AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0978540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978540 MtrunA17_Chr6g0457461 84.181 177 10 1 1 159 1 177 1.43e-107 304
Msa0978540 MtrunA17_Chr6g0457471 82.222 180 11 2 1 159 1 180 9.94e-105 297
Msa0978540 MtrunA17_Chr7g0215381 73.256 172 24 3 9 159 11 181 2.70e-88 255
Msa0978540 MtrunA17_Chr7g0215351 73.837 172 23 3 9 159 11 181 3.11e-88 255
Msa0978540 MtrunA17_Chr7g0215421 73.256 172 24 3 9 159 11 181 5.74e-88 254
Msa0978540 MtrunA17_Chr7g0215361 73.684 171 23 3 10 159 12 181 7.31e-88 254
Msa0978540 MtrunA17_Chr7g0215431 72.515 171 25 3 10 159 12 181 1.25e-86 251
Msa0978540 MtrunA17_Chr4g0072241 45.161 155 66 2 23 158 15 169 4.20e-47 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978540 AT1G67090.1 66.279 172 40 1 6 159 7 178 8.13e-83 242
Msa0978540 AT5G38410.1 65.909 176 41 2 2 159 4 178 9.17e-83 242
Msa0978540 AT5G38430.1 65.909 176 41 2 2 159 4 178 1.30e-82 241
Msa0978540 AT5G38430.2 65.909 176 41 2 2 159 4 178 1.30e-82 241
Msa0978540 AT5G38410.3 64.088 181 41 2 2 159 4 183 5.67e-82 240
Msa0978540 AT5G38420.1 64.773 176 43 2 2 159 4 178 4.43e-81 237
Msa0978540 AT5G38410.2 66.272 169 45 2 2 159 4 171 1.47e-80 236
Msa0978540 AT1G67090.2 67.857 84 27 0 6 89 7 90 9.62e-37 124

Find 78 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAAACTTAGTAGGTTTC+TGG 0.166011 6_4:-14616038 None:intergenic
CTATATATAATAGTGAAATT+TGG 0.219235 6_4:-14614712 None:intergenic
GGATTGGTGGCTGAAAATTT+TGG 0.236681 6_4:-14614658 None:intergenic
AGAAAATTATAGGATAATAA+TGG 0.261019 6_4:-14616284 None:intergenic
ACCCACTATTAGAAAATTAT+AGG 0.271115 6_4:-14616294 None:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.291082 6_4:-14614911 None:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 6_4:-14616071 None:intergenic
CTCTTTGTAGCAATATCATT+TGG 0.320788 6_4:-14616256 None:intergenic
TTGTTGGTCTTCTTGGTGAC+TGG 0.326813 6_4:-14614904 None:intergenic
TTTGGATGTTACTTATCTAA+TGG 0.339223 6_4:-14614694 None:intergenic
AACTCATTCATCAGAATCAT+TGG 0.341056 6_4:+14615966 Msa0978540:CDS
GATACTATGACGGACGTTAC+TGG 0.345500 6_4:+14615859 Msa0978540:CDS
GAAAATTATAGGATAATAAT+GGG 0.352354 6_4:-14616283 None:intergenic
ATGATTCTGATGAATGAGTT+TGG 0.359780 6_4:-14615963 None:intergenic
TTGTGGATATTACATAATAT+TGG 0.377801 6_4:-14614618 None:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 6_4:-14615243 None:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 6_4:+14615914 Msa0978540:CDS
TTTCCCTTGGAAATTAAGAA+TGG 0.416082 6_4:+14616194 Msa0978540:three_prime_UTR
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 6_4:+14615885 Msa0978540:CDS
ACCCCTCACTGAGGAACAAT+TGG 0.420148 6_4:+14615284 Msa0978540:CDS
GTGCAAATATCAAACTTAGT+AGG 0.441976 6_4:-14616045 None:intergenic
AACTTGGTTGCTCCGTTCAC+CGG 0.448528 6_4:+14614859 Msa0978540:CDS
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 6_4:-14615286 None:intergenic
TGTTGGTCTTCTTGGTGACT+GGG 0.456367 6_4:-14614903 None:intergenic
ATGTTACTTATCTAATGGTA+TGG 0.470320 6_4:-14614689 None:intergenic
ACCGGTCTCAAATCCTCAGC+TGG 0.471949 6_4:+14614877 Msa0978540:CDS
GTTAGCGGAGACGCGGTTAA+CGG 0.473759 6_4:-14614839 None:intergenic
TGATTCTGATGAATGAGTTT+GGG 0.474330 6_4:-14615962 None:intergenic
ACAAACAAAGTAGTAATAAA+GGG 0.474757 6_4:-14616070 None:intergenic
AGAAGCAAAAGTTGAGTACT+TGG 0.476132 6_4:+14614762 Msa0978540:five_prime_UTR
ATATGTATTCGGATTTCCCT+TGG 0.481597 6_4:+14616181 Msa0978540:three_prime_UTR
TCATCCATTCTTAATTTCCA+AGG 0.487270 6_4:-14616198 None:intergenic
CGTGAGAACCACCGTTCACC+AGG 0.497088 6_4:+14615837 Msa0978540:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 6_4:-14614935 None:intergenic
TTGCCATTTGTCTCTTGACT+AGG 0.506082 6_4:-14616416 None:intergenic
