AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1095880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095880 MtrunA17_Chr7g0222751 91.667 240 2 2 1 222 1 240 9.86e-159 438
Msa1095880 MtrunA17_Chr1g0212681 35.079 191 107 2 48 222 45 234 4.76e-38 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095880 AT3G55330.1 57.561 205 68 2 34 219 24 228 2.80e-78 235
Msa1095880 AT2G39470.1 36.264 182 98 2 57 222 59 238 2.27e-34 123
Msa1095880 AT2G39470.2 36.264 182 98 2 57 222 51 230 2.43e-34 122
Msa1095880 AT2G39470.3 38.614 101 60 1 57 157 51 149 3.91e-15 70.9

Find 59 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAGGATATTAAAGAATT+TGG 0.087552 7_3:+19291001 Msa1095880:CDS
TATCAGTTTGTCTACCCTTT+TGG 0.224713 7_3:+19290396 Msa1095880:CDS
TAATATCCTGTTTGCTTGTT+GGG 0.249086 7_3:-19290991 None:intergenic
TGCTGCAACTCTGATTAAAA+AGG 0.255663 7_3:+19291127 Msa1095880:CDS
CAATGAAATCTTTGCCGTTA+TGG 0.295501 7_3:+19293206 Msa1095880:three_prime_UTR
TTAATATCCTGTTTGCTTGT+TGG 0.307481 7_3:-19290992 None:intergenic
GTTGAATATAAGTTATAATA+TGG 0.308322 7_3:+19293346 Msa1095880:intron
AACAGGATATTAAAGAATTT+GGG 0.349485 7_3:+19291002 Msa1095880:CDS
AGAATTTGGGTCACCCGAAC+AGG 0.372871 7_3:+19291015 Msa1095880:CDS
GTAATCAAACTTTGAAAAGT+TGG 0.397062 7_3:-19293082 None:intergenic
AAGGGATGCCATTGTTGGCT+TGG 0.406266 7_3:-19288635 None:intergenic
TATAAGCCTCTAACCTGTTC+GGG 0.410961 7_3:-19291028 None:intergenic
GAACTGTCATCTTCTTCAAC+AGG 0.413644 7_3:+19288859 Msa1095880:CDS
CTGAAATCCTGTCTTATTAT+CGG 0.414796 7_3:-19290349 None:intergenic
AGAGCATGTCGAGTGTAGTT+TGG 0.423846 7_3:-19292875 None:intergenic
ATATAAGCCTCTAACCTGTT+CGG 0.424666 7_3:-19291029 None:intergenic
TGCCGTTATGGTTGTTACTT+CGG 0.424843 7_3:+19293218 Msa1095880:three_prime_UTR
TCAATTTGAGTTCGTTGCTC+AGG 0.432517 7_3:+19292850 Msa1095880:CDS
CTTTCAGAACTCTTTCCCTC+AGG 0.433137 7_3:+19288687 Msa1095880:CDS
CCATCTTTCCTATCCACAAC+TGG 0.446635 7_3:-19290372 None:intergenic
CAGGAGCAAATGAGAGAAGA+TGG 0.450749 7_3:+19293018 Msa1095880:CDS
TCTCGCCAGCGTGAAATTGA+CGG 0.454379 7_3:+19292815 Msa1095880:intron
CTCATTTGCTCCTGTAGTCA+AGG 0.464935 7_3:-19293009 None:intergenic
ATGCTCACCTGCCATCCAAA+AGG 0.465805 7_3:-19290411 None:intergenic
AATGATCCCAACAAGCAAAC+AGG 0.474787 7_3:+19290985 Msa1095880:CDS
GTTTGTTCTATCTATGTGGT+TGG 0.482154 7_3:-19288569 None:intergenic
GCAATCTTACAAGAAATTGA+AGG 0.484107 7_3:-19290236 None:intergenic
AAGTTGGAAGGATTCTACTA+TGG 0.484592 7_3:-19293066 None:intergenic
GTTATATTTACCTTGGCAGA+AGG 0.491015 7_3:-19293374 None:intergenic
TGTTCTATCTATGTGGTTGG+AGG 0.491332 7_3:-19288566 None:intergenic
TATTGTTTGTTCTATCTATG+TGG 0.495684 7_3:-19288573 None:intergenic
CCAGTTGTGGATAGGAAAGA+TGG 0.501189 7_3:+19290372 Msa1095880:CDS
GCTCTCAGCGCAGTCTCCAT+TGG 0.509239 7_3:+19292893 Msa1095880:CDS
GTCTGAAGGGATGCCATTGT+TGG 0.514922 7_3:-19288640 None:intergenic
AGTGATTGAAGGTCAAGATA+AGG 0.519938 7_3:+19290919 Msa1095880:CDS
TCAAACTTTGAAAAGTTGGA+AGG 0.520854 7_3:-19293078 None:intergenic
GACAGGATTTCAGCCAGTTG+TGG 0.527616 7_3:+19290359 Msa1095880:CDS
GATTTCAGCCAGTTGTGGAT+AGG 0.527897 7_3:+19290364 Msa1095880:CDS
AGGAGCAAATGAGAGAAGAT+GGG 0.535543 7_3:+19293019 Msa1095880:CDS
TAGCTGCAATGGCAATCGCT+TGG 0.540355 7_3:-19290184 None:intergenic
AAATATAATAAACTCTTCAT+CGG 0.541059 7_3:+19293126 Msa1095880:three_prime_UTR
GGGCAGGAAGTAGTGATTGA+AGG 0.544637 7_3:+19290908 Msa1095880:intron
TCTTACAAGAAATTGAAGGT+TGG 0.546111 7_3:-19290232 None:intergenic
TGCTCACCTGCCATCCAAAA+GGG 0.554318 7_3:-19290410 None:intergenic
CAAAACTATACCATTGCCAA+TGG 0.556022 7_3:-19292909 None:intergenic
TGCAAAATCCAAGCCAACAA+TGG 0.558415 7_3:+19288627 Msa1095880:exon
GGACATGAGAGGATAGGTTG+TGG 0.564414 7_3:+19288500 None:intergenic
TAATGGGGCAGTAGCTGCAA+TGG 0.569156 7_3:-19290195 None:intergenic
TTATATTTACCTTGGCAGAA+GGG 0.573309 7_3:-19293373 None:intergenic
TTCCGAAGTAACAACCATAA+CGG 0.576263 7_3:-19293220 None:intergenic
GTTGCCGCCGATAATAAGAC+AGG 0.584506 7_3:+19290342 Msa1095880:intron
TATGGCAAACCCTTCTGCCA+AGG 0.593431 7_3:+19293364 Msa1095880:three_prime_UTR
AGCGCAGTCTCCATTGGCAA+TGG 0.595444 7_3:+19292899 Msa1095880:CDS
GAAGTGTAGGTGAAGTCTGA+AGG 0.619544 7_3:-19288654 None:intergenic
GTGATTGTGTTGCAGAAGCA+TGG 0.631753 7_3:+19288772 Msa1095880:intron
AAGTGTAGGTGAAGTCTGAA+GGG 0.633332 7_3:-19288653 None:intergenic
AAGAGAGTTCTGTGAAGTGT+AGG 0.636649 7_3:-19288667 None:intergenic
GGAGCAAATGAGAGAAGATG+GGG 0.657624 7_3:+19293020 Msa1095880:CDS
