AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0018610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018610 MtrunA17_Chr1g0170671 91.038 212 16 1 1 209 1 212 5.48e-144 399
Msa0018610 MtrunA17_Chr5g0403911 40.373 161 83 4 56 205 26 184 2.33e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018610 AT5G51110.2 62.694 193 71 1 18 209 1 193 2.82e-87 256
Msa0018610 AT5G51110.1 61.463 205 76 3 7 209 17 220 1.59e-85 252
Msa0018610 AT1G29810.2 38.211 123 75 1 85 206 23 145 2.47e-28 104
Msa0018610 AT1G29810.1 38.655 119 72 1 89 206 66 184 5.98e-28 104

Find 75 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATAACAAAATACTTTA+TGG 0.114079 1_1:+31473944 None:intergenic
AGAGAAAGAGCAGAGATATT+TGG 0.213526 1_1:+31476883 None:intergenic
GTTGCTTGGTGTTTGTTTAT+TGG 0.219408 1_1:+31477198 None:intergenic
TTGCTTGGTGTTTGTTTATT+GGG 0.271612 1_1:+31477199 None:intergenic
TGCTCTTTCTCTTTCTCAAC+AGG 0.290739 1_1:-31476872 Msa0018610:CDS
GAGAAAGAGCAGAGATATTT+GGG 0.293549 1_1:+31476884 None:intergenic
GGTTGTTCTATGTGGATATT+GGG 0.302096 1_1:+31474863 None:intergenic
AGTTCTGCTCTGACTTGATT+TGG 0.343959 1_1:+31474842 None:intergenic
TGGTTGTTCTATGTGGATAT+TGG 0.345309 1_1:+31474862 None:intergenic
ATTGAGAAGTTCAATGGAAT+AGG 0.351339 1_1:+31477230 None:intergenic
ATTGAATGAAGGATTGAGTT+TGG 0.363121 1_1:+31477065 None:intergenic
GAGCAGAGATATTTGGGATA+AGG 0.364640 1_1:+31476890 None:intergenic
GTTGTGTTGTTTGTGTGGAT+TGG 0.374030 1_1:+31477260 None:intergenic
CAATTCGGAGAGAAAGTTAT+AGG 0.381204 1_1:-31476937 Msa0018610:CDS
GGGGTCTGTAAAGGTGAAAT+GGG 0.387940 1_1:+31476841 None:intergenic
ATCAAGTCAGAGCAGAACTA+TGG 0.396655 1_1:-31474838 Msa0018610:CDS
ACTTCTTCCTCTGTGTTGCT+TGG 0.416865 1_1:+31477184 None:intergenic
CATTATACTTAACAGACTTC+AGG 0.426078 1_1:+31473834 None:intergenic
AATTGACTTTCCAACTCAGC+TGG 0.437285 1_1:+31476955 None:intergenic
AGTGTTGAAATGTATATAAA+TGG 0.437617 1_1:+31473779 None:intergenic
CATCAAATAACACAAATTAG+TGG 0.443216 1_1:+31473901 None:intergenic
CTTGATTTGGTTGTTCTATG+TGG 0.454566 1_1:+31474855 None:intergenic
TTTCAGAACCGTACTCCAAA+CGG 0.461066 1_1:-31477042 Msa0018610:CDS
TTCAGAACCGTACTCCAAAC+GGG 0.462057 1_1:-31477041 Msa0018610:CDS
AAAATACTTTATGGAGCTCA+TGG 0.462531 1_1:+31473953 None:intergenic
CGAAGTGGAGAGAACCCGTT+TGG 0.465122 1_1:+31477027 None:intergenic
ATGTTACCTTTCTTATAAGC+TGG 0.467127 1_1:+31476797 None:intergenic
GGGTCTGTAAAGGTGAAATG+GGG 0.472534 1_1:+31476842 None:intergenic
TGTCCCAAGGAAAAGAGCTT+GGG 0.472741 1_1:-31473985 Msa0018610:CDS
TTGAGAAGTTCAATGGAATA+GGG 0.473042 1_1:+31477231 None:intergenic
CTTTCCAACTCAGCTGGGAA+AGG 0.477753 1_1:+31476961 None:intergenic
TGTGGATTGGATTTGCTTGG+TGG 0.483861 1_1:+31477273 None:intergenic
TTGTGTGGATTGGATTTGCT+TGG 0.489697 1_1:+31477270 None:intergenic