AACGGTGGTAACAGCGGCGG+AGG 0.513043 6_4:-14614821 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 6_4:-14614938 None:intergenic
GAGTACTTGGTGAACTAAGA+AGG 0.524666 6_4:+14614775 Msa0978540:five_prime_UTR
CATCCATTCTTAATTTCCAA+GGG 0.526651 6_4:-14616197 None:intergenic
AACTTCTTCTTGCCAACTGG+TGG 0.532490 6_4:-14615240 None:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 6_4:-14614920 None:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 6_4:+14615290 Msa0978540:CDS
TCTAATGGTATGGAATTGAA+AGG 0.540730 6_4:-14614679 None:intergenic
TGTCTCTTGACTAGGAATTG+TGG 0.547434 6_4:-14616408 None:intergenic
ATTCCTAGTCAAGAGACAAA+TGG 0.548181 6_4:+14616413 Msa0978540:three_prime_UTR
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 6_4:-14615287 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 6_4:-14615855 None:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 6_4:-14615836 None:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 6_4:+14614934 Msa0978540:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 6_4:-14615278 None:intergenic
ACCAGCTGAGGATTTGAGAC+CGG 0.573385 6_4:-14614878 None:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 6_4:-14615285 None:intergenic
TTGGTGAACTAAGAAGGAAA+AGG 0.579936 6_4:+14614781 Msa0978540:five_prime_UTR
TGGTATGGAATTGAAAGGAT+TGG 0.588953 6_4:-14614674 None:intergenic
GAGGATTTGAGACCGGTGAA+CGG 0.590974 6_4:-14614871 None:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 6_4:-14615897 None:intergenic
TTATAGGTGTGGCCACCAGT+TGG 0.602882 6_4:+14615228 Msa0978540:intron
ACCGTTGGATTGTGTAATTG+TGG 0.604311 6_4:-14614635 None:intergenic
GAACGGAGCAACCAAGTTAG+CGG 0.608890 6_4:-14614854 None:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 6_4:+14614931 Msa0978540:CDS
CAACCAAGTTAGCGGAGACG+CGG 0.626784 6_4:-14614846 None:intergenic
TATGGAATTGAAAGGATTGG+TGG 0.630616 6_4:-14614671 None:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 6_4:+14614954 Msa0978540:CDS
CAACACTTGAGAAGAATCAG+TGG 0.638041 6_4:-14615910 None:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 6_4:-14615848 None:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 6_4:-14615282 None:intergenic
TCCACAATTACACAATCCAA+CGG 0.644234 6_4:+14614634 Msa0978540:five_prime_UTR
GGGAAATATAGTTCTTACAA+CGG 0.648531 6_4:-14616099 None:intergenic
GGTGACTGGGAAACCAGCTG+AGG 0.655087 6_4:-14614890 None:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 6_4:-14615845 None:intergenic
GCGGTTAACGGTGGTAACAG+CGG 0.666203 6_4:-14614827 None:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 6_4:-14616067 None:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 6_4:+14615871 Msa0978540:CDS
AGCGGAGACGCGGTTAACGG+TGG 0.674421 6_4:-14614836 None:intergenic
GTTAACGGTGGTAACAGCGG+CGG 0.699396 6_4:-14614824 None:intergenic
CGTTCACCAGGATACTATGA+CGG 0.703631 6_4:+14615849 Msa0978540:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 6_4:+14615868 Msa0978540:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 6_4:+14615275 Msa0978540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATGAAATTAAATTTTATA+TGG - chr6_4:14615017-14615036 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_4:14615560-14615579 None:intergenic 10.0%
!!! TTTTTTGATATTGTTAAATA+TGG + chr6_4:14616375-14616394 Msa0978540:three_prime_UTR 10.0%
!!! ACATGAAATTAAATTTTATA+TGG - chr6_4:14615017-14615036 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_4:14615560-14615579 None:intergenic 10.0%
!!! TTTTTTGATATTGTTAAATA+TGG + chr6_4:14616375-14616394 Msa0978540:three_prime_UTR 10.0%
!! CTATATATAATAGTGAAATT+TGG - chr6_4:14614715-14614734 None:intergenic 15.0%
!! ATACATAAAATTGAGTATTA+GGG - chr6_4:14615203-14615222 None:intergenic 15.0%
!! TATACATAAAATTGAGTATT+AGG - chr6_4:14615204-14615223 None:intergenic 15.0%