AAATCCTGTCTTATTATCGG+CGG 0.658599 7_3:-19290346 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATAAAAATATCTTAT+AGG + chr7_3:19292038-19292057 Msa1095880:intron 10.0%
!!! TTTTAACTAAAAAATTAAAG+TGG - chr7_3:19292232-19292251 None:intergenic 10.0%
!!! ATTTTAGTGATTAATTTGTT+CGG - chr7_3:19289669-19289688 None:intergenic 15.0%
!!! TTAAACATTCATTCTTTTAT+CGG - chr7_3:19289695-19289714 None:intergenic 15.0%
!!! ATTTGTTTTCAATAGAATTT+TGG + chr7_3:19289734-19289753 Msa1095880:intron 15.0%
!!! TTTGTTTTCAATAGAATTTT+GGG + chr7_3:19289735-19289754 Msa1095880:intron 15.0%
!! ATTATAAAAATTCATGTCAT+AGG + chr7_3:19290648-19290667 Msa1095880:intron 15.0%
!! ACACATTGAATAAAAAATTA+TGG + chr7_3:19290725-19290744 Msa1095880:intron 15.0%
!! ACAAAAAGAAATAAAATTAC+AGG + chr7_3:19290773-19290792 Msa1095880:intron 15.0%
!! CAAAAAGAAATAAAATTACA+GGG + chr7_3:19290774-19290793 Msa1095880:intron 15.0%
!! TTAAATCATTTATCAATAAG+AGG + chr7_3:19290834-19290853 Msa1095880:intron 15.0%
!! ATATTCAAATATACACAAAA+GGG - chr7_3:19292764-19292783 None:intergenic 15.0%
!! TATATTCAAATATACACAAA+AGG - chr7_3:19292765-19292784 None:intergenic 15.0%
!! AAATATAATAAACTCTTCAT+CGG + chr7_3:19293126-19293145 Msa1095880:three_prime_UTR 15.0%
!! GTTGAATATAAGTTATAATA+TGG + chr7_3:19293346-19293365 Msa1095880:intron 15.0%
!! ATAGTATGTATTATGCAATA+TGG + chr7_3:19288939-19288958 Msa1095880:intron 20.0%
!!! TTTGATTCTTAAGTTTTCAA+GGG + chr7_3:19289377-19289396 Msa1095880:intron 20.0%
!!! TTTTAGTGATTAATTTGTTC+GGG - chr7_3:19289668-19289687 None:intergenic 20.0%
!!! TTGTTTTAATAAACTCCTTA+AGG - chr7_3:19289816-19289835 None:intergenic 20.0%
!!! AAAGTTTGCTATATTTTCAA+GGG - chr7_3:19290474-19290493 None:intergenic 20.0%
!! GGTAAAGTAAAAAAATTACA+GGG - chr7_3:19290506-19290525 None:intergenic 20.0%
!!! TGATAGTTTTTTATATTGCA+GGG - chr7_3:19290528-19290547 None:intergenic 20.0%
!!! ATGATAGTTTTTTATATTGC+AGG - chr7_3:19290529-19290548 None:intergenic 20.0%
!! AAACAGGATATTAAAGAATT+TGG + chr7_3:19291001-19291020 Msa1095880:CDS 20.0%
!! AACAGGATATTAAAGAATTT+GGG + chr7_3:19291002-19291021 Msa1095880:CDS 20.0%
!!! CTTATTTTAAATTTGTTTGC+AGG + chr7_3:19291103-19291122 Msa1095880:intron 20.0%
!! TTATAATGACATAAAAAGCA+AGG - chr7_3:19291223-19291242 None:intergenic 20.0%
!!! CAACTAATTTTGCTTAAAAA+CGG + chr7_3:19291911-19291930 Msa1095880:intron 20.0%
!! TTAAATAAGACAATCCAAAT+AGG - chr7_3:19291960-19291979 None:intergenic 20.0%
!!! TAAGCTATTTCTATAACAAA+AGG - chr7_3:19292094-19292113 None:intergenic 20.0%
!!! TAATTAAATTGTTTCTCCAA+AGG + chr7_3:19292139-19292158 Msa1095880:intron 20.0%
!!! AATTAAATTGTTTCTCCAAA+GGG + chr7_3:19292140-19292159 Msa1095880:intron 20.0%
!!! TTTGGACAATATTTCTAAAT+TGG - chr7_3:19292342-19292361 None:intergenic 20.0%
!! ACATATACAAAAATGTGATT+AGG - chr7_3:19292536-19292555 None:intergenic 20.0%
!! TATTCAAATATACACAAAAG+GGG - chr7_3:19292763-19292782 None:intergenic 20.0%
! TATTGTTTGTTCTATCTATG+TGG - chr7_3:19288576-19288595 None:intergenic 25.0%
!! CTTTGATTCTTAAGTTTTCA+AGG + chr7_3:19289376-19289395 Msa1095880:intron 25.0%
!!! TTTAGTGATTAATTTGTTCG+GGG - chr7_3:19289667-19289686 None:intergenic 25.0%
! CAAGTACGAAAAAACTATTT+GGG - chr7_3:19289920-19289939 None:intergenic 25.0%
! TCAAGTACGAAAAAACTATT+TGG - chr7_3:19289921-19289940 None:intergenic 25.0%
! TGGTTTATATGATATATGTG+AGG - chr7_3:19289971-19289990 None:intergenic 25.0%
! AAACATGTATGACAAATGAT+AGG - chr7_3:19290088-19290107 None:intergenic 25.0%
!! ATACTTTTGTCAGATATATC+AGG + chr7_3:19290155-19290174 Msa1095880:intron 25.0%
!!! CAAAGTTTGCTATATTTTCA+AGG - chr7_3:19290475-19290494 None:intergenic 25.0%
! GGGTAAAGTAAAAAAATTAC+AGG - chr7_3:19290507-19290526 None:intergenic 25.0%
!!! GATAGTTTTTTATATTGCAG+GGG - chr7_3:19290527-19290546 None:intergenic 25.0%
! TTATCAATAAGAGGCTAAAA+TGG + chr7_3:19290843-19290862 Msa1095880:intron 25.0%
!!! TCCTTGTTTTTCTTTTATCA+TGG + chr7_3:19290880-19290899 Msa1095880:intron 25.0%
!!! CCTTGTTTTTCTTTTATCAT+GGG + chr7_3:19290881-19290900 Msa1095880:intron 25.0%
!!! CTTGTTTTTCTTTTATCATG+GGG + chr7_3:19290882-19290901 Msa1095880:intron 25.0%
!! AACTCTGATTAAAAAGGTTT+TGG + chr7_3:19291133-19291152 Msa1095880:intron 25.0%
!!! ATTATCTTTGTTTTCTGGTT+TGG - chr7_3:19291164-19291183 None:intergenic 25.0%
! TGAACAAATAAAAACCAAAC+TGG - chr7_3:19291395-19291414 None:intergenic 25.0%
! TGGAATAGTATACTAATGAT+AGG + chr7_3:19291447-19291466 Msa1095880:intron 25.0%
!!! ATGACTTGGTTAAAAGAATT+TGG + chr7_3:19291537-19291556 Msa1095880:intron 25.0%
! TTGTTTGAAGAAGATAACAA+TGG - chr7_3:19291894-19291913 None:intergenic 25.0%
! GTTATAGAAATAGCTTACAT+AGG + chr7_3:19292097-19292116 Msa1095880:intron 25.0%
