AlfalfaGEDB | Msa0699200

M. sativa cultivar zhongmu-4 / Msa0699200

KEGG: K01802
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: PF00254.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699200	KEH31436.1	77.917	240	11	5	1	198	1	240	8.02e-111	327

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699200	sp\|Q9SCY2\|FKB13_ARATH	43.519	216	66	7	31	198	1	208	4.18e-45	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699200	A0A072UQ15	77.917	240	11	5	1	198	1	240	3.83e-111	327

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0699200	0.821556	3.792614e-53	-8.615850e-47
Msa0001510	Msa0699200	0.918887	8.941152e-87	-8.615850e-47
Msa0001540	Msa0699200	0.867058	1.810521e-65	-8.615850e-47
Msa0002060	Msa0699200	0.847622	1.029593e-59	-8.615850e-47
Msa0002110	Msa0699200	0.824560	7.555410e-54	-8.615850e-47
Msa0002690	Msa0699200	0.905699	3.257467e-80	-8.615850e-47
Msa0002700	Msa0699200	0.893432	6.320723e-75	-8.615850e-47
Msa0003340	Msa0699200	0.866760	2.252858e-65	-8.615850e-47
Msa0004180	Msa0699200	0.926333	5.417934e-91	-8.615850e-47
Msa0005190	Msa0699200	0.813757	2.177819e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699200	MtrunA17_Chr4g0052911	77.917	240	11	5	1	198	1	240	7.37e-115	327
Msa0699200	MtrunA17_Chr8g0382711	39.231	130	43	3	101	195	76	204	3.22e-18	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699200	AT5G45680.1	43.519	216	66	7	31	198	1	208	4.25e-46	151
Msa0699200	AT4G39710.1	34.568	162	62	5	77	195	48	208	1.91e-18	80.1
Msa0699200	AT4G39710.3	34.568	162	62	5	77	195	48	208	1.91e-18	80.1
Msa0699200	AT5G05420.1	50.667	75	29	2	122	196	75	141	1.05e-13	65.9
Msa0699200	AT4G25340.1	44.000	75	35	2	122	196	408	475	8.61e-11	60.8

