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1056 |
| Msa0664140 | MtrunA17_Chr1g0211721 | 85.965 | 570 | 78 | 2 | 1 | 568 | 5 | 574 | 0.0 | 1014 |
| Msa0664140 | MtrunA17_Chr1g0156551 | 83.509 | 570 | 92 | 2 | 1 | 568 | 82 | 651 | 0.0 | 988 |
| Msa0664140 | MtrunA17_Chr1g0156441 | 81.092 | 238 | 43 | 2 | 327 | 562 | 16 | 253 | 8.56e-135 | 397 |
| Msa0664140 | MtrunA17_Chr1g0156441 | 31.466 | 232 | 129 | 6 | 99 | 324 | 59 | 266 | 3.02e-25 | 105 |
| Msa0664140 | MtrunA17_Chr1g0156461 | 67.857 | 196 | 62 | 1 | 3 | 198 | 8 | 202 | 1.93e-92 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664140 | AT4G19210.1 | 81.547 | 569 | 104 | 1 | 1 | 568 | 5 | 573 | 0.0 | 972 |
| Msa0664140 | AT3G13640.1 | 72.583 | 569 | 153 | 2 | 1 | 568 | 5 | 571 | 0.0 | 870 |
| Msa0664140 | AT4G30300.1 | 64.571 | 175 | 60 | 2 | 350 | 522 | 1 | 175 | 6.30e-66 | 216 |
| Msa0664140 | AT4G30300.1 | 25.140 | 179 | 100 | 5 | 100 | 265 | 21 | 178 | 4.47e-11 | 62.8 |
Find 184 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAGTTGGAGCCAAATT+TGG | 0.165233 | 4_4:+3171204 | Msa0664140:CDS |
| CGTAATGTTGGTGATCTTTC+AGG | 0.171930 | 4_4:+3172425 | Msa0664140:CDS |
| TATCAACTTGCCGGAGAATT+TGG | 0.186930 | 4_4:+3170944 | Msa0664140:CDS |
| GTCCACTGCCCTTAGAATTT+TGG | 0.194239 | 4_4:+3171180 | Msa0664140:CDS |
| AATGCAACAACTCAACAATT+TGG | 0.207468 | 4_4:+3175512 | Msa0664140:CDS |
| CAGTTGAATATTGGTGGTTT+GGG | 0.226415 | 4_4:+3170507 | Msa0664140:intron |
| TCATATCTCTCTCATTGTTT+TGG | 0.229197 | 4_4:-3172358 | None:intergenic |
| CCTGAACTTGCCTTGAGTTT+TGG | 0.246863 | 4_4:-3173416 | None:intergenic |
| ACTTTCCAGCCAAAATTCTA+AGG | 0.272957 | 4_4:-3171189 | None:intergenic |
| ATTATCTTTCAGTTGAATAT+TGG | 0.278478 | 4_4:+3170498 | Msa0664140:intron |
| CAACAGAAAATCTTAGGTTT+CGG | 0.282822 | 4_4:+3172860 | Msa0664140:CDS |
| TTGTTCCAACAGAAAATCTT+AGG | 0.290058 | 4_4:+3172854 | Msa0664140:CDS |
| ACAGTGAAACGACCCAAATT+TGG | 0.292894 | 4_4:-3171217 | None:intergenic |
| GATGAATTCTTTCATGTAAC+AGG | 0.293045 | 4_4:-3173732 | None:intergenic |
| TCAGTTGAATATTGGTGGTT+TGG | 0.296899 | 4_4:+3170506 | Msa0664140:intron |
| TCATCACATCTGATATAAAC+TGG | 0.305491 | 4_4:-3173771 | None:intergenic |
| AACAGAAAATCTTAGGTTTC+GGG | 0.307649 | 4_4:+3172861 | Msa0664140:CDS |
| ACTAGTTACAGAGCGGTAAA+AGG | 0.311457 | 4_4:+3170116 | None:intergenic |
| GACTTTATTTGCTGTTTGTA+TGG | 0.317741 | 4_4:+3172757 | Msa0664140:CDS |
| ACTAGAAAGGTGTGCCTTGC+CGG | 0.329398 | 4_4:-3170196 | None:intergenic |
| TCAAGGTAATAAACTAAAAC+TGG | 0.340272 | 4_4:-3175538 | None:intergenic |
| GGTCATTGCTAAGGCATAAT+AGG | 0.365075 | 4_4:+3172570 | Msa0664140:CDS |
| GGCCGAAATCATACCAAAAC+TGG | 0.365388 | 4_4:-3175859 | None:intergenic |
| CTGTGTAGCTTAAAAGTATT+AGG | 0.366567 | 4_4:-3170993 | None:intergenic |
| GAACCAAGTTTGTTGATCCT+TGG | 0.372441 | 4_4:-3175331 | None:intergenic |
| AACCAAGTTTGTTGATCCTT+GGG | 0.373348 | 4_4:-3175330 | None:intergenic |
| CTTTCGAGATGAGAGTTTGA+AGG | 0.373390 | 4_4:+3171406 | Msa0664140:CDS |
| TAACAGTTGATTTGAACTTT+GGG | 0.374527 | 4_4:-3173705 | None:intergenic |
| CTAACAGTTGATTTGAACTT+TGG | 0.376761 | 4_4:-3173706 | None:intergenic |
| CGCCCAAGGATCAACAAACT+TGG | 0.378870 | 4_4:+3175328 | Msa0664140:CDS |
| CGTTGCCCTGTCGTCATAAC+CGG | 0.380336 | 4_4:+3170604 | Msa0664140:CDS |
| ATGTTGCTCATGGCCAGTTT+TGG | 0.381147 | 4_4:+3175846 | Msa0664140:CDS |
| GATAGAGAGCAAAAGCTTGC+TGG | 0.383710 | 4_4:+3175361 | Msa0664140:CDS |
| TTGAGAAAGATGGCTTCAAC+AGG | 0.384287 | 4_4:-3175745 | None:intergenic |
| TGTAGTTGGAGGAGAATTTA+CGG | 0.386210 | 4_4:+3173444 | Msa0664140:CDS |
| ATTGATCACATTCATAAAAC+GGG | 0.386877 | 4_4:+3172308 | Msa0664140:CDS |
| AATTAAGATTATCAACTTGC+CGG | 0.388066 | 4_4:+3170935 | Msa0664140:CDS |
| GGAAAGTTGGAGCCAAATTT+GGG | 0.390741 | 4_4:+3171205 | Msa0664140:CDS |
| GTCAAAATTTCCTGCCAGTC+AGG | 0.392453 | 4_4:-3171344 | None:intergenic |
| GCTTATTACACAGTTTATAT+CGG | 0.395148 | 4_4:+3175891 | Msa0664140:three_prime_UTR |
| TGCAGCAATAATACGCTGTT+CGG | 0.396922 | 4_4:-3174951 | None:intergenic |
| TGACAGAGTTATTGTTTATG+AGG | 0.398914 | 4_4:+3175057 | Msa0664140:CDS |
| CAACAGCAATGGCAAACCTT+TGG | 0.402310 | 4_4:-3172457 | None:intergenic |
| GACATCAAATAAATTAAAAC+TGG | 0.409077 | 4_4:-3175707 | None:intergenic |
| AGCAACATCGCTAAGTATTA+CGG | 0.412171 | 4_4:-3175831 | None:intergenic |
| CCGAGGCCGGGGAAAGTGCT+TGG | 0.412378 | 4_4:+3171130 | Msa0664140:CDS |
| ACTTTCCCCGGCCTCGGAAC+CGG | 0.412394 | 4_4:-3171124 | None:intergenic |
| GGGAAAGTGCTTGGTTTGGT+TGG | 0.414362 | 4_4:+3171139 | Msa0664140:CDS |
| AGTTGTGTATTATAGGTTGC+CGG | 0.415419 | 4_4:+3171105 | Msa0664140:intron |
| TATAATACAGGTTAGCTTCA+AGG | 0.416213 | 4_4:+3172277 | Msa0664140:intron |
| ATCCTTGGGCGGAAATTAGT+TGG | 0.419970 | 4_4:-3175316 | None:intergenic |
| TGCAAAGAAAACAGCCTTTG+TGG | 0.420036 | 4_4:+3175000 | Msa0664140:CDS |
| CCAAAACTCAAGGCAAGTTC+AGG | 0.420940 | 4_4:+3173416 | Msa0664140:CDS |
| AGGTTGCCGGTTCCGAGGCC+GGG | 0.422004 | 4_4:+3171118 | Msa0664140:intron |
| GCCGGGGAAAGTGCTTGGTT+TGG | 0.422861 | 4_4:+3171135 | Msa0664140:CDS |
| ATGCAACAACTCAACAATTT+GGG | 0.423564 | 4_4:+3175513 | Msa0664140:CDS |
| GGAATTAATATCTTCTTGTC+TGG | 0.423856 | 4_4:+3172829 | Msa0664140:CDS |
| TCTATATCCATTGAGAAAGA+TGG | 0.425133 | 4_4:-3175755 | None:intergenic |
| ATAATCTTAATTGCTTCAAA+AGG | 0.425895 | 4_4:-3170924 | None:intergenic |
| GGAAAGTGCTTGGTTTGGTT+GGG | 0.426497 | 4_4:+3171140 | Msa0664140:CDS |
| TATTGATCACATTCATAAAA+CGG | 0.431274 | 4_4:+3172307 | Msa0664140:CDS |
| GTTTCCTTATGTCTTTGTCT+TGG | 0.432752 | 4_4:+3173862 | Msa0664140:CDS |
| GGATGACTCTCTTACCTTCA+AGG | 0.434243 | 4_4:+3172882 | Msa0664140:CDS |
| TAGGTTGCCGGTTCCGAGGC+CGG | 0.434876 | 4_4:+3171117 | Msa0664140:intron |
| ATTCCTTCTCTGACTGAGAA+AGG | 0.437002 | 4_4:-3172811 | None:intergenic |
| ATAGATTATTTATACCTTGA+AGG | 0.440136 | 4_4:-3172896 | None:intergenic |
| GTAATGTTGGTGATCTTTCA+GGG | 0.441278 | 4_4:+3172426 | Msa0664140:CDS |
| TCTCCACAATCACTGCTGAC+TGG | 0.442692 | 4_4:+3175109 | Msa0664140:CDS |
| ATCTTTCAGTTGAATATTGG+TGG | 0.443272 | 4_4:+3170501 | Msa0664140:intron |
| TTACCTTGATGACTAAGTTC+AGG | 0.448177 | 4_4:+3175393 | Msa0664140:CDS |
| TCTCAGATTGTTGTTATGCT+TGG | 0.451315 | 4_4:+3173469 | Msa0664140:CDS |
| GTTGTTATGCTTGGTGAGAA+TGG | 0.453138 | 4_4:+3173478 | Msa0664140:CDS |
| TGAACACGATCTTAGTGTCT+TGG | 0.458360 | 4_4:+3172723 | Msa0664140:CDS |
| CTTATGTCTTTGTCTTGGAA+AGG | 0.458540 | 4_4:+3173867 | Msa0664140:CDS |
| TGGATGTGGTATTTGTGTTA+AGG | 0.458616 | 4_4:+3170792 | Msa0664140:CDS |
| AAAGGTGTGCCTTGCCGGAC+GGG | 0.459595 | 4_4:-3170191 | None:intergenic |