! AATATTCATACACAAGTTAG+TGG + chr7_3:19292177-19292196 Msa1095880:intron 25.0%
! AGTCATCATATTTACCATTT+AGG + chr7_3:19292296-19292315 Msa1095880:intron 25.0%
! AGAAATATTGTCCAAAAGAA+AGG + chr7_3:19292346-19292365 Msa1095880:intron 25.0%
! GAAATATTGTCCAAAAGAAA+GGG + chr7_3:19292347-19292366 Msa1095880:intron 25.0%
!! ATATTGAATACCCTTTCTTT+TGG - chr7_3:19292360-19292379 None:intergenic 25.0%
! ACACAAGAAGATTAAGATTT+AGG - chr7_3:19292477-19292496 None:intergenic 25.0%
! CACATCCTTATTAGTTATTA+CGG - chr7_3:19292596-19292615 None:intergenic 25.0%
! AGATTAATGATCTTCAGTTA+AGG + chr7_3:19292644-19292663 Msa1095880:intron 25.0%
! TCAGTTAAGGTTAAATTGAT+TGG + chr7_3:19292657-19292676 Msa1095880:intron 25.0%
!! TTTTAGTCAAGGTTTAAACT+CGG - chr7_3:19292688-19292707 None:intergenic 25.0%
!!! CTAAATTATTTTTTGGTTGC+AGG + chr7_3:19292975-19292994 Msa1095880:intron 25.0%
!! GTAATCAAACTTTGAAAAGT+TGG - chr7_3:19293085-19293104 None:intergenic 25.0%
! TATATTCAACCATAACATTG+AGG - chr7_3:19293336-19293355 None:intergenic 25.0%
! GGAAAAAGTTATATTTACCT+TGG - chr7_3:19293384-19293403 None:intergenic 25.0%
!! TGACTTTCATTTTCATCTTT+TGG - chr7_3:19293405-19293424 None:intergenic 25.0%
TGACAATGTGTTTATAAGTG+GGG - chr7_3:19289308-19289327 None:intergenic 30.0%
CTGACAATGTGTTTATAAGT+GGG - chr7_3:19289309-19289328 None:intergenic 30.0%
!! TTAGTGATTAATTTGTTCGG+GGG - chr7_3:19289666-19289685 None:intergenic 30.0%
! GTTTTCAATAGAATTTTGGG+TGG + chr7_3:19289738-19289757 Msa1095880:intron 30.0%
TGTATCTGATGACAAAAACA+CGG - chr7_3:19289897-19289916 None:intergenic 30.0%
! TAACACCTTGTTTGTGTTTA+TGG + chr7_3:19290009-19290028 Msa1095880:intron 30.0%
TTTCTCCATAAACACAAACA+AGG - chr7_3:19290017-19290036 None:intergenic 30.0%
! TTTTGTCAGATATATCAGGA+AGG + chr7_3:19290159-19290178 Msa1095880:intron 30.0%
GTTGAACAGAAAAACTAATG+GGG - chr7_3:19290213-19290232 None:intergenic 30.0%
GGTTGAACAGAAAAACTAAT+GGG - chr7_3:19290214-19290233 None:intergenic 30.0%
TGGTTGAACAGAAAAACTAA+TGG - chr7_3:19290215-19290234 None:intergenic 30.0%
TCTTACAAGAAATTGAAGGT+TGG - chr7_3:19290235-19290254 None:intergenic 30.0%
GCAATCTTACAAGAAATTGA+AGG - chr7_3:19290239-19290258 None:intergenic 30.0%
! CTGAAATCCTGTCTTATTAT+CGG - chr7_3:19290352-19290371 None:intergenic 30.0%
TCACTGTTAAAAAACTGATG+TGG + chr7_3:19290569-19290588 Msa1095880:intron 30.0%
CACATCAGCTTATATTAACA+GGG + chr7_3:19290693-19290712 Msa1095880:intron 30.0%
ATTATGGTTTCTGATATTGC+AGG + chr7_3:19290741-19290760 Msa1095880:intron 30.0%
TTATGGTTTCTGATATTGCA+GGG + chr7_3:19290742-19290761 Msa1095880:intron 30.0%
ACTAAAATCACTATACTTGC+AGG + chr7_3:19290797-19290816 Msa1095880:intron 30.0%
CTAAAATCACTATACTTGCA+GGG + chr7_3:19290798-19290817 Msa1095880:intron 30.0%
CCCATGATAAAAGAAAAACA+AGG - chr7_3:19290884-19290903 None:intergenic 30.0%
TAATATCCTGTTTGCTTGTT+GGG - chr7_3:19290994-19291013 None:intergenic 30.0%
TTAATATCCTGTTTGCTTGT+TGG - chr7_3:19290995-19291014 None:intergenic 30.0%
!!! CCTGAATTATCTTTGTTTTC+TGG - chr7_3:19291169-19291188 None:intergenic 30.0%
CCAGAAAACAAAGATAATTC+AGG + chr7_3:19291166-19291185 Msa1095880:intron 30.0%
!!! TTTTTTGAACAGTTCAACTG+TGG - chr7_3:19291331-19291350 None:intergenic 30.0%
!!! ATTCCAATCTTATTTTGGCA+AGG + chr7_3:19291505-19291524 Msa1095880:intron 30.0%
TATCCTTGCCAAAATAAGAT+TGG - chr7_3:19291511-19291530 None:intergenic 30.0%
CAAGGATAATTTAGATGACT+TGG + chr7_3:19291523-19291542 Msa1095880:intron 30.0%
! TAAAAGAATTTGGCTTCATG+TGG + chr7_3:19291547-19291566 Msa1095880:intron 30.0%
!! ACATGTCCATAAGTTGTTTT+CGG + chr7_3:19291992-19292011 Msa1095880:intron 30.0%
AATAAGCCGAAAACAACTTA+TGG - chr7_3:19292001-19292020 None:intergenic 30.0%
ATAAACTCTTGAAGAGCTTA+TGG - chr7_3:19292025-19292044 None:intergenic 30.0%
!!! GATTTTTTTTTAGCTTCCTG+AGG + chr7_3:19292257-19292276 Msa1095880:intron 30.0%
ATTTACCATTTAGGAATTCC+TGG + chr7_3:19292305-19292324 Msa1095880:intron 30.0%
TATTATCACAAGCAAGTCTT+TGG + chr7_3:19292397-19292416 Msa1095880:intron 30.0%
ACTGACCGTAATAACTAATA+AGG + chr7_3:19292588-19292607 Msa1095880:intron 30.0%
ACCTTGACTAAAACAATCAT+TGG + chr7_3:19292695-19292714 Msa1095880:intron 30.0%
!!! ACCAATGATTGTTTTAGTCA+AGG - chr7_3:19292699-19292718 None:intergenic 30.0%
! TCAAACTTTGAAAAGTTGGA+AGG - chr7_3:19293081-19293100 None:intergenic 30.0%
TTATATTTACCTTGGCAGAA+GGG - chr7_3:19293376-19293395 None:intergenic 30.0%
! TGGTTACACTTTTAGCACAA+TGG + chr7_3:19288520-19288539 Msa1095880:five_prime_UTR 35.0%
GTTTGTTCTATCTATGTGGT+TGG - chr7_3:19288572-19288591 None:intergenic 35.0%
