AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0699200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0699200 MtrunA17_Chr4g0052911 77.917 240 11 5 1 198 1 240 7.37e-115 327
Msa0699200 MtrunA17_Chr8g0382711 39.231 130 43 3 101 195 76 204 3.22e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0699200 AT5G45680.1 43.519 216 66 7 31 198 1 208 4.25e-46 151
Msa0699200 AT4G39710.1 34.568 162 62 5 77 195 48 208 1.91e-18 80.1
Msa0699200 AT4G39710.3 34.568 162 62 5 77 195 48 208 1.91e-18 80.1
Msa0699200 AT5G05420.1 50.667 75 29 2 122 196 75 141 1.05e-13 65.9
Msa0699200 AT4G25340.1 44.000 75 35 2 122 196 408 475 8.61e-11 60.8

Find 66 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAACATGTAAATTAAA+AGG 0.157184 4_4:-69827318 None:intergenic
TTGAAGCTTCCTCCAGAATT+TGG 0.175545 4_4:+69826182 Msa0699200:CDS
ATAGGCCTCTCCTTGAGTTT+TGG 0.275581 4_4:+69825118 Msa0699200:CDS
GATACACTACCAGTTTAAAA+AGG 0.276962 4_4:+69827545 Msa0699200:three_prime_UTR
TTAGTAAGTTAGTAGTAATA+TGG 0.277197 4_4:-69824898 None:intergenic
CACTGGTCCTCAGGCTGTTA+AGG 0.288082 4_4:+69825255 Msa0699200:CDS
GCTGTTGCAGTGGGTATTAT+TGG 0.296220 4_4:-69825163 None:intergenic
AACTCATTTCCACTGAATTC+AGG 0.301778 4_4:-69824943 None:intergenic
GCTCTAGATCACATTGATAA+AGG 0.301927 4_4:+69827382 Msa0699200:three_prime_UTR
CTTGAGCCATATCCAAATTC+TGG 0.313714 4_4:-69826194 None:intergenic
TCCTATTGTGATAAAATTGT+AGG 0.321006 4_4:+69825232 Msa0699200:CDS
TGTTAAGGGACAGCTTATTA+AGG 0.328384 4_4:+69825270 Msa0699200:CDS
GGAATTCCTCCTATGCTTAC+AGG 0.339705 4_4:+69826056 Msa0699200:CDS
CTTCCTCCAGAATTTGGATA+TGG 0.340666 4_4:+69826188 Msa0699200:CDS
TTTCCACTGAATTCAGGATA+TGG 0.346588 4_4:-69824937 None:intergenic
AGGCAAGTCCCAACTGAATA+TGG 0.354350 4_4:-69824974 None:intergenic
TTACCTTCCTTGAATTTCCT+TGG 0.390463 4_4:+69827264 Msa0699200:three_prime_UTR
ATCAAACATGTAAATTAAAA+GGG 0.396485 4_4:-69827317 None:intergenic
GAATTAACAGTGGCTCCTTC+AGG 0.416975 4_4:+69825205 Msa0699200:CDS
TCGAATAAGAGTACCGCATC+GGG 0.420967 4_4:-69827193 None:intergenic
CCTTGAATTTCCTTGGAGAT+CGG 0.447987 4_4:+69827271 Msa0699200:three_prime_UTR
TTGAAAAGAAGAGAAGCAAT+AGG 0.456182 4_4:+69825100 Msa0699200:CDS
AATTGTAGGCACTGGTCCTC+AGG 0.460071 4_4:+69825246 Msa0699200:CDS
ACCACCAGTTCTTGTACAAA+AGG 0.473460 4_4:+69825069 Msa0699200:CDS
ACTGGTCCTCAGGCTGTTAA+GGG 0.476472 4_4:+69825256 Msa0699200:CDS
CACTGGCACCATATTCAGTT+GGG 0.488962 4_4:+69824966 Msa0699200:CDS
TGCTTCAGCTGCTGTTGCAG+TGG 0.492286 4_4:-69825173 None:intergenic
TAGTAGTAATATGGATATTG+TGG 0.506441 4_4:-69824889 None:intergenic