| AAAGACACCACTCATAGATA+TGG | 0.460544 | 4_4:+3170969 | Msa0664140:CDS |
| TGTTGCATTGGCAAAAGAGC+AGG | 0.462602 | 4_4:-3175498 | None:intergenic |
| GTTTGCAGAACCCTCCTGAC+TGG | 0.466184 | 4_4:+3171330 | Msa0664140:intron |
| CTCCACAATCACTGCTGACT+GGG | 0.473425 | 4_4:+3175110 | Msa0664140:CDS |
| GCAGAACCCTCCTGACTGGC+AGG | 0.473883 | 4_4:+3171334 | Msa0664140:intron |
| GTTGAAGCCATCTTTCTCAA+TGG | 0.474658 | 4_4:+3175748 | Msa0664140:CDS |
| TATGGAACACCTGGTGCATA+TGG | 0.475475 | 4_4:+3172775 | Msa0664140:CDS |
| ACGCGTATTGCCATTGTCAA+TGG | 0.480880 | 4_4:+3170538 | Msa0664140:CDS |
| CTCACATCAAGATAACTAGA+AGG | 0.483153 | 4_4:-3172518 | None:intergenic |
| TTTGCAGTACAGTCAATTGA+AGG | 0.483786 | 4_4:-3175085 | None:intergenic |
| GCCGTCGCACCTTTCCCGTC+CGG | 0.484145 | 4_4:+3170177 | Msa0664140:five_prime_UTR |
| CTCTCTCTCTATTCACCGAC+AGG | 0.488866 | 4_4:+3170228 | Msa0664140:five_prime_UTR |
| AACTTTGGGTTAATTGTCTG+AGG | 0.488966 | 4_4:-3173691 | None:intergenic |
| ACCAAACCAAGCACTTTCCC+CGG | 0.489846 | 4_4:-3171136 | None:intergenic |
| ATCATACCGGTTATGACGAC+AGG | 0.490261 | 4_4:-3170610 | None:intergenic |
| TGAAAGCTGCCCAAGTTGTC+CGG | 0.491384 | 4_4:+3172549 | Msa0664140:CDS |
| TGCTGTTTGTATGGAACACC+TGG | 0.492329 | 4_4:+3172766 | Msa0664140:CDS |
| TGTTGCATTGGCAAAAGAGC+AGG | 0.493165 | 4_4:-3175665 | None:intergenic |
| GTGTCTTTGTCCAAATTCTC+CGG | 0.498181 | 4_4:-3170954 | None:intergenic |
| TATAGGAAGATTGTGTATTG+AGG | 0.500669 | 4_4:+3170723 | Msa0664140:intron |
| ATAAATTATGAGAGCTGAGA+TGG | 0.501113 | 4_4:-3175974 | None:intergenic |
| TTGTTATGCTTGGTGAGAAT+GGG | 0.504018 | 4_4:+3173479 | Msa0664140:CDS |
| AAGTTCAGGCTTCGTGTAGT+TGG | 0.505597 | 4_4:+3173430 | Msa0664140:CDS |
| GGTTGCCGGTTCCGAGGCCG+GGG | 0.505721 | 4_4:+3171119 | Msa0664140:intron |
| AAACAATGAGAGAGATATGA+AGG | 0.508578 | 4_4:+3172361 | Msa0664140:CDS |
| CACATTCATAAAACGGGGCA+AGG | 0.508774 | 4_4:+3172314 | Msa0664140:CDS |
| TAACACATACTGATAAGAAA+AGG | 0.514344 | 4_4:-3175138 | None:intergenic |
| GACAACATTCATCCGTATGC+TGG | 0.519437 | 4_4:+3173510 | Msa0664140:CDS |
| TTCAGGCTTCGTGTAGTTGG+AGG | 0.519982 | 4_4:+3173433 | Msa0664140:CDS |
| TAAAACGGGGCAAGGGAACG+TGG | 0.521293 | 4_4:+3172322 | Msa0664140:CDS |
| TACACAGTTTATATCGGTCA+TGG | 0.523785 | 4_4:+3175897 | Msa0664140:three_prime_UTR |
| TCAGATCCACCTATAGTGTC+AGG | 0.525068 | 4_4:-3173634 | None:intergenic |
| AGCCAAAATTCTAAGGGCAG+TGG | 0.528739 | 4_4:-3171182 | None:intergenic |
| ATAGAGAGCAAAAGCTTGCT+GGG | 0.529331 | 4_4:+3175362 | Msa0664140:CDS |
| TCTATCAGATAAATGTCTGC+AGG | 0.531946 | 4_4:-3174905 | None:intergenic |
| TGTGCCTTGCCGGACGGGAA+AGG | 0.532065 | 4_4:-3170186 | None:intergenic |
| CGGCGCAATCGCAAGGAGAG+TGG | 0.533803 | 4_4:-3170158 | None:intergenic |
| CTTTCCAAGACAAAGACATA+AGG | 0.539595 | 4_4:-3173866 | None:intergenic |
| TTAGCAATGACCGGACAACT+TGG | 0.539932 | 4_4:-3172559 | None:intergenic |
| CGCACCTTTCCCGTCCGGCA+AGG | 0.539935 | 4_4:+3170182 | Msa0664140:five_prime_UTR |
| TCATTGAAACCTGACACTAT+AGG | 0.540340 | 4_4:+3173625 | Msa0664140:CDS |
| CAAGTTATAGATCGTAATGT+TGG | 0.541369 | 4_4:+3172413 | Msa0664140:CDS |
| GACAGAGTTATTGTTTATGA+GGG | 0.542830 | 4_4:+3175058 | Msa0664140:CDS |
| CATCACATCTGATATAAACT+GGG | 0.543431 | 4_4:-3173770 | None:intergenic |
| CTTCCTTTCTCAGTCAGAGA+AGG | 0.543896 | 4_4:+3172808 | Msa0664140:CDS |
| CCAAGCACTTTCCCCGGCCT+CGG | 0.544800 | 4_4:-3171130 | None:intergenic |
| GAAAGGTGTGCCTTGCCGGA+CGG | 0.547606 | 4_4:-3170192 | None:intergenic |
| ACATCCAGTGCACAATTCCT+CGG | 0.548548 | 4_4:-3170776 | None:intergenic |
| ATCCCAGTCAGCAGTGATTG+TGG | 0.548844 | 4_4:-3175112 | None:intergenic |
| ACTACTTATCGAACAGCTGA+TGG | 0.549716 | 4_4:+3173798 | Msa0664140:CDS |
| AAACCTGAACTTAGTCATCA+AGG | 0.550955 | 4_4:-3175396 | None:intergenic |
| GGTGCGACGGCGCAATCGCA+AGG | 0.553576 | 4_4:-3170165 | None:intergenic |
| AAAACGGGGCAAGGGAACGT+GGG | 0.554809 | 4_4:+3172323 | Msa0664140:CDS |
| AGAGGACGGTGAAACTAGAA+AGG | 0.558715 | 4_4:-3170209 | None:intergenic |
| TTGCTGCAAAAGTTATCAAG+AGG | 0.559789 | 4_4:+3174966 | Msa0664140:CDS |
| CTATCCGAGGAATTGTGCAC+TGG | 0.564876 | 4_4:+3170772 | Msa0664140:CDS |
| TGAGCTTCAGCAGTTTCATG+TGG | 0.568344 | 4_4:-3173361 | None:intergenic |
| AAATTGTTGAGATGTTGCAT+TGG | 0.572373 | 4_4:-3175677 | None:intergenic |
| CTTTCCAGCCAAAATTCTAA+GGG | 0.572535 | 4_4:-3171188 | None:intergenic |
| ATACTTAGCGATGTTGCTCA+TGG | 0.572848 | 4_4:+3175836 | Msa0664140:CDS |
| ATCCAACTAATTTCCGCCCA+AGG | 0.577928 | 4_4:+3175314 | Msa0664140:CDS |
| TGTGTAATAAGCAGATTCAC+TGG | 0.578646 | 4_4:-3175880 | None:intergenic |
| AAATTGTTGAGTTGTTGCAT+TGG | 0.580429 | 4_4:-3175510 | None:intergenic |
| CACTATAGGTGGATCTGATG+TGG | 0.580575 | 4_4:+3173639 | Msa0664140:CDS |
| AAGTTGTCCGGTCATTGCTA+AGG | 0.581006 | 4_4:+3172561 | Msa0664140:CDS |
| CGCAATCGCAAGGAGAGTGG+AGG | 0.581707 | 4_4:-3170155 | None:intergenic |
| TATTATGCCTTAGCAATGAC+CGG | 0.582030 | 4_4:-3172568 | None:intergenic |
| CAGTGCACAATTCCTCGGAT+AGG | 0.583504 | 4_4:-3170771 | None:intergenic |
| TTGTGTGAAATATTGAACTC+AGG | 0.583680 | 4_4:-3173667 | None:intergenic |
| AAAATTTCCTGCCAGTCAGG+AGG | 0.583757 | 4_4:-3171341 | None:intergenic |
| TCGGAATCAAGATGTGCACT+TGG | 0.586777 | 4_4:-3174932 | None:intergenic |
| TAGCAATGACCGGACAACTT+GGG | 0.588276 | 4_4:-3172558 | None:intergenic |
| ACTAAAAGAATACCAGCATA+CGG | 0.589186 | 4_4:-3173522 | None:intergenic |
| CATGCAGAGCATATGTTGGT+TGG | 0.591317 | 4_4:+3175791 | Msa0664140:CDS |
| ATCAGCTGTTCGATAAGTAG+TGG | 0.593241 | 4_4:-3173796 | None:intergenic |
| ATGGCGATAAACTTAATATG+TGG | 0.593735 | 4_4:-3175955 | None:intergenic |
| AGTTGAATATTGGTGGTTTG+GGG | 0.595891 | 4_4:+3170508 | Msa0664140:intron |
| GAGGAATTGTGCACTGGATG+TGG | 0.596595 | 4_4:+3170778 | Msa0664140:CDS |
| GCTACATGCAGAGCATATGT+TGG | 0.599972 | 4_4:+3175787 | Msa0664140:CDS |
| TAGGAGGGCAGCAACAGCAA+TGG | 0.601333 | 4_4:-3172468 | None:intergenic |
| AAATTTCCTGCCAGTCAGGA+GGG | 0.605918 | 4_4:-3171340 | None:intergenic |
| ATTATAGGTTGCCGGTTCCG+AGG | 0.606131 | 4_4:+3171113 | Msa0664140:intron |
| CAAGTTTGTTGATCCTTGGG+CGG | 0.607651 | 4_4:-3175327 | None:intergenic |
| CTGTCGGTGAATAGAGAGAG+AGG | 0.609135 | 4_4:-3170227 | None:intergenic |
| ATGCTTGGTGAGAATGGGAC+GGG | 0.610087 | 4_4:+3173484 | Msa0664140:CDS |
| TAATGTTGGTGATCTTTCAG+GGG | 0.618828 | 4_4:+3172427 | Msa0664140:CDS |
| GGTTGAGCATGATTTCATCA+TGG | 0.619459 | 4_4:+3175021 | Msa0664140:CDS |
| GCCGGACGGGAAAGGTGCGA+CGG | 0.621346 | 4_4:-3170178 | None:intergenic |
| GTGGCATCATTATTCAGTCA+AGG | 0.625338 | 4_4:-3175936 | None:intergenic |