! AGTACTTTTCGTAGAAGAGA+AGG + chr7_3:19288808-19288827 Msa1095880:CDS 35.0%
CTCTGATACCATCTTAGAAA+TGG + chr7_3:19289232-19289251 Msa1095880:intron 35.0%
TGATACCATCTTAGAAATGG+TGG + chr7_3:19289235-19289254 Msa1095880:intron 35.0%
GACAATGTGTTTATAAGTGG+GGG - chr7_3:19289307-19289326 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG - chr7_3:19289310-19289329 None:intergenic 35.0%
CCACTTATAAACACATTGTC+AGG + chr7_3:19289307-19289326 Msa1095880:intron 35.0%
! ATTTGTTAAGAGTCCCACAT+TGG - chr7_3:19289344-19289363 None:intergenic 35.0%
TAAGAATCAAAGAGCAACAG+AGG - chr7_3:19289368-19289387 None:intergenic 35.0%
TGACAAGAACTTATTGAACC+TGG + chr7_3:19289409-19289428 Msa1095880:intron 35.0%
! TGTGCAATGGTTCATTTTGT+TGG + chr7_3:19289483-19289502 Msa1095880:intron 35.0%
! TTGTTGGTTATTGACGTGTT+TGG + chr7_3:19289499-19289518 Msa1095880:intron 35.0%
AAACCACACATGAACAATCT+CGG + chr7_3:19289985-19290004 Msa1095880:intron 35.0%
GATGTCAGGAATCAGTATTT+AGG - chr7_3:19290295-19290314 None:intergenic 35.0%
! AAATCCTGTCTTATTATCGG+CGG - chr7_3:19290349-19290368 None:intergenic 35.0%
! TATCAGTTTGTCTACCCTTT+TGG + chr7_3:19290396-19290415 Msa1095880:CDS 35.0%
TATACACTGTTTGCTTCAGT+AGG + chr7_3:19290437-19290456 Msa1095880:intron 35.0%
CCTGTTAATATAAGCTGATG+TGG - chr7_3:19290695-19290714 None:intergenic 35.0%
CCACATCAGCTTATATTAAC+AGG + chr7_3:19290692-19290711 Msa1095880:intron 35.0%
TATGGTTTCTGATATTGCAG+GGG + chr7_3:19290743-19290762 Msa1095880:intron 35.0%
AGAGGCTAAAATGGAAGTTA+AGG + chr7_3:19290852-19290871 Msa1095880:intron 35.0%
! TTTTCTTTTATCATGGGGAG+TGG + chr7_3:19290887-19290906 Msa1095880:intron 35.0%
! TTTCTTTTATCATGGGGAGT+GGG + chr7_3:19290888-19290907 Msa1095880:intron 35.0%
AGTGATTGAAGGTCAAGATA+AGG + chr7_3:19290919-19290938 Msa1095880:CDS 35.0%
ATATAAGCCTCTAACCTGTT+CGG - chr7_3:19291032-19291051 None:intergenic 35.0%
!! TTCTAGAATCAATGCAAGTC+AGG - chr7_3:19291058-19291077 None:intergenic 35.0%
!! TGACTTGCATTGATTCTAGA+AGG + chr7_3:19291057-19291076 Msa1095880:intron 35.0%
TGCTGCAACTCTGATTAAAA+AGG + chr7_3:19291127-19291146 Msa1095880:CDS 35.0%
!!! ATCTTTGTTTTCTGGTTTGG+AGG - chr7_3:19291161-19291180 None:intergenic 35.0%
AAAGATAATTCAGGCAACTG+AGG + chr7_3:19291175-19291194 Msa1095880:intron 35.0%
AAATGAACCAGACAGCAAAT+TGG + chr7_3:19291251-19291270 Msa1095880:intron 35.0%
! CAACAAGTTGAACCATGAAT+TGG - chr7_3:19291366-19291385 None:intergenic 35.0%
CAAATAAAAACCAAACTGGC+CGG - chr7_3:19291391-19291410 None:intergenic 35.0%
GTATACTATTCCATTCTTCC+AGG - chr7_3:19291440-19291459 None:intergenic 35.0%
! GATTTTACCAATGTCAAGAG+TGG + chr7_3:19291469-19291488 Msa1095880:intron 35.0%
!! CTCGCATTCCAATCTTATTT+TGG + chr7_3:19291500-19291519 Msa1095880:intron 35.0%
!! ATAATATCATGAGCGTTGGA+GGG - chr7_3:19291864-19291883 None:intergenic 35.0%
!! AATAATATCATGAGCGTTGG+AGG - chr7_3:19291865-19291884 None:intergenic 35.0%
AGCAATAATATCATGAGCGT+TGG - chr7_3:19291868-19291887 None:intergenic 35.0%
AAGTTTAGATGAATACCAGC+TGG + chr7_3:19291934-19291953 Msa1095880:intron 35.0%
AGCTTACATAGGCACTAATA+CGG + chr7_3:19292108-19292127 Msa1095880:intron 35.0%
TTCATACACAAGTTAGTGGT+AGG + chr7_3:19292181-19292200 Msa1095880:intron 35.0%
CAAGTTAGTGGTAGGAAATA+TGG + chr7_3:19292189-19292208 Msa1095880:intron 35.0%
TCCTGAGGATATTTAGCAAA+AGG + chr7_3:19292272-19292291 Msa1095880:intron 35.0%
! ACCTTTTGCTAAATATCCTC+AGG - chr7_3:19292276-19292295 None:intergenic 35.0%
AAATTGGAGATATCTTCACC+AGG - chr7_3:19292326-19292345 None:intergenic 35.0%
AAATATACACAAAAGGGGTC+TGG - chr7_3:19292758-19292777 None:intergenic 35.0%
CAAAACTATACCATTGCCAA+TGG - chr7_3:19292912-19292931 None:intergenic 35.0%
! CATTGGCAATGGTATAGTTT+TGG + chr7_3:19292910-19292929 Msa1095880:intron 35.0%
! AAGTTTTACACCTTGACTAC+AGG + chr7_3:19292999-19293018 Msa1095880:CDS 35.0%
AAGTTGGAAGGATTCTACTA+TGG - chr7_3:19293069-19293088 None:intergenic 35.0%
CAATGAAATCTTTGCCGTTA+TGG + chr7_3:19293206-19293225 Msa1095880:three_prime_UTR 35.0%
TTCCGAAGTAACAACCATAA+CGG - chr7_3:19293223-19293242 None:intergenic 35.0%
GATTCCATTCCTCAATGTTA+TGG + chr7_3:19293324-19293343 Msa1095880:intron 35.0%
TCAACCATAACATTGAGGAA+TGG - chr7_3:19293331-19293350 None:intergenic 35.0%
GTTATATTTACCTTGGCAGA+AGG - chr7_3:19293377-19293396 None:intergenic 35.0%
TGTTCTATCTATGTGGTTGG+AGG - chr7_3:19288569-19288588 None:intergenic 40.0%
TGCAAAATCCAAGCCAACAA+TGG + chr7_3:19288627-19288646 Msa1095880:exon 40.0%
AAGTGTAGGTGAAGTCTGAA+GGG - chr7_3:19288656-19288675 None:intergenic 40.0%
AAGAGAGTTCTGTGAAGTGT+AGG - chr7_3:19288670-19288689 None:intergenic 40.0%
