Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664100 | XP_013454559.1 | 89.789 | 568 | 58 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664100 | sp|Q8LPJ4|AB2E_ARATH | 81.547 | 569 | 104 | 1 | 1 | 568 | 5 | 573 | 0.0 | 972 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664100 | A0A072URT6 | 89.789 | 568 | 58 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1056 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018610 | Msa0664100 | -0.809278 | 2.047869e-50 | -8.615850e-47 |
| Msa0064490 | Msa0664100 | -0.800774 | 1.230838e-48 | -8.615850e-47 |
| Msa0076590 | Msa0664100 | -0.808913 | 2.451131e-50 | -8.615850e-47 |
| Msa0079100 | Msa0664100 | -0.802701 | 4.951432e-49 | -8.615850e-47 |
| Msa0619960 | Msa0664100 | -0.800466 | 1.422614e-48 | -8.615850e-47 |
| Msa0620050 | Msa0664100 | -0.803335 | 3.660828e-49 | -8.615850e-47 |
| Msa0644220 | Msa0664100 | -0.803881 | 2.820790e-49 | -8.615850e-47 |
| Msa0664100 | Msa0664140 | 0.979342 | 9.276897e-148 | -8.615850e-47 |
| Msa0664100 | Msa0684030 | -0.808657 | 2.780955e-50 | -8.615850e-47 |
| Msa0664100 | Msa0699200 | -0.800951 | 1.132693e-48 | -8.615850e-47 |
| Msa0664100 | Msa0711860 | -0.802141 | 6.459562e-49 | -8.615850e-47 |
| Msa0664100 | Msa0713570 | -0.802866 | 4.577907e-49 | -8.615850e-47 |
| Msa0664100 | Msa0744010 | -0.804852 | 1.770315e-49 | -8.615850e-47 |
| Msa0664100 | Msa0745010 | -0.817168 | 3.792045e-52 | -8.615850e-47 |
| Msa0664100 | Msa0746830 | 0.805932 | 1.051532e-49 | -8.615850e-47 |
| Msa0664100 | Msa0755550 | -0.806134 | 9.531552e-50 | -8.615850e-47 |
| Msa0664100 | Msa0784780 | -0.810845 | 9.414646e-51 | -8.615850e-47 |
| Msa0664100 | Msa0788160 | -0.806620 | 7.528052e-50 | -8.615850e-47 |
| Msa0664100 | Msa0853200 | -0.813000 | 3.194491e-51 | -8.615850e-47 |
| Msa0664100 | Msa0858250 | -0.805948 | 1.043049e-49 | -8.615850e-47 |
| Msa0664100 | Msa0868510 | -0.801193 | 1.010411e-48 | -8.615850e-47 |
| Msa0664100 | Msa0882480 | -0.802629 | 5.123142e-49 | -8.615850e-47 |
| Msa0664100 | Msa0941420 | -0.800557 | 1.362660e-48 | -8.615850e-47 |
| Msa0664100 | Msa0973010 | -0.810010 | 1.425802e-50 | -8.615850e-47 |
| Msa0664100 | Msa0978540 | -0.808505 | 2.997343e-50 | -8.615850e-47 |
| Msa0664100 | Msa0978550 | -0.802338 | 5.881740e-49 | -8.615850e-47 |
| Msa0664100 | Msa0995130 | -0.806582 | 7.671299e-50 | -8.615850e-47 |
| Msa0664100 | Msa1037440 | -0.823408 | 1.407825e-53 | -8.615850e-47 |
| Msa0664100 | Msa1044460 | 0.975584 | 3.195122e-140 | -8.615850e-47 |
| Msa0664100 | Msa1058550 | -0.812378 | 4.368931e-51 | -8.615850e-47 |
| Msa0664100 | Msa1091400 | -0.808579 | 2.889878e-50 | -8.615850e-47 |
| Msa0664100 | Msa1095880 | -0.809898 | 1.506612e-50 | -8.615850e-47 |
| Msa0664100 | Msa1123260 | -0.800020 | 1.752752e-48 | -8.615850e-47 |
| Msa0664100 | Msa1156100 | -0.801045 | 1.083395e-48 | -8.615850e-47 |
| Msa0664100 | Msa1156430 | -0.800510 | 1.393589e-48 | -8.615850e-47 |
| Msa0664100 | Msa1203320 | -0.807221 | 5.618741e-50 | -8.615850e-47 |
| Msa0664100 | Msa1222900 | -0.801238 | 9.894117e-49 | -8.615850e-47 |
| Msa0664100 | Msa1269730 | -0.811615 | 6.406994e-51 | -8.615850e-47 |
| Msa0664100 | Msa1280520 | -0.800976 | 1.119560e-48 | -8.615850e-47 |
| Msa0664100 | Msa1287100 | -0.811565 | 6.569528e-51 | -8.615850e-47 |
| Msa0664100 | Msa1295480 | -0.826564 | 2.531548e-54 | -8.615850e-47 |
| Msa0664100 | Msa1330080 | -0.821835 | 3.269033e-53 | -8.615850e-47 |
| Msa0664100 | Msa1432360 | 0.813912 | 2.012979e-51 | -8.615850e-47 |
| Msa0664100 | Msa1462700 | -0.812720 | 3.678296e-51 | -8.615850e-47 |
| Msa0122930 | Msa0664100 | -0.800012 | 1.759479e-48 | -8.615850e-47 |
| Msa0127510 | Msa0664100 | -0.809621 | 1.728547e-50 | -8.615850e-47 |
| Msa0175210 | Msa0664100 | -0.810908 | 9.121650e-51 | -8.615850e-47 |
| Msa0211590 | Msa0664100 | -0.802978 | 4.340163e-49 | -8.615850e-47 |
| Msa0224180 | Msa0664100 | -0.804126 | 2.509094e-49 | -8.615850e-47 |
| Msa0382050 | Msa0664100 | -0.812842 | 3.458590e-51 | -8.615850e-47 |
| Msa0390760 | Msa0664100 | -0.804391 | 2.208933e-49 | -8.615850e-47 |
| Msa0393880 | Msa0664100 | -0.808629 | 2.818927e-50 | -8.615850e-47 |
| Msa0397420 | Msa0664100 | -0.819546 | 1.097201e-52 | -8.615850e-47 |
| Msa0431550 | Msa0664100 | -0.807229 | 5.598067e-50 | -8.615850e-47 |
| Msa0474660 | Msa0664100 | -0.801741 | 7.802523e-49 | -8.615850e-47 |
| Msa0259570 | Msa0664100 | -0.810922 | 9.060643e-51 | -8.615850e-47 |
| Msa0305630 | Msa0664100 | -0.804246 | 2.368124e-49 | -8.615850e-47 |
| Msa0319220 | Msa0664100 | 0.800072 | 1.710509e-48 | -8.615850e-47 |
| Msa0341950 | Msa0664100 | -0.801589 | 8.384894e-49 | -8.615850e-47 |
| Msa0347280 | Msa0664100 | -0.832996 | 6.873119e-56 | -8.615850e-47 |
| Msa0489330 | Msa0664100 | -0.831203 | 1.907237e-55 | -8.615850e-47 |
| Msa0506700 | Msa0664100 | -0.802304 | 5.977340e-49 | -8.615850e-47 |
| Msa0528180 | Msa0664100 | 0.807395 | 5.160832e-50 | -8.615850e-47 |
| Msa0566090 | Msa0664100 | -0.803753 | 2.998849e-49 | -8.615850e-47 |
| Msa0586230 | Msa0664100 | 0.945449 | 2.990109e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664100 | MtrunA17_Chr4g0002101 | 89.789 | 568 | 58 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1056 |
| Msa0664100 | MtrunA17_Chr1g0211721 | 85.965 | 570 | 78 | 2 | 1 | 568 | 5 | 574 | 0.0 | 1014 |
| Msa0664100 | MtrunA17_Chr1g0156551 | 83.509 | 570 | 92 | 2 | 1 | 568 | 82 | 651 | 0.0 | 988 |
| Msa0664100 | MtrunA17_Chr1g0156441 | 81.092 | 238 | 43 | 2 | 327 | 562 | 16 | 253 | 8.56e-135 | 397 |
| Msa0664100 | MtrunA17_Chr1g0156441 | 31.466 | 232 | 129 | 6 | 99 | 324 | 59 | 266 | 3.02e-25 | 105 |
| Msa0664100 | MtrunA17_Chr1g0156461 | 67.857 | 196 | 62 | 1 | 3 | 198 | 8 | 202 | 1.93e-92 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664100 | AT4G19210.1 | 81.547 | 569 | 104 | 1 | 1 | 568 | 5 | 573 | 0.0 | 972 |
| Msa0664100 | AT3G13640.1 | 72.583 | 569 | 153 | 2 | 1 | 568 | 5 | 571 | 0.0 | 870 |
| Msa0664100 | AT4G30300.1 | 64.571 | 175 | 60 | 2 | 350 | 522 | 1 | 175 | 6.30e-66 | 216 |
| Msa0664100 | AT4G30300.1 | 25.140 | 179 | 100 | 5 | 100 | 265 | 21 | 178 | 4.47e-11 | 62.8 |
Find 184 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAGTTGGAGCCAAATT+TGG | 0.165233 | 4_4:-3074346 | Msa0664100:CDS |
| CGTAATGTTGGTGATCTTTC+AGG | 0.171930 | 4_4:-3073125 | Msa0664100:CDS |
| TATCAACTTGCCGGAGAATT+TGG | 0.186930 | 4_4:-3074606 | Msa0664100:CDS |
| GTCCACTGCCCTTAGAATTT+TGG | 0.194239 | 4_4:-3074370 | Msa0664100:CDS |
| AATGCAACAACTCAACAATT+TGG | 0.207468 | 4_4:-3070036 | Msa0664100:CDS |
| CAGTTGAATATTGGTGGTTT+GGG | 0.226415 | 4_4:-3075043 | Msa0664100:five_prime_UTR |
| TCATATCTCTCTCATTGTTT+TGG | 0.229197 | 4_4:+3073192 | None:intergenic |
| CCTGAACTTGCCTTGAGTTT+TGG | 0.246863 | 4_4:+3072134 | None:intergenic |
| ACTTTCCAGCCAAAATTCTA+AGG | 0.272957 | 4_4:+3074361 | None:intergenic |
| ATTATCTTTCAGTTGAATAT+TGG | 0.278478 | 4_4:-3075052 | Msa0664100:intron |
| CAACAGAAAATCTTAGGTTT+CGG | 0.282822 | 4_4:-3072690 | Msa0664100:CDS |
| TTGTTCCAACAGAAAATCTT+AGG | 0.290058 | 4_4:-3072696 | Msa0664100:CDS |
| ACAGTGAAACGACCCAAATT+TGG | 0.292894 | 4_4:+3074333 | None:intergenic |
| GATGAATTCTTTCATGTAAC+AGG | 0.293045 | 4_4:+3071818 | None:intergenic |