| AAACGGGGCAAGGGAACGTG+GGG | 0.627128 | 4_4:+3172324 | Msa0664140:CDS |
| GCATCTGTCTCCATTGACAA+TGG | 0.633618 | 4_4:-3170548 | None:intergenic |
| GCAATCGCAAGGAGAGTGGA+GGG | 0.634318 | 4_4:-3170154 | None:intergenic |
| ACATTCATAAAACGGGGCAA+GGG | 0.634571 | 4_4:+3172315 | Msa0664140:CDS |
| TTGAAACCTGACACTATAGG+TGG | 0.643934 | 4_4:+3173628 | Msa0664140:CDS |
| GAAATCATGCTCAACCACAA+AGG | 0.644019 | 4_4:-3175014 | None:intergenic |
| CGGTGAATAGAGAGAGAGGA+CGG | 0.653776 | 4_4:-3170223 | None:intergenic |
| AATGTTGGTGATCTTTCAGG+GGG | 0.657975 | 4_4:+3172428 | Msa0664140:CDS |
| CCAACCATGACCAAAACTCA+AGG | 0.658017 | 4_4:+3173406 | Msa0664140:CDS |
| GAAGATTGCTTACCTATCCG+AGG | 0.658534 | 4_4:+3170759 | Msa0664140:CDS |
| GTTACGACTCCATATGCACC+AGG | 0.659399 | 4_4:-3172784 | None:intergenic |
| ATTAGGACCATATCTATGAG+TGG | 0.668366 | 4_4:-3170976 | None:intergenic |
| CAACAAACTTGGTTCAACCA+AGG | 0.671800 | 4_4:+3175339 | Msa0664140:CDS |
| GTTATCTTGATGTGAGACAG+AGG | 0.675184 | 4_4:+3172525 | Msa0664140:CDS |
| TATGCTTGGTGAGAATGGGA+CGG | 0.683302 | 4_4:+3173483 | Msa0664140:CDS |
| ATCACATCTGATATAAACTG+GGG | 0.688133 | 4_4:-3173769 | None:intergenic |
| TGAGAAAGATGGCTTCAACA+GGG | 0.694330 | 4_4:-3175744 | None:intergenic |
| TCATACCGGTTATGACGACA+GGG | 0.697152 | 4_4:-3170609 | None:intergenic |
| TTGATCACATTCATAAAACG+GGG | 0.709656 | 4_4:+3172309 | Msa0664140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTAAAAAAAAAAATTAC+TGG | - | chr4_4:3171538-3171557 | None:intergenic | 10.0% |
| !! | ATTACATAATAATTGATAAA+TGG | - | chr4_4:3171588-3171607 | None:intergenic | 10.0% |
| !! | ATTTATCAATTATTATGTAA+TGG | + | chr4_4:3171587-3171606 | Msa0664140:intron | 10.0% |
| !!! | AAAATGTTTTTCAAAATTAA+AGG | - | chr4_4:3172093-3172112 | None:intergenic | 10.0% |
| !! | TATTCTTATAAATTAGATAT+TGG | + | chr4_4:3173237-3173256 | Msa0664140:intron | 10.0% |
| !! | GAATTCAATTAATATTTATA+TGG | - | chr4_4:3174693-3174712 | None:intergenic | 10.0% |
| !!! | TGAAATTTTATGTTAATGTT+TGG | + | chr4_4:3170657-3170676 | Msa0664140:intron | 15.0% |
| !!! | AAAAAAAAAAAGGCTAATTT+TGG | - | chr4_4:3171248-3171267 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTATACCG+TGG | + | chr4_4:3171260-3171279 | Msa0664140:intron | 15.0% |
| !! | TACAAAACGATATTAAATAA+AGG | - | chr4_4:3171444-3171463 | None:intergenic | 15.0% |
| !!! | GTTTTTCTGATTTTTTTTAT+TGG | + | chr4_4:3171561-3171580 | Msa0664140:intron | 15.0% |
| !! | TTCAATATATGTTATAATAC+AGG | + | chr4_4:3172265-3172284 | Msa0664140:intron | 15.0% |
| !!! | TTTTTATTCAAATAAACTCA+TGG | + | chr4_4:3173090-3173109 | Msa0664140:intron | 15.0% |
| !!! | AAAAGTTCTAACAAAATATA+AGG | - | chr4_4:3173172-3173191 | None:intergenic | 15.0% |
| !!! | ATAAGAATATTTTCATTTTG+AGG | - | chr4_4:3173226-3173245 | None:intergenic | 15.0% |
| !!! | TGATTTTTTATGATTTGTTA+TGG | + | chr4_4:3174092-3174111 | Msa0664140:intron | 15.0% |
| !!! | TCATATTTTAACAAAAAGAT+AGG | - | chr4_4:3174255-3174274 | None:intergenic | 15.0% |
| !!! | TCTTTTTGTTAAAATATGAT+TGG | + | chr4_4:3174256-3174275 | Msa0664140:intron | 15.0% |
| !! | TCAAATGAAAATATTGATAA+TGG | + | chr4_4:3174501-3174520 | Msa0664140:intron | 15.0% |
| !!! | CAAATGAAAATATTGATAAT+GGG | + | chr4_4:3174502-3174521 | Msa0664140:intron | 15.0% |
| !!! | TATGTGTTATTATTTTTCAA+TGG | + | chr4_4:3175152-3175171 | Msa0664140:CDS | 15.0% |
| !!! | TGAATTTATGTTTTTACGAT+AGG | + | chr4_4:3170309-3170328 | Msa0664140:intron | 20.0% |
| !! | ATTATCTTTCAGTTGAATAT+TGG | + | chr4_4:3170498-3170517 | Msa0664140:intron | 20.0% |
| !! | ATAATCTTAATTGCTTCAAA+AGG | - | chr4_4:3170927-3170946 | None:intergenic | 20.0% |
| !!! | CATATTAACACAGAATTTTT+AGG | - | chr4_4:3171041-3171060 | None:intergenic | 20.0% |
| !!! | AGGAAATTTTGACTTATTAT+CGG | + | chr4_4:3171354-3171373 | Msa0664140:CDS | 20.0% |
| !!! | TATCTTATTGATTTAGACTT+TGG | + | chr4_4:3171476-3171495 | Msa0664140:intron | 20.0% |
| !! | TAGAATTTCTTTAATTGAGA+AGG | + | chr4_4:3171636-3171655 | Msa0664140:intron | 20.0% |
| !! | AGAATTTCTTTAATTGAGAA+GGG | + | chr4_4:3171637-3171656 | Msa0664140:intron | 20.0% |
| !!! | ATGTTTATTTCTACATTACA+AGG | - | chr4_4:3171978-3171997 | None:intergenic | 20.0% |
| !! | TATTGATCACATTCATAAAA+CGG | + | chr4_4:3172307-3172326 | Msa0664140:CDS | 20.0% |
| !! | ATAGATTATTTATACCTTGA+AGG | - | chr4_4:3172899-3172918 | None:intergenic | 20.0% |
| !!! | ATTCAGAAACCAAATATTTT+CGG | - | chr4_4:3173067-3173086 | None:intergenic | 20.0% |
| !!! | GAACTTTTAGATATTGATAT+TGG | + | chr4_4:3173184-3173203 | Msa0664140:intron | 20.0% |
| !! | TTTGTTAAAATATGATTGGA+TGG | + | chr4_4:3174260-3174279 | Msa0664140:intron | 20.0% |
| !!! | ACTATTTCGTTTGAAATAAT+AGG | - | chr4_4:3174842-3174861 | None:intergenic | 20.0% |
| !! | GACATCAAATAAATTAAAAC+TGG | - | chr4_4:3175710-3175729 | None:intergenic | 20.0% |
| ! | ATGATTATGCGTGTAATTAT+AGG | + | chr4_4:3170706-3170725 | Msa0664140:intron | 25.0% |
| ! | AATTAAGATTATCAACTTGC+CGG | + | chr4_4:3170935-3170954 | Msa0664140:CDS | 25.0% |
| !!! | GGAAATTTTGACTTATTATC+GGG | + | chr4_4:3171355-3171374 | Msa0664140:CDS | 25.0% |
| !!! | GAAATTTTGACTTATTATCG+GGG | + | chr4_4:3171356-3171375 | Msa0664140:CDS | 25.0% |
| ! | CAATTATTATGTAATGGTAG+AGG | + | chr4_4:3171593-3171612 | Msa0664140:intron | 25.0% |
| ! | AAGAAATTCTACAACACTAT+AGG | - | chr4_4:3171627-3171646 | None:intergenic | 25.0% |
| ! | TATCTATCTATCTATCTATG+CGG | - | chr4_4:3171859-3171878 | None:intergenic | 25.0% |
| !! | TAGATAGATAATCTTTGAAG+AGG | + | chr4_4:3171873-3171892 | Msa0664140:intron | 25.0% |
| ! | TGCACATTCAGAAAAATATA+AGG | - | chr4_4:3172147-3172166 | None:intergenic | 25.0% |
| ! | ATTGATCACATTCATAAAAC+GGG | + | chr4_4:3172308-3172327 | Msa0664140:CDS | 25.0% |
| ! | AAATTCAGATTTATCTTGAC+TGG | - | chr4_4:3172667-3172686 | None:intergenic | 25.0% |
| !!! | TGGCTTTATATTCCATAAAT+GGG | - | chr4_4:3172931-3172950 | None:intergenic | 25.0% |
| !!! | TTGGCTTTATATTCCATAAA+TGG | - | chr4_4:3172932-3172951 | None:intergenic | 25.0% |
| ! | TATGGAATATAAAGCCAATT+TGG | + | chr4_4:3172934-3172953 | Msa0664140:intron | 25.0% |
| ! | ATGGAATATAAAGCCAATTT+GGG | + | chr4_4:3172935-3172954 | Msa0664140:intron | 25.0% |
| !! | ACTTTTCTCAATTCTATTGT+TGG | - | chr4_4:3173040-3173059 | None:intergenic | 25.0% |
| !!! | TAACAGTTGATTTGAACTTT+GGG | - | chr4_4:3173708-3173727 | None:intergenic | 25.0% |
| !!! | AAAGAAGTTTTGAATCTTTC+TGG | + | chr4_4:3173823-3173842 | Msa0664140:CDS | 25.0% |
| ! | TAAAAAGGAAAGAAAAAGCA+GGG | - | chr4_4:3173956-3173975 | None:intergenic | 25.0% |
| ! | AGCTATTCAAGAATGTAAAA+AGG | - | chr4_4:3173971-3173990 | None:intergenic | 25.0% |