CAAGTACCTGTAAGCATAGG+AGG 0.508846 4_4:-69826062 None:intergenic
AAATGTAATAAATTCACAGC+TGG 0.508953 4_4:-69827357 None:intergenic
CCGATCTCCAAGGAAATTCA+AGG 0.511682 4_4:-69827271 None:intergenic
GGATATGGCTCAAGAGGAGC+TGG 0.513862 4_4:+69826203 Msa0699200:CDS
TGTGATAAAATTGTAGGCAC+TGG 0.515703 4_4:+69825238 Msa0699200:CDS
TCATATAGGTTATCAAAGGA+TGG 0.519848 4_4:+69826009 Msa0699200:intron
GTTATCAAAGGATGGGATGT+AGG 0.520177 4_4:+69826017 Msa0699200:CDS
TTGAACAGAACATGTTGTTA+CGG 0.529455 4_4:-69825035 None:intergenic
TCACTGGCACCATATTCAGT+TGG 0.542595 4_4:+69824965 Msa0699200:CDS
GGAAGGTAATTTGACTGCCA+TGG 0.544498 4_4:-69827250 None:intergenic
AACTTCCACATTGGATGACA+TGG 0.550172 4_4:+69827457 Msa0699200:three_prime_UTR
GCTTCAGCTGCTGTTGCAGT+GGG 0.555863 4_4:-69825172 None:intergenic
GAATTTGGATATGGCTCAAG+AGG 0.566038 4_4:+69826197 Msa0699200:CDS
TTCAGTGGAAATGAGTTCAC+TGG 0.566498 4_4:+69824949 Msa0699200:CDS
TTTGGGGCTGCAAGGAGGTG+AGG 0.573241 4_4:-69824994 None:intergenic
CATATAGGTTATCAAAGGAT+GGG 0.577493 4_4:+69826010 Msa0699200:intron
AATGTGGCAACAAGATGTCA+TGG 0.580208 4_4:+69824855 None:intergenic
ATGTAGAAGTCCAAAACTCA+AGG 0.584843 4_4:-69825128 None:intergenic
TCACAATAGGAAAGGCCTGA+AGG 0.597137 4_4:-69825220 None:intergenic
TGAATCATATAGGTTATCAA+AGG 0.598952 4_4:+69826005 Msa0699200:intron
AAACAAGTACCTGTAAGCAT+AGG 0.604775 4_4:-69826065 None:intergenic
GTCGAATAAGAGTACCGCAT+CGG 0.605120 4_4:-69827194 None:intergenic
AAGCATGATTTACAACTCCA+TGG 0.608035 4_4:+69827233 Msa0699200:exon
AATAAGAGTACCGCATCGGG+AGG 0.612454 4_4:-69827190 None:intergenic
AGCTGTCCCTTAACAGCCTG+AGG 0.613685 4_4:-69825262 None:intergenic
TCAAACATGTAAATTAAAAG+GGG 0.619453 4_4:-69827316 None:intergenic
TGGCCATATCCTGAATTCAG+TGG 0.620127 4_4:+69824934 Msa0699200:CDS
ATCATCATCAACTTCCACAT+TGG 0.622278 4_4:+69827448 Msa0699200:three_prime_UTR
GGAGCCACTGTTAATTCACA+TGG 0.627997 4_4:-69825199 None:intergenic
ATGTTGTTACGGAAATCGAA+TGG 0.632964 4_4:-69825024 None:intergenic
AGTTAAATATAATTAGACTA+CGG 0.636281 4_4:-69827575 None:intergenic
TCTCCAAGGAAATTCAAGGA+AGG 0.641691 4_4:-69827267 None:intergenic
GAAGTCCAAAACTCAAGGAG+AGG 0.645604 4_4:-69825123 None:intergenic
GAGCCATATCCAAATTCTGG+AGG 0.647151 4_4:-69826191 None:intergenic
ATGTGTCATTCCTCCCGATG+CGG 0.653625 4_4:+69827180 Msa0699200:CDS
AATAACCATGTCATCCAATG+TGG 0.661712 4_4:-69827462 None:intergenic
AATCTCGGTTCCGATCTCCA+AGG 0.689803 4_4:-69827281 None:intergenic
AGTTCCATGTGAATTAACAG+TGG 0.724289 4_4:+69825195 Msa0699200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATATGATAAAAGTAAAA+TGG + chr4_4:69825348-69825367 Msa0699200:intron 15.0%