| TCAGTTGAATATTGGTGGTT+TGG | 0.296899 | 4_4:-3075044 | Msa0664100:intron |
| TCATCACATCTGATATAAAC+TGG | 0.305491 | 4_4:+3071779 | None:intergenic |
| AACAGAAAATCTTAGGTTTC+GGG | 0.307649 | 4_4:-3072689 | Msa0664100:CDS |
| ACTAGTTACAGAGCGGTAAA+AGG | 0.311457 | 4_4:-3075434 | None:intergenic |
| GACTTTATTTGCTGTTTGTA+TGG | 0.317741 | 4_4:-3072793 | Msa0664100:CDS |
| ACTAGAAAGGTGTGCCTTGC+CGG | 0.329398 | 4_4:+3075354 | None:intergenic |
| TCAAGGTAATAAACTAAAAC+TGG | 0.340272 | 4_4:+3070010 | None:intergenic |
| GGTCATTGCTAAGGCATAAT+AGG | 0.365075 | 4_4:-3072980 | Msa0664100:intron |
| GGCCGAAATCATACCAAAAC+TGG | 0.365388 | 4_4:+3069689 | None:intergenic |
| CTGTGTAGCTTAAAAGTATT+AGG | 0.366567 | 4_4:+3074557 | None:intergenic |
| GAACCAAGTTTGTTGATCCT+TGG | 0.372441 | 4_4:+3070217 | None:intergenic |
| AACCAAGTTTGTTGATCCTT+GGG | 0.373348 | 4_4:+3070218 | None:intergenic |
| CTTTCGAGATGAGAGTTTGA+AGG | 0.373390 | 4_4:-3074145 | Msa0664100:intron |
| TAACAGTTGATTTGAACTTT+GGG | 0.374527 | 4_4:+3071845 | None:intergenic |
| CTAACAGTTGATTTGAACTT+TGG | 0.376761 | 4_4:+3071844 | None:intergenic |
| CGCCCAAGGATCAACAAACT+TGG | 0.378870 | 4_4:-3070220 | Msa0664100:CDS |
| CGTTGCCCTGTCGTCATAAC+CGG | 0.380336 | 4_4:-3074946 | Msa0664100:intron |
| ATGTTGCTCATGGCCAGTTT+TGG | 0.381147 | 4_4:-3069702 | Msa0664100:CDS |
| GATAGAGAGCAAAAGCTTGC+TGG | 0.383710 | 4_4:-3070187 | Msa0664100:CDS |
| TTGAGAAAGATGGCTTCAAC+AGG | 0.384287 | 4_4:+3069803 | None:intergenic |
| TGTAGTTGGAGGAGAATTTA+CGG | 0.386210 | 4_4:-3072106 | Msa0664100:CDS |
| ATTGATCACATTCATAAAAC+GGG | 0.386877 | 4_4:-3073242 | Msa0664100:CDS |
| AATTAAGATTATCAACTTGC+CGG | 0.388066 | 4_4:-3074615 | Msa0664100:CDS |
| GGAAAGTTGGAGCCAAATTT+GGG | 0.390741 | 4_4:-3074345 | Msa0664100:CDS |
| GTCAAAATTTCCTGCCAGTC+AGG | 0.392453 | 4_4:+3074207 | None:intergenic |
| GCTTATTACACAGTTTATAT+CGG | 0.395148 | 4_4:-3069657 | Msa0664100:three_prime_UTR |
| TGCAGCAATAATACGCTGTT+CGG | 0.396922 | 4_4:+3070597 | None:intergenic |
| TGACAGAGTTATTGTTTATG+AGG | 0.398914 | 4_4:-3070491 | Msa0664100:CDS |
| CAACAGCAATGGCAAACCTT+TGG | 0.402310 | 4_4:+3073093 | None:intergenic |
| GACATCAAATAAATTAAAAC+TGG | 0.409077 | 4_4:+3069841 | None:intergenic |
| AGCAACATCGCTAAGTATTA+CGG | 0.412171 | 4_4:+3069717 | None:intergenic |
| CCGAGGCCGGGGAAAGTGCT+TGG | 0.412378 | 4_4:-3074420 | Msa0664100:CDS |
| ACTTTCCCCGGCCTCGGAAC+CGG | 0.412394 | 4_4:+3074426 | None:intergenic |
| GGGAAAGTGCTTGGTTTGGT+TGG | 0.414362 | 4_4:-3074411 | Msa0664100:CDS |
| AGTTGTGTATTATAGGTTGC+CGG | 0.415419 | 4_4:-3074445 | Msa0664100:intron |
| TATAATACAGGTTAGCTTCA+AGG | 0.416213 | 4_4:-3073273 | Msa0664100:intron |
| ATCCTTGGGCGGAAATTAGT+TGG | 0.419970 | 4_4:+3070232 | None:intergenic |
| TGCAAAGAAAACAGCCTTTG+TGG | 0.420036 | 4_4:-3070548 | Msa0664100:CDS |
| CCAAAACTCAAGGCAAGTTC+AGG | 0.420940 | 4_4:-3072134 | Msa0664100:CDS |
| AGGTTGCCGGTTCCGAGGCC+GGG | 0.422004 | 4_4:-3074432 | Msa0664100:CDS |
| GCCGGGGAAAGTGCTTGGTT+TGG | 0.422861 | 4_4:-3074415 | Msa0664100:CDS |
| ATGCAACAACTCAACAATTT+GGG | 0.423564 | 4_4:-3070035 | Msa0664100:CDS |
| GGAATTAATATCTTCTTGTC+TGG | 0.423856 | 4_4:-3072721 | Msa0664100:CDS |
| TCTATATCCATTGAGAAAGA+TGG | 0.425133 | 4_4:+3069793 | None:intergenic |
| ATAATCTTAATTGCTTCAAA+AGG | 0.425895 | 4_4:+3074626 | None:intergenic |
| GGAAAGTGCTTGGTTTGGTT+GGG | 0.426497 | 4_4:-3074410 | Msa0664100:CDS |
| TATTGATCACATTCATAAAA+CGG | 0.431274 | 4_4:-3073243 | Msa0664100:CDS |
| GTTTCCTTATGTCTTTGTCT+TGG | 0.432752 | 4_4:-3071688 | Msa0664100:CDS |
| GGATGACTCTCTTACCTTCA+AGG | 0.434243 | 4_4:-3072668 | Msa0664100:intron |
| TAGGTTGCCGGTTCCGAGGC+CGG | 0.434876 | 4_4:-3074433 | Msa0664100:CDS |
| ATTCCTTCTCTGACTGAGAA+AGG | 0.437002 | 4_4:+3072739 | None:intergenic |
| ATAGATTATTTATACCTTGA+AGG | 0.440136 | 4_4:+3072654 | None:intergenic |
| GTAATGTTGGTGATCTTTCA+GGG | 0.441278 | 4_4:-3073124 | Msa0664100:CDS |
| TCTCCACAATCACTGCTGAC+TGG | 0.442692 | 4_4:-3070439 | Msa0664100:CDS |
| ATCTTTCAGTTGAATATTGG+TGG | 0.443272 | 4_4:-3075049 | Msa0664100:intron |
| TTACCTTGATGACTAAGTTC+AGG | 0.448177 | 4_4:-3070155 | Msa0664100:intron |
| TCTCAGATTGTTGTTATGCT+TGG | 0.451315 | 4_4:-3072081 | Msa0664100:CDS |
| GTTGTTATGCTTGGTGAGAA+TGG | 0.453138 | 4_4:-3072072 | Msa0664100:CDS |
| TGAACACGATCTTAGTGTCT+TGG | 0.458360 | 4_4:-3072827 | Msa0664100:CDS |
| CTTATGTCTTTGTCTTGGAA+AGG | 0.458540 | 4_4:-3071683 | Msa0664100:intron |
| TGGATGTGGTATTTGTGTTA+AGG | 0.458616 | 4_4:-3074758 | Msa0664100:intron |
| AAAGGTGTGCCTTGCCGGAC+GGG | 0.459595 | 4_4:+3075359 | None:intergenic |
| AAAGACACCACTCATAGATA+TGG | 0.460544 | 4_4:-3074581 | Msa0664100:CDS |
| TGTTGCATTGGCAAAAGAGC+AGG | 0.462602 | 4_4:+3070050 | None:intergenic |
| GTTTGCAGAACCCTCCTGAC+TGG | 0.466184 | 4_4:-3074221 | Msa0664100:intron |
| CTCCACAATCACTGCTGACT+GGG | 0.473425 | 4_4:-3070438 | Msa0664100:CDS |
| GCAGAACCCTCCTGACTGGC+AGG | 0.473883 | 4_4:-3074217 | Msa0664100:intron |
| GTTGAAGCCATCTTTCTCAA+TGG | 0.474658 | 4_4:-3069800 | Msa0664100:CDS |
| TATGGAACACCTGGTGCATA+TGG | 0.475475 | 4_4:-3072775 | Msa0664100:CDS |
| ACGCGTATTGCCATTGTCAA+TGG | 0.480880 | 4_4:-3075012 | Msa0664100:CDS |
| CTCACATCAAGATAACTAGA+AGG | 0.483153 | 4_4:+3073032 | None:intergenic |
| TTTGCAGTACAGTCAATTGA+AGG | 0.483786 | 4_4:+3070463 | None:intergenic |
| GCCGTCGCACCTTTCCCGTC+CGG | 0.484145 | 4_4:-3075373 | Msa0664100:five_prime_UTR |
| CTCTCTCTCTATTCACCGAC+AGG | 0.488866 | 4_4:-3075322 | Msa0664100:intron |
| AACTTTGGGTTAATTGTCTG+AGG | 0.488966 | 4_4:+3071859 | None:intergenic |
| ACCAAACCAAGCACTTTCCC+CGG | 0.489846 | 4_4:+3074414 | None:intergenic |
| ATCATACCGGTTATGACGAC+AGG | 0.490261 | 4_4:+3074940 | None:intergenic |
| TGAAAGCTGCCCAAGTTGTC+CGG | 0.491384 | 4_4:-3073001 | Msa0664100:CDS |
| TGCTGTTTGTATGGAACACC+TGG | 0.492329 | 4_4:-3072784 | Msa0664100:CDS |
| TGTTGCATTGGCAAAAGAGC+AGG | 0.493165 | 4_4:+3069883 | None:intergenic |
| GTGTCTTTGTCCAAATTCTC+CGG | 0.498181 | 4_4:+3074596 | None:intergenic |
| TATAGGAAGATTGTGTATTG+AGG | 0.500669 | 4_4:-3074827 | Msa0664100:intron |
| ATAAATTATGAGAGCTGAGA+TGG | 0.501113 | 4_4:+3069574 | None:intergenic |
| TTGTTATGCTTGGTGAGAAT+GGG | 0.504018 | 4_4:-3072071 | Msa0664100:CDS |
| AAGTTCAGGCTTCGTGTAGT+TGG | 0.505597 | 4_4:-3072120 | Msa0664100:CDS |
| GGTTGCCGGTTCCGAGGCCG+GGG | 0.505721 | 4_4:-3074431 | Msa0664100:CDS |
| AAACAATGAGAGAGATATGA+AGG | 0.508578 | 4_4:-3073189 | Msa0664100:CDS |
| CACATTCATAAAACGGGGCA+AGG | 0.508774 | 4_4:-3073236 | Msa0664100:CDS |
| TAACACATACTGATAAGAAA+AGG | 0.514344 | 4_4:+3070410 | None:intergenic |
| GACAACATTCATCCGTATGC+TGG | 0.519437 | 4_4:-3072040 | Msa0664100:intron |
| TTCAGGCTTCGTGTAGTTGG+AGG | 0.519982 | 4_4:-3072117 | Msa0664100:CDS |
| TAAAACGGGGCAAGGGAACG+TGG | 0.521293 | 4_4:-3073228 | Msa0664100:CDS |
| TACACAGTTTATATCGGTCA+TGG | 0.523785 | 4_4:-3069651 | Msa0664100:three_prime_UTR |
| TCAGATCCACCTATAGTGTC+AGG | 0.525068 | 4_4:+3071916 | None:intergenic |
| AGCCAAAATTCTAAGGGCAG+TGG | 0.528739 | 4_4:+3074368 | None:intergenic |
| ATAGAGAGCAAAAGCTTGCT+GGG | 0.529331 | 4_4:-3070186 | Msa0664100:CDS |
| TCTATCAGATAAATGTCTGC+AGG | 0.531946 | 4_4:+3070643 | None:intergenic |
| TGTGCCTTGCCGGACGGGAA+AGG | 0.532065 | 4_4:+3075364 | None:intergenic |