| !! | AAAAAAAACCGAGTGTATTT+TGG | + | chr4_4:3174190-3174209 | Msa0664140:intron | 25.0% |
| !! | AAAAAAACCGAGTGTATTTT+GGG | + | chr4_4:3174191-3174210 | Msa0664140:intron | 25.0% |
| !!! | TATTTTGGGCTAGTTTTTTT+AGG | + | chr4_4:3174205-3174224 | Msa0664140:intron | 25.0% |
| !! | AAAAGATAGGCCATATTTTT+GGG | - | chr4_4:3174242-3174261 | None:intergenic | 25.0% |
| !! | AAAAAGATAGGCCATATTTT+TGG | - | chr4_4:3174243-3174262 | None:intergenic | 25.0% |
| !! | AAAAAAAACCGAGTGTATTT+TGG | + | chr4_4:3174190-3174209 | Msa0664140:intron | 25.0% |
| !! | AAAAAAACCGAGTGTATTTT+GGG | + | chr4_4:3174191-3174210 | Msa0664140:intron | 25.0% |
| !!! | TATTTTGGGCTAGTTTTTTT+AGG | + | chr4_4:3174205-3174224 | Msa0664140:intron | 25.0% |
| ! | ATTGAATTCCTTATCCATTA+CGG | + | chr4_4:3174704-3174723 | Msa0664140:intron | 25.0% |
| !!! | ATTTTTAGAACTATACCTCT+TGG | + | chr4_4:3174777-3174796 | Msa0664140:intron | 25.0% |
| ! | TAACACATACTGATAAGAAA+AGG | - | chr4_4:3175141-3175160 | None:intergenic | 25.0% |
| ! | TCAAGGTAATAAACTAAAAC+TGG | - | chr4_4:3175541-3175560 | None:intergenic | 25.0% |
| ! | GCTTATTACACAGTTTATAT+CGG | + | chr4_4:3175891-3175910 | Msa0664140:three_prime_UTR | 25.0% |
| ATCTTTCAGTTGAATATTGG+TGG | + | chr4_4:3170501-3170520 | Msa0664140:intron | 30.0% | |
| TATAGGAAGATTGTGTATTG+AGG | + | chr4_4:3170723-3170742 | Msa0664140:intron | 30.0% | |
| !! | ATTTGTGTTAAGGTATTGAG+AGG | + | chr4_4:3170802-3170821 | Msa0664140:intron | 30.0% |
| !! | CTGTGTAGCTTAAAAGTATT+AGG | - | chr4_4:3170996-3171015 | None:intergenic | 30.0% |
| ! | CTAATACTTTTAAGCTACAC+AGG | + | chr4_4:3170994-3171013 | Msa0664140:CDS | 30.0% |
| TCAAGAGAGTTGTGTATTAT+AGG | + | chr4_4:3171098-3171117 | Msa0664140:intron | 30.0% | |
| !!! | TTTTTTTTTATACCGTGGAG+TGG | + | chr4_4:3171265-3171284 | Msa0664140:intron | 30.0% |
| !! | CTTATTGATTTAGACTTTGG+TGG | + | chr4_4:3171479-3171498 | Msa0664140:intron | 30.0% |
| ATGTTGACGTTTCATTAACT+GGG | + | chr4_4:3171682-3171701 | Msa0664140:intron | 30.0% | |
| AAAAGCGATACACTAATTCA+TGG | + | chr4_4:3171746-3171765 | Msa0664140:intron | 30.0% | |
| ! | ATAGATAATCTTTGAAGAGG+TGG | + | chr4_4:3171876-3171895 | Msa0664140:intron | 30.0% |
| ! | TAGATAATCTTTGAAGAGGT+GGG | + | chr4_4:3171877-3171896 | Msa0664140:intron | 30.0% |
| AACAGTATCAAAGTTGAACT+CGG | - | chr4_4:3171911-3171930 | None:intergenic | 30.0% | |
| ! | ACTGCAGTACTTTTATGATA+TGG | - | chr4_4:3171939-3171958 | None:intergenic | 30.0% |
| AGTACTGCAGTAATACAAAT+TGG | + | chr4_4:3171948-3171967 | Msa0664140:intron | 30.0% | |
| ATATAAGGACAACAAATGCT+AGG | - | chr4_4:3172132-3172151 | None:intergenic | 30.0% | |
| ! | TTAAGAAAGGTTCTTCCTTT+TGG | + | chr4_4:3172226-3172245 | Msa0664140:intron | 30.0% |
| TAAGCACATTAGAAACCAAA+AGG | - | chr4_4:3172244-3172263 | None:intergenic | 30.0% | |
| !! | TATAATACAGGTTAGCTTCA+AGG | + | chr4_4:3172277-3172296 | Msa0664140:intron | 30.0% |
| TTGATCACATTCATAAAACG+GGG | + | chr4_4:3172309-3172328 | Msa0664140:CDS | 30.0% | |
| ! | TCATATCTCTCTCATTGTTT+TGG | - | chr4_4:3172361-3172380 | None:intergenic | 30.0% |
| AAACAATGAGAGAGATATGA+AGG | + | chr4_4:3172361-3172380 | Msa0664140:CDS | 30.0% | |
| CAAGTTATAGATCGTAATGT+TGG | + | chr4_4:3172413-3172432 | Msa0664140:CDS | 30.0% | |
| ! | ACATGTATATCTCAGCTTTT+AGG | - | chr4_4:3172490-3172509 | None:intergenic | 30.0% |
| TTTATCTTGACTGGAAATCA+AGG | - | chr4_4:3172658-3172677 | None:intergenic | 30.0% | |
| TTCAACAACAATTACATAGC+TGG | - | chr4_4:3172707-3172726 | None:intergenic | 30.0% | |
| !! | GACTTTATTTGCTGTTTGTA+TGG | + | chr4_4:3172757-3172776 | Msa0664140:CDS | 30.0% |
| GGAATTAATATCTTCTTGTC+TGG | + | chr4_4:3172829-3172848 | Msa0664140:CDS | 30.0% | |
| TTGTTCCAACAGAAAATCTT+AGG | + | chr4_4:3172854-3172873 | Msa0664140:CDS | 30.0% | |
| CAACAGAAAATCTTAGGTTT+CGG | + | chr4_4:3172860-3172879 | Msa0664140:CDS | 30.0% | |
| AACAGAAAATCTTAGGTTTC+GGG | + | chr4_4:3172861-3172880 | Msa0664140:CDS | 30.0% | |
| CTTTATATTCCATAAATGGG+AGG | - | chr4_4:3172928-3172947 | None:intergenic | 30.0% | |
| TCAATCAATCTCAGTATTGT+AGG | - | chr4_4:3172997-3173016 | None:intergenic | 30.0% | |
| ! | AAAGTAGTGCCGAAAATATT+TGG | + | chr4_4:3173055-3173074 | Msa0664140:intron | 30.0% |
| TATAAATGATGCATCGCAAA+AGG | - | chr4_4:3173125-3173144 | None:intergenic | 30.0% | |
| ACTAAAAGAATACCAGCATA+CGG | - | chr4_4:3173525-3173544 | None:intergenic | 30.0% | |
| AATGAACCAACCTGAATAAA+AGG | - | chr4_4:3173610-3173629 | None:intergenic | 30.0% | |
| TTGTGTGAAATATTGAACTC+AGG | - | chr4_4:3173670-3173689 | None:intergenic | 30.0% | |
| !! | CTAACAGTTGATTTGAACTT+TGG | - | chr4_4:3173709-3173728 | None:intergenic | 30.0% |
| GATGAATTCTTTCATGTAAC+AGG | - | chr4_4:3173735-3173754 | None:intergenic | 30.0% | |
| ATCACATCTGATATAAACTG+GGG | - | chr4_4:3173772-3173791 | None:intergenic | 30.0% | |
| CATCACATCTGATATAAACT+GGG | - | chr4_4:3173773-3173792 | None:intergenic | 30.0% | |
| TCATCACATCTGATATAAAC+TGG | - | chr4_4:3173774-3173793 | None:intergenic | 30.0% | |
| GTAAAAAGGAAAGAAAAAGC+AGG | - | chr4_4:3173957-3173976 | None:intergenic | 30.0% | |
| TTTAGAAGATGACAAGATCA+AGG | + | chr4_4:3174048-3174067 | Msa0664140:intron | 30.0% | |
| TTAGAAGATGACAAGATCAA+GGG | + | chr4_4:3174049-3174068 | Msa0664140:intron | 30.0% | |
| !! | CCGATATAGACAATTTTAAC+CGG | - | chr4_4:3174129-3174148 | None:intergenic | 30.0% |
| CCGGTTAAAATTGTCTATAT+CGG | + | chr4_4:3174126-3174145 | Msa0664140:intron | 30.0% | |
| !!! | CTTTTTTATATGGGCCAAAT+GGG | + | chr4_4:3174156-3174175 | Msa0664140:intron | 30.0% |
| !! | TGAAAATATTGATAATGGGC+CGG | + | chr4_4:3174506-3174525 | Msa0664140:intron | 30.0% |
| ! | CTACTTCCATGTCAATTTTT+CGG | + | chr4_4:3174636-3174655 | Msa0664140:intron | 30.0% |
| TGACAGAGTTATTGTTTATG+AGG | + | chr4_4:3175057-3175076 | Msa0664140:CDS | 30.0% | |
| GACAGAGTTATTGTTTATGA+GGG | + | chr4_4:3175058-3175077 | Msa0664140:CDS | 30.0% | |
| ! | AAAATTATGTTTTGCTCTCG+TGG | + | chr4_4:3175222-3175241 | Msa0664140:intron | 30.0% |
| !!! | GTTTATTTTTGCATTGCTCT+TGG | + | chr4_4:3175423-3175442 | Msa0664140:intron | 30.0% |
| ! | AAATTGTTGAGTTGTTGCAT+TGG | - | chr4_4:3175513-3175532 | None:intergenic | 30.0% |
| AATGCAACAACTCAACAATT+TGG | + | chr4_4:3175512-3175531 | Msa0664140:CDS | 30.0% | |
| ATGCAACAACTCAACAATTT+GGG | + | chr4_4:3175513-3175532 | Msa0664140:CDS | 30.0% | |
| TTTGCATTTACTATTGCTCT+TGG | + | chr4_4:3175589-3175608 | Msa0664140:intron | 30.0% | |
| AAATTGTTGAGATGTTGCAT+TGG | - | chr4_4:3175680-3175699 | None:intergenic | 30.0% | |
| TCTATATCCATTGAGAAAGA+TGG | - | chr4_4:3175758-3175777 | None:intergenic | 30.0% | |