!!! ATAGTTTTAAATTGATGTTA+CGG + chr4_4:69825651-69825670 Msa0699200:intron 15.0%
!! AAATTATTCATGAATCATAT+AGG + chr4_4:69825995-69826014 Msa0699200:intron 15.0%
!!! GTAAATTCTATTTTGTTTTA+TGG + chr4_4:69826099-69826118 Msa0699200:intron 15.0%
!! TATCAAATTTGATCTTTATA+TGG - chr4_4:69826293-69826312 None:intergenic 15.0%
!!! AGGAAAATGAATAATTTTTA+GGG + chr4_4:69826554-69826573 Msa0699200:intron 15.0%
!! ATCAAACATGTAAATTAAAA+GGG - chr4_4:69827320-69827339 None:intergenic 15.0%
!! TTAGTAAGTTAGTAGTAATA+TGG - chr4_4:69824901-69824920 None:intergenic 20.0%
!! ACTACTAACTTACTAAAAAA+AGG + chr4_4:69824905-69824924 Msa0699200:CDS 20.0%
!! CTACTAACTTACTAAAAAAA+GGG + chr4_4:69824906-69824925 Msa0699200:CDS 20.0%
!! TTGACCATTATATTAATGTT+AGG + chr4_4:69825519-69825538 Msa0699200:intron 20.0%
!!! GTAACATCAATTTAAAACTA+TGG - chr4_4:69825652-69825671 None:intergenic 20.0%
!!! TTTTAAATTGCGGTAAATAA+TGG - chr4_4:69825794-69825813 None:intergenic 20.0%
!!! TTTTATTCTTTTCTTACGTT+AGG + chr4_4:69826146-69826165 Msa0699200:intron 20.0%
!!! AAGATCAAATTTGATAACTT+TGG + chr4_4:69826297-69826316 Msa0699200:intron 20.0%
!! TTCAATATACAAAACTTGAT+TGG + chr4_4:69826441-69826460 Msa0699200:intron 20.0%
!! TCAATATACAAAACTTGATT+GGG + chr4_4:69826442-69826461 Msa0699200:intron 20.0%
!!! AAAACTGATTAAATTTGTTG+TGG + chr4_4:69826473-69826492 Msa0699200:intron 20.0%
!!! GAGGAAAATGAATAATTTTT+AGG + chr4_4:69826553-69826572 Msa0699200:intron 20.0%
!!! CAATTTTTTCAAATAATTGC+CGG + chr4_4:69827005-69827024 Msa0699200:intron 20.0%
!! TCAAACATGTAAATTAAAAG+GGG - chr4_4:69827319-69827338 None:intergenic 20.0%
!! CATCAAACATGTAAATTAAA+AGG - chr4_4:69827321-69827340 None:intergenic 20.0%
!!! CTTTTAATTTACATGTTTGA+TGG + chr4_4:69827319-69827338 Msa0699200:three_prime_UTR 20.0%
! TAGTAGTAATATGGATATTG+TGG - chr4_4:69824892-69824911 None:intergenic 25.0%
!! AATCGAATGGTTAAGTTTTT+GGG - chr4_4:69825014-69825033 None:intergenic 25.0%
!! AAATCGAATGGTTAAGTTTT+TGG - chr4_4:69825015-69825034 None:intergenic 25.0%
!! CAATTTTATCACAATAGGAA+AGG - chr4_4:69825231-69825250 None:intergenic 25.0%
! TCCTATTGTGATAAAATTGT+AGG + chr4_4:69825232-69825251 Msa0699200:CDS 25.0%
!! TATAACTGACTTTGTATAGA+AGG + chr4_4:69825323-69825342 Msa0699200:intron 25.0%
! ACTAACTAACTTCATTTCAT+TGG - chr4_4:69825412-69825431 None:intergenic 25.0%
! TATAATGGTCAAGTTAAACA+CGG - chr4_4:69825511-69825530 None:intergenic 25.0%
! TGTGCCTAACATTAATATAA+TGG - chr4_4:69825526-69825545 None:intergenic 25.0%