!! TAAGTTAAAAAGGAAAAAAA+AGG - chr6_4:14615394-14615413 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_4:14615489-14615508 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_4:14615598-14615617 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_4:14616122-14616141 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_4:14616123-14616142 None:intergenic 15.0%
!! ATATAAACCAAAAATACATT+AGG - chr6_4:14616165-14616184 None:intergenic 15.0%
!!! ATTTTTGGTTTATATGTATT+CGG + chr6_4:14616170-14616189 Msa0978540:three_prime_UTR 15.0%
!! GAAAATTATAGGATAATAAT+GGG - chr6_4:14616286-14616305 None:intergenic 15.0%
!! AGAAAATTATAGGATAATAA+TGG - chr6_4:14616287-14616306 None:intergenic 15.0%
!! CTATATATAATAGTGAAATT+TGG - chr6_4:14614715-14614734 None:intergenic 15.0%
!! ATACATAAAATTGAGTATTA+GGG - chr6_4:14615203-14615222 None:intergenic 15.0%
!! TATACATAAAATTGAGTATT+AGG - chr6_4:14615204-14615223 None:intergenic 15.0%
!! TAAGTTAAAAAGGAAAAAAA+AGG - chr6_4:14615394-14615413 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_4:14615489-14615508 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_4:14615598-14615617 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_4:14616122-14616141 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_4:14616123-14616142 None:intergenic 15.0%
!! ATATAAACCAAAAATACATT+AGG - chr6_4:14616165-14616184 None:intergenic 15.0%
!!! ATTTTTGGTTTATATGTATT+CGG + chr6_4:14616170-14616189 Msa0978540:three_prime_UTR 15.0%
!! GAAAATTATAGGATAATAAT+GGG - chr6_4:14616286-14616305 None:intergenic 15.0%
!! AGAAAATTATAGGATAATAA+TGG - chr6_4:14616287-14616306 None:intergenic 15.0%
!! TTGTGGATATTACATAATAT+TGG - chr6_4:14614621-14614640 None:intergenic 20.0%
!! ATATGGTATATGCAAAAATA+TGG - chr6_4:14615000-14615019 None:intergenic 20.0%
!! TTACATATTTATGTACCTTA+AGG + chr6_4:14615041-14615060 Msa0978540:intron 20.0%
!! TCATAATTTAAGTAACCTTA+AGG - chr6_4:14615059-14615078 None:intergenic 20.0%
!! ATGTCACAGAAAAATAAAAT+TGG + chr6_4:14615099-14615118 Msa0978540:intron 20.0%
!! ATGTATAATATTTATAGGTG+TGG + chr6_4:14615217-14615236 Msa0978540:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_4:14615404-14615423 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_4:14615600-14615619 Msa0978540:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_4:14615804-14615823 Msa0978540:intron 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_4:14616073-14616092 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_4:14616074-14616093 None:intergenic 20.0%
!!! ATCCTATAATTTTCTAATAG+TGG + chr6_4:14616292-14616311 Msa0978540:three_prime_UTR 20.0%
!!! TCCTATAATTTTCTAATAGT+GGG + chr6_4:14616293-14616312 Msa0978540:three_prime_UTR 20.0%
!! TTGTGGATATTACATAATAT+TGG - chr6_4:14614621-14614640 None:intergenic 20.0%
!! ATATGGTATATGCAAAAATA+TGG - chr6_4:14615000-14615019 None:intergenic 20.0%
!! TTACATATTTATGTACCTTA+AGG + chr6_4:14615041-14615060 Msa0978540:intron 20.0%
!! TCATAATTTAAGTAACCTTA+AGG - chr6_4:14615059-14615078 None:intergenic 20.0%
!! ATGTCACAGAAAAATAAAAT+TGG + chr6_4:14615099-14615118 Msa0978540:intron 20.0%
!! ATGTATAATATTTATAGGTG+TGG + chr6_4:14615217-14615236 Msa0978540:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_4:14615404-14615423 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_4:14615600-14615619 Msa0978540:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_4:14615804-14615823 Msa0978540:intron 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_4:14616073-14616092 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_4:14616074-14616093 None:intergenic 20.0%
!!! ATCCTATAATTTTCTAATAG+TGG + chr6_4:14616292-14616311 Msa0978540:three_prime_UTR 20.0%
!!! TCCTATAATTTTCTAATAGT+GGG + chr6_4:14616293-14616312 Msa0978540:three_prime_UTR 20.0%