| CGGCGCAATCGCAAGGAGAG+TGG | 0.533803 | 4_4:+3075392 | None:intergenic |
| CTTTCCAAGACAAAGACATA+AGG | 0.539595 | 4_4:+3071684 | None:intergenic |
| TTAGCAATGACCGGACAACT+TGG | 0.539932 | 4_4:+3072991 | None:intergenic |
| CGCACCTTTCCCGTCCGGCA+AGG | 0.539935 | 4_4:-3075368 | Msa0664100:five_prime_UTR |
| TCATTGAAACCTGACACTAT+AGG | 0.540340 | 4_4:-3071925 | Msa0664100:CDS |
| CAAGTTATAGATCGTAATGT+TGG | 0.541369 | 4_4:-3073137 | Msa0664100:CDS |
| GACAGAGTTATTGTTTATGA+GGG | 0.542830 | 4_4:-3070490 | Msa0664100:CDS |
| CATCACATCTGATATAAACT+GGG | 0.543431 | 4_4:+3071780 | None:intergenic |
| CTTCCTTTCTCAGTCAGAGA+AGG | 0.543896 | 4_4:-3072742 | Msa0664100:CDS |
| CCAAGCACTTTCCCCGGCCT+CGG | 0.544800 | 4_4:+3074420 | None:intergenic |
| GAAAGGTGTGCCTTGCCGGA+CGG | 0.547606 | 4_4:+3075358 | None:intergenic |
| ACATCCAGTGCACAATTCCT+CGG | 0.548548 | 4_4:+3074774 | None:intergenic |
| ATCCCAGTCAGCAGTGATTG+TGG | 0.548844 | 4_4:+3070436 | None:intergenic |
| ACTACTTATCGAACAGCTGA+TGG | 0.549716 | 4_4:-3071752 | Msa0664100:CDS |
| AAACCTGAACTTAGTCATCA+AGG | 0.550955 | 4_4:+3070152 | None:intergenic |
| GGTGCGACGGCGCAATCGCA+AGG | 0.553576 | 4_4:+3075385 | None:intergenic |
| AAAACGGGGCAAGGGAACGT+GGG | 0.554809 | 4_4:-3073227 | Msa0664100:CDS |
| AGAGGACGGTGAAACTAGAA+AGG | 0.558715 | 4_4:+3075341 | None:intergenic |
| TTGCTGCAAAAGTTATCAAG+AGG | 0.559789 | 4_4:-3070582 | Msa0664100:CDS |
| CTATCCGAGGAATTGTGCAC+TGG | 0.564876 | 4_4:-3074778 | Msa0664100:CDS |
| TGAGCTTCAGCAGTTTCATG+TGG | 0.568344 | 4_4:+3072189 | None:intergenic |
| AAATTGTTGAGATGTTGCAT+TGG | 0.572373 | 4_4:+3069871 | None:intergenic |
| CTTTCCAGCCAAAATTCTAA+GGG | 0.572535 | 4_4:+3074362 | None:intergenic |
| ATACTTAGCGATGTTGCTCA+TGG | 0.572848 | 4_4:-3069712 | Msa0664100:CDS |
| ATCCAACTAATTTCCGCCCA+AGG | 0.577928 | 4_4:-3070234 | Msa0664100:CDS |
| TGTGTAATAAGCAGATTCAC+TGG | 0.578646 | 4_4:+3069668 | None:intergenic |
| AAATTGTTGAGTTGTTGCAT+TGG | 0.580429 | 4_4:+3070038 | None:intergenic |
| CACTATAGGTGGATCTGATG+TGG | 0.580575 | 4_4:-3071911 | Msa0664100:CDS |
| AAGTTGTCCGGTCATTGCTA+AGG | 0.581006 | 4_4:-3072989 | Msa0664100:CDS |
| CGCAATCGCAAGGAGAGTGG+AGG | 0.581707 | 4_4:+3075395 | None:intergenic |
| TATTATGCCTTAGCAATGAC+CGG | 0.582030 | 4_4:+3072982 | None:intergenic |
| CAGTGCACAATTCCTCGGAT+AGG | 0.583504 | 4_4:+3074779 | None:intergenic |
| TTGTGTGAAATATTGAACTC+AGG | 0.583680 | 4_4:+3071883 | None:intergenic |
| AAAATTTCCTGCCAGTCAGG+AGG | 0.583757 | 4_4:+3074210 | None:intergenic |
| TCGGAATCAAGATGTGCACT+TGG | 0.586777 | 4_4:+3070616 | None:intergenic |
| TAGCAATGACCGGACAACTT+GGG | 0.588276 | 4_4:+3072992 | None:intergenic |
| ACTAAAAGAATACCAGCATA+CGG | 0.589186 | 4_4:+3072028 | None:intergenic |
| CATGCAGAGCATATGTTGGT+TGG | 0.591317 | 4_4:-3069757 | Msa0664100:CDS |
| ATCAGCTGTTCGATAAGTAG+TGG | 0.593241 | 4_4:+3071754 | None:intergenic |
| ATGGCGATAAACTTAATATG+TGG | 0.593735 | 4_4:+3069593 | None:intergenic |
| AGTTGAATATTGGTGGTTTG+GGG | 0.595891 | 4_4:-3075042 | Msa0664100:five_prime_UTR |
| GAGGAATTGTGCACTGGATG+TGG | 0.596595 | 4_4:-3074772 | Msa0664100:CDS |
| GCTACATGCAGAGCATATGT+TGG | 0.599972 | 4_4:-3069761 | Msa0664100:CDS |
| TAGGAGGGCAGCAACAGCAA+TGG | 0.601333 | 4_4:+3073082 | None:intergenic |
| AAATTTCCTGCCAGTCAGGA+GGG | 0.605918 | 4_4:+3074211 | None:intergenic |
| ATTATAGGTTGCCGGTTCCG+AGG | 0.606131 | 4_4:-3074437 | Msa0664100:intron |
| CAAGTTTGTTGATCCTTGGG+CGG | 0.607651 | 4_4:+3070221 | None:intergenic |
| CTGTCGGTGAATAGAGAGAG+AGG | 0.609135 | 4_4:+3075323 | None:intergenic |
| ATGCTTGGTGAGAATGGGAC+GGG | 0.610087 | 4_4:-3072066 | Msa0664100:CDS |
| TAATGTTGGTGATCTTTCAG+GGG | 0.618828 | 4_4:-3073123 | Msa0664100:CDS |
| GGTTGAGCATGATTTCATCA+TGG | 0.619459 | 4_4:-3070527 | Msa0664100:CDS |
| GCCGGACGGGAAAGGTGCGA+CGG | 0.621346 | 4_4:+3075372 | None:intergenic |
| GTGGCATCATTATTCAGTCA+AGG | 0.625338 | 4_4:+3069612 | None:intergenic |
| AAACGGGGCAAGGGAACGTG+GGG | 0.627128 | 4_4:-3073226 | Msa0664100:CDS |
| GCATCTGTCTCCATTGACAA+TGG | 0.633618 | 4_4:+3075002 | None:intergenic |
| GCAATCGCAAGGAGAGTGGA+GGG | 0.634318 | 4_4:+3075396 | None:intergenic |
| ACATTCATAAAACGGGGCAA+GGG | 0.634571 | 4_4:-3073235 | Msa0664100:CDS |
| TTGAAACCTGACACTATAGG+TGG | 0.643934 | 4_4:-3071922 | Msa0664100:CDS |
| GAAATCATGCTCAACCACAA+AGG | 0.644019 | 4_4:+3070534 | None:intergenic |
| CGGTGAATAGAGAGAGAGGA+CGG | 0.653776 | 4_4:+3075327 | None:intergenic |
| AATGTTGGTGATCTTTCAGG+GGG | 0.657975 | 4_4:-3073122 | Msa0664100:CDS |
| CCAACCATGACCAAAACTCA+AGG | 0.658017 | 4_4:-3072144 | Msa0664100:CDS |
| GAAGATTGCTTACCTATCCG+AGG | 0.658534 | 4_4:-3074791 | Msa0664100:CDS |
| GTTACGACTCCATATGCACC+AGG | 0.659399 | 4_4:+3072766 | None:intergenic |
| ATTAGGACCATATCTATGAG+TGG | 0.668366 | 4_4:+3074574 | None:intergenic |
| CAACAAACTTGGTTCAACCA+AGG | 0.671800 | 4_4:-3070209 | Msa0664100:CDS |
| GTTATCTTGATGTGAGACAG+AGG | 0.675184 | 4_4:-3073025 | Msa0664100:CDS |
| TATGCTTGGTGAGAATGGGA+CGG | 0.683302 | 4_4:-3072067 | Msa0664100:CDS |
| ATCACATCTGATATAAACTG+GGG | 0.688133 | 4_4:+3071781 | None:intergenic |
| TGAGAAAGATGGCTTCAACA+GGG | 0.694330 | 4_4:+3069804 | None:intergenic |
| TCATACCGGTTATGACGACA+GGG | 0.697152 | 4_4:+3074941 | None:intergenic |
| TTGATCACATTCATAAAACG+GGG | 0.709656 | 4_4:-3073241 | Msa0664100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTATAAAAAAAAAAAAAAA+AGG | + | chr4_4:3070676-3070695 | None:intergenic | 10.0% |
| !! | TTGTAAAAAAAAAAAATTAC+TGG | + | chr4_4:3070955-3070974 | None:intergenic | 10.0% |
| !! | ATTACATAATAATTGATAAA+TGG | + | chr4_4:3071006-3071025 | None:intergenic | 10.0% |
| !! | ATTTATCAATTATTATGTAA+TGG | - | chr4_4:3071005-3071024 | Msa0664100:intron | 10.0% |
| !!! | AAAATGTTTTTCAAAATTAA+AGG | + | chr4_4:3071511-3071530 | None:intergenic | 10.0% |
| !! | TATTCTTATAAATTAGATAT+TGG | - | chr4_4:3072655-3072674 | Msa0664100:intron | 10.0% |
| !! | GAATTCAATTAATATTTATA+TGG | + | chr4_4:3074112-3074131 | None:intergenic | 10.0% |
| !!! | TGAAATTTTATGTTAATGTT+TGG | - | chr4_4:3070075-3070094 | Msa0664100:intron | 15.0% |
| !!! | AAAAAAAAAAAGGCTAATTT+TGG | + | chr4_4:3070666-3070685 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTATACCG+TGG | - | chr4_4:3070677-3070696 | Msa0664100:intron | 15.0% |
| !! | TACAAAACGATATTAAATAA+AGG | + | chr4_4:3070861-3070880 | None:intergenic | 15.0% |
| !!! | GTTTTTCTGATTTTTTTTAT+TGG | - | chr4_4:3070979-3070998 | Msa0664100:intron | 15.0% |
| !! | TTCAATATATGTTATAATAC+AGG | - | chr4_4:3071683-3071702 | Msa0664100:intron | 15.0% |
| !!! | TTTTTATTCAAATAAACTCA+TGG | - | chr4_4:3072508-3072527 | Msa0664100:intron | 15.0% |
| !!! | AAAAGTTCTAACAAAATATA+AGG | + | chr4_4:3072590-3072609 | None:intergenic | 15.0% |
| !!! | ATAAGAATATTTTCATTTTG+AGG | + | chr4_4:3072644-3072663 | None:intergenic | 15.0% |
| !!! | TGATTTTTTATGATTTGTTA+TGG | - | chr4_4:3073511-3073530 | Msa0664100:intron | 15.0% |
| !!! | TCATATTTTAACAAAAAGAT+AGG | + | chr4_4:3073674-3073693 | None:intergenic | 15.0% |
| !!! | TCTTTTTGTTAAAATATGAT+TGG | - | chr4_4:3073675-3073694 | Msa0664100:intron | 15.0% |
| !! | TCAAATGAAAATATTGATAA+TGG | - | chr4_4:3073920-3073939 | Msa0664100:intron | 15.0% |
| !!! | CAAATGAAAATATTGATAAT+GGG | - | chr4_4:3073921-3073940 | Msa0664100:intron | 15.0% |