!! CCTCAAAATCTTTTATATCA+CGG + chr4_4:69825752-69825771 Msa0699200:intron 25.0%
!!! AGAATCATGGTTTTAAATTG+CGG - chr4_4:69825804-69825823 None:intergenic 25.0%
! TGTAACAAGTAACAACTTAT+AGG - chr4_4:69825936-69825955 None:intergenic 25.0%
!!! TAATTTGTTAACATTGAGCA+TGG - chr4_4:69825981-69826000 None:intergenic 25.0%
! TGAATCATATAGGTTATCAA+AGG + chr4_4:69826005-69826024 Msa0699200:intron 25.0%
!!! ATTAAATTTGTTGTGGCATT+AGG + chr4_4:69826480-69826499 Msa0699200:intron 25.0%
! AAAATTGGAAGTTCATTATG+AGG + chr4_4:69826534-69826553 Msa0699200:intron 25.0%
! AATAGAGAAATTGTAATCCT+TGG + chr4_4:69826716-69826735 Msa0699200:intron 25.0%
!! TTCTTTAAGAACTTAATCCA+AGG - chr4_4:69826736-69826755 None:intergenic 25.0%
! TGGATTAAGTTCTTAAAGAA+AGG + chr4_4:69826736-69826755 Msa0699200:intron 25.0%
! CACATGTTCTTTATGATTAA+AGG - chr4_4:69826802-69826821 None:intergenic 25.0%
! GTGTTGTGTCAATAATTTAT+AGG + chr4_4:69827054-69827073 Msa0699200:intron 25.0%
! GGGAAAAATAATAGTAATCT+CGG - chr4_4:69827299-69827318 None:intergenic 25.0%
! AAATGTAATAAATTCACAGC+TGG - chr4_4:69827360-69827379 None:intergenic 25.0%
TTACTAAAAAAAGGGATGCT+TGG + chr4_4:69824914-69824933 Msa0699200:CDS 30.0%
! ATCGAATGGTTAAGTTTTTG+GGG - chr4_4:69825013-69825032 None:intergenic 30.0%
TTGAACAGAACATGTTGTTA+CGG - chr4_4:69825038-69825057 None:intergenic 30.0%
TTGAAAAGAAGAGAAGCAAT+AGG + chr4_4:69825100-69825119 Msa0699200:CDS 30.0%
! GCCTACAATTTTATCACAAT+AGG - chr4_4:69825236-69825255 None:intergenic 30.0%
GTGACAACAAATGACAAAAA+TGG - chr4_4:69825299-69825318 None:intergenic 30.0%
ATAATGGTCAAGTTAAACAC+GGG - chr4_4:69825510-69825529 None:intergenic 30.0%
TTAATGTTAGGCACATTATG+TGG + chr4_4:69825531-69825550 Msa0699200:intron 30.0%
TAATGTTAGGCACATTATGT+GGG + chr4_4:69825532-69825551 Msa0699200:intron 30.0%
! CCGTGATATAAAAGATTTTG+AGG - chr4_4:69825755-69825774 None:intergenic 30.0%
TGATGCTATTGATAGAATCA+TGG - chr4_4:69825817-69825836 None:intergenic 30.0%
! CTCATAAGAGCTTTACATTT+TGG - chr4_4:69825876-69825895 None:intergenic 30.0%
AGCTCTTATGAGATATTGAT+TGG + chr4_4:69825884-69825903 Msa0699200:intron 30.0%
TCATATAGGTTATCAAAGGA+TGG + chr4_4:69826009-69826028 Msa0699200:intron 30.0%
CATATAGGTTATCAAAGGAT+GGG + chr4_4:69826010-69826029 Msa0699200:intron 30.0%
! TATTCTTTTCTTACGTTAGG+AGG + chr4_4:69826149-69826168 Msa0699200:intron 30.0%
GACAATGATGGCAAATTAAA+AGG - chr4_4:69826271-69826290 None:intergenic 30.0%
GATCTTTATATGGACAATGA+TGG - chr4_4:69826283-69826302 None:intergenic 30.0%
! TATTTTGCACTTTGTTGAAG+TGG + chr4_4:69826321-69826340 Msa0699200:intron 30.0%