!!! AAGAGTTTTAGGTTTTGAAA+TGG - chr6_4:14614592-14614611 None:intergenic 25.0%
!! ATGTTACTTATCTAATGGTA+TGG - chr6_4:14614692-14614711 None:intergenic 25.0%
!! TTTGGATGTTACTTATCTAA+TGG - chr6_4:14614697-14614716 None:intergenic 25.0%
!! ATATGCAAAAATATGGACTA+CGG - chr6_4:14614993-14615012 None:intergenic 25.0%
! TTAATTAATTGTGTCAGCTT+TGG - chr6_4:14615161-14615180 None:intergenic 25.0%
! GCTTCATGATAAAATTTGAT+TGG - chr6_4:14615467-14615486 None:intergenic 25.0%
!! AGATCATCCTAATGTATTTT+TGG + chr6_4:14616155-14616174 Msa0978540:three_prime_UTR 25.0%
! ACCCACTATTAGAAAATTAT+AGG - chr6_4:14616297-14616316 None:intergenic 25.0%
!!! AAGAGTTTTAGGTTTTGAAA+TGG - chr6_4:14614592-14614611 None:intergenic 25.0%
!! ATGTTACTTATCTAATGGTA+TGG - chr6_4:14614692-14614711 None:intergenic 25.0%
!! TTTGGATGTTACTTATCTAA+TGG - chr6_4:14614697-14614716 None:intergenic 25.0%
!! ATATGCAAAAATATGGACTA+CGG - chr6_4:14614993-14615012 None:intergenic 25.0%
! TTAATTAATTGTGTCAGCTT+TGG - chr6_4:14615161-14615180 None:intergenic 25.0%
! GCTTCATGATAAAATTTGAT+TGG - chr6_4:14615467-14615486 None:intergenic 25.0%
!! AGATCATCCTAATGTATTTT+TGG + chr6_4:14616155-14616174 Msa0978540:three_prime_UTR 25.0%
! ACCCACTATTAGAAAATTAT+AGG - chr6_4:14616297-14616316 None:intergenic 25.0%
! CAAAACCTAAAACTCTTTTG+TGG + chr6_4:14614595-14614614 Msa0978540:five_prime_UTR 30.0%
TCTAATGGTATGGAATTGAA+AGG - chr6_4:14614682-14614701 None:intergenic 30.0%
CTAAGAAGGAAAAGGAAAAA+TGG + chr6_4:14614789-14614808 Msa0978540:exon 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_4:14615429-14615448 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_4:14615607-14615626 Msa0978540:intron 30.0%
TGATTCTGATGAATGAGTTT+GGG - chr6_4:14615965-14615984 None:intergenic 30.0%
ATGATTCTGATGAATGAGTT+TGG - chr6_4:14615966-14615985 None:intergenic 30.0%
AACTCATTCATCAGAATCAT+TGG + chr6_4:14615966-14615985 Msa0978540:CDS 30.0%
TATCAAACTTAGTAGGTTTC+TGG - chr6_4:14616041-14616060 None:intergenic 30.0%
GTGCAAATATCAAACTTAGT+AGG - chr6_4:14616048-14616067 None:intergenic 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_4:14616070-14616089 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+CGG - chr6_4:14616102-14616121 None:intergenic 30.0%
TTTCCCTTGGAAATTAAGAA+TGG + chr6_4:14616194-14616213 Msa0978540:three_prime_UTR 30.0%
CATCCATTCTTAATTTCCAA+GGG - chr6_4:14616200-14616219 None:intergenic 30.0%
TCATCCATTCTTAATTTCCA+AGG - chr6_4:14616201-14616220 None:intergenic 30.0%
CTCTTTGTAGCAATATCATT+TGG - chr6_4:14616259-14616278 None:intergenic 30.0%
! CAAAACCTAAAACTCTTTTG+TGG + chr6_4:14614595-14614614 Msa0978540:five_prime_UTR 30.0%
TCTAATGGTATGGAATTGAA+AGG - chr6_4:14614682-14614701 None:intergenic 30.0%
CTAAGAAGGAAAAGGAAAAA+TGG + chr6_4:14614789-14614808 Msa0978540:exon 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_4:14615429-14615448 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_4:14615607-14615626 Msa0978540:intron 30.0%
TGATTCTGATGAATGAGTTT+GGG - chr6_4:14615965-14615984 None:intergenic 30.0%
ATGATTCTGATGAATGAGTT+TGG - chr6_4:14615966-14615985 None:intergenic 30.0%
AACTCATTCATCAGAATCAT+TGG + chr6_4:14615966-14615985 Msa0978540:CDS 30.0%
TATCAAACTTAGTAGGTTTC+TGG - chr6_4:14616041-14616060 None:intergenic 30.0%
GTGCAAATATCAAACTTAGT+AGG - chr6_4:14616048-14616067 None:intergenic 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_4:14616070-14616089 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+CGG - chr6_4:14616102-14616121 None:intergenic 30.0%
TTTCCCTTGGAAATTAAGAA+TGG + chr6_4:14616194-14616213 Msa0978540:three_prime_UTR 30.0%
CATCCATTCTTAATTTCCAA+GGG - chr6_4:14616200-14616219 None:intergenic 30.0%
TCATCCATTCTTAATTTCCA+AGG - chr6_4:14616201-14616220 None:intergenic 30.0%