!! TAATGCATGAGAGTACCTGA+GGG - chr7_3:19288705-19288724 None:intergenic 40.0%
!! TTAATGCATGAGAGTACCTG+AGG - chr7_3:19288706-19288725 None:intergenic 40.0%
GGTACTCTCATGCATTAACT+TGG + chr7_3:19288708-19288727 Msa1095880:intron 40.0%
GAACTGTCATCTTCTTCAAC+AGG + chr7_3:19288859-19288878 Msa1095880:CDS 40.0%
! TTCAACAGGTTGCTTTCTCA+AGG + chr7_3:19288873-19288892 Msa1095880:intron 40.0%
TACTATCTCCTATCCGATGT+GGG + chr7_3:19289090-19289109 Msa1095880:intron 40.0%
TGCTATCAGGTTTCTGCTAT+CGG - chr7_3:19289187-19289206 None:intergenic 40.0%
! CTCAACCACCATTTCTAAGA+TGG - chr7_3:19289243-19289262 None:intergenic 40.0%
!!! ACCTCAAAAGCTGGTTTTGT+GGG - chr7_3:19289276-19289295 None:intergenic 40.0%
TTAAGAGTCCCACATTGGAT+AGG - chr7_3:19289339-19289358 None:intergenic 40.0%
GCATCCTTGGTCATTAATGT+AGG + chr7_3:19289434-19289453 Msa1095880:intron 40.0%
TCTGCCTACATTAATGACCA+AGG - chr7_3:19289441-19289460 None:intergenic 40.0%
TTGCACAATGCATCTTCATC+AGG - chr7_3:19289470-19289489 None:intergenic 40.0%
GATGAAGATGCATTGTGCAA+TGG + chr7_3:19289470-19289489 Msa1095880:intron 40.0%
TTAAATTCACAGTCCCCTGA+AGG + chr7_3:19289555-19289574 Msa1095880:intron 40.0%
ACACCGAAGGAATTCTAAGT+AGG + chr7_3:19289601-19289620 Msa1095880:intron 40.0%
CCTCCTACTTAGAATTCCTT+CGG - chr7_3:19289607-19289626 None:intergenic 40.0%
!! CAATAGAATTTTGGGTGGAC+AGG + chr7_3:19289743-19289762 Msa1095880:intron 40.0%
!! AATTTTGGGTGGACAGGAAT+TGG + chr7_3:19289749-19289768 Msa1095880:intron 40.0%
AGTCTCTTGAAGCTACCTTA+AGG + chr7_3:19289798-19289817 Msa1095880:intron 40.0%
!! CAAAAACACGGAGAAGTGTT+TGG - chr7_3:19289885-19289904 None:intergenic 40.0%
TATTTAGGAAAGACAGCAGG+TGG - chr7_3:19290280-19290299 None:intergenic 40.0%
CAGTATTTAGGAAAGACAGC+AGG - chr7_3:19290283-19290302 None:intergenic 40.0%
CATATCAAGGGAATACTCTC+AGG - chr7_3:19290317-19290336 None:intergenic 40.0%
!! CTGAGAGTATTCCCTTGATA+TGG + chr7_3:19290315-19290334 Msa1095880:intron 40.0%
! AGTTTGTCTACCCTTTTGGA+TGG + chr7_3:19290400-19290419 Msa1095880:CDS 40.0%
AAACTGATGTGGCAAACGTT+TGG + chr7_3:19290580-19290599 Msa1095880:intron 40.0%
AATGATCCCAACAAGCAAAC+AGG + chr7_3:19290985-19291004 Msa1095880:CDS 40.0%
TATAAGCCTCTAACCTGTTC+GGG - chr7_3:19291031-19291050 None:intergenic 40.0%
!! TGCATTGATTCTAGAAGGAG+AGG + chr7_3:19291062-19291081 Msa1095880:intron 40.0%
! TGATTCTAGAAGGAGAGGAA+AGG + chr7_3:19291067-19291086 Msa1095880:intron 40.0%
! TTGGTGGTACTGTTTGTTCT+TGG + chr7_3:19291270-19291289 Msa1095880:intron 40.0%
GTTCAACTGTGGTTTCTTCT+TGG - chr7_3:19291320-19291339 None:intergenic 40.0%
!! CATGGTTCAACTTGTTGAAC+CGG + chr7_3:19291369-19291388 Msa1095880:intron 40.0%
TACAAACCACTAAGACCCTT+TGG - chr7_3:19292158-19292177 None:intergenic 40.0%
CTTCACCAGGAATTCCTAAA+TGG - chr7_3:19292313-19292332 None:intergenic 40.0%
ATTGTGTTGCCAAGTTGTTG+AGG + chr7_3:19292617-19292636 Msa1095880:intron 40.0%
TGGATTACGAGAGTTTGACA+AGG - chr7_3:19292738-19292757 None:intergenic 40.0%
! TCAATTTGAGTTCGTTGCTC+AGG + chr7_3:19292850-19292869 Msa1095880:CDS 40.0%
AGGAGCAAATGAGAGAAGAT+GGG + chr7_3:19293019-19293038 Msa1095880:CDS 40.0%
! TGCCGTTATGGTTGTTACTT+CGG + chr7_3:19293218-19293237 Msa1095880:three_prime_UTR 40.0%
CTGCATCTAAATAGCAACTC+TGG + chr7_3:19293284-19293303 Msa1095880:intron 40.0%
GAAGTGTAGGTGAAGTCTGA+AGG - chr7_3:19288657-19288676 None:intergenic 45.0%
CTTTCAGAACTCTTTCCCTC+AGG + chr7_3:19288687-19288706 Msa1095880:CDS 45.0%
GTGATTGTGTTGCAGAAGCA+TGG + chr7_3:19288772-19288791 Msa1095880:intron 45.0%
GTGTCTGACACATCTTAGAG+TGG + chr7_3:19288994-19289013 Msa1095880:intron 45.0%
GACACATCTTAGAGTGGTGT+CGG + chr7_3:19289000-19289019 Msa1095880:intron 45.0%
GTACTATCTCCTATCCGATG+TGG + chr7_3:19289089-19289108 Msa1095880:intron 45.0%
! GCTTGGTTCGTGGACATAAA+TGG + chr7_3:19289153-19289172 Msa1095880:intron 45.0%
TGGTTCGTGGACATAAATGG+TGG + chr7_3:19289156-19289175 Msa1095880:intron 45.0%
GGTTCGTGGACATAAATGGT+GGG + chr7_3:19289157-19289176 Msa1095880:intron 45.0%
GCTATCAGGTTTCTGCTATC+GGG - chr7_3:19289186-19289205 None:intergenic 45.0%
GATAGCAGAAACCTGATAGC+AGG + chr7_3:19289186-19289205 Msa1095880:intron 45.0%
GAGCCTCTTCAAGATCCATT+GGG - chr7_3:19289215-19289234 None:intergenic 45.0%
AGAGCCTCTTCAAGATCCAT+TGG - chr7_3:19289216-19289235 None:intergenic 45.0%
!!! CCTCAAAAGCTGGTTTTGTG+GGG - chr7_3:19289275-19289294 None:intergenic 45.0%
!!! CACCTCAAAAGCTGGTTTTG+TGG - chr7_3:19289277-19289296 None:intergenic 45.0%
!!! CAAAACCAGCTTTTGAGGTG+AGG + chr7_3:19289277-19289296 Msa1095880:intron 45.0%
ATTGAACCTGGTTGCATCCT+TGG + chr7_3:19289421-19289440 Msa1095880:intron 45.0%