| !!! | TATGTGTTATTATTTTTCAA+TGG | - | chr4_4:3074572-3074591 | Msa0664100:CDS | 15.0% |
| !!! | TGAATTTATGTTTTTACGAT+AGG | - | chr4_4:3069727-3069746 | Msa0664100:CDS | 20.0% |
| !! | ATTATCTTTCAGTTGAATAT+TGG | - | chr4_4:3069916-3069935 | Msa0664100:intron | 20.0% |
| !! | ATAATCTTAATTGCTTCAAA+AGG | + | chr4_4:3070345-3070364 | None:intergenic | 20.0% |
| !!! | CATATTAACACAGAATTTTT+AGG | + | chr4_4:3070459-3070478 | None:intergenic | 20.0% |
| !!! | AGGAAATTTTGACTTATTAT+CGG | - | chr4_4:3070771-3070790 | Msa0664100:intron | 20.0% |
| !!! | TATCTTATTGATTTAGACTT+TGG | - | chr4_4:3070893-3070912 | Msa0664100:intron | 20.0% |
| !! | TAGAATTTCTTTAATTGAGA+AGG | - | chr4_4:3071054-3071073 | Msa0664100:intron | 20.0% |
| !! | AGAATTTCTTTAATTGAGAA+GGG | - | chr4_4:3071055-3071074 | Msa0664100:intron | 20.0% |
| !!! | ATGTTTATTTCTACATTACA+AGG | + | chr4_4:3071396-3071415 | None:intergenic | 20.0% |
| !! | TATTGATCACATTCATAAAA+CGG | - | chr4_4:3071725-3071744 | Msa0664100:CDS | 20.0% |
| !! | ATAGATTATTTATACCTTGA+AGG | + | chr4_4:3072317-3072336 | None:intergenic | 20.0% |
| !!! | ATTCAGAAACCAAATATTTT+CGG | + | chr4_4:3072485-3072504 | None:intergenic | 20.0% |
| !!! | GAACTTTTAGATATTGATAT+TGG | - | chr4_4:3072602-3072621 | Msa0664100:intron | 20.0% |
| !! | TTTGTTAAAATATGATTGGA+TGG | - | chr4_4:3073679-3073698 | Msa0664100:intron | 20.0% |
| !!! | CTATTTCGTTTGAAATAAAT+AGG | + | chr4_4:3074261-3074280 | None:intergenic | 20.0% |
| !! | GACATCAAATAAATTAAAAC+TGG | + | chr4_4:3075130-3075149 | None:intergenic | 20.0% |
| ! | ATGATTATGCGTGTAATTAT+AGG | - | chr4_4:3070124-3070143 | Msa0664100:intron | 25.0% |
| ! | AATTAAGATTATCAACTTGC+CGG | - | chr4_4:3070353-3070372 | Msa0664100:intron | 25.0% |
| !!! | GGAAATTTTGACTTATTATC+GGG | - | chr4_4:3070772-3070791 | Msa0664100:intron | 25.0% |
| !!! | GAAATTTTGACTTATTATCG+GGG | - | chr4_4:3070773-3070792 | Msa0664100:intron | 25.0% |
| ! | CAATTATTATGTAATGGTAG+AGG | - | chr4_4:3071011-3071030 | Msa0664100:intron | 25.0% |
| ! | AAGAAATTCTACAACACTAT+AGG | + | chr4_4:3071045-3071064 | None:intergenic | 25.0% |
| ! | TATCTATCTATCTATCTATG+CGG | + | chr4_4:3071277-3071296 | None:intergenic | 25.0% |
| !! | TAGATAGATAATCTTTGAAG+AGG | - | chr4_4:3071291-3071310 | Msa0664100:intron | 25.0% |
| ! | TGCACATTCAGAAAAATATA+AGG | + | chr4_4:3071565-3071584 | None:intergenic | 25.0% |
| ! | ATTGATCACATTCATAAAAC+GGG | - | chr4_4:3071726-3071745 | Msa0664100:CDS | 25.0% |
| ! | AAATTCAGATTTATCTTGAC+TGG | + | chr4_4:3072085-3072104 | None:intergenic | 25.0% |
| !!! | TGGCTTTATATTCCATAAAT+GGG | + | chr4_4:3072349-3072368 | None:intergenic | 25.0% |
| !!! | TTGGCTTTATATTCCATAAA+TGG | + | chr4_4:3072350-3072369 | None:intergenic | 25.0% |
| ! | TATGGAATATAAAGCCAATT+TGG | - | chr4_4:3072352-3072371 | Msa0664100:intron | 25.0% |
| ! | ATGGAATATAAAGCCAATTT+GGG | - | chr4_4:3072353-3072372 | Msa0664100:intron | 25.0% |
| !! | ACTTTTCTCAATTCTATTGT+TGG | + | chr4_4:3072458-3072477 | None:intergenic | 25.0% |
| !!! | TAACAGTTGATTTGAACTTT+GGG | + | chr4_4:3073126-3073145 | None:intergenic | 25.0% |
| !!! | AAAGAAGTTTTGAATCTTTC+TGG | - | chr4_4:3073241-3073260 | Msa0664100:CDS | 25.0% |
| ! | TAAAAAGGAAAGAAAAAGCA+GGG | + | chr4_4:3073374-3073393 | None:intergenic | 25.0% |
| ! | AGCTATTCAAGAATGTAAAA+AGG | + | chr4_4:3073389-3073408 | None:intergenic | 25.0% |
| !! | AAAAAAAACCGAGTGTATTT+TGG | - | chr4_4:3073609-3073628 | Msa0664100:intron | 25.0% |
| !! | AAAAAAACCGAGTGTATTTT+GGG | - | chr4_4:3073610-3073629 | Msa0664100:intron | 25.0% |
| !!! | TATTTTGGGCTAGTTTTTTT+AGG | - | chr4_4:3073624-3073643 | Msa0664100:intron | 25.0% |
| !! | AAAAGATAGGCCATATTTTT+GGG | + | chr4_4:3073661-3073680 | None:intergenic | 25.0% |
| !! | AAAAAGATAGGCCATATTTT+TGG | + | chr4_4:3073662-3073681 | None:intergenic | 25.0% |
| !! | AAAAAAAACCGAGTGTATTT+TGG | - | chr4_4:3073609-3073628 | Msa0664100:intron | 25.0% |
| !! | AAAAAAACCGAGTGTATTTT+GGG | - | chr4_4:3073610-3073629 | Msa0664100:intron | 25.0% |
| !!! | TATTTTGGGCTAGTTTTTTT+AGG | - | chr4_4:3073624-3073643 | Msa0664100:intron | 25.0% |
| ! | ATTGAATTCCTTATCCATTA+CGG | - | chr4_4:3074123-3074142 | Msa0664100:intron | 25.0% |
| !!! | ATTTTTAGAACTATACCTCT+TGG | - | chr4_4:3074196-3074215 | Msa0664100:CDS | 25.0% |
| ! | TAACACATACTGATAAGAAA+AGG | + | chr4_4:3074561-3074580 | None:intergenic | 25.0% |
| ! | TCAAGGTAATAAACTAAAAC+TGG | + | chr4_4:3074961-3074980 | None:intergenic | 25.0% |
| ! | GCTTATTACACAGTTTATAT+CGG | - | chr4_4:3075311-3075330 | Msa0664100:intron | 25.0% |
| ATCTTTCAGTTGAATATTGG+TGG | - | chr4_4:3069919-3069938 | Msa0664100:intron | 30.0% | |
| TATAGGAAGATTGTGTATTG+AGG | - | chr4_4:3070141-3070160 | Msa0664100:intron | 30.0% | |
| !! | ATTTGTGTTAAGGTATTGAG+AGG | - | chr4_4:3070220-3070239 | Msa0664100:CDS | 30.0% |
| !! | CTGTGTAGCTTAAAAGTATT+AGG | + | chr4_4:3070414-3070433 | None:intergenic | 30.0% |
| ! | CTAATACTTTTAAGCTACAC+AGG | - | chr4_4:3070412-3070431 | Msa0664100:CDS | 30.0% |
| TCAAGAGAGTTGTGTATTAT+AGG | - | chr4_4:3070516-3070535 | Msa0664100:CDS | 30.0% | |
| !!! | TTTTTTTTTATACCGTGGAG+TGG | - | chr4_4:3070682-3070701 | Msa0664100:intron | 30.0% |
| !! | CTTATTGATTTAGACTTTGG+TGG | - | chr4_4:3070896-3070915 | Msa0664100:intron | 30.0% |
| ATGTTGACGTTTCATTAACT+GGG | - | chr4_4:3071100-3071119 | Msa0664100:intron | 30.0% | |
| AAAAGCGATACACTAATTCA+TGG | - | chr4_4:3071164-3071183 | Msa0664100:intron | 30.0% | |
| ! | ATAGATAATCTTTGAAGAGG+TGG | - | chr4_4:3071294-3071313 | Msa0664100:intron | 30.0% |
| ! | TAGATAATCTTTGAAGAGGT+GGG | - | chr4_4:3071295-3071314 | Msa0664100:intron | 30.0% |
| AACAGTATCAAAGTTGAACT+CGG | + | chr4_4:3071329-3071348 | None:intergenic | 30.0% | |
| ! | ACTGCAGTACTTTTATGATA+TGG | + | chr4_4:3071357-3071376 | None:intergenic | 30.0% |
| AGTACTGCAGTAATACAAAT+TGG | - | chr4_4:3071366-3071385 | Msa0664100:intron | 30.0% | |
| ATATAAGGACAACAAATGCT+AGG | + | chr4_4:3071550-3071569 | None:intergenic | 30.0% | |
| ! | TTAAGAAAGGTTCTTCCTTT+TGG | - | chr4_4:3071644-3071663 | Msa0664100:intron | 30.0% |
| TAAGCACATTAGAAACCAAA+AGG | + | chr4_4:3071662-3071681 | None:intergenic | 30.0% | |
| !! | TATAATACAGGTTAGCTTCA+AGG | - | chr4_4:3071695-3071714 | Msa0664100:CDS | 30.0% |
| TTGATCACATTCATAAAACG+GGG | - | chr4_4:3071727-3071746 | Msa0664100:CDS | 30.0% | |
| ! | TCATATCTCTCTCATTGTTT+TGG | + | chr4_4:3071779-3071798 | None:intergenic | 30.0% |
| AAACAATGAGAGAGATATGA+AGG | - | chr4_4:3071779-3071798 | Msa0664100:CDS | 30.0% | |
| CAAGTTATAGATCGTAATGT+TGG | - | chr4_4:3071831-3071850 | Msa0664100:CDS | 30.0% | |
| ! | ACATGTATATCTCAGCTTTT+AGG | + | chr4_4:3071908-3071927 | None:intergenic | 30.0% |
| TTTATCTTGACTGGAAATCA+AGG | + | chr4_4:3072076-3072095 | None:intergenic | 30.0% | |
| TTCAACAACAATTACATAGC+TGG | + | chr4_4:3072125-3072144 | None:intergenic | 30.0% | |
| !! | GACTTTATTTGCTGTTTGTA+TGG | - | chr4_4:3072175-3072194 | Msa0664100:CDS | 30.0% |
| GGAATTAATATCTTCTTGTC+TGG | - | chr4_4:3072247-3072266 | Msa0664100:intron | 30.0% | |
| TTGTTCCAACAGAAAATCTT+AGG | - | chr4_4:3072272-3072291 | Msa0664100:intron | 30.0% | |
| CAACAGAAAATCTTAGGTTT+CGG | - | chr4_4:3072278-3072297 | Msa0664100:intron | 30.0% | |
| AACAGAAAATCTTAGGTTTC+GGG | - | chr4_4:3072279-3072298 | Msa0664100:intron | 30.0% | |