CTCTTTGTAGCAATATCATT+TGG - chr6_4:14616259-14616278 None:intergenic 30.0%
! ATTGGCCACAAAAGAGTTTT+AGG - chr6_4:14614603-14614622 None:intergenic 35.0%
TCCACAATTACACAATCCAA+CGG + chr6_4:14614634-14614653 Msa0978540:five_prime_UTR 35.0%
TATGGAATTGAAAGGATTGG+TGG - chr6_4:14614674-14614693 None:intergenic 35.0%
TGGTATGGAATTGAAAGGAT+TGG - chr6_4:14614677-14614696 None:intergenic 35.0%
AGAAGCAAAAGTTGAGTACT+TGG + chr6_4:14614762-14614781 Msa0978540:five_prime_UTR 35.0%
TTGGTGAACTAAGAAGGAAA+AGG + chr6_4:14614781-14614800 Msa0978540:five_prime_UTR 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_4:14614914-14614933 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_4:14614923-14614942 None:intergenic 35.0%
! AAAAATATGGACTACGGCTT+GGG - chr6_4:14614987-14615006 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_4:14615310-14615329 Msa0978540:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_4:14615314-14615333 Msa0978540:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_4:14615315-14615334 Msa0978540:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_4:14615348-14615367 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_4:14615347-14615366 Msa0978540:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_4:14615673-14615692 Msa0978540:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_4:14615914-14615933 Msa0978540:CDS 35.0%
ATATGTATTCGGATTTCCCT+TGG + chr6_4:14616181-14616200 Msa0978540:three_prime_UTR 35.0%
ATTCCTAGTCAAGAGACAAA+TGG + chr6_4:14616413-14616432 Msa0978540:three_prime_UTR 35.0%
! ATTGGCCACAAAAGAGTTTT+AGG - chr6_4:14614603-14614622 None:intergenic 35.0%
TCCACAATTACACAATCCAA+CGG + chr6_4:14614634-14614653 Msa0978540:five_prime_UTR 35.0%
TATGGAATTGAAAGGATTGG+TGG - chr6_4:14614674-14614693 None:intergenic 35.0%
TGGTATGGAATTGAAAGGAT+TGG - chr6_4:14614677-14614696 None:intergenic 35.0%
AGAAGCAAAAGTTGAGTACT+TGG + chr6_4:14614762-14614781 Msa0978540:five_prime_UTR 35.0%
TTGGTGAACTAAGAAGGAAA+AGG + chr6_4:14614781-14614800 Msa0978540:five_prime_UTR 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_4:14614914-14614933 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_4:14614923-14614942 None:intergenic 35.0%
! AAAAATATGGACTACGGCTT+GGG - chr6_4:14614987-14615006 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_4:14615310-14615329 Msa0978540:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_4:14615314-14615333 Msa0978540:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_4:14615315-14615334 Msa0978540:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_4:14615348-14615367 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_4:14615347-14615366 Msa0978540:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_4:14615673-14615692 Msa0978540:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_4:14615914-14615933 Msa0978540:CDS 35.0%
ATATGTATTCGGATTTCCCT+TGG + chr6_4:14616181-14616200 Msa0978540:three_prime_UTR 35.0%
ACCGTTGGATTGTGTAATTG+TGG - chr6_4:14614638-14614657 None:intergenic 40.0%
!! GGATTGGTGGCTGAAAATTT+TGG - chr6_4:14614661-14614680 None:intergenic 40.0%
! GAGTACTTGGTGAACTAAGA+AGG + chr6_4:14614775-14614794 Msa0978540:five_prime_UTR 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_4:14614931-14614950 Msa0978540:CDS 40.0%
! CAAAAATATGGACTACGGCT+TGG - chr6_4:14614988-14615007 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_4:14615246-14615265 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_4:14615319-14615338 Msa0978540:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_4:14615622-14615641 Msa0978540:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_4:14615646-14615665 Msa0978540:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_4:14615744-14615763 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_4:14615769-14615788 Msa0978540:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_4:14615770-14615789 Msa0978540:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_4:14615774-14615793 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_4:14615913-14615932 None:intergenic 40.0%