GTGAGATTTATCTGTAACAC+AGG 0.490158 1_1:+31477093 None:intergenic
GAGAGAACCCGTTTGGAGTA+CGG 0.497420 1_1:+31477034 None:intergenic
TACTTAAACTTCGATGCTTG+TGG 0.499142 1_1:-31474961 Msa0018610:CDS
TGCTAACCAGCTTATAAGAA+AGG 0.502324 1_1:-31476803 Msa0018610:intron
GGTTAGCATCATCTTGAGAA+AGG 0.509678 1_1:+31476818 None:intergenic
GTGTGGATTGAGAAGTTCAA+TGG 0.514480 1_1:+31477224 None:intergenic
GCTGAGTTGGAAAGTCAATT+CGG 0.516869 1_1:-31476952 Msa0018610:CDS
AGACCCTTTCCCAGCTGAGT+TGG 0.518212 1_1:-31476965 Msa0018610:CDS
TTAGTGTATAATAAAATCAA+TGG 0.519015 1_1:-31477145 Msa0018610:exon
TTTCCAACTCAGCTGGGAAA+GGG 0.519124 1_1:+31476962 None:intergenic
GATGGTGTATGCAGAAATCC+AGG 0.520542 1_1:+31473693 None:intergenic
GTTAGCATCATCTTGAGAAA+GGG 0.522512 1_1:+31476819 None:intergenic
TTGTCCCAAGGAAAAGAGCT+TGG 0.523587 1_1:-31473986 Msa0018610:CDS
CGGTTCTGAAAATTGAATGA+AGG 0.524663 1_1:+31477054 None:intergenic
TGGAGACTTGTGAACGATGA+AGG 0.527450 1_1:-31474986 Msa0018610:CDS
GTAGTGTTGTGTTGTTTGTG+TGG 0.533878 1_1:+31477255 None:intergenic
TGTTTGTTTATTGGGTTGTG+TGG 0.538375 1_1:+31477207 None:intergenic
GAAGGATAATAATACAAGCT+TGG 0.542503 1_1:+31477116 None:intergenic
TGGTGGTCAATAATAGCCTC+TGG 0.543050 1_1:+31477290 None:intergenic
ATTTATGTGTGAAAATGGCC+TGG 0.556908 1_1:-31473711 Msa0018610:three_prime_UTR
ATTGACTTTCCAACTCAGCT+GGG 0.560497 1_1:+31476956 None:intergenic
TTGAAATGTATATAAATGGC+TGG 0.567050 1_1:+31473783 None:intergenic
GAATGAAGGATTGAGTTTGG+TGG 0.568750 1_1:+31477068 None:intergenic
TGAAGGATTGAGTTTGGTGG+TGG 0.582218 1_1:+31477071 None:intergenic
TCTACAGTTGTAGAGACTGC+AGG 0.582828 1_1:-31474893 Msa0018610:CDS
GAACTATGGACAACATCCAT+TGG 0.598647 1_1:-31474824 Msa0018610:intron
GGTCTGTAAAGGTGAAATGG+GGG 0.605985 1_1:+31476843 None:intergenic
GTTGTTCTATGTGGATATTG+GGG 0.611420 1_1:+31474864 None:intergenic
TTGTATGTTAAAGGAAGTGA+TGG 0.620875 1_1:+31473675 None:intergenic
TTAGCATCATCTTGAGAAAG+GGG 0.631573 1_1:+31476820 None:intergenic
ATTTATCTGTAACACAGGGA+AGG 0.634474 1_1:+31477098 None:intergenic
CAAACGGGTTCTCTCCACTT+CGG 0.636865 1_1:-31477026 Msa0018610:CDS
AGCATCATCTTGAGAAAGGG+GGG 0.639488 1_1:+31476822 None:intergenic
TAGCATCATCTTGAGAAAGG+GGG 0.654155 1_1:+31476821 None:intergenic
AGACATCAGATCTTGTCCCA+AGG 0.671698 1_1:-31473998 Msa0018610:CDS
CACCACACTATTACCACCAG+AGG 0.677937 1_1:-31477306 Msa0018610:five_prime_UTR
CTCTGGTGGTAATAGTGTGG+TGG 0.682204 1_1:+31477307 None:intergenic
AGCCTCTGGTGGTAATAGTG+TGG 0.702263 1_1:+31477304 None:intergenic
TCGTTGTTAAAAGACCGAAG+TGG 0.708298 1_1:+31477012 None:intergenic
ACAAACACCAAGCAACACAG+AGG 0.715307 1_1:-31477191 Msa0018610:five_prime_UTR
TGGTCAATAATAGCCTCTGG+TGG 0.715405 1_1:+31477293 None:intergenic
TGAGATTTATCTGTAACACA+GGG 0.732922 1_1:+31477094 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTGTATAATAAAATCAA+TGG - chr1_1:31473846-31473865 Msa0018610:three_prime_UTR 15.0%