| CTTTATATTCCATAAATGGG+AGG | + | chr4_4:3072346-3072365 | None:intergenic | 30.0% | |
| TCAATCAATCTCAGTATTGT+AGG | + | chr4_4:3072415-3072434 | None:intergenic | 30.0% | |
| ! | AAAGTAGTGCCGAAAATATT+TGG | - | chr4_4:3072473-3072492 | Msa0664100:intron | 30.0% |
| TATAAATGATGCATCGCAAA+AGG | + | chr4_4:3072543-3072562 | None:intergenic | 30.0% | |
| ACTAAAAGAATACCAGCATA+CGG | + | chr4_4:3072943-3072962 | None:intergenic | 30.0% | |
| AATGAACCAACCTGAATAAA+AGG | + | chr4_4:3073028-3073047 | None:intergenic | 30.0% | |
| TTGTGTGAAATATTGAACTC+AGG | + | chr4_4:3073088-3073107 | None:intergenic | 30.0% | |
| !! | CTAACAGTTGATTTGAACTT+TGG | + | chr4_4:3073127-3073146 | None:intergenic | 30.0% |
| GATGAATTCTTTCATGTAAC+AGG | + | chr4_4:3073153-3073172 | None:intergenic | 30.0% | |
| ATCACATCTGATATAAACTG+GGG | + | chr4_4:3073190-3073209 | None:intergenic | 30.0% | |
| CATCACATCTGATATAAACT+GGG | + | chr4_4:3073191-3073210 | None:intergenic | 30.0% | |
| TCATCACATCTGATATAAAC+TGG | + | chr4_4:3073192-3073211 | None:intergenic | 30.0% | |
| GTAAAAAGGAAAGAAAAAGC+AGG | + | chr4_4:3073375-3073394 | None:intergenic | 30.0% | |
| !! | CCGATATAGACAATTTTAAC+CGG | + | chr4_4:3073548-3073567 | None:intergenic | 30.0% |
| CCGGTTAAAATTGTCTATAT+CGG | - | chr4_4:3073545-3073564 | Msa0664100:intron | 30.0% | |
| !!! | CTTTTTTATATGGGCCAAAT+GGG | - | chr4_4:3073575-3073594 | Msa0664100:intron | 30.0% |
| !! | TGAAAATATTGATAATGGGC+CGG | - | chr4_4:3073925-3073944 | Msa0664100:intron | 30.0% |
| ! | CTACTTCCATGTCAATTTTT+CGG | - | chr4_4:3074055-3074074 | Msa0664100:intron | 30.0% |
| TGACAGAGTTATTGTTTATG+AGG | - | chr4_4:3074477-3074496 | Msa0664100:intron | 30.0% | |
| GACAGAGTTATTGTTTATGA+GGG | - | chr4_4:3074478-3074497 | Msa0664100:intron | 30.0% | |
| ! | AAAATTATGTTTTGCTCTCG+TGG | - | chr4_4:3074642-3074661 | Msa0664100:intron | 30.0% |
| !!! | GTTTATTTTTGCATTGCTCT+TGG | - | chr4_4:3074843-3074862 | Msa0664100:intron | 30.0% |
| ! | AAATTGTTGAGTTGTTGCAT+TGG | + | chr4_4:3074933-3074952 | None:intergenic | 30.0% |
| AATGCAACAACTCAACAATT+TGG | - | chr4_4:3074932-3074951 | Msa0664100:intron | 30.0% | |
| ATGCAACAACTCAACAATTT+GGG | - | chr4_4:3074933-3074952 | Msa0664100:intron | 30.0% | |
| TTTGCATTTACTATTGCTCT+TGG | - | chr4_4:3075009-3075028 | Msa0664100:CDS | 30.0% | |
| AAATTGTTGAGATGTTGCAT+TGG | + | chr4_4:3075100-3075119 | None:intergenic | 30.0% | |
| TCTATATCCATTGAGAAAGA+TGG | + | chr4_4:3075178-3075197 | None:intergenic | 30.0% | |
| ATGGCGATAAACTTAATATG+TGG | + | chr4_4:3075378-3075397 | None:intergenic | 30.0% | |
| ATAAATTATGAGAGCTGAGA+TGG | + | chr4_4:3075397-3075416 | None:intergenic | 30.0% | |
| AACACAATCAAAAAGCCGAT+CGG | + | chr4_4:3069679-3069698 | None:intergenic | 35.0% | |
| ! | TCAGTTGAATATTGGTGGTT+TGG | - | chr4_4:3069924-3069943 | Msa0664100:intron | 35.0% |
| ! | CAGTTGAATATTGGTGGTTT+GGG | - | chr4_4:3069925-3069944 | Msa0664100:intron | 35.0% |
| ! | AGTTGAATATTGGTGGTTTG+GGG | - | chr4_4:3069926-3069945 | Msa0664100:intron | 35.0% |
| AACAAAACACCGAATCATAC+CGG | + | chr4_4:3070044-3070063 | None:intergenic | 35.0% | |
| TGGATGTGGTATTTGTGTTA+AGG | - | chr4_4:3070210-3070229 | Msa0664100:CDS | 35.0% | |
| ! | ATGATTTTGCGACGATAATC+TGG | - | chr4_4:3070276-3070295 | Msa0664100:intron | 35.0% |
| ! | TGATTTTGCGACGATAATCT+GGG | - | chr4_4:3070277-3070296 | Msa0664100:intron | 35.0% |
| AAAGACACCACTCATAGATA+TGG | - | chr4_4:3070387-3070406 | Msa0664100:intron | 35.0% | |
| ATTAGGACCATATCTATGAG+TGG | + | chr4_4:3070397-3070416 | None:intergenic | 35.0% | |
| TTTAGGTAACCACAGCTAAA+AGG | + | chr4_4:3070442-3070461 | None:intergenic | 35.0% | |
| AGTTGTGTATTATAGGTTGC+CGG | - | chr4_4:3070523-3070542 | Msa0664100:CDS | 35.0% | |
| TTGGTTGGGAAAAATGGAAT+TGG | - | chr4_4:3070572-3070591 | Msa0664100:CDS | 35.0% | |
| TGGTTGGGAAAAATGGAATT+GGG | - | chr4_4:3070573-3070592 | Msa0664100:CDS | 35.0% | |
| CTTTCCAGCCAAAATTCTAA+GGG | + | chr4_4:3070609-3070628 | None:intergenic | 35.0% | |
| ACTTTCCAGCCAAAATTCTA+AGG | + | chr4_4:3070610-3070629 | None:intergenic | 35.0% | |
| !!! | TAGAATTTTGGCTGGAAAGT+TGG | - | chr4_4:3070610-3070629 | Msa0664100:CDS | 35.0% |
| CATGTTGACGTTTCATTAAC+TGG | - | chr4_4:3071099-3071118 | Msa0664100:intron | 35.0% | |
| ATGTTGACATTGACATTAGC+TGG | - | chr4_4:3071193-3071212 | Msa0664100:intron | 35.0% | |
| TGTTGACATTGACATTAGCT+GGG | - | chr4_4:3071194-3071213 | Msa0664100:intron | 35.0% | |
| ! | AGATAATCTTTGAAGAGGTG+GGG | - | chr4_4:3071296-3071315 | Msa0664100:intron | 35.0% |
| GATAGTGTGACACTTAAGAA+AGG | - | chr4_4:3071631-3071650 | Msa0664100:intron | 35.0% | |
| !! | GTAATGTTGGTGATCTTTCA+GGG | - | chr4_4:3071844-3071863 | Msa0664100:CDS | 35.0% |
| !! | TAATGTTGGTGATCTTTCAG+GGG | - | chr4_4:3071845-3071864 | Msa0664100:CDS | 35.0% |
| !! | GTATATCTCAGCTTTTAGGA+GGG | + | chr4_4:3071904-3071923 | None:intergenic | 35.0% |
| ! | TGTATATCTCAGCTTTTAGG+AGG | + | chr4_4:3071905-3071924 | None:intergenic | 35.0% |
| CTCACATCAAGATAACTAGA+AGG | + | chr4_4:3071939-3071958 | None:intergenic | 35.0% | |
| TATTATGCCTTAGCAATGAC+CGG | + | chr4_4:3071989-3072008 | None:intergenic | 35.0% | |
| ! | CGAAACCTAAGATTTTCTGT+TGG | + | chr4_4:3072280-3072299 | None:intergenic | 35.0% |
| ATATTCCATAAATGGGAGGT+AGG | + | chr4_4:3072342-3072361 | None:intergenic | 35.0% | |
| CAATACTGAGATTGATTGAG+TGG | - | chr4_4:3072416-3072435 | Msa0664100:intron | 35.0% | |
| CTAGACACAACATTAAAGCA+GGG | + | chr4_4:3072747-3072766 | None:intergenic | 35.0% | |
| TGTAGTTGGAGGAGAATTTA+CGG | - | chr4_4:3072862-3072881 | Msa0664100:intron | 35.0% | |
| ! | TCTCAGATTGTTGTTATGCT+TGG | - | chr4_4:3072887-3072906 | Msa0664100:intron | 35.0% |
| ! | TTGTTATGCTTGGTGAGAAT+GGG | - | chr4_4:3072897-3072916 | Msa0664100:intron | 35.0% |
| TCATTGAAACCTGACACTAT+AGG | - | chr4_4:3073043-3073062 | Msa0664100:CDS | 35.0% | |
| ! | AACTTTGGGTTAATTGTCTG+AGG | + | chr4_4:3073112-3073131 | None:intergenic | 35.0% |
| !!! | GAAGTTTTGAATCTTTCTGG+TGG | - | chr4_4:3073244-3073263 | Msa0664100:CDS | 35.0% |
| GTTTCCTTATGTCTTTGTCT+TGG | - | chr4_4:3073280-3073299 | Msa0664100:intron | 35.0% | |
| CTTTCCAAGACAAAGACATA+AGG | + | chr4_4:3073287-3073306 | None:intergenic | 35.0% | |
| CTTATGTCTTTGTCTTGGAA+AGG | - | chr4_4:3073285-3073304 | Msa0664100:intron | 35.0% | |
| ! | GCAATCTTATGCAGTTTTCA+AGG | + | chr4_4:3073326-3073345 | None:intergenic | 35.0% |
| TTCATAGTTTCCTTTATGCC+AGG | - | chr4_4:3073408-3073427 | Msa0664100:intron | 35.0% | |
| TTAGAGTGATGACAAGATCA+AGG | - | chr4_4:3073467-3073486 | Msa0664100:intron | 35.0% | |
| TAGAGTGATGACAAGATCAA+GGG | - | chr4_4:3073468-3073487 | Msa0664100:intron | 35.0% | |
| TAAAATTGTCTATATCGGCC+CGG | - | chr4_4:3073550-3073569 | Msa0664100:intron | 35.0% | |
| CCATTTGGCCCATATAAAAA+AGG | + | chr4_4:3073577-3073596 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTATATGGGCCAAA+TGG | - | chr4_4:3073574-3073593 | Msa0664100:intron | 35.0% |
| AAACTAGCCCAAAATACACT+CGG | + | chr4_4:3073620-3073639 | None:intergenic | 35.0% | |
| AAACTAGCCCAAAATACACT+CGG | + | chr4_4:3073620-3073639 | None:intergenic | 35.0% | |
| GAAGTAGAGCTGTCAAAAAT+GGG | + | chr4_4:3074042-3074061 | None:intergenic | 35.0% | |
| GTGTTTCCGAAAAATTGACA+TGG | + | chr4_4:3074064-3074083 | None:intergenic | 35.0% | |