TGTCTCTTGACTAGGAATTG+TGG - chr6_4:14616411-14616430 None:intergenic 40.0%
ACCGTTGGATTGTGTAATTG+TGG - chr6_4:14614638-14614657 None:intergenic 40.0%
!! GGATTGGTGGCTGAAAATTT+TGG - chr6_4:14614661-14614680 None:intergenic 40.0%
! GAGTACTTGGTGAACTAAGA+AGG + chr6_4:14614775-14614794 Msa0978540:five_prime_UTR 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_4:14614931-14614950 Msa0978540:CDS 40.0%
! CAAAAATATGGACTACGGCT+TGG - chr6_4:14614988-14615007 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_4:14615246-14615265 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_4:14615319-14615338 Msa0978540:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_4:14615622-14615641 Msa0978540:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_4:14615646-14615665 Msa0978540:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_4:14615744-14615763 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_4:14615769-14615788 Msa0978540:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_4:14615770-14615789 Msa0978540:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_4:14615774-14615793 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_4:14615913-14615932 None:intergenic 40.0%
TGTCTCTTGACTAGGAATTG+TGG - chr6_4:14616411-14616430 None:intergenic 40.0%
! GGCTGAAAATTTTGGACCGT+TGG - chr6_4:14614653-14614672 None:intergenic 45.0%
!! TGTTGGTCTTCTTGGTGACT+GGG - chr6_4:14614906-14614925 None:intergenic 45.0%
!! TTGTTGGTCTTCTTGGTGAC+TGG - chr6_4:14614907-14614926 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_4:14614941-14614960 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_4:14614954-14614973 Msa0978540:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_4:14615243-14615262 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_4:14615289-14615308 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_4:14615290-14615309 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_4:14615290-14615309 Msa0978540:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_4:14615326-14615345 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_4:14615332-14615351 Msa0978540:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_4:14615701-14615720 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_4:14615720-14615739 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_4:14615761-14615780 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_4:14615851-14615870 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_4:14615849-14615868 Msa0978540:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_4:14615858-14615877 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_4:14615859-14615878 Msa0978540:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_4:14615885-14615904 Msa0978540:CDS 45.0%
! GGCTGAAAATTTTGGACCGT+TGG - chr6_4:14614653-14614672 None:intergenic 45.0%
!! TGTTGGTCTTCTTGGTGACT+GGG - chr6_4:14614906-14614925 None:intergenic 45.0%