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Find 66 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGTACCTGTAAGCAT+AGG	0.604775	4_4:-69826065	None:intergenic
AAATGTAATAAATTCACAGC+TGG	0.508953	4_4:-69827357	None:intergenic
AACTCATTTCCACTGAATTC+AGG	0.301778	4_4:-69824943	None:intergenic
AACTTCCACATTGGATGACA+TGG	0.550172	4_4:+69827457	Msa0699200:three_prime_UTR
AAGCATGATTTACAACTCCA+TGG	0.608035	4_4:+69827233	Msa0699200:exon
AATAACCATGTCATCCAATG+TGG	0.661712	4_4:-69827462	None:intergenic
AATAAGAGTACCGCATCGGG+AGG	0.612454	4_4:-69827190	None:intergenic
AATCTCGGTTCCGATCTCCA+AGG	0.689803	4_4:-69827281	None:intergenic
AATGTGGCAACAAGATGTCA+TGG	0.580208	4_4:+69824855	None:intergenic
AATTGTAGGCACTGGTCCTC+AGG	0.460071	4_4:+69825246	Msa0699200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACTAAAAAAAGGGATGCT+TGG	+	chr4_4:69824914-69824933	Msa0699200:CDS	30.0%
TTGAACAGAACATGTTGTTA+CGG	-	chr4_4:69825038-69825057	None:intergenic	30.0%
TTGAAAAGAAGAGAAGCAAT+AGG	+	chr4_4:69825100-69825119	Msa0699200:CDS	30.0%
GTGACAACAAATGACAAAAA+TGG	-	chr4_4:69825299-69825318	None:intergenic	30.0%
ATAATGGTCAAGTTAAACAC+GGG	-	chr4_4:69825510-69825529	None:intergenic	30.0%
TTAATGTTAGGCACATTATG+TGG	+	chr4_4:69825531-69825550	Msa0699200:intron	30.0%
TAATGTTAGGCACATTATGT+GGG	+	chr4_4:69825532-69825551	Msa0699200:intron	30.0%
TGATGCTATTGATAGAATCA+TGG	-	chr4_4:69825817-69825836	None:intergenic	30.0%
AGCTCTTATGAGATATTGAT+TGG	+	chr4_4:69825884-69825903	Msa0699200:intron	30.0%
TCATATAGGTTATCAAAGGA+TGG	+	chr4_4:69826009-69826028	Msa0699200:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	69824869	69827583	69824869	ID=Msa0699200;Name=Msa0699200
chr4_4	mRNA	69824869	69827583	69824869	ID=Msa0699200-mRNA-1;Parent=Msa0699200;Name=Msa0699200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.25\|0.4\|1\|0.5\|0.2\|5\|343\|198
chr4_4	exon	69824869	69825057	69824869	ID=Msa0699200-mRNA-1:exon:21002;Parent=Msa0699200-mRNA-1
chr4_4	exon	69825067	69825291	69825067	ID=Msa0699200-mRNA-1:exon:21003;Parent=Msa0699200-mRNA-1
chr4_4	exon	69826017	69826077	69826017	ID=Msa0699200-mRNA-1:exon:21004;Parent=Msa0699200-mRNA-1
chr4_4	exon	69826168	69826224	69826168	ID=Msa0699200-mRNA-1:exon:21005;Parent=Msa0699200-mRNA-1
chr4_4	exon	69827176	69827583	69827176	ID=Msa0699200-mRNA-1:exon:21006;Parent=Msa0699200-mRNA-1
chr4_4	CDS	69824869	69825057	69824869	ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4	CDS	69825067	69825291	69825067	ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4	CDS	69826017	69826077	69826017	ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4	CDS	69826168	69826224	69826168	ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4	CDS	69827176	69827240	69827176	ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4	three_prime_UTR	69827241	69827583	69827241	ID=Msa0699200-mRNA-1:three_prime_utr;Parent=Msa0699200-mRNA-1

Gene Sequence

>Msa0699200

ATGTCATGGAACAATATGAACCACAATATCCATATTACTACTAACTTACTAAAAAAAGGGATGCTTGGCCATATCCTGAATTCAGTGGAAATGAGTTCACTGGCACCATATTCAGTTGGGACTTGCCTCACCTCCTTGCAGCCCCAAAAACTTAACCATTCGATTTCCGTAACAACATGTTCTGTTCAACAACCACCAGTTCTTGTACAAAAGGAGAATCAATTGAAAAGAAGAGAAGCAATAGGCCTCTCCTTGAGTTTTGGACTTCTACATTCTTTATTGCAACCAATAATACCCACTGCAACAGCAGCTGAAGCAGTTCCATGTGAATTAACAGTGGCTCCTTCAGGCCTTTCCTATTGTGATAAAATTGTAGGCACTGGTCCTCAGGCTGTTAAGGGACAGCTTATTAAGGTTATCAAAGGATGGGATGTAGGCATTTTAGGAGATGATGGAATTCCTCCTATGCTTACAGGAGGTAAACGTACATTGAAGCTTCCTCCAGAATTTGGATATGGCTCAAGAGGAGCTGGTTCATGTGTCATTCCTCCCGATGCGGTACTCTTATTCGACGTAGAGTTTGTCAGCAAAGCATGA

Protein sequence

>Msa0699200

MSWNNMNHNIHITTNLLKKGMLGHILNSVEMSSLAPYSVGTCLTSLQPQKLNHSISVTTCSVQQPPVLVQKENQLKRREAIGLSLSFGLLHSLLQPIIPTATAAEAVPCELTVAPSGLSYCDKIVGTGPQAVKGQLIKVIKGWDVGILGDDGIPPMLTGGKRTLKLPPEFGYGSRGAGSCVIPPDAVLLFDVEFVSKA*