TAATGACCAAGGATGCAACC+AGG - chr7_3:19289430-19289449 None:intergenic 45.0%
AAGGAGTAGCTCAGTGGTAT+AGG + chr7_3:19289574-19289593 Msa1095880:intron 45.0%
CCGAAGGAATTCTAAGTAGG+AGG + chr7_3:19289604-19289623 Msa1095880:intron 45.0%
TAGTAGTCGTGATCGAACTC+TGG - chr7_3:19289631-19289650 None:intergenic 45.0%
!! GTGATTAATTTGTTCGGGGG+AGG - chr7_3:19289663-19289682 None:intergenic 45.0%
GGTGGACAGGAATTGGAAAA+TGG + chr7_3:19289756-19289775 Msa1095880:intron 45.0%
TAGCCGAGATTGTTCATGTG+TGG - chr7_3:19289991-19290010 None:intergenic 45.0%
GATTTCAGCCAGTTGTGGAT+AGG + chr7_3:19290364-19290383 Msa1095880:CDS 45.0%
CCATCTTTCCTATCCACAAC+TGG - chr7_3:19290375-19290394 None:intergenic 45.0%
CCAGTTGTGGATAGGAAAGA+TGG + chr7_3:19290372-19290391 Msa1095880:CDS 45.0%
TAAGCTGATGTGGCTAACGT+TGG - chr7_3:19290685-19290704 None:intergenic 45.0%
TGAACCAGACAGCAAATTGG+TGG + chr7_3:19291254-19291273 Msa1095880:intron 45.0%
!! AGTACCACCAATTTGCTGTC+TGG - chr7_3:19291261-19291280 None:intergenic 45.0%
! TGGTTTCTTCTTGGTTCGAG+CGG - chr7_3:19291311-19291330 None:intergenic 45.0%
TTGTTCAGCAGCCATCTATG+TGG + chr7_3:19291408-19291427 Msa1095880:intron 45.0%
CTACATGCCACTCTTGACAT+TGG - chr7_3:19291479-19291498 None:intergenic 45.0%
! TGAATACCAGCTGGCCTATT+TGG + chr7_3:19291943-19291962 Msa1095880:intron 45.0%
GTTTCTCCAAAGGGTCTTAG+TGG + chr7_3:19292149-19292168 Msa1095880:intron 45.0%
AATCTGCGACCTCAACAACT+TGG - chr7_3:19292629-19292648 None:intergenic 45.0%
! CTTTTCCGTCAATTTCACGC+TGG - chr7_3:19292823-19292842 None:intergenic 45.0%
AGAGCATGTCGAGTGTAGTT+TGG - chr7_3:19292878-19292897 None:intergenic 45.0%
CTCATTTGCTCCTGTAGTCA+AGG - chr7_3:19293012-19293031 None:intergenic 45.0%
CAGGAGCAAATGAGAGAAGA+TGG + chr7_3:19293018-19293037 Msa1095880:CDS 45.0%
GGAGCAAATGAGAGAAGATG+GGG + chr7_3:19293020-19293039 Msa1095880:CDS 45.0%
!!! TTAAATTCTAAATTATTTTT+TGG + chr7_3:19292968-19292987 Msa1095880:intron 5.0%
! AAGGGATGCCATTGTTGGCT+TGG - chr7_3:19288638-19288657 None:intergenic 50.0%
GTCTGAAGGGATGCCATTGT+TGG - chr7_3:19288643-19288662 None:intergenic 50.0%
TATCTCCTATCCGATGTGGG+TGG + chr7_3:19289093-19289112 Msa1095880:intron 50.0%
ATCTCCTATCCGATGTGGGT+GGG + chr7_3:19289094-19289113 Msa1095880:intron 50.0%
! TCGTGGACATAAATGGTGGG+CGG + chr7_3:19289160-19289179 Msa1095880:intron 50.0%
AGCAGAAACCTGATAGCAGG+TGG + chr7_3:19289189-19289208 Msa1095880:intron 50.0%
TGGCCCAATGGATCTTGAAG+AGG + chr7_3:19289209-19289228 Msa1095880:intron 50.0%
!!! CTGGTTTTGTGGGGTGTGTT+AGG - chr7_3:19289266-19289285 None:intergenic 50.0%
! CCCCACAAAACCAGCTTTTG+AGG + chr7_3:19289272-19289291 Msa1095880:intron 50.0%
GCAATCCTCACCTCAAAAGC+TGG - chr7_3:19289285-19289304 None:intergenic 50.0%
AGGCCATCTCCTATCCAATG+TGG + chr7_3:19289327-19289346 Msa1095880:intron 50.0%
GGCCATCTCCTATCCAATGT+GGG + chr7_3:19289328-19289347 Msa1095880:intron 50.0%
GTCCCACATTGGATAGGAGA+TGG - chr7_3:19289333-19289352 None:intergenic 50.0%
ACCACTGAGCTACTCCTTCA+GGG - chr7_3:19289572-19289591 None:intergenic 50.0%
TACCACTGAGCTACTCCTTC+AGG - chr7_3:19289573-19289592 None:intergenic 50.0%
TGGTATAGGTTCGACACCGA+AGG + chr7_3:19289588-19289607 Msa1095880:intron 50.0%
TAGCTGCAATGGCAATCGCT+TGG - chr7_3:19290187-19290206 None:intergenic 50.0%
TAATGGGGCAGTAGCTGCAA+TGG - chr7_3:19290198-19290217 None:intergenic 50.0%
GGGAATACTCTCAGGATGTC+AGG - chr7_3:19290309-19290328 None:intergenic 50.0%
CGGCAACTGAGCCATATCAA+GGG - chr7_3:19290329-19290348 None:intergenic 50.0%
GTTGCCGCCGATAATAAGAC+AGG + chr7_3:19290342-19290361 Msa1095880:intron 50.0%
GACAGGATTTCAGCCAGTTG+TGG + chr7_3:19290359-19290378 Msa1095880:CDS 50.0%
! TGTCTACCCTTTTGGATGGC+AGG + chr7_3:19290404-19290423 Msa1095880:CDS 50.0%
TGCTCACCTGCCATCCAAAA+GGG - chr7_3:19290413-19290432 None:intergenic 50.0%
ATGCTCACCTGCCATCCAAA+AGG - chr7_3:19290414-19290433 None:intergenic 50.0%
!! CGTTTGGTGATGTGACACTG+AGG + chr7_3:19290596-19290615 Msa1095880:intron 50.0%
!! TTGGTGATGTGACACTGAGG+TGG + chr7_3:19290599-19290618 Msa1095880:intron 50.0%
! TTCATGTCATAGGTGCCGTG+TGG + chr7_3:19290658-19290677 Msa1095880:intron 50.0%
! TTTTATCATGGGGAGTGGGC+AGG + chr7_3:19290892-19290911 Msa1095880:intron 50.0%
GGGCAGGAAGTAGTGATTGA+AGG + chr7_3:19290908-19290927 Msa1095880:intron 50.0%
!! GTTACGCTGACGTTTTCGAG+TGG - chr7_3:19290965-19290984 None:intergenic 50.0%
AGAATTTGGGTCACCCGAAC+AGG + chr7_3:19291015-19291034 Msa1095880:CDS 50.0%
! ACTTGTTGAACCGGCCAGTT+TGG + chr7_3:19291378-19291397 Msa1095880:intron 50.0%
CCAGGACAAAGCCACATAGA+TGG - chr7_3:19291422-19291441 None:intergenic 50.0%