!! TTGTTGGTCTTCTTGGTGAC+TGG - chr6_4:14614907-14614926 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_4:14614941-14614960 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_4:14614954-14614973 Msa0978540:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_4:14615243-14615262 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_4:14615289-14615308 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_4:14615290-14615309 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_4:14615290-14615309 Msa0978540:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_4:14615326-14615345 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_4:14615332-14615351 Msa0978540:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_4:14615701-14615720 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_4:14615720-14615739 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_4:14615761-14615780 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_4:14615851-14615870 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_4:14615849-14615868 Msa0978540:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_4:14615858-14615877 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_4:14615859-14615878 Msa0978540:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_4:14615885-14615904 Msa0978540:CDS 45.0%
!!! ATTTTATGTATAATATTTAT+AGG + chr6_4:14615212-14615231 Msa0978540:intron 5.0%
!!! ATTTTATGTATAATATTTAT+AGG + chr6_4:14615212-14615231 Msa0978540:intron 5.0%
GAACGGAGCAACCAAGTTAG+CGG - chr6_4:14614857-14614876 None:intergenic 50.0%
AACTTGGTTGCTCCGTTCAC+CGG + chr6_4:14614859-14614878 Msa0978540:CDS 50.0%
! GAGGATTTGAGACCGGTGAA+CGG - chr6_4:14614874-14614893 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_4:14614881-14614900 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_4:14614934-14614953 Msa0978540:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_4:14614938-14614957 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_4:14615228-14615247 Msa0978540:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_4:14615285-14615304 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_4:14615284-14615303 Msa0978540:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_4:14615288-14615307 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_4:14615637-14615656 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_4:14615652-14615671 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_4:14615654-14615673 Msa0978540:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_4:14615661-14615680 Msa0978540:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_4:14615712-14615731 Msa0978540:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_4:14615848-14615867 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_4:14615868-14615887 Msa0978540:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_4:14615871-14615890 Msa0978540:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_4:14615900-14615919 None:intergenic 50.0%
GAACGGAGCAACCAAGTTAG+CGG - chr6_4:14614857-14614876 None:intergenic 50.0%
AACTTGGTTGCTCCGTTCAC+CGG + chr6_4:14614859-14614878 Msa0978540:CDS 50.0%
! GAGGATTTGAGACCGGTGAA+CGG - chr6_4:14614874-14614893 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_4:14614881-14614900 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_4:14614934-14614953 Msa0978540:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_4:14614938-14614957 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_4:14615228-14615247 Msa0978540:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_4:14615285-14615304 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_4:14615284-14615303 Msa0978540:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_4:14615288-14615307 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_4:14615637-14615656 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_4:14615652-14615671 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_4:14615654-14615673 Msa0978540:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_4:14615661-14615680 Msa0978540:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_4:14615712-14615731 Msa0978540:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_4:14615848-14615867 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_4:14615868-14615887 Msa0978540:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_4:14615871-14615890 Msa0978540:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_4:14615900-14615919 None:intergenic 50.0%