| ! | ATCTATTTGTGTTGACGTCA+TGG | - | chr4_4:3074169-3074188 | Msa0664100:CDS | 35.0% |
| TCTATCAGATAAATGTCTGC+AGG | + | chr4_4:3074328-3074347 | None:intergenic | 35.0% | |
| TTGCTGCAAAAGTTATCAAG+AGG | - | chr4_4:3074386-3074405 | Msa0664100:CDS | 35.0% | |
| TTTGCAGTACAGTCAATTGA+AGG | + | chr4_4:3074508-3074527 | None:intergenic | 35.0% | |
| !! | AACCAAGTTTGTTGATCCTT+GGG | + | chr4_4:3074753-3074772 | None:intergenic | 35.0% |
| ! | TTACCTTGATGACTAAGTTC+AGG | - | chr4_4:3074813-3074832 | Msa0664100:CDS | 35.0% |
| AAACCTGAACTTAGTCATCA+AGG | + | chr4_4:3074819-3074838 | None:intergenic | 35.0% | |
| !! | CTTGGAATACTTTGCTTTTG+CGG | - | chr4_4:3074861-3074880 | Msa0664100:intron | 35.0% |
| TGCAACAATAGAAACAGAGT+CGG | + | chr4_4:3074897-3074916 | None:intergenic | 35.0% | |
| GCAACAATAGAAAACAGAGT+CGG | + | chr4_4:3075063-3075082 | None:intergenic | 35.0% | |
| AGCAACATCGCTAAGTATTA+CGG | + | chr4_4:3075254-3075273 | None:intergenic | 35.0% | |
| TGTGTAATAAGCAGATTCAC+TGG | + | chr4_4:3075303-3075322 | None:intergenic | 35.0% | |
| TACACAGTTTATATCGGTCA+TGG | - | chr4_4:3075317-3075336 | Msa0664100:intron | 35.0% | |
| ACACAATCAAAAAGCCGATC+GGG | + | chr4_4:3069678-3069697 | None:intergenic | 40.0% | |
| AGATGCAAGCCAAAAAAGTG+TGG | - | chr4_4:3069983-3070002 | Msa0664100:intron | 40.0% | |
| TCGTCATAACCGGTATGATT+CGG | - | chr4_4:3070032-3070051 | Msa0664100:CDS | 40.0% | |
| TATCAACTTGCCGGAGAATT+TGG | - | chr4_4:3070362-3070381 | Msa0664100:intron | 40.0% | |
| GTGTCTTTGTCCAAATTCTC+CGG | + | chr4_4:3070375-3070394 | None:intergenic | 40.0% | |
| !! | CTTGGTTTGGTTGGGAAAAA+TGG | - | chr4_4:3070566-3070585 | Msa0664100:CDS | 40.0% |
| TGGAAAGTTGGAGCCAAATT+TGG | - | chr4_4:3070622-3070641 | Msa0664100:CDS | 40.0% | |
| GGAAAGTTGGAGCCAAATTT+GGG | - | chr4_4:3070623-3070642 | Msa0664100:CDS | 40.0% | |
| ACAGTGAAACGACCCAAATT+TGG | + | chr4_4:3070638-3070657 | None:intergenic | 40.0% | |
| CTTTCGAGATGAGAGTTTGA+AGG | - | chr4_4:3070823-3070842 | Msa0664100:intron | 40.0% | |
| GTTGACATTGACATTAGCTG+GGG | - | chr4_4:3071195-3071214 | Msa0664100:intron | 40.0% | |
| GGTATGTTGTGGTTGTGATT+GGG | - | chr4_4:3071216-3071235 | Msa0664100:intron | 40.0% | |
| GATTGGGATTTGTGAGTGTT+TGG | - | chr4_4:3071232-3071251 | Msa0664100:intron | 40.0% | |
| ACATTCATAAAACGGGGCAA+GGG | - | chr4_4:3071733-3071752 | Msa0664100:CDS | 40.0% | |
| !! | CGTAATGTTGGTGATCTTTC+AGG | - | chr4_4:3071843-3071862 | Msa0664100:CDS | 40.0% |
| !! | AATGTTGGTGATCTTTCAGG+GGG | - | chr4_4:3071846-3071865 | Msa0664100:CDS | 40.0% |
| GTTATCTTGATGTGAGACAG+AGG | - | chr4_4:3071943-3071962 | Msa0664100:intron | 40.0% | |
| GGTCATTGCTAAGGCATAAT+AGG | - | chr4_4:3071988-3072007 | Msa0664100:intron | 40.0% | |
| TGAACACGATCTTAGTGTCT+TGG | - | chr4_4:3072141-3072160 | Msa0664100:CDS | 40.0% | |
| ATTCCTTCTCTGACTGAGAA+AGG | + | chr4_4:3072232-3072251 | None:intergenic | 40.0% | |
| TATCTCCTACCTCCCATTTA+TGG | - | chr4_4:3072334-3072353 | Msa0664100:intron | 40.0% | |
| CCTAGACACAACATTAAAGC+AGG | + | chr4_4:3072748-3072767 | None:intergenic | 40.0% | |
| CCTGCTTTAATGTTGTGTCT+AGG | - | chr4_4:3072745-3072764 | Msa0664100:CDS | 40.0% | |
| !! | CTTGAGTTTTGGTCATGGTT+GGG | + | chr4_4:3072826-3072845 | None:intergenic | 40.0% |
| ! | GTTGTTATGCTTGGTGAGAA+TGG | - | chr4_4:3072896-3072915 | Msa0664100:intron | 40.0% |
| ! | TTCACCACCTCCTTTTATTC+AGG | - | chr4_4:3073015-3073034 | Msa0664100:CDS | 40.0% |
| GAACCAACCTGAATAAAAGG+AGG | + | chr4_4:3073025-3073044 | None:intergenic | 40.0% | |
| TTGAAACCTGACACTATAGG+TGG | - | chr4_4:3073046-3073065 | Msa0664100:CDS | 40.0% | |
| ATCAGCTGTTCGATAAGTAG+TGG | + | chr4_4:3073217-3073236 | None:intergenic | 40.0% | |
| ACTACTTATCGAACAGCTGA+TGG | - | chr4_4:3073216-3073235 | Msa0664100:CDS | 40.0% | |
| TAAAAGACCAAACTTCGACC+TGG | + | chr4_4:3073429-3073448 | None:intergenic | 40.0% | |
| TGTTATGGATGTGCATCAAC+CGG | - | chr4_4:3073526-3073545 | Msa0664100:intron | 40.0% | |
| TGGCCCATATAAAAAAGGAC+CGG | + | chr4_4:3073572-3073591 | None:intergenic | 40.0% | |
| ! | TTTTTGCCCAAAAGCCCATT+TGG | + | chr4_4:3073592-3073611 | None:intergenic | 40.0% |
| !!! | ATAGGCCATATTTTTGGGCT+GGG | + | chr4_4:3073656-3073675 | None:intergenic | 40.0% |
| !!! | TTTTTTTGCCCAAGCCCATT+TGG | + | chr4_4:3073972-3073991 | None:intergenic | 40.0% |
| GGAAGTAGAGCTGTCAAAAA+TGG | + | chr4_4:3074043-3074062 | None:intergenic | 40.0% | |
| !! | TCGTAGAACCGTAATGGATA+AGG | + | chr4_4:3074134-3074153 | None:intergenic | 40.0% |
| CAACACAAATAGATGTCTGC+AGG | + | chr4_4:3074163-3074182 | None:intergenic | 40.0% | |
| TGCAGCAATAATACGCTGTT+CGG | + | chr4_4:3074374-3074393 | None:intergenic | 40.0% | |
| TGCAAAGAAAACAGCCTTTG+TGG | - | chr4_4:3074420-3074439 | Msa0664100:CDS | 40.0% | |
| GAAATCATGCTCAACCACAA+AGG | + | chr4_4:3074437-3074456 | None:intergenic | 40.0% | |
| GGTTGAGCATGATTTCATCA+TGG | - | chr4_4:3074441-3074460 | Msa0664100:intron | 40.0% | |
| !! | GAACCAAGTTTGTTGATCCT+TGG | + | chr4_4:3074754-3074773 | None:intergenic | 40.0% |
| CAACAAACTTGGTTCAACCA+AGG | - | chr4_4:3074759-3074778 | Msa0664100:CDS | 40.0% | |
| ! | AAGCTTTTGCTCTCTATCCT+TGG | + | chr4_4:3074779-3074798 | None:intergenic | 40.0% |
| ! | ATAGAGAGCAAAAGCTTGCT+GGG | - | chr4_4:3074782-3074801 | Msa0664100:CDS | 40.0% |
| ! | TTACCTTGATGACTGAGTTC+AGG | - | chr4_4:3074972-3074991 | Msa0664100:CDS | 40.0% |
| AAACCTGAACTCAGTCATCA+AGG | + | chr4_4:3074978-3074997 | None:intergenic | 40.0% | |
| CTCTTGGAACACTTTGCTTT+CGG | - | chr4_4:3075025-3075044 | Msa0664100:exon | 40.0% | |
| TCTTGGAACACTTTGCTTTC+GGG | - | chr4_4:3075026-3075045 | Msa0664100:exon | 40.0% | |
| ATGGCTTCAACAGGGAAAAA+AGG | + | chr4_4:3075159-3075178 | None:intergenic | 40.0% | |
| TGAGAAAGATGGCTTCAACA+GGG | + | chr4_4:3075167-3075186 | None:intergenic | 40.0% | |
| TTGAGAAAGATGGCTTCAAC+AGG | + | chr4_4:3075168-3075187 | None:intergenic | 40.0% | |
| GTTGAAGCCATCTTTCTCAA+TGG | - | chr4_4:3075168-3075187 | Msa0664100:intron | 40.0% | |
| ATACTTAGCGATGTTGCTCA+TGG | - | chr4_4:3075256-3075275 | Msa0664100:intron | 40.0% | |
| !! | GGCCAGTTTTGGTATGATTT+CGG | - | chr4_4:3075277-3075296 | Msa0664100:intron | 40.0% |
| GTGGCATCATTATTCAGTCA+AGG | + | chr4_4:3075359-3075378 | None:intergenic | 40.0% | |
| AGAGGACGGTGAAACTAGAA+AGG | + | chr4_4:3069630-3069649 | None:intergenic | 45.0% | |
| CACAATCAAAAAGCCGATCG+GGG | + | chr4_4:3069677-3069696 | None:intergenic | 45.0% | |
| ACGCGTATTGCCATTGTCAA+TGG | - | chr4_4:3069956-3069975 | Msa0664100:intron | 45.0% | |
| GCATCTGTCTCCATTGACAA+TGG | + | chr4_4:3069969-3069988 | None:intergenic | 45.0% | |
| ! | CAAGCCAAAAAAGTGTGGAC+AGG | - | chr4_4:3069988-3070007 | Msa0664100:intron | 45.0% |
| !!! | CACTCCTGTCCACACTTTTT+TGG | + | chr4_4:3069995-3070014 | None:intergenic | 45.0% |
| ! | TCATACCGGTTATGACGACA+GGG | + | chr4_4:3070030-3070049 | None:intergenic | 45.0% |
| ! | ATCATACCGGTTATGACGAC+AGG | + | chr4_4:3070031-3070050 | None:intergenic | 45.0% |
| GAAGATTGCTTACCTATCCG+AGG | - | chr4_4:3070177-3070196 | Msa0664100:CDS | 45.0% | |
| ACATCCAGTGCACAATTCCT+CGG | + | chr4_4:3070197-3070216 | None:intergenic | 45.0% | |
| !! | GGAAAGTGCTTGGTTTGGTT+GGG | - | chr4_4:3070558-3070577 | Msa0664100:CDS | 45.0% |