TTGTTGAAGTGGTTCTTATA+AGG + chr4_4:69826332-69826351 Msa0699200:intron 30.0%
GGTTCTTATAAGGATTATGT+TGG + chr4_4:69826342-69826361 Msa0699200:intron 30.0%
GGCAGAATAAGAAAGAAAAT+TGG + chr4_4:69826519-69826538 Msa0699200:intron 30.0%
AATACTTAACAAGTACATCC+AGG - chr4_4:69826668-69826687 None:intergenic 30.0%
GATACACTACCAGTTTAAAA+AGG + chr4_4:69827545-69827564 Msa0699200:three_prime_UTR 30.0%
! GGTGTTAAACCTTTTTAAAC+TGG - chr4_4:69827557-69827576 None:intergenic 30.0%
TTTCCACTGAATTCAGGATA+TGG - chr4_4:69824940-69824959 None:intergenic 35.0%
AACTCATTTCCACTGAATTC+AGG - chr4_4:69824946-69824965 None:intergenic 35.0%
ATGTTGTTACGGAAATCGAA+TGG - chr4_4:69825027-69825046 None:intergenic 35.0%
! TTCTCCTTTTGTACAAGAAC+TGG - chr4_4:69825076-69825095 None:intergenic 35.0%
ATGTAGAAGTCCAAAACTCA+AGG - chr4_4:69825131-69825150 None:intergenic 35.0%
AGTTCCATGTGAATTAACAG+TGG + chr4_4:69825195-69825214 Msa0699200:CDS 35.0%
TGTGATAAAATTGTAGGCAC+TGG + chr4_4:69825238-69825257 Msa0699200:CDS 35.0%
TGTTAAGGGACAGCTTATTA+AGG + chr4_4:69825270-69825289 Msa0699200:CDS 35.0%
AATGTTAGGCACATTATGTG+GGG + chr4_4:69825533-69825552 Msa0699200:intron 35.0%
AAGCGCAATTTCTACAACAT+TGG - chr4_4:69825706-69825725 None:intergenic 35.0%
AAACAAGTACCTGTAAGCAT+AGG - chr4_4:69826068-69826087 None:intergenic 35.0%
!!! TTATGTTGGCCTTTTGTCTT+CGG + chr4_4:69826356-69826375 Msa0699200:intron 35.0%
AGGATGAAGTAATGGTTACT+TGG + chr4_4:69826400-69826419 Msa0699200:intron 35.0%
ATGACCTATCTCTTTAAACC+TGG + chr4_4:69826647-69826666 Msa0699200:intron 35.0%
ACATCCAGGTTTAAAGAGAT+AGG - chr4_4:69826654-69826673 None:intergenic 35.0%
AAGCAAGCAAAGTGTGTTAA+TGG + chr4_4:69826863-69826882 Msa0699200:intron 35.0%
TGATATGGATCTGTCAAAAC+CGG - chr4_4:69827027-69827046 None:intergenic 35.0%
! GCATCAATTTTTCTTAGCCA+AGG + chr4_4:69827127-69827146 Msa0699200:intron 35.0%
AACCAGGTATAAATTCACCT+TGG - chr4_4:69827147-69827166 None:intergenic 35.0%
!!! TTTATACCTGGTTTTGATGC+AGG + chr4_4:69827154-69827173 Msa0699200:intron 35.0%
AAGCATGATTTACAACTCCA+TGG + chr4_4:69827233-69827252 Msa0699200:exon 35.0%
TTACCTTCCTTGAATTTCCT+TGG + chr4_4:69827264-69827283 Msa0699200:three_prime_UTR 35.0%
! GCTCTAGATCACATTGATAA+AGG + chr4_4:69827382-69827401 Msa0699200:three_prime_UTR 35.0%
ATCATCATCAACTTCCACAT+TGG + chr4_4:69827448-69827467 Msa0699200:three_prime_UTR 35.0%
AATAACCATGTCATCCAATG+TGG - chr4_4:69827465-69827484 None:intergenic 35.0%
TTCAGTGGAAATGAGTTCAC+TGG + chr4_4:69824949-69824968 Msa0699200:CDS 40.0%
ACCACCAGTTCTTGTACAAA+AGG + chr4_4:69825069-69825088 Msa0699200:CDS 40.0%