!! CCATCTATGTGGCTTTGTCC+TGG + chr7_3:19291419-19291438 Msa1095880:intron 50.0%
!! GTGGCTTTGTCCTGGAAGAA+TGG + chr7_3:19291427-19291446 Msa1095880:intron 50.0%
ATAGAACTGCTATGCTCCCC+CGG + chr7_3:19291586-19291605 Msa1095880:intron 50.0%
TGCTGCGTTCTGTTAGGCTA+TGG + chr7_3:19291709-19291728 Msa1095880:intron 50.0%
AGTTGAATGAGACAGCAGCC+AGG + chr7_3:19291749-19291768 Msa1095880:intron 50.0%
ACCACCTGCACCTCACATTT+CGG - chr7_3:19291792-19291811 None:intergenic 50.0%
GACAATCCAAATAGGCCAGC+TGG - chr7_3:19291952-19291971 None:intergenic 50.0%
TCTCGCCAGCGTGAAATTGA+CGG + chr7_3:19292815-19292834 Msa1095880:intron 50.0%
TATGGCAAACCCTTCTGCCA+AGG + chr7_3:19293364-19293383 Msa1095880:three_prime_UTR 50.0%
TCTCCTATCCGATGTGGGTG+GGG + chr7_3:19289095-19289114 Msa1095880:intron 55.0%
GTTAAGAGCCCCACCCACAT+CGG - chr7_3:19289106-19289125 None:intergenic 55.0%
!! CAATAGTGCTGGTCGTGAGG+GGG - chr7_3:19289132-19289151 None:intergenic 55.0%
!! CCAATAGTGCTGGTCGTGAG+GGG - chr7_3:19289133-19289152 None:intergenic 55.0%
!! CCCAATAGTGCTGGTCGTGA+GGG - chr7_3:19289134-19289153 None:intergenic 55.0%
CCCTCACGACCAGCACTATT+GGG + chr7_3:19289131-19289150 Msa1095880:intron 55.0%
ACGACCAGCACTATTGGGCT+TGG + chr7_3:19289136-19289155 Msa1095880:intron 55.0%
CGAACCAAGCCCAATAGTGC+TGG - chr7_3:19289143-19289162 None:intergenic 55.0%
! GCACTATTGGGCTTGGTTCG+TGG + chr7_3:19289143-19289162 Msa1095880:intron 55.0%
CCACTGAGCTACTCCTTCAG+GGG - chr7_3:19289571-19289590 None:intergenic 55.0%
GCGGCAACTGAGCCATATCA+AGG - chr7_3:19290330-19290349 None:intergenic 55.0%
GTGATGTGACACTGAGGTGG+CGG + chr7_3:19290602-19290621 Msa1095880:intron 55.0%
GTGGCTAACGTTGGTCCACA+CGG - chr7_3:19290676-19290695 None:intergenic 55.0%
CCATGAATTGGCGCTGTCTG+TGG - chr7_3:19291354-19291373 None:intergenic 55.0%
CCACAGACAGCGCCAATTCA+TGG + chr7_3:19291351-19291370 Msa1095880:intron 55.0%
CACTACTGGCAAAGACCGTC+CGG - chr7_3:19291649-19291668 None:intergenic 55.0%
CTAACAGAACGCAGCAGCGA+GGG - chr7_3:19291705-19291724 None:intergenic 55.0%
TTCCGCTGTGCCGAAATGTG+AGG + chr7_3:19291779-19291798 Msa1095880:intron 55.0%
CACCTCACATTTCGGCACAG+CGG - chr7_3:19291784-19291803 None:intergenic 55.0%
TGTGCCGAAATGTGAGGTGC+AGG + chr7_3:19291785-19291804 Msa1095880:intron 55.0%
! AGGTGGTGATGATCACCCCT+GGG + chr7_3:19291805-19291824 Msa1095880:intron 55.0%
TTTCACGCTGGCGAGACAGA+TGG - chr7_3:19292811-19292830 None:intergenic 55.0%
AGCGCAGTCTCCATTGGCAA+TGG + chr7_3:19292899-19292918 Msa1095880:CDS 55.0%
CCCCTCACGACCAGCACTAT+TGG + chr7_3:19289130-19289149 Msa1095880:intron 60.0%
!! GCCCAATAGTGCTGGTCGTG+AGG - chr7_3:19289135-19289154 None:intergenic 60.0%
CCATTGGGCCACCTGCTATC+AGG - chr7_3:19289200-19289219 None:intergenic 60.0%
CCTGATAGCAGGTGGCCCAA+TGG + chr7_3:19289197-19289216 Msa1095880:intron 60.0%
CCCCTGAAGGAGTAGCTCAG+TGG + chr7_3:19289568-19289587 Msa1095880:intron 60.0%
! ATGTGACACTGAGGTGGCGG+TGG + chr7_3:19290605-19290624 Msa1095880:intron 60.0%
! TGTGACACTGAGGTGGCGGT+GGG + chr7_3:19290606-19290625 Msa1095880:intron 60.0%
GGGTCACCCGAACAGGTTAG+AGG + chr7_3:19291022-19291041 Msa1095880:intron 60.0%
CCTAACAGAACGCAGCAGCG+AGG - chr7_3:19291706-19291725 None:intergenic 60.0%
CCTCGCTGCTGCGTTCTGTT+AGG + chr7_3:19291703-19291722 Msa1095880:intron 60.0%
GCACAGCGGAACGTGTAACC+TGG - chr7_3:19291770-19291789 None:intergenic 60.0%
GCCGAAATGTGAGGTGCAGG+TGG + chr7_3:19291788-19291807 Msa1095880:intron 60.0%
! CAGGTGGTGATGATCACCCC+TGG + chr7_3:19291804-19291823 Msa1095880:intron 60.0%
! GGTCCTGGAGTGCCTGTCAA+GGG - chr7_3:19291843-19291862 None:intergenic 60.0%
!! TCATGAGCGTTGGAGGGTCC+TGG - chr7_3:19291858-19291877 None:intergenic 60.0%
GCTCTCAGCGCAGTCTCCAT+TGG + chr7_3:19292893-19292912 Msa1095880:CDS 60.0%
GAGCCCCACCCACATCGGAT+AGG - chr7_3:19289101-19289120 None:intergenic 65.0%
AAGCGTGGTAGGCCTGTGCC+GGG - chr7_3:19291607-19291626 None:intergenic 65.0%
GAAGCGTGGTAGGCCTGTGC+CGG - chr7_3:19291608-19291627 None:intergenic 65.0%
! CCTGCGGAGTTTTCGCCGGA+CGG + chr7_3:19291631-19291650 Msa1095880:intron 65.0%
AGCGGGGAGGATGGCACTAC+TGG - chr7_3:19291663-19291682 None:intergenic 65.0%
AGTAGTGCCATCCTCCCCGC+TGG + chr7_3:19291662-19291681 Msa1095880:intron 65.0%
! ATCCTCCCCGCTGGCTGTGT+GGG + chr7_3:19291671-19291690 Msa1095880:intron 65.0%
AACTCGCCCACACAGCCAGC+GGG - chr7_3:19291680-19291699 None:intergenic 65.0%
CAACTCGCCCACACAGCCAG+CGG - chr7_3:19291681-19291700 None:intergenic 65.0%
GATCACCCCTGGGTATGCGC+TGG + chr7_3:19291815-19291834 Msa1095880:intron 65.0%
! TATGCGCTGGCGCCCTTGAC+AGG + chr7_3:19291828-19291847 Msa1095880:intron 65.0%