| ! | GTCCACTGCCCTTAGAATTT+TGG | - | chr4_4:3070598-3070617 | Msa0664100:CDS | 45.0% |
| ! | AGCCAAAATTCTAAGGGCAG+TGG | + | chr4_4:3070603-3070622 | None:intergenic | 45.0% |
| !! | ACTGCCCTTAGAATTTTGGC+TGG | - | chr4_4:3070602-3070621 | Msa0664100:CDS | 45.0% |
| AAACATGTCTGTCCACTCCA+CGG | + | chr4_4:3070697-3070716 | None:intergenic | 45.0% | |
| ! | ACTGCATTCACCTCTGCTTT+TGG | - | chr4_4:3070725-3070744 | Msa0664100:intron | 45.0% |
| GTTCTGCAAACCAAAAGCAG+AGG | + | chr4_4:3070738-3070757 | None:intergenic | 45.0% | |
| AAATTTCCTGCCAGTCAGGA+GGG | + | chr4_4:3070760-3070779 | None:intergenic | 45.0% | |
| AAAATTTCCTGCCAGTCAGG+AGG | + | chr4_4:3070761-3070780 | None:intergenic | 45.0% | |
| GTCAAAATTTCCTGCCAGTC+AGG | + | chr4_4:3070764-3070783 | None:intergenic | 45.0% | |
| ACATTAGCTGGGGTATGTTG+TGG | - | chr4_4:3071205-3071224 | Msa0664100:intron | 45.0% | |
| GGGTATGTTGTGGTTGTGAT+TGG | - | chr4_4:3071215-3071234 | Msa0664100:intron | 45.0% | |
| CACATTCATAAAACGGGGCA+AGG | - | chr4_4:3071732-3071751 | Msa0664100:CDS | 45.0% | |
| CAACAGCAATGGCAAACCTT+TGG | + | chr4_4:3071878-3071897 | None:intergenic | 45.0% | |
| TAGCAATGACCGGACAACTT+GGG | + | chr4_4:3071979-3071998 | None:intergenic | 45.0% | |
| TTAGCAATGACCGGACAACT+TGG | + | chr4_4:3071980-3071999 | None:intergenic | 45.0% | |
| AAGTTGTCCGGTCATTGCTA+AGG | - | chr4_4:3071979-3071998 | Msa0664100:intron | 45.0% | |
| ! | TGCTGTTTGTATGGAACACC+TGG | - | chr4_4:3072184-3072203 | Msa0664100:CDS | 45.0% |
| TATGGAACACCTGGTGCATA+TGG | - | chr4_4:3072193-3072212 | Msa0664100:CDS | 45.0% | |
| CTTCCTTTCTCAGTCAGAGA+AGG | - | chr4_4:3072226-3072245 | Msa0664100:intron | 45.0% | |
| GGATGACTCTCTTACCTTCA+AGG | - | chr4_4:3072300-3072319 | Msa0664100:intron | 45.0% | |
| ATCAATCTCAGCGCCCAAAT+TGG | + | chr4_4:3072369-3072388 | None:intergenic | 45.0% | |
| TGAGCTTCAGCAGTTTCATG+TGG | + | chr4_4:3072782-3072801 | None:intergenic | 45.0% | |
| !! | CCTTGAGTTTTGGTCATGGT+TGG | + | chr4_4:3072827-3072846 | None:intergenic | 45.0% |
| CCAACCATGACCAAAACTCA+AGG | - | chr4_4:3072824-3072843 | Msa0664100:CDS | 45.0% | |
| !! | CTTGCCTTGAGTTTTGGTCA+TGG | + | chr4_4:3072831-3072850 | None:intergenic | 45.0% |
| ! | CCTGAACTTGCCTTGAGTTT+TGG | + | chr4_4:3072837-3072856 | None:intergenic | 45.0% |
| CCAAAACTCAAGGCAAGTTC+AGG | - | chr4_4:3072834-3072853 | Msa0664100:CDS | 45.0% | |
| AAGTTCAGGCTTCGTGTAGT+TGG | - | chr4_4:3072848-3072867 | Msa0664100:intron | 45.0% | |
| ! | TATGCTTGGTGAGAATGGGA+CGG | - | chr4_4:3072901-3072920 | Msa0664100:intron | 45.0% |
| GACAACATTCATCCGTATGC+TGG | - | chr4_4:3072928-3072947 | Msa0664100:intron | 45.0% | |
| CCAACCTGAATAAAAGGAGG+TGG | + | chr4_4:3073022-3073041 | None:intergenic | 45.0% | |
| ! | CCACCTCCTTTTATTCAGGT+TGG | - | chr4_4:3073019-3073038 | Msa0664100:CDS | 45.0% |
| TCAGATCCACCTATAGTGTC+AGG | + | chr4_4:3073055-3073074 | None:intergenic | 45.0% | |
| CACTATAGGTGGATCTGATG+TGG | - | chr4_4:3073057-3073076 | Msa0664100:CDS | 45.0% | |
| CAGGGCAGACACTAGAATTA+AGG | + | chr4_4:3073356-3073375 | None:intergenic | 45.0% | |
| CAAACTTCGACCTGGCATAA+AGG | + | chr4_4:3073421-3073440 | None:intergenic | 45.0% | |
| CTTTATGCCAGGTCGAAGTT+TGG | - | chr4_4:3073419-3073438 | Msa0664100:intron | 45.0% | |
| !!! | GGCCCGGTCCTTTTTTATAT+GGG | - | chr4_4:3073566-3073585 | Msa0664100:intron | 45.0% |
| GGCCCATATAAAAAAGGACC+GGG | + | chr4_4:3073571-3073590 | None:intergenic | 45.0% | |
| !! | ATATGGGCCAAATGGGCTTT+TGG | - | chr4_4:3073582-3073601 | Msa0664100:intron | 45.0% |
| !! | TATGGGCCAAATGGGCTTTT+GGG | - | chr4_4:3073583-3073602 | Msa0664100:intron | 45.0% |
| !!! | GGGCTAGTTTTTTTAGGTCC+CGG | - | chr4_4:3073630-3073649 | Msa0664100:intron | 45.0% |
| !!! | GATAGGCCATATTTTTGGGC+TGG | + | chr4_4:3073657-3073676 | None:intergenic | 45.0% |
| !!! | GGGCTAGTTTTTTTAGGTCC+CGG | - | chr4_4:3073630-3073649 | Msa0664100:intron | 45.0% |
| CTACTGTCGTAGAACCGTAA+TGG | + | chr4_4:3074140-3074159 | None:intergenic | 45.0% | |
| AAAGACACAACGAAGCCAAG+AGG | + | chr4_4:3074214-3074233 | None:intergenic | 45.0% | |
| TAAATGTCTGCAGGCTGTTG+TGG | + | chr4_4:3074319-3074338 | None:intergenic | 45.0% | |
| TCGGAATCAAGATGTGCACT+TGG | + | chr4_4:3074355-3074374 | None:intergenic | 45.0% | |
| ATCCAACTAATTTCCGCCCA+AGG | - | chr4_4:3074734-3074753 | Msa0664100:intron | 45.0% | |
| ATCCTTGGGCGGAAATTAGT+TGG | + | chr4_4:3074739-3074758 | None:intergenic | 45.0% | |
| !! | CAAGTTTGTTGATCCTTGGG+CGG | + | chr4_4:3074750-3074769 | None:intergenic | 45.0% |
| GATAGAGAGCAAAAGCTTGC+TGG | - | chr4_4:3074781-3074800 | Msa0664100:CDS | 45.0% | |
| ! | TGTTGCATTGGCAAAAGAGC+AGG | + | chr4_4:3074921-3074940 | None:intergenic | 45.0% |
| CTTGGAACACTTTGCTTTCG+GGG | - | chr4_4:3075027-3075046 | Msa0664100:exon | 45.0% | |
| ! | TGTTGCATTGGCAAAAGAGC+AGG | + | chr4_4:3074921-3074940 | None:intergenic | 45.0% |
| GCTACATGCAGAGCATATGT+TGG | - | chr4_4:3075207-3075226 | Msa0664100:intron | 45.0% | |
| CATGCAGAGCATATGTTGGT+TGG | - | chr4_4:3075211-3075230 | Msa0664100:intron | 45.0% | |
| ! | ATGTTGCTCATGGCCAGTTT+TGG | - | chr4_4:3075266-3075285 | Msa0664100:intron | 45.0% |
| GGCCGAAATCATACCAAAAC+TGG | + | chr4_4:3075282-3075301 | None:intergenic | 45.0% | |
| !!! | AATTTTTTTTTTTTACAAAT+TGG | - | chr4_4:3070957-3070976 | Msa0664100:intron | 5.0% |
| !!! | TTCAATTATTTTAAAAATAA+TGG | + | chr4_4:3074600-3074619 | None:intergenic | 5.0% |
| ! | ACTAGAAAGGTGTGCCTTGC+CGG | + | chr4_4:3069617-3069636 | None:intergenic | 50.0% |
| CGGTGAATAGAGAGAGAGGA+CGG | + | chr4_4:3069644-3069663 | None:intergenic | 50.0% | |
| CTGTCGGTGAATAGAGAGAG+AGG | + | chr4_4:3069648-3069667 | None:intergenic | 50.0% | |
| CTCTCTCTCTATTCACCGAC+AGG | - | chr4_4:3069646-3069665 | Msa0664100:three_prime_UTR | 50.0% | |
| CAGTGCACAATTCCTCGGAT+AGG | + | chr4_4:3070192-3070211 | None:intergenic | 50.0% | |
| CTATCCGAGGAATTGTGCAC+TGG | - | chr4_4:3070190-3070209 | Msa0664100:CDS | 50.0% | |
| GAGGAATTGTGCACTGGATG+TGG | - | chr4_4:3070196-3070215 | Msa0664100:CDS | 50.0% | |
| !! | ATTATAGGTTGCCGGTTCCG+AGG | - | chr4_4:3070531-3070550 | Msa0664100:CDS | 50.0% |
| ACCAAACCAAGCACTTTCCC+CGG | + | chr4_4:3070557-3070576 | None:intergenic | 50.0% | |
| !! | GGGAAAGTGCTTGGTTTGGT+TGG | - | chr4_4:3070557-3070576 | Msa0664100:CDS | 50.0% |
| GGAGTGGACAGACATGTTTG+AGG | - | chr4_4:3070698-3070717 | Msa0664100:intron | 50.0% | |
| TGAAAGCTGCCCAAGTTGTC+CGG | - | chr4_4:3071967-3071986 | Msa0664100:intron | 50.0% | |
| GTTACGACTCCATATGCACC+AGG | + | chr4_4:3072205-3072224 | None:intergenic | 50.0% | |
| TTCAGGCTTCGTGTAGTTGG+AGG | - | chr4_4:3072851-3072870 | Msa0664100:intron | 50.0% | |
| ! | ATGCTTGGTGAGAATGGGAC+GGG | - | chr4_4:3072902-3072921 | Msa0664100:intron | 50.0% |
| !!! | CGGCCCGGTCCTTTTTTATA+TGG | - | chr4_4:3073565-3073584 | Msa0664100:intron | 50.0% |
| CTGTCAAAAATGGGCCAGCT+GGG | + | chr4_4:3074033-3074052 | None:intergenic | 50.0% | |
| CGCCCAAGGATCAACAAACT+TGG | - | chr4_4:3074748-3074767 | Msa0664100:intron | 50.0% | |
| GCAATCGCAAGGAGAGTGGA+GGG | + | chr4_4:3069575-3069594 | None:intergenic | 55.0% | |
| CGTTGCCCTGTCGTCATAAC+CGG | - | chr4_4:3070022-3070041 | Msa0664100:intron | 55.0% | |
| !! | ACAGGTGCGCCTTTTAGCTG+TGG | - | chr4_4:3070430-3070449 | Msa0664100:CDS | 55.0% |