| ATGGCGATAAACTTAATATG+TGG | - | chr4_4:3175958-3175977 | None:intergenic | 30.0% | |
| ATAAATTATGAGAGCTGAGA+TGG | - | chr4_4:3175977-3175996 | None:intergenic | 30.0% | |
| AACACAATCAAAAAGCCGAT+CGG | - | chr4_4:3170261-3170280 | None:intergenic | 35.0% | |
| ! | TCAGTTGAATATTGGTGGTT+TGG | + | chr4_4:3170506-3170525 | Msa0664140:intron | 35.0% |
| ! | CAGTTGAATATTGGTGGTTT+GGG | + | chr4_4:3170507-3170526 | Msa0664140:intron | 35.0% |
| ! | AGTTGAATATTGGTGGTTTG+GGG | + | chr4_4:3170508-3170527 | Msa0664140:intron | 35.0% |
| AACAAAACACCGAATCATAC+CGG | - | chr4_4:3170626-3170645 | None:intergenic | 35.0% | |
| TGGATGTGGTATTTGTGTTA+AGG | + | chr4_4:3170792-3170811 | Msa0664140:CDS | 35.0% | |
| ! | ATGATTTTGCGACGATAATC+TGG | + | chr4_4:3170858-3170877 | Msa0664140:intron | 35.0% |
| ! | TGATTTTGCGACGATAATCT+GGG | + | chr4_4:3170859-3170878 | Msa0664140:intron | 35.0% |
| AAAGACACCACTCATAGATA+TGG | + | chr4_4:3170969-3170988 | Msa0664140:CDS | 35.0% | |
| ATTAGGACCATATCTATGAG+TGG | - | chr4_4:3170979-3170998 | None:intergenic | 35.0% | |
| TTTAGGTAACCACAGCTAAA+AGG | - | chr4_4:3171024-3171043 | None:intergenic | 35.0% | |
| AGTTGTGTATTATAGGTTGC+CGG | + | chr4_4:3171105-3171124 | Msa0664140:intron | 35.0% | |
| TTGGTTGGGAAAAATGGAAT+TGG | + | chr4_4:3171154-3171173 | Msa0664140:CDS | 35.0% | |
| TGGTTGGGAAAAATGGAATT+GGG | + | chr4_4:3171155-3171174 | Msa0664140:CDS | 35.0% | |
| CTTTCCAGCCAAAATTCTAA+GGG | - | chr4_4:3171191-3171210 | None:intergenic | 35.0% | |
| ACTTTCCAGCCAAAATTCTA+AGG | - | chr4_4:3171192-3171211 | None:intergenic | 35.0% | |
| !!! | TAGAATTTTGGCTGGAAAGT+TGG | + | chr4_4:3171192-3171211 | Msa0664140:CDS | 35.0% |
| CATGTTGACGTTTCATTAAC+TGG | + | chr4_4:3171681-3171700 | Msa0664140:intron | 35.0% | |
| ATGTTGACATTGACATTAGC+TGG | + | chr4_4:3171775-3171794 | Msa0664140:intron | 35.0% | |
| TGTTGACATTGACATTAGCT+GGG | + | chr4_4:3171776-3171795 | Msa0664140:intron | 35.0% | |
| ! | AGATAATCTTTGAAGAGGTG+GGG | + | chr4_4:3171878-3171897 | Msa0664140:intron | 35.0% |
| GATAGTGTGACACTTAAGAA+AGG | + | chr4_4:3172213-3172232 | Msa0664140:intron | 35.0% | |
| !! | GTAATGTTGGTGATCTTTCA+GGG | + | chr4_4:3172426-3172445 | Msa0664140:CDS | 35.0% |
| !! | TAATGTTGGTGATCTTTCAG+GGG | + | chr4_4:3172427-3172446 | Msa0664140:CDS | 35.0% |
| !! | GTATATCTCAGCTTTTAGGA+GGG | - | chr4_4:3172486-3172505 | None:intergenic | 35.0% |
| ! | TGTATATCTCAGCTTTTAGG+AGG | - | chr4_4:3172487-3172506 | None:intergenic | 35.0% |
| CTCACATCAAGATAACTAGA+AGG | - | chr4_4:3172521-3172540 | None:intergenic | 35.0% | |
| TATTATGCCTTAGCAATGAC+CGG | - | chr4_4:3172571-3172590 | None:intergenic | 35.0% | |
| ! | CGAAACCTAAGATTTTCTGT+TGG | - | chr4_4:3172862-3172881 | None:intergenic | 35.0% |
| ATATTCCATAAATGGGAGGT+AGG | - | chr4_4:3172924-3172943 | None:intergenic | 35.0% | |
| CAATACTGAGATTGATTGAG+TGG | + | chr4_4:3172998-3173017 | Msa0664140:intron | 35.0% | |
| CTAGACACAACATTAAAGCA+GGG | - | chr4_4:3173329-3173348 | None:intergenic | 35.0% | |
| TGTAGTTGGAGGAGAATTTA+CGG | + | chr4_4:3173444-3173463 | Msa0664140:CDS | 35.0% | |
| ! | TCTCAGATTGTTGTTATGCT+TGG | + | chr4_4:3173469-3173488 | Msa0664140:CDS | 35.0% |
| ! | TTGTTATGCTTGGTGAGAAT+GGG | + | chr4_4:3173479-3173498 | Msa0664140:CDS | 35.0% |
| TCATTGAAACCTGACACTAT+AGG | + | chr4_4:3173625-3173644 | Msa0664140:CDS | 35.0% | |
| ! | AACTTTGGGTTAATTGTCTG+AGG | - | chr4_4:3173694-3173713 | None:intergenic | 35.0% |
| !!! | GAAGTTTTGAATCTTTCTGG+TGG | + | chr4_4:3173826-3173845 | Msa0664140:CDS | 35.0% |
| GTTTCCTTATGTCTTTGTCT+TGG | + | chr4_4:3173862-3173881 | Msa0664140:CDS | 35.0% | |
| CTTTCCAAGACAAAGACATA+AGG | - | chr4_4:3173869-3173888 | None:intergenic | 35.0% | |
| CTTATGTCTTTGTCTTGGAA+AGG | + | chr4_4:3173867-3173886 | Msa0664140:CDS | 35.0% | |
| ! | GCAATCTTATGCAGTTTTCA+AGG | - | chr4_4:3173908-3173927 | None:intergenic | 35.0% |
| TTCATAGTTTCCTTTATGCC+AGG | + | chr4_4:3173990-3174009 | Msa0664140:intron | 35.0% | |
| TAAAATTGTCTATATCGGCC+CGG | + | chr4_4:3174131-3174150 | Msa0664140:intron | 35.0% | |
| CCATTTGGCCCATATAAAAA+AGG | - | chr4_4:3174158-3174177 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTATATGGGCCAAA+TGG | + | chr4_4:3174155-3174174 | Msa0664140:intron | 35.0% |
| AAACTAGCCCAAAATACACT+CGG | - | chr4_4:3174201-3174220 | None:intergenic | 35.0% | |
| AAACTAGCCCAAAATACACT+CGG | - | chr4_4:3174201-3174220 | None:intergenic | 35.0% | |
| GAAGTAGAGCTGTCAAAAAT+GGG | - | chr4_4:3174623-3174642 | None:intergenic | 35.0% | |
| GTGTTTCCGAAAAATTGACA+TGG | - | chr4_4:3174645-3174664 | None:intergenic | 35.0% | |
| ! | ATCTATTTGTGTTGACGTCA+TGG | + | chr4_4:3174750-3174769 | Msa0664140:intron | 35.0% |
| TCTATCAGATAAATGTCTGC+AGG | - | chr4_4:3174908-3174927 | None:intergenic | 35.0% | |
| TTGCTGCAAAAGTTATCAAG+AGG | + | chr4_4:3174966-3174985 | Msa0664140:CDS | 35.0% | |
| TTTGCAGTACAGTCAATTGA+AGG | - | chr4_4:3175088-3175107 | None:intergenic | 35.0% | |
| !! | AACCAAGTTTGTTGATCCTT+GGG | - | chr4_4:3175333-3175352 | None:intergenic | 35.0% |
| ! | TTACCTTGATGACTAAGTTC+AGG | + | chr4_4:3175393-3175412 | Msa0664140:CDS | 35.0% |
| AAACCTGAACTTAGTCATCA+AGG | - | chr4_4:3175399-3175418 | None:intergenic | 35.0% | |
| !! | CTTGGAATACTTTGCTTTTG+CGG | + | chr4_4:3175441-3175460 | Msa0664140:intron | 35.0% |
| TGCAACAATAGAAACAGAGT+CGG | - | chr4_4:3175477-3175496 | None:intergenic | 35.0% | |
| GCAACAATAGAAAACAGAGT+CGG | - | chr4_4:3175643-3175662 | None:intergenic | 35.0% | |
| AGCAACATCGCTAAGTATTA+CGG | - | chr4_4:3175834-3175853 | None:intergenic | 35.0% | |
| TGTGTAATAAGCAGATTCAC+TGG | - | chr4_4:3175883-3175902 | None:intergenic | 35.0% | |
| TACACAGTTTATATCGGTCA+TGG | + | chr4_4:3175897-3175916 | Msa0664140:three_prime_UTR | 35.0% | |
| ACACAATCAAAAAGCCGATC+GGG | - | chr4_4:3170260-3170279 | None:intergenic | 40.0% | |
| AGATGCAAGCCAAAAAAGTG+TGG | + | chr4_4:3170565-3170584 | Msa0664140:CDS | 40.0% | |
| TCGTCATAACCGGTATGATT+CGG | + | chr4_4:3170614-3170633 | Msa0664140:intron | 40.0% | |
| TATCAACTTGCCGGAGAATT+TGG | + | chr4_4:3170944-3170963 | Msa0664140:CDS | 40.0% | |
| GTGTCTTTGTCCAAATTCTC+CGG | - | chr4_4:3170957-3170976 | None:intergenic | 40.0% | |
| !! | CTTGGTTTGGTTGGGAAAAA+TGG | + | chr4_4:3171148-3171167 | Msa0664140:CDS | 40.0% |
| TGGAAAGTTGGAGCCAAATT+TGG | + | chr4_4:3171204-3171223 | Msa0664140:CDS | 40.0% | |
| GGAAAGTTGGAGCCAAATTT+GGG | + | chr4_4:3171205-3171224 | Msa0664140:CDS | 40.0% | |
| ACAGTGAAACGACCCAAATT+TGG | - | chr4_4:3171220-3171239 | None:intergenic | 40.0% | |
| CTTTCGAGATGAGAGTTTGA+AGG | + | chr4_4:3171406-3171425 | Msa0664140:CDS | 40.0% | |