! GGGTCCTGGAGTGCCTGTCA+AGG - chr7_3:19291844-19291863 None:intergenic 65.0%
CTGCTATGCTCCCCCGGCAC+AGG + chr7_3:19291592-19291611 Msa1095880:intron 70.0%
AGCGTGGTAGGCCTGTGCCG+GGG - chr7_3:19291606-19291625 None:intergenic 70.0%
CCTACCACGCTTCGCGCCTG+CGG + chr7_3:19291615-19291634 Msa1095880:intron 70.0%
AACTCCGCAGGCGCGAAGCG+TGG - chr7_3:19291622-19291641 None:intergenic 70.0%
! CGCGCCTGCGGAGTTTTCGC+CGG + chr7_3:19291627-19291646 Msa1095880:intron 70.0%
CCGTCCGGCGAAAACTCCGC+AGG - chr7_3:19291634-19291653 None:intergenic 70.0%
CACACAGCCAGCGGGGAGGA+TGG - chr7_3:19291672-19291691 None:intergenic 70.0%
! CATCCTCCCCGCTGGCTGTG+TGG + chr7_3:19291670-19291689 Msa1095880:intron 70.0%
ACTCGCCCACACAGCCAGCG+GGG - chr7_3:19291679-19291698 None:intergenic 70.0%
! AGGGCGCCAGCGCATACCCA+GGG - chr7_3:19291824-19291843 None:intergenic 70.0%
!! AAGGGCGCCAGCGCATACCC+AGG - chr7_3:19291825-19291844 None:intergenic 70.0%
GCGCCCTTGACAGGCACTCC+AGG + chr7_3:19291837-19291856 Msa1095880:intron 70.0%
GCGTGGTAGGCCTGTGCCGG+GGG - chr7_3:19291605-19291624 None:intergenic 75.0%
CCGCAGGCGCGAAGCGTGGT+AGG - chr7_3:19291618-19291637 None:intergenic 75.0%
GGGCGCCAGCGCATACCCAG+GGG - chr7_3:19291823-19291842 None:intergenic 75.0%
! CGCCCACACAGCCAGCGGGG+AGG - chr7_3:19291676-19291695 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 19288515 19293437 19288515 ID=Msa1095880;Name=Msa1095880
chr7_3 mRNA 19288515 19293437 19288515 ID=Msa1095880-mRNA-1;Parent=Msa1095880;Name=Msa1095880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=131|0.87|0.88|1|0.87|0.77|9|256|222
chr7_3 exon 19288515 19288708 19288515 ID=Msa1095880-mRNA-1:exon:4142;Parent=Msa1095880-mRNA-1
chr7_3 exon 19288787 19288880 19288787 ID=Msa1095880-mRNA-1:exon:4143;Parent=Msa1095880-mRNA-1
chr7_3 exon 19290168 19290248 19290168 ID=Msa1095880-mRNA-1:exon:4144;Parent=Msa1095880-mRNA-1
chr7_3 exon 19290343 19290425 19290343 ID=Msa1095880-mRNA-1:exon:4145;Parent=Msa1095880-mRNA-1
chr7_3 exon 19290914 19291036 19290914 ID=Msa1095880-mRNA-1:exon:4146;Parent=Msa1095880-mRNA-1
chr7_3 exon 19291125 19291148 19291125 ID=Msa1095880-mRNA-1:exon:4147;Parent=Msa1095880-mRNA-1
chr7_3 exon 19292824 19292920 19292824 ID=Msa1095880-mRNA-1:exon:4148;Parent=Msa1095880-mRNA-1
chr7_3 exon 19292997 19293279 19292997 ID=Msa1095880-mRNA-1:exon:4149;Parent=Msa1095880-mRNA-1
chr7_3 exon 19293361 19293437 19293361 ID=Msa1095880-mRNA-1:exon:4150;Parent=Msa1095880-mRNA-1
chr7_3 five_prime_UTR 19288515 19288645 19288515 ID=Msa1095880-mRNA-1:five_prime_utr;Parent=Msa1095880-mRNA-1
chr7_3 CDS 19288646 19288708 19288646 ID=Msa1095880-mRNA-1:cds;Parent=Msa1095880-mRNA-1
chr7_3 CDS 19288787 19288880 19288787 ID=Msa1095880-mRNA-1:cds;Parent=Msa1095880-mRNA-1
chr7_3 CDS 19290168 19290248 19290168 ID=Msa1095880-mRNA-1:cds;Parent=Msa1095880-mRNA-1
chr7_3 CDS 19290343 19290425 19290343 ID=Msa1095880-mRNA-1:cds;Parent=Msa1095880-mRNA-1
chr7_3 CDS 19290914 19291036 19290914 ID=Msa1095880-mRNA-1:cds;Parent=Msa1095880-mRNA-1
chr7_3 CDS 19291125 19291148 19291125 ID=Msa1095880-mRNA-1:cds;Parent=Msa1095880-mRNA-1
chr7_3 CDS 19292824 19292920 19292824 ID=Msa1095880-mRNA-1:cds;Parent=Msa1095880-mRNA-1
chr7_3 CDS 19292997 19293100 19292997 ID=Msa1095880-mRNA-1:cds;Parent=Msa1095880-mRNA-1
chr7_3 three_prime_UTR 19293101 19293279 19293101 ID=Msa1095880-mRNA-1:three_prime_utr;Parent=Msa1095880-mRNA-1
chr7_3 three_prime_UTR 19293361 19293437 19293361 ID=Msa1095880-mRNA-1:three_prime_utr;Parent=Msa1095880-mRNA-1
Gene Sequence

>Msa1095880

ATGGCATCCCTTCAGACTTCACCTACACTTCACAGAACTCTCTTTCAGAACTCTTTCCCTCAGAAGCATGGTAGTAGTAGTAGTAGTACTTTTCGTAGAAGAGAAGGCATTTCTTTCATTGTCAAAGCTGAACAAGAACTGTCATCTTCTTCAACAGATATATCAGGAAGGCGCCAAGCGATTGCCATTGCAGCTACTGCCCCATTAGTTTTTCTGTTCAACCAACCTTCAATTTCTTTTGCCGCCGATAATAAGACAGGATTTCAGCCAGTTGTGGATAGGAAAGATGGATATCAGTTTGTCTACCCTTTTGGATGGCAGGAAGTAGTGATTGAAGGTCAAGATAAGGTGTTCAAAGATGTTATCGAACCACTCGAAAACGTCAGCGTAACAATGATCCCAACAAGCAAACAGGATATTAAAGAATTTGGGTCACCCGAACAGGTTGCTGCAACTCTGATTAAAAAGCGTGAAATTGACGGAAAAGCATATTATCAATTTGAGTTCGTTGCTCAGGCTCCAAACTACACTCGACATGCTCTCAGCGCAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGACTACAGGAGCAAATGAGAGAAGATGGGGAAAGATGAAAGACAGATTGAACACCATAGTAGAATCCTTCCAACTTTTCAAAGTTTGA

Protein sequence

>Msa1095880

MASLQTSPTLHRTLFQNSFPQKHGSSSSSTFRRREGISFIVKAEQELSSSSTDISGRRQAIAIAATAPLVFLFNQPSISFAADNKTGFQPVVDRKDGYQFVYPFGWQEVVIEGQDKVFKDVIEPLENVSVTMIPTSKQDIKEFGSPEQVAATLIKKREIDGKAYYQFEFVAQAPNYTRHALSAVSIGNGKFYTLTTGANERRWGKMKDRLNTIVESFQLFKV*