GTTAACGGTGGTAACAGCGG+CGG - chr6_4:14614827-14614846 None:intergenic 55.0%
GCGGTTAACGGTGGTAACAG+CGG - chr6_4:14614830-14614849 None:intergenic 55.0%
GTTAGCGGAGACGCGGTTAA+CGG - chr6_4:14614842-14614861 None:intergenic 55.0%
TAACCGCGTCTCCGCTAACT+TGG + chr6_4:14614843-14614862 Msa0978540:CDS 55.0%
CAACCAAGTTAGCGGAGACG+CGG - chr6_4:14614849-14614868 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_4:14614877-14614896 Msa0978540:CDS 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_4:14615275-14615294 Msa0978540:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_4:14615839-14615858 None:intergenic 55.0%
GTTAACGGTGGTAACAGCGG+CGG - chr6_4:14614827-14614846 None:intergenic 55.0%
GCGGTTAACGGTGGTAACAG+CGG - chr6_4:14614830-14614849 None:intergenic 55.0%
GTTAGCGGAGACGCGGTTAA+CGG - chr6_4:14614842-14614861 None:intergenic 55.0%
TAACCGCGTCTCCGCTAACT+TGG + chr6_4:14614843-14614862 Msa0978540:CDS 55.0%
CAACCAAGTTAGCGGAGACG+CGG - chr6_4:14614849-14614868 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_4:14614877-14614896 Msa0978540:CDS 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_4:14615275-14615294 Msa0978540:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_4:14615839-14615858 None:intergenic 55.0%
GGTGACTGGGAAACCAGCTG+AGG - chr6_4:14614893-14614912 None:intergenic 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_4:14615281-14615300 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_4:14615837-14615856 Msa0978540:CDS 60.0%
GGTGACTGGGAAACCAGCTG+AGG - chr6_4:14614893-14614912 None:intergenic 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_4:14615281-14615300 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_4:14615837-14615856 Msa0978540:CDS 60.0%
AACGGTGGTAACAGCGGCGG+AGG - chr6_4:14614824-14614843 None:intergenic 65.0%
AGCGGAGACGCGGTTAACGG+TGG - chr6_4:14614839-14614858 None:intergenic 65.0%
AACGGTGGTAACAGCGGCGG+AGG - chr6_4:14614824-14614843 None:intergenic 65.0%
AGCGGAGACGCGGTTAACGG+TGG - chr6_4:14614839-14614858 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 14614582 14616435 14614582 ID=Msa0978540;Name=Msa0978540
chr6_4 mRNA 14614582 14616435 14614582 ID=Msa0978540-mRNA-1;Parent=Msa0978540;Name=Msa0978540-mRNA-1;_AED=0.31;_eAED=0.31;_QI=226|0.5|0.66|1|1|1|3|383|159
chr6_4 exon 14614582 14614975 14614582 ID=Msa0978540-mRNA-1:exon:4783;Parent=Msa0978540-mRNA-1
chr6_4 exon 14615234 14615314 14615234 ID=Msa0978540-mRNA-1:exon:4784;Parent=Msa0978540-mRNA-1
chr6_4 exon 14615822 14616435 14615822 ID=Msa0978540-mRNA-1:exon:4785;Parent=Msa0978540-mRNA-1
chr6_4 five_prime_UTR 14614582 14614807 14614582 ID=Msa0978540-mRNA-1:five_prime_utr;Parent=Msa0978540-mRNA-1
chr6_4 CDS 14614808 14614975 14614808 ID=Msa0978540-mRNA-1:cds;Parent=Msa0978540-mRNA-1
chr6_4 CDS 14615234 14615314 14615234 ID=Msa0978540-mRNA-1:cds;Parent=Msa0978540-mRNA-1
chr6_4 CDS 14615822 14616052 14615822 ID=Msa0978540-mRNA-1:cds;Parent=Msa0978540-mRNA-1
chr6_4 three_prime_UTR 14616053 14616435 14616053 ID=Msa0978540-mRNA-1:three_prime_utr;Parent=Msa0978540-mRNA-1
Gene Sequence

>Msa0978540

ATGGCTTTGATCTCCTCCGCCGCTGTTACCACCGTTAACCGCGTCTCCGCTAACTTGGTTGCTCCGTTCACCGGTCTCAAATCCTCAGCTGGTTTCCCAGTCACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAAACTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAGAAACCTACTAA

Protein sequence

>Msa0978540

MALISSAAVTTVNRVSANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPNSFIRIIGFDNVRQVQCISFIAHTPETY*