| GTTGACATTGACATTAGCTG+GGG | + | chr4_4:3171777-3171796 | Msa0664140:intron | 40.0% | |
| GGTATGTTGTGGTTGTGATT+GGG | + | chr4_4:3171798-3171817 | Msa0664140:intron | 40.0% | |
| GATTGGGATTTGTGAGTGTT+TGG | + | chr4_4:3171814-3171833 | Msa0664140:intron | 40.0% | |
| ACATTCATAAAACGGGGCAA+GGG | + | chr4_4:3172315-3172334 | Msa0664140:CDS | 40.0% | |
| !! | CGTAATGTTGGTGATCTTTC+AGG | + | chr4_4:3172425-3172444 | Msa0664140:CDS | 40.0% |
| !! | AATGTTGGTGATCTTTCAGG+GGG | + | chr4_4:3172428-3172447 | Msa0664140:CDS | 40.0% |
| GTTATCTTGATGTGAGACAG+AGG | + | chr4_4:3172525-3172544 | Msa0664140:CDS | 40.0% | |
| GGTCATTGCTAAGGCATAAT+AGG | + | chr4_4:3172570-3172589 | Msa0664140:CDS | 40.0% | |
| TGAACACGATCTTAGTGTCT+TGG | + | chr4_4:3172723-3172742 | Msa0664140:CDS | 40.0% | |
| ATTCCTTCTCTGACTGAGAA+AGG | - | chr4_4:3172814-3172833 | None:intergenic | 40.0% | |
| TATCTCCTACCTCCCATTTA+TGG | + | chr4_4:3172916-3172935 | Msa0664140:intron | 40.0% | |
| CCTAGACACAACATTAAAGC+AGG | - | chr4_4:3173330-3173349 | None:intergenic | 40.0% | |
| CCTGCTTTAATGTTGTGTCT+AGG | + | chr4_4:3173327-3173346 | Msa0664140:intron | 40.0% | |
| !! | CTTGAGTTTTGGTCATGGTT+GGG | - | chr4_4:3173408-3173427 | None:intergenic | 40.0% |
| ! | GTTGTTATGCTTGGTGAGAA+TGG | + | chr4_4:3173478-3173497 | Msa0664140:CDS | 40.0% |
| ! | TTCACCACCTCCTTTTATTC+AGG | + | chr4_4:3173597-3173616 | Msa0664140:intron | 40.0% |
| GAACCAACCTGAATAAAAGG+AGG | - | chr4_4:3173607-3173626 | None:intergenic | 40.0% | |
| TTGAAACCTGACACTATAGG+TGG | + | chr4_4:3173628-3173647 | Msa0664140:CDS | 40.0% | |
| ATCAGCTGTTCGATAAGTAG+TGG | - | chr4_4:3173799-3173818 | None:intergenic | 40.0% | |
| ACTACTTATCGAACAGCTGA+TGG | + | chr4_4:3173798-3173817 | Msa0664140:CDS | 40.0% | |
| TAAAAGACCAAACTTCGACC+TGG | - | chr4_4:3174011-3174030 | None:intergenic | 40.0% | |
| TGTTATGGATGTGCATCAAC+CGG | + | chr4_4:3174107-3174126 | Msa0664140:intron | 40.0% | |
| TGGCCCATATAAAAAAGGAC+CGG | - | chr4_4:3174153-3174172 | None:intergenic | 40.0% | |
| ! | TTTTTGCCCAAAAGCCCATT+TGG | - | chr4_4:3174173-3174192 | None:intergenic | 40.0% |
| !!! | ATAGGCCATATTTTTGGGCT+GGG | - | chr4_4:3174237-3174256 | None:intergenic | 40.0% |
| !!! | TTTTTTTGCCCAAGCCCATT+TGG | - | chr4_4:3174553-3174572 | None:intergenic | 40.0% |
| GGAAGTAGAGCTGTCAAAAA+TGG | - | chr4_4:3174624-3174643 | None:intergenic | 40.0% | |
| !! | TCGTAGAACCGTAATGGATA+AGG | - | chr4_4:3174715-3174734 | None:intergenic | 40.0% |
| CAACACAAATAGATGTCTGC+AGG | - | chr4_4:3174744-3174763 | None:intergenic | 40.0% | |
| TGCAGCAATAATACGCTGTT+CGG | - | chr4_4:3174954-3174973 | None:intergenic | 40.0% | |
| TGCAAAGAAAACAGCCTTTG+TGG | + | chr4_4:3175000-3175019 | Msa0664140:CDS | 40.0% | |
| GAAATCATGCTCAACCACAA+AGG | - | chr4_4:3175017-3175036 | None:intergenic | 40.0% | |
| GGTTGAGCATGATTTCATCA+TGG | + | chr4_4:3175021-3175040 | Msa0664140:CDS | 40.0% | |
| !! | GAACCAAGTTTGTTGATCCT+TGG | - | chr4_4:3175334-3175353 | None:intergenic | 40.0% |
| CAACAAACTTGGTTCAACCA+AGG | + | chr4_4:3175339-3175358 | Msa0664140:CDS | 40.0% | |
| ! | AAGCTTTTGCTCTCTATCCT+TGG | - | chr4_4:3175359-3175378 | None:intergenic | 40.0% |
| ! | ATAGAGAGCAAAAGCTTGCT+GGG | + | chr4_4:3175362-3175381 | Msa0664140:CDS | 40.0% |
| ! | TTACCTTGATGACTGAGTTC+AGG | + | chr4_4:3175552-3175571 | Msa0664140:intron | 40.0% |
| AAACCTGAACTCAGTCATCA+AGG | - | chr4_4:3175558-3175577 | None:intergenic | 40.0% | |
| CTCTTGGAACACTTTGCTTT+CGG | + | chr4_4:3175605-3175624 | Msa0664140:intron | 40.0% | |
| TCTTGGAACACTTTGCTTTC+GGG | + | chr4_4:3175606-3175625 | Msa0664140:intron | 40.0% | |
| ATGGCTTCAACAGGGAAAAA+AGG | - | chr4_4:3175739-3175758 | None:intergenic | 40.0% | |
| TGAGAAAGATGGCTTCAACA+GGG | - | chr4_4:3175747-3175766 | None:intergenic | 40.0% | |
| TTGAGAAAGATGGCTTCAAC+AGG | - | chr4_4:3175748-3175767 | None:intergenic | 40.0% | |
| GTTGAAGCCATCTTTCTCAA+TGG | + | chr4_4:3175748-3175767 | Msa0664140:CDS | 40.0% | |
| ATACTTAGCGATGTTGCTCA+TGG | + | chr4_4:3175836-3175855 | Msa0664140:CDS | 40.0% | |
| !! | GGCCAGTTTTGGTATGATTT+CGG | + | chr4_4:3175857-3175876 | Msa0664140:CDS | 40.0% |
| GTGGCATCATTATTCAGTCA+AGG | - | chr4_4:3175939-3175958 | None:intergenic | 40.0% | |
| AGAGGACGGTGAAACTAGAA+AGG | - | chr4_4:3170212-3170231 | None:intergenic | 45.0% | |
| CACAATCAAAAAGCCGATCG+GGG | - | chr4_4:3170259-3170278 | None:intergenic | 45.0% | |
| ACGCGTATTGCCATTGTCAA+TGG | + | chr4_4:3170538-3170557 | Msa0664140:CDS | 45.0% | |
| GCATCTGTCTCCATTGACAA+TGG | - | chr4_4:3170551-3170570 | None:intergenic | 45.0% | |
| ! | CAAGCCAAAAAAGTGTGGAC+AGG | + | chr4_4:3170570-3170589 | Msa0664140:CDS | 45.0% |
| !!! | CACTCCTGTCCACACTTTTT+TGG | - | chr4_4:3170577-3170596 | None:intergenic | 45.0% |
| ! | TCATACCGGTTATGACGACA+GGG | - | chr4_4:3170612-3170631 | None:intergenic | 45.0% |
| ! | ATCATACCGGTTATGACGAC+AGG | - | chr4_4:3170613-3170632 | None:intergenic | 45.0% |
| GAAGATTGCTTACCTATCCG+AGG | + | chr4_4:3170759-3170778 | Msa0664140:CDS | 45.0% | |
| ACATCCAGTGCACAATTCCT+CGG | - | chr4_4:3170779-3170798 | None:intergenic | 45.0% | |
| !! | GGAAAGTGCTTGGTTTGGTT+GGG | + | chr4_4:3171140-3171159 | Msa0664140:CDS | 45.0% |
| ! | GTCCACTGCCCTTAGAATTT+TGG | + | chr4_4:3171180-3171199 | Msa0664140:CDS | 45.0% |
| ! | AGCCAAAATTCTAAGGGCAG+TGG | - | chr4_4:3171185-3171204 | None:intergenic | 45.0% |
| !! | ACTGCCCTTAGAATTTTGGC+TGG | + | chr4_4:3171184-3171203 | Msa0664140:CDS | 45.0% |
| AAACATGTCTGTCCACTCCA+CGG | - | chr4_4:3171280-3171299 | None:intergenic | 45.0% | |
| ! | ACTGCATTCACCTCTGCTTT+TGG | + | chr4_4:3171308-3171327 | Msa0664140:intron | 45.0% |
| GTTCTGCAAACCAAAAGCAG+AGG | - | chr4_4:3171321-3171340 | None:intergenic | 45.0% | |
| AAATTTCCTGCCAGTCAGGA+GGG | - | chr4_4:3171343-3171362 | None:intergenic | 45.0% | |
| AAAATTTCCTGCCAGTCAGG+AGG | - | chr4_4:3171344-3171363 | None:intergenic | 45.0% | |
| GTCAAAATTTCCTGCCAGTC+AGG | - | chr4_4:3171347-3171366 | None:intergenic | 45.0% | |
| ACATTAGCTGGGGTATGTTG+TGG | + | chr4_4:3171787-3171806 | Msa0664140:intron | 45.0% | |
| GGGTATGTTGTGGTTGTGAT+TGG | + | chr4_4:3171797-3171816 | Msa0664140:intron | 45.0% | |
| CACATTCATAAAACGGGGCA+AGG | + | chr4_4:3172314-3172333 | Msa0664140:CDS | 45.0% | |
| CAACAGCAATGGCAAACCTT+TGG | - | chr4_4:3172460-3172479 | None:intergenic | 45.0% | |
| TAGCAATGACCGGACAACTT+GGG | - | chr4_4:3172561-3172580 | None:intergenic | 45.0% | |
| TTAGCAATGACCGGACAACT+TGG | - | chr4_4:3172562-3172581 | None:intergenic | 45.0% | |
| AAGTTGTCCGGTCATTGCTA+AGG | + | chr4_4:3172561-3172580 | Msa0664140:CDS | 45.0% | |