! TCCTTTTGTACAAGAACTGG+TGG - chr4_4:69825073-69825092 None:intergenic 40.0%
AAGCCACTTACATTTCGTGT+TGG + chr4_4:69825601-69825620 Msa0699200:intron 40.0%
ACACCAACACGAAATGTAAG+TGG - chr4_4:69825607-69825626 None:intergenic 40.0%
! CTTACATTTCGTGTTGGTGT+TGG + chr4_4:69825607-69825626 Msa0699200:intron 40.0%
TATAGACCAGCGAGAAAATG+TGG + chr4_4:69825680-69825699 Msa0699200:intron 40.0%
TAGAAATTGCGCTTGTGACA+CGG + chr4_4:69825712-69825731 Msa0699200:intron 40.0%
GAGCATGGCATATATATCAG+TGG - chr4_4:69825966-69825985 None:intergenic 40.0%
GTTATCAAAGGATGGGATGT+AGG + chr4_4:69826017-69826036 Msa0699200:CDS 40.0%
!! GTAGGCATTTTAGGAGATGA+TGG + chr4_4:69826035-69826054 Msa0699200:CDS 40.0%
TTGAAGCTTCCTCCAGAATT+TGG + chr4_4:69826182-69826201 Msa0699200:CDS 40.0%
CTTCCTCCAGAATTTGGATA+TGG + chr4_4:69826188-69826207 Msa0699200:CDS 40.0%
CTTGAGCCATATCCAAATTC+TGG - chr4_4:69826197-69826216 None:intergenic 40.0%
GAATTTGGATATGGCTCAAG+AGG + chr4_4:69826197-69826216 Msa0699200:CDS 40.0%
!! GTCACTCTAGGATGAAGTAA+TGG + chr4_4:69826392-69826411 Msa0699200:intron 40.0%
TTAGGATGAAGAGAAGGAAG+TGG + chr4_4:69826498-69826517 Msa0699200:intron 40.0%
GATTAAAGGATGTGCAGTGT+AGG - chr4_4:69826788-69826807 None:intergenic 40.0%
CATGTGTGTAAGTGTCATGT+CGG - chr4_4:69826969-69826988 None:intergenic 40.0%
AGCCAAGGTGAATTTATACC+TGG + chr4_4:69827142-69827161 Msa0699200:intron 40.0%
TCTCCAAGGAAATTCAAGGA+AGG - chr4_4:69827270-69827289 None:intergenic 40.0%
CCTTGAATTTCCTTGGAGAT+CGG + chr4_4:69827271-69827290 Msa0699200:three_prime_UTR 40.0%
AACTTCCACATTGGATGACA+TGG + chr4_4:69827457-69827476 Msa0699200:three_prime_UTR 40.0%
TGGCCATATCCTGAATTCAG+TGG + chr4_4:69824934-69824953 Msa0699200:CDS 45.0%
TCACTGGCACCATATTCAGT+TGG + chr4_4:69824965-69824984 Msa0699200:CDS 45.0%
CACTGGCACCATATTCAGTT+GGG + chr4_4:69824966-69824985 Msa0699200:CDS 45.0%
AGGCAAGTCCCAACTGAATA+TGG - chr4_4:69824977-69824996 None:intergenic 45.0%
!!! GTTAAGTTTTTGGGGCTGCA+AGG - chr4_4:69825005-69825024 None:intergenic 45.0%
! ATAGGCCTCTCCTTGAGTTT+TGG + chr4_4:69825118-69825137 Msa0699200:CDS 45.0%
GAAGTCCAAAACTCAAGGAG+AGG - chr4_4:69825126-69825145 None:intergenic 45.0%
GCTGTTGCAGTGGGTATTAT+TGG - chr4_4:69825166-69825185 None:intergenic 45.0%
GGAGCCACTGTTAATTCACA+TGG - chr4_4:69825202-69825221 None:intergenic 45.0%
GAATTAACAGTGGCTCCTTC+AGG + chr4_4:69825205-69825224 Msa0699200:CDS 45.0%
TCACAATAGGAAAGGCCTGA+AGG - chr4_4:69825223-69825242 None:intergenic 45.0%
TATGTGGGGAGATTGGAGAA+TGG + chr4_4:69825547-69825566 Msa0699200:intron 45.0%