| GTTTGCAGAACCCTCCTGAC+TGG | - | chr4_4:3070747-3070766 | Msa0664100:intron | 55.0% | |
| TAAAACGGGGCAAGGGAACG+TGG | - | chr4_4:3071740-3071759 | Msa0664100:CDS | 55.0% | |
| AAAACGGGGCAAGGGAACGT+GGG | - | chr4_4:3071741-3071760 | Msa0664100:CDS | 55.0% | |
| TTTCAGGGGGTGAGCTCCAA+AGG | - | chr4_4:3071859-3071878 | Msa0664100:CDS | 55.0% | |
| TAGGAGGGCAGCAACAGCAA+TGG | + | chr4_4:3071889-3071908 | None:intergenic | 55.0% | |
| !! | GGGCGCTGAGATTGATTGAG+TGG | - | chr4_4:3072373-3072392 | Msa0664100:intron | 55.0% |
| !!! | CCATATTTTTGGGCTGGGCC+GGG | + | chr4_4:3073651-3073670 | None:intergenic | 55.0% |
| !!! | GCCATATTTTTGGGCTGGGC+CGG | + | chr4_4:3073652-3073671 | None:intergenic | 55.0% |
| GCTGTCAAAAATGGGCCAGC+TGG | + | chr4_4:3074034-3074053 | None:intergenic | 55.0% | |
| CGCAATCGCAAGGAGAGTGG+AGG | + | chr4_4:3069576-3069595 | None:intergenic | 60.0% | |
| ! | AAAGGTGTGCCTTGCCGGAC+GGG | + | chr4_4:3069612-3069631 | None:intergenic | 60.0% |
| ! | GAAAGGTGTGCCTTGCCGGA+CGG | + | chr4_4:3069613-3069632 | None:intergenic | 60.0% |
| !! | GCCGGGGAAAGTGCTTGGTT+TGG | - | chr4_4:3070553-3070572 | Msa0664100:CDS | 60.0% |
| AAACGGGGCAAGGGAACGTG+GGG | - | chr4_4:3071742-3071761 | Msa0664100:CDS | 60.0% | |
| CCCGGCCCAGCCCAAAAATA+TGG | - | chr4_4:3073648-3073667 | Msa0664100:intron | 60.0% | |
| CCCATTTGGCCTGGCTCATC+GGG | + | chr4_4:3073958-3073977 | None:intergenic | 60.0% | |
| CCCGATGAGCCAGGCCAAAT+GGG | - | chr4_4:3073955-3073974 | Msa0664100:intron | 60.0% | |
| GCCCATTTGGCCTGGCTCAT+CGG | + | chr4_4:3073959-3073978 | None:intergenic | 60.0% | |
| ! | TGAGCCAGGCCAAATGGGCT+TGG | - | chr4_4:3073960-3073979 | Msa0664100:intron | 60.0% |
| ! | GAGCCAGGCCAAATGGGCTT+GGG | - | chr4_4:3073961-3073980 | Msa0664100:intron | 60.0% |
| TTGCCCAAGCCCATTTGGCC+TGG | + | chr4_4:3073967-3073986 | None:intergenic | 60.0% | |
| !!! | TTTTTAGGTCCCGGCCCAGC+TGG | - | chr4_4:3073639-3073658 | Msa0664100:intron | 60.0% |
| AAAAATGGGCCAGCTGGGCC+GGG | + | chr4_4:3074028-3074047 | None:intergenic | 60.0% | |
| CAAAAATGGGCCAGCTGGGC+CGG | + | chr4_4:3074029-3074048 | None:intergenic | 60.0% | |
| CGGCGCAATCGCAAGGAGAG+TGG | + | chr4_4:3069579-3069598 | None:intergenic | 65.0% | |
| TGTGCCTTGCCGGACGGGAA+AGG | + | chr4_4:3069607-3069626 | None:intergenic | 65.0% | |
| CCGATCGGGGAGAGACCTGT+CGG | + | chr4_4:3069664-3069683 | None:intergenic | 65.0% | |
| CCGACAGGTCTCTCCCCGAT+CGG | - | chr4_4:3069661-3069680 | Msa0664100:three_prime_UTR | 65.0% | |
| !! | TAGGTTGCCGGTTCCGAGGC+CGG | - | chr4_4:3070535-3070554 | Msa0664100:CDS | 65.0% |
| ACTTTCCCCGGCCTCGGAAC+CGG | + | chr4_4:3070545-3070564 | None:intergenic | 65.0% | |
| CCAAGCACTTTCCCCGGCCT+CGG | + | chr4_4:3070551-3070570 | None:intergenic | 65.0% | |
| GCAGAACCCTCCTGACTGGC+AGG | - | chr4_4:3070751-3070770 | Msa0664100:intron | 65.0% | |
| TGGCCTGGCTCATCGGGCTT+CGG | + | chr4_4:3073952-3073971 | None:intergenic | 65.0% | |
| GCCCGATGAGCCAGGCCAAA+TGG | - | chr4_4:3073954-3073973 | Msa0664100:intron | 65.0% | |
| GGTGCGACGGCGCAATCGCA+AGG | + | chr4_4:3069586-3069605 | None:intergenic | 70.0% | |
| GCCGTCGCACCTTTCCCGTC+CGG | - | chr4_4:3069595-3069614 | Msa0664100:three_prime_UTR | 70.0% | |
| ! | GCCGGACGGGAAAGGTGCGA+CGG | + | chr4_4:3069599-3069618 | None:intergenic | 70.0% |
| CGCACCTTTCCCGTCCGGCA+AGG | - | chr4_4:3069600-3069619 | Msa0664100:three_prime_UTR | 70.0% | |
| !! | AGGTTGCCGGTTCCGAGGCC+GGG | - | chr4_4:3070536-3070555 | Msa0664100:CDS | 70.0% |
| !! | CCGAGGCCGGGGAAAGTGCT+TGG | - | chr4_4:3070548-3070567 | Msa0664100:CDS | 70.0% |
| TGGCTCATCGGGCTTCGGGC+CGG | + | chr4_4:3073947-3073966 | None:intergenic | 70.0% | |
| GGCCTGGCTCATCGGGCTTC+GGG | + | chr4_4:3073951-3073970 | None:intergenic | 70.0% | |
| !! | GGTTGCCGGTTCCGAGGCCG+GGG | - | chr4_4:3070537-3070556 | Msa0664100:CDS | 75.0% |
| GGCCCGAAGCCCGATGAGCC+AGG | - | chr4_4:3073946-3073965 | Msa0664100:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3069549 | 3075441 | 3069549 | ID=Msa0664100;Name=Msa0664100 |
| chr4_4 | mRNA | 3069549 | 3075441 | 3069549 | ID=Msa0664100-mRNA-1;Parent=Msa0664100;Name=Msa0664100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=144|0.84|0.85|1|0.69|0.64|14|135|700 |
| chr4_4 | exon | 3069549 | 3069905 | 3069549 | ID=Msa0664100-mRNA-1:exon:911;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3070024 | 3070072 | 3070024 | ID=Msa0664100-mRNA-1:exon:910;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3070156 | 3070281 | 3070156 | ID=Msa0664100-mRNA-1:exon:909;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3070397 | 3070665 | 3070397 | ID=Msa0664100-mRNA-1:exon:908;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3071684 | 3071953 | 3071684 | ID=Msa0664100-mRNA-1:exon:907;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3072041 | 3072223 | 3072041 | ID=Msa0664100-mRNA-1:exon:906;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3072669 | 3072864 | 3072669 | ID=Msa0664100-mRNA-1:exon:905;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3072981 | 3073285 | 3072981 | ID=Msa0664100-mRNA-1:exon:904;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3074146 | 3074235 | 3074146 | ID=Msa0664100-mRNA-1:exon:903;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3074335 | 3074452 | 3074335 | ID=Msa0664100-mRNA-1:exon:902;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3074557 | 3074654 | 3074557 | ID=Msa0664100-mRNA-1:exon:901;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3074759 | 3074844 | 3074759 | ID=Msa0664100-mRNA-1:exon:900;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3074947 | 3075062 | 3074947 | ID=Msa0664100-mRNA-1:exon:899;Parent=Msa0664100-mRNA-1 |
| chr4_4 | exon | 3075323 | 3075441 | 3075323 | ID=Msa0664100-mRNA-1:exon:898;Parent=Msa0664100-mRNA-1 |
| chr4_4 | five_prime_UTR | 3075323 | 3075441 | 3075323 | ID=Msa0664100-mRNA-1:five_prime_utr;Parent=Msa0664100-mRNA-1 |
| chr4_4 | five_prime_UTR | 3075038 | 3075062 | 3075038 | ID=Msa0664100-mRNA-1:five_prime_utr;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3074947 | 3075037 | 3074947 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3074759 | 3074844 | 3074759 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3074557 | 3074654 | 3074557 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3074335 | 3074452 | 3074335 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3074146 | 3074235 | 3074146 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3072981 | 3073285 | 3072981 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3072669 | 3072864 | 3072669 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3072041 | 3072223 | 3072041 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3071684 | 3071953 | 3071684 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3070397 | 3070665 | 3070397 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3070156 | 3070281 | 3070156 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3070024 | 3070072 | 3070024 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | CDS | 3069684 | 3069905 | 3069684 | ID=Msa0664100-mRNA-1:cds;Parent=Msa0664100-mRNA-1 |
| chr4_4 | three_prime_UTR | 3069549 | 3069683 | 3069549 | ID=Msa0664100-mRNA-1:three_prime_utr;Parent=Msa0664100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