| ! | TGCTGTTTGTATGGAACACC+TGG | + | chr4_4:3172766-3172785 | Msa0664140:CDS | 45.0% |
| TATGGAACACCTGGTGCATA+TGG | + | chr4_4:3172775-3172794 | Msa0664140:CDS | 45.0% | |
| CTTCCTTTCTCAGTCAGAGA+AGG | + | chr4_4:3172808-3172827 | Msa0664140:CDS | 45.0% | |
| GGATGACTCTCTTACCTTCA+AGG | + | chr4_4:3172882-3172901 | Msa0664140:CDS | 45.0% | |
| ATCAATCTCAGCGCCCAAAT+TGG | - | chr4_4:3172951-3172970 | None:intergenic | 45.0% | |
| TGAGCTTCAGCAGTTTCATG+TGG | - | chr4_4:3173364-3173383 | None:intergenic | 45.0% | |
| !! | CCTTGAGTTTTGGTCATGGT+TGG | - | chr4_4:3173409-3173428 | None:intergenic | 45.0% |
| CCAACCATGACCAAAACTCA+AGG | + | chr4_4:3173406-3173425 | Msa0664140:CDS | 45.0% | |
| !! | CTTGCCTTGAGTTTTGGTCA+TGG | - | chr4_4:3173413-3173432 | None:intergenic | 45.0% |
| ! | CCTGAACTTGCCTTGAGTTT+TGG | - | chr4_4:3173419-3173438 | None:intergenic | 45.0% |
| CCAAAACTCAAGGCAAGTTC+AGG | + | chr4_4:3173416-3173435 | Msa0664140:CDS | 45.0% | |
| AAGTTCAGGCTTCGTGTAGT+TGG | + | chr4_4:3173430-3173449 | Msa0664140:CDS | 45.0% | |
| ! | TATGCTTGGTGAGAATGGGA+CGG | + | chr4_4:3173483-3173502 | Msa0664140:CDS | 45.0% |
| GACAACATTCATCCGTATGC+TGG | + | chr4_4:3173510-3173529 | Msa0664140:CDS | 45.0% | |
| CCAACCTGAATAAAAGGAGG+TGG | - | chr4_4:3173604-3173623 | None:intergenic | 45.0% | |
| ! | CCACCTCCTTTTATTCAGGT+TGG | + | chr4_4:3173601-3173620 | Msa0664140:intron | 45.0% |
| TCAGATCCACCTATAGTGTC+AGG | - | chr4_4:3173637-3173656 | None:intergenic | 45.0% | |
| CACTATAGGTGGATCTGATG+TGG | + | chr4_4:3173639-3173658 | Msa0664140:CDS | 45.0% | |
| CAGGGCAGACACTAGAATTA+AGG | - | chr4_4:3173938-3173957 | None:intergenic | 45.0% | |
| CAAACTTCGACCTGGCATAA+AGG | - | chr4_4:3174003-3174022 | None:intergenic | 45.0% | |
| CTTTATGCCAGGTCGAAGTT+TGG | + | chr4_4:3174001-3174020 | Msa0664140:intron | 45.0% | |
| !!! | GGCCCGGTCCTTTTTTATAT+GGG | + | chr4_4:3174147-3174166 | Msa0664140:intron | 45.0% |
| GGCCCATATAAAAAAGGACC+GGG | - | chr4_4:3174152-3174171 | None:intergenic | 45.0% | |
| !! | ATATGGGCCAAATGGGCTTT+TGG | + | chr4_4:3174163-3174182 | Msa0664140:intron | 45.0% |
| !! | TATGGGCCAAATGGGCTTTT+GGG | + | chr4_4:3174164-3174183 | Msa0664140:intron | 45.0% |
| !!! | GGGCTAGTTTTTTTAGGTCC+CGG | + | chr4_4:3174211-3174230 | Msa0664140:intron | 45.0% |
| !!! | GATAGGCCATATTTTTGGGC+TGG | - | chr4_4:3174238-3174257 | None:intergenic | 45.0% |
| !!! | GGGCTAGTTTTTTTAGGTCC+CGG | + | chr4_4:3174211-3174230 | Msa0664140:intron | 45.0% |
| CTACTGTCGTAGAACCGTAA+TGG | - | chr4_4:3174721-3174740 | None:intergenic | 45.0% | |
| AAAGACACAACGAAGCCAAG+AGG | - | chr4_4:3174795-3174814 | None:intergenic | 45.0% | |
| TAAATGTCTGCAGGCTGTTG+TGG | - | chr4_4:3174899-3174918 | None:intergenic | 45.0% | |
| TCGGAATCAAGATGTGCACT+TGG | - | chr4_4:3174935-3174954 | None:intergenic | 45.0% | |
| ATCCAACTAATTTCCGCCCA+AGG | + | chr4_4:3175314-3175333 | Msa0664140:CDS | 45.0% | |
| ATCCTTGGGCGGAAATTAGT+TGG | - | chr4_4:3175319-3175338 | None:intergenic | 45.0% | |
| !! | CAAGTTTGTTGATCCTTGGG+CGG | - | chr4_4:3175330-3175349 | None:intergenic | 45.0% |
| GATAGAGAGCAAAAGCTTGC+TGG | + | chr4_4:3175361-3175380 | Msa0664140:CDS | 45.0% | |
| ! | TGTTGCATTGGCAAAAGAGC+AGG | - | chr4_4:3175501-3175520 | None:intergenic | 45.0% |
| CTTGGAACACTTTGCTTTCG+GGG | + | chr4_4:3175607-3175626 | Msa0664140:intron | 45.0% | |
| ! | TGTTGCATTGGCAAAAGAGC+AGG | - | chr4_4:3175501-3175520 | None:intergenic | 45.0% |
| GCTACATGCAGAGCATATGT+TGG | + | chr4_4:3175787-3175806 | Msa0664140:CDS | 45.0% | |
| CATGCAGAGCATATGTTGGT+TGG | + | chr4_4:3175791-3175810 | Msa0664140:CDS | 45.0% | |
| ! | ATGTTGCTCATGGCCAGTTT+TGG | + | chr4_4:3175846-3175865 | Msa0664140:CDS | 45.0% |
| GGCCGAAATCATACCAAAAC+TGG | - | chr4_4:3175862-3175881 | None:intergenic | 45.0% | |
| !! | GTATAAAAAAAAAAAAAAAA+AGG | - | chr4_4:3171258-3171277 | None:intergenic | 5.0% |
| !!! | TAATTTTTTTTTTTACAAAT+TGG | + | chr4_4:3171539-3171558 | Msa0664140:intron | 5.0% |
| !!! | TTCAATTATTTTAAAAATAA+TGG | - | chr4_4:3175180-3175199 | None:intergenic | 5.0% |
| ! | ACTAGAAAGGTGTGCCTTGC+CGG | - | chr4_4:3170199-3170218 | None:intergenic | 50.0% |
| CGGTGAATAGAGAGAGAGGA+CGG | - | chr4_4:3170226-3170245 | None:intergenic | 50.0% | |
| CTGTCGGTGAATAGAGAGAG+AGG | - | chr4_4:3170230-3170249 | None:intergenic | 50.0% | |
| CTCTCTCTCTATTCACCGAC+AGG | + | chr4_4:3170228-3170247 | Msa0664140:five_prime_UTR | 50.0% | |
| CAGTGCACAATTCCTCGGAT+AGG | - | chr4_4:3170774-3170793 | None:intergenic | 50.0% | |
| CTATCCGAGGAATTGTGCAC+TGG | + | chr4_4:3170772-3170791 | Msa0664140:CDS | 50.0% | |
| GAGGAATTGTGCACTGGATG+TGG | + | chr4_4:3170778-3170797 | Msa0664140:CDS | 50.0% | |
| !! | ATTATAGGTTGCCGGTTCCG+AGG | + | chr4_4:3171113-3171132 | Msa0664140:intron | 50.0% |
| ACCAAACCAAGCACTTTCCC+CGG | - | chr4_4:3171139-3171158 | None:intergenic | 50.0% | |
| !! | GGGAAAGTGCTTGGTTTGGT+TGG | + | chr4_4:3171139-3171158 | Msa0664140:CDS | 50.0% |
| GGAGTGGACAGACATGTTTG+AGG | + | chr4_4:3171281-3171300 | Msa0664140:intron | 50.0% | |
| TGAAAGCTGCCCAAGTTGTC+CGG | + | chr4_4:3172549-3172568 | Msa0664140:CDS | 50.0% | |
| GTTACGACTCCATATGCACC+AGG | - | chr4_4:3172787-3172806 | None:intergenic | 50.0% | |
| TTCAGGCTTCGTGTAGTTGG+AGG | + | chr4_4:3173433-3173452 | Msa0664140:CDS | 50.0% | |
| ! | ATGCTTGGTGAGAATGGGAC+GGG | + | chr4_4:3173484-3173503 | Msa0664140:CDS | 50.0% |
| !!! | CGGCCCGGTCCTTTTTTATA+TGG | + | chr4_4:3174146-3174165 | Msa0664140:intron | 50.0% |
| CTGTCAAAAATGGGCCAGCT+GGG | - | chr4_4:3174614-3174633 | None:intergenic | 50.0% | |
| CGCCCAAGGATCAACAAACT+TGG | + | chr4_4:3175328-3175347 | Msa0664140:CDS | 50.0% | |
| GCAATCGCAAGGAGAGTGGA+GGG | - | chr4_4:3170157-3170176 | None:intergenic | 55.0% | |
| CGTTGCCCTGTCGTCATAAC+CGG | + | chr4_4:3170604-3170623 | Msa0664140:CDS | 55.0% | |
| !! | ACAGGTGCGCCTTTTAGCTG+TGG | + | chr4_4:3171012-3171031 | Msa0664140:intron | 55.0% |
| GTTTGCAGAACCCTCCTGAC+TGG | + | chr4_4:3171330-3171349 | Msa0664140:intron | 55.0% | |
| TAAAACGGGGCAAGGGAACG+TGG | + | chr4_4:3172322-3172341 | Msa0664140:CDS | 55.0% | |
| AAAACGGGGCAAGGGAACGT+GGG | + | chr4_4:3172323-3172342 | Msa0664140:CDS | 55.0% | |
| TTTCAGGGGGTGAGCTCCAA+AGG | + | chr4_4:3172441-3172460 | Msa0664140:CDS | 55.0% | |
| TAGGAGGGCAGCAACAGCAA+TGG | - | chr4_4:3172471-3172490 | None:intergenic | 55.0% | |
| !! | GGGCGCTGAGATTGATTGAG+TGG | + | chr4_4:3172955-3172974 | Msa0664140:intron | 55.0% |
| !!! | CCATATTTTTGGGCTGGGCC+GGG | - | chr4_4:3174232-3174251 | None:intergenic | 55.0% |
| !!! | GCCATATTTTTGGGCTGGGC+CGG | - | chr4_4:3174233-3174252 | None:intergenic | 55.0% |