! GAAATGTAAGTGGCTTGCCA+CGG - chr4_4:69825597-69825616 None:intergenic 45.0%
!! ATTTCGTGTTGGTGTTGGAG+AGG + chr4_4:69825612-69825631 Msa0699200:intron 45.0%
! GGATGGGATGTAGGCATTTT+AGG + chr4_4:69826026-69826045 Msa0699200:CDS 45.0%
GGAATTCCTCCTATGCTTAC+AGG + chr4_4:69826056-69826075 Msa0699200:CDS 45.0%
CAAGTACCTGTAAGCATAGG+AGG - chr4_4:69826065-69826084 None:intergenic 45.0%
GAGCCATATCCAAATTCTGG+AGG - chr4_4:69826194-69826213 None:intergenic 45.0%
TCAAGAGGAGCTGGTTGTAA+AGG + chr4_4:69826212-69826231 Msa0699200:intron 45.0%
TAGCACCAACCGAAGACAAA+AGG - chr4_4:69826368-69826387 None:intergenic 45.0%
!! TGTCTTCGGTTGGTGCTAAT+AGG + chr4_4:69826370-69826389 Msa0699200:intron 45.0%
! TGGTGCTAATAGGTCACTCT+AGG + chr4_4:69826380-69826399 Msa0699200:intron 45.0%
GTGGCATTAGGATGAAGAGA+AGG + chr4_4:69826492-69826511 Msa0699200:intron 45.0%
CATGTCAAGTAGCTACTAGC+TGG - chr4_4:69826630-69826649 None:intergenic 45.0%
CACAACACACGACACTGATA+TGG - chr4_4:69827042-69827061 None:intergenic 45.0%
CATGAACCTGCATCAAAACC+AGG - chr4_4:69827163-69827182 None:intergenic 45.0%
!! TCGAATAAGAGTACCGCATC+GGG - chr4_4:69827196-69827215 None:intergenic 45.0%
!! GTCGAATAAGAGTACCGCAT+CGG - chr4_4:69827197-69827216 None:intergenic 45.0%
GGAAGGTAATTTGACTGCCA+TGG - chr4_4:69827253-69827272 None:intergenic 45.0%
CCGATCTCCAAGGAAATTCA+AGG - chr4_4:69827274-69827293 None:intergenic 45.0%
!!! AAGTTTTTGGGGCTGCAAGG+AGG - chr4_4:69825002-69825021 None:intergenic 50.0%
CAAGAACTGGTGGTTGCTGT+TGG - chr4_4:69825063-69825082 None:intergenic 50.0%
!! AATTGTAGGCACTGGTCCTC+AGG + chr4_4:69825246-69825265 Msa0699200:CDS 50.0%
ACTGGTCCTCAGGCTGTTAA+GGG + chr4_4:69825256-69825275 Msa0699200:CDS 50.0%
GGCACATTATGTGGGGAGAT+TGG + chr4_4:69825540-69825559 Msa0699200:intron 50.0%
! CATTGGCCACATTTTCTCGC+TGG - chr4_4:69825689-69825708 None:intergenic 50.0%
AGAGGAGCTGGTTGTAAAGG+AGG + chr4_4:69826215-69826234 Msa0699200:intron 50.0%
!!! GTTGGCCTTTTGTCTTCGGT+TGG + chr4_4:69826360-69826379 Msa0699200:intron 50.0%
AGGATGTGCAGTGTAGGACA+TGG - chr4_4:69826782-69826801 None:intergenic 50.0%
! ATGTGTCATTCCTCCCGATG+CGG + chr4_4:69827180-69827199 Msa0699200:CDS 50.0%
!! AATAAGAGTACCGCATCGGG+AGG - chr4_4:69827193-69827212 None:intergenic 50.0%
AATCTCGGTTCCGATCTCCA+AGG - chr4_4:69827284-69827303 None:intergenic 50.0%
GCTTCAGCTGCTGTTGCAGT+GGG - chr4_4:69825175-69825194 None:intergenic 55.0%
TGCTTCAGCTGCTGTTGCAG+TGG - chr4_4:69825176-69825195 None:intergenic 55.0%
CACTGGTCCTCAGGCTGTTA+AGG + chr4_4:69825255-69825274 Msa0699200:CDS 55.0%