| GCTGTCAAAAATGGGCCAGC+TGG | - | chr4_4:3174615-3174634 | None:intergenic | 55.0% | |
| CGCAATCGCAAGGAGAGTGG+AGG | - | chr4_4:3170158-3170177 | None:intergenic | 60.0% | |
| ! | AAAGGTGTGCCTTGCCGGAC+GGG | - | chr4_4:3170194-3170213 | None:intergenic | 60.0% |
| ! | GAAAGGTGTGCCTTGCCGGA+CGG | - | chr4_4:3170195-3170214 | None:intergenic | 60.0% |
| !! | GCCGGGGAAAGTGCTTGGTT+TGG | + | chr4_4:3171135-3171154 | Msa0664140:CDS | 60.0% |
| AAACGGGGCAAGGGAACGTG+GGG | + | chr4_4:3172324-3172343 | Msa0664140:CDS | 60.0% | |
| CCCGGCCCAGCCCAAAAATA+TGG | + | chr4_4:3174229-3174248 | Msa0664140:intron | 60.0% | |
| CCCATTTGGCCTGGCTCATC+GGG | - | chr4_4:3174539-3174558 | None:intergenic | 60.0% | |
| CCCGATGAGCCAGGCCAAAT+GGG | + | chr4_4:3174536-3174555 | Msa0664140:intron | 60.0% | |
| GCCCATTTGGCCTGGCTCAT+CGG | - | chr4_4:3174540-3174559 | None:intergenic | 60.0% | |
| ! | TGAGCCAGGCCAAATGGGCT+TGG | + | chr4_4:3174541-3174560 | Msa0664140:intron | 60.0% |
| ! | GAGCCAGGCCAAATGGGCTT+GGG | + | chr4_4:3174542-3174561 | Msa0664140:intron | 60.0% |
| TTGCCCAAGCCCATTTGGCC+TGG | - | chr4_4:3174548-3174567 | None:intergenic | 60.0% | |
| !!! | TTTTTAGGTCCCGGCCCAGC+TGG | + | chr4_4:3174220-3174239 | Msa0664140:intron | 60.0% |
| AAAAATGGGCCAGCTGGGCC+GGG | - | chr4_4:3174609-3174628 | None:intergenic | 60.0% | |
| CAAAAATGGGCCAGCTGGGC+CGG | - | chr4_4:3174610-3174629 | None:intergenic | 60.0% | |
| CGGCGCAATCGCAAGGAGAG+TGG | - | chr4_4:3170161-3170180 | None:intergenic | 65.0% | |
| TGTGCCTTGCCGGACGGGAA+AGG | - | chr4_4:3170189-3170208 | None:intergenic | 65.0% | |
| CCGATCGGGGAGAGACCTGT+CGG | - | chr4_4:3170246-3170265 | None:intergenic | 65.0% | |
| CCGACAGGTCTCTCCCCGAT+CGG | + | chr4_4:3170243-3170262 | Msa0664140:intron | 65.0% | |
| !! | TAGGTTGCCGGTTCCGAGGC+CGG | + | chr4_4:3171117-3171136 | Msa0664140:intron | 65.0% |
| ACTTTCCCCGGCCTCGGAAC+CGG | - | chr4_4:3171127-3171146 | None:intergenic | 65.0% | |
| CCAAGCACTTTCCCCGGCCT+CGG | - | chr4_4:3171133-3171152 | None:intergenic | 65.0% | |
| GCAGAACCCTCCTGACTGGC+AGG | + | chr4_4:3171334-3171353 | Msa0664140:intron | 65.0% | |
| TGGCCTGGCTCATCGGGCTT+CGG | - | chr4_4:3174533-3174552 | None:intergenic | 65.0% | |
| GCCCGATGAGCCAGGCCAAA+TGG | + | chr4_4:3174535-3174554 | Msa0664140:intron | 65.0% | |
| GGTGCGACGGCGCAATCGCA+AGG | - | chr4_4:3170168-3170187 | None:intergenic | 70.0% | |
| GCCGTCGCACCTTTCCCGTC+CGG | + | chr4_4:3170177-3170196 | Msa0664140:five_prime_UTR | 70.0% | |
| ! | GCCGGACGGGAAAGGTGCGA+CGG | - | chr4_4:3170181-3170200 | None:intergenic | 70.0% |
| CGCACCTTTCCCGTCCGGCA+AGG | + | chr4_4:3170182-3170201 | Msa0664140:five_prime_UTR | 70.0% | |
| !! | AGGTTGCCGGTTCCGAGGCC+GGG | + | chr4_4:3171118-3171137 | Msa0664140:intron | 70.0% |
| !! | CCGAGGCCGGGGAAAGTGCT+TGG | + | chr4_4:3171130-3171149 | Msa0664140:CDS | 70.0% |
| TGGCTCATCGGGCTTCGGGC+CGG | - | chr4_4:3174528-3174547 | None:intergenic | 70.0% | |
| GGCCTGGCTCATCGGGCTTC+GGG | - | chr4_4:3174532-3174551 | None:intergenic | 70.0% | |
| !! | GGTTGCCGGTTCCGAGGCCG+GGG | + | chr4_4:3171119-3171138 | Msa0664140:intron | 75.0% |
| GGCCCGAAGCCCGATGAGCC+AGG | + | chr4_4:3174527-3174546 | Msa0664140:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3170131 | 3176021 | 3170131 | ID=Msa0664140;Name=Msa0664140 |
| chr4_4 | mRNA | 3170131 | 3176021 | 3170131 | ID=Msa0664140-mRNA-1;Parent=Msa0664140;Name=Msa0664140-mRNA-1;_AED=0.11;_eAED=0.12;_QI=144|0.84|0.85|1|0.69|0.64|14|135|700 |
| chr4_4 | exon | 3170131 | 3170249 | 3170131 | ID=Msa0664140-mRNA-1:exon:939;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3170510 | 3170625 | 3170510 | ID=Msa0664140-mRNA-1:exon:940;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3170728 | 3170813 | 3170728 | ID=Msa0664140-mRNA-1:exon:941;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3170918 | 3171015 | 3170918 | ID=Msa0664140-mRNA-1:exon:942;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3171120 | 3171237 | 3171120 | ID=Msa0664140-mRNA-1:exon:943;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3171338 | 3171427 | 3171338 | ID=Msa0664140-mRNA-1:exon:944;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3172287 | 3172591 | 3172287 | ID=Msa0664140-mRNA-1:exon:945;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3172708 | 3172903 | 3172708 | ID=Msa0664140-mRNA-1:exon:946;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3173349 | 3173531 | 3173349 | ID=Msa0664140-mRNA-1:exon:947;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3173619 | 3173888 | 3173619 | ID=Msa0664140-mRNA-1:exon:948;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3174905 | 3175173 | 3174905 | ID=Msa0664140-mRNA-1:exon:949;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3175289 | 3175414 | 3175289 | ID=Msa0664140-mRNA-1:exon:950;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3175498 | 3175546 | 3175498 | ID=Msa0664140-mRNA-1:exon:951;Parent=Msa0664140-mRNA-1 |
| chr4_4 | exon | 3175665 | 3176021 | 3175665 | ID=Msa0664140-mRNA-1:exon:952;Parent=Msa0664140-mRNA-1 |
| chr4_4 | five_prime_UTR | 3170131 | 3170249 | 3170131 | ID=Msa0664140-mRNA-1:five_prime_utr;Parent=Msa0664140-mRNA-1 |
| chr4_4 | five_prime_UTR | 3170510 | 3170534 | 3170510 | ID=Msa0664140-mRNA-1:five_prime_utr;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3170535 | 3170625 | 3170535 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3170728 | 3170813 | 3170728 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3170918 | 3171015 | 3170918 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3171120 | 3171237 | 3171120 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3171338 | 3171427 | 3171338 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3172287 | 3172591 | 3172287 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3172708 | 3172903 | 3172708 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3173349 | 3173531 | 3173349 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3173619 | 3173888 | 3173619 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3174905 | 3175173 | 3174905 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3175289 | 3175414 | 3175289 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3175498 | 3175546 | 3175498 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | CDS | 3175665 | 3175886 | 3175665 | ID=Msa0664140-mRNA-1:cds;Parent=Msa0664140-mRNA-1 |
| chr4_4 | three_prime_UTR | 3175887 | 3176021 | 3175887 | ID=Msa0664140-mRNA-1:three_prime_utr;Parent=Msa0664140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