AGCTGTCCCTTAACAGCCTG+AGG - chr4_4:69825265-69825284 None:intergenic 55.0%
TTCGACAGCAGCTACAACCG+TGG + chr4_4:69825577-69825596 Msa0699200:intron 55.0%
TTGCGCTTGTGACACGGTTC+TGG + chr4_4:69825718-69825737 Msa0699200:intron 55.0%
GGATATGGCTCAAGAGGAGC+TGG + chr4_4:69826203-69826222 Msa0699200:CDS 55.0%
! TTTGGGGCTGCAAGGAGGTG+AGG - chr4_4:69824997-69825016 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 69824869 69827583 69824869 ID=Msa0699200;Name=Msa0699200
chr4_4 mRNA 69824869 69827583 69824869 ID=Msa0699200-mRNA-1;Parent=Msa0699200;Name=Msa0699200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.25|0.4|1|0.5|0.2|5|343|198
chr4_4 exon 69824869 69825057 69824869 ID=Msa0699200-mRNA-1:exon:21002;Parent=Msa0699200-mRNA-1
chr4_4 exon 69825067 69825291 69825067 ID=Msa0699200-mRNA-1:exon:21003;Parent=Msa0699200-mRNA-1
chr4_4 exon 69826017 69826077 69826017 ID=Msa0699200-mRNA-1:exon:21004;Parent=Msa0699200-mRNA-1
chr4_4 exon 69826168 69826224 69826168 ID=Msa0699200-mRNA-1:exon:21005;Parent=Msa0699200-mRNA-1
chr4_4 exon 69827176 69827583 69827176 ID=Msa0699200-mRNA-1:exon:21006;Parent=Msa0699200-mRNA-1
chr4_4 CDS 69824869 69825057 69824869 ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4 CDS 69825067 69825291 69825067 ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4 CDS 69826017 69826077 69826017 ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4 CDS 69826168 69826224 69826168 ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4 CDS 69827176 69827240 69827176 ID=Msa0699200-mRNA-1:cds;Parent=Msa0699200-mRNA-1
chr4_4 three_prime_UTR 69827241 69827583 69827241 ID=Msa0699200-mRNA-1:three_prime_utr;Parent=Msa0699200-mRNA-1
Gene Sequence

>Msa0699200

ATGTCATGGAACAATATGAACCACAATATCCATATTACTACTAACTTACTAAAAAAAGGGATGCTTGGCCATATCCTGAATTCAGTGGAAATGAGTTCACTGGCACCATATTCAGTTGGGACTTGCCTCACCTCCTTGCAGCCCCAAAAACTTAACCATTCGATTTCCGTAACAACATGTTCTGTTCAACAACCACCAGTTCTTGTACAAAAGGAGAATCAATTGAAAAGAAGAGAAGCAATAGGCCTCTCCTTGAGTTTTGGACTTCTACATTCTTTATTGCAACCAATAATACCCACTGCAACAGCAGCTGAAGCAGTTCCATGTGAATTAACAGTGGCTCCTTCAGGCCTTTCCTATTGTGATAAAATTGTAGGCACTGGTCCTCAGGCTGTTAAGGGACAGCTTATTAAGGTTATCAAAGGATGGGATGTAGGCATTTTAGGAGATGATGGAATTCCTCCTATGCTTACAGGAGGTAAACGTACATTGAAGCTTCCTCCAGAATTTGGATATGGCTCAAGAGGAGCTGGTTCATGTGTCATTCCTCCCGATGCGGTACTCTTATTCGACGTAGAGTTTGTCAGCAAAGCATGA

Protein sequence

>Msa0699200

MSWNNMNHNIHITTNLLKKGMLGHILNSVEMSSLAPYSVGTCLTSLQPQKLNHSISVTTCSVQQPPVLVQKENQLKRREAIGLSLSFGLLHSLLQPIIPTATAAEAVPCELTVAPSGLSYCDKIVGTGPQAVKGQLIKVIKGWDVGILGDDGIPPMLTGGKRTLKLPPEFGYGSRGAGSCVIPPDAVLLFDVEFVSKA*