!!! TCATAATCAAATTAACATTT+TGG + chr1_1:31475015-31475034 None:intergenic 15.0%
!!! TTATTTTCCAAATGAAAATA+CGG + chr1_1:31475467-31475486 None:intergenic 15.0%
!!! CTTTTATTTTTTTGCTAATA+AGG + chr1_1:31475688-31475707 None:intergenic 15.0%
!!! TATAAAATAAGTGTCTTTTA+AGG + chr1_1:31476322-31476341 None:intergenic 15.0%
!! TCAATGATATTAAATGTATT+AGG + chr1_1:31476570-31476589 None:intergenic 15.0%
!! ATTCATAACAAAATACTTTA+TGG + chr1_1:31477050-31477069 None:intergenic 15.0%
!!! ATTTTATTTATGTGTGAAAA+TGG - chr1_1:31477275-31477294 Msa0018610:five_prime_UTR 15.0%
!!! TTTTATTATACACTAACTAC+TGG + chr1_1:31473842-31473861 None:intergenic 20.0%
!! TTTATAACTGTCTAAAAAAG+TGG + chr1_1:31474362-31474381 None:intergenic 20.0%
!! ATGAACATGTGTTTATAAAT+GGG + chr1_1:31474529-31474548 None:intergenic 20.0%
!! AGAAAAATGTTATAAGACAT+AGG - chr1_1:31474826-31474845 Msa0018610:CDS 20.0%
!! CATTAAAATTTCTTTGACAT+GGG + chr1_1:31475071-31475090 None:intergenic 20.0%
!! ATATCTTTGCAGTTATAAAA+AGG + chr1_1:31475416-31475435 None:intergenic 20.0%
!!! TATTTTCCAAATGAAAATAC+GGG + chr1_1:31475466-31475485 None:intergenic 20.0%
!!! TTTGTTACTATTACCATTTT+CGG - chr1_1:31475513-31475532 Msa0018610:intron 20.0%
!!! GTTTTTCTTTTCATTTATGT+AGG - chr1_1:31475974-31475993 Msa0018610:intron 20.0%
!!! TTTTCATTTATGTAGGTTTT+GGG - chr1_1:31475981-31476000 Msa0018610:intron 20.0%
!!! AAATTGAGAGATTTTAAATG+CGG - chr1_1:31476053-31476072 Msa0018610:intron 20.0%
!! AACTAATAACTAAGAATGAT+AGG + chr1_1:31476229-31476248 None:intergenic 20.0%
!! GATTATAATCAAAATTAGTG+TGG + chr1_1:31476468-31476487 None:intergenic 20.0%
!!! TTTTTTTGTAACCATATTCT+TGG + chr1_1:31476517-31476536 None:intergenic 20.0%
!!! AGTGTTGAAATGTATATAAA+TGG + chr1_1:31477215-31477234 None:intergenic 20.0%
!! TCTTTTAACAACGATTTCTT+GGG - chr1_1:31473988-31474007 Msa0018610:CDS 25.0%
! TGAACATGTGTTTATAAATG+GGG + chr1_1:31474528-31474547 None:intergenic 25.0%
! CATGAACATGTGTTTATAAA+TGG + chr1_1:31474530-31474549 None:intergenic 25.0%
!! CTTTTATAGACAAATGTTAG+TGG + chr1_1:31474808-31474827 None:intergenic 25.0%
! TTGGTAAAAGTTAAGATGAA+AGG + chr1_1:31474934-31474953 None:intergenic 25.0%
! GCATTAAAATTTCTTTGACA+TGG + chr1_1:31475072-31475091 None:intergenic 25.0%
! TGTACTTATACTCTATTGAA+TGG + chr1_1:31475116-31475135 None:intergenic 25.0%
! TTATATGCTGAACATTTGAA+TGG - chr1_1:31475194-31475213 Msa0018610:intron 25.0%
! AGAAAATTGATACACTTAAC+TGG + chr1_1:31475336-31475355 None:intergenic 25.0%
!! TAACATGATATAAAGTGTTC+AGG - chr1_1:31475484-31475503 Msa0018610:intron 25.0%
!! ACTCAAAGTTTTCAAATTTG+AGG + chr1_1:31475610-31475629 None:intergenic 25.0%
!! CTTTTCATTTATGTAGGTTT+TGG - chr1_1:31475980-31475999 Msa0018610:intron 25.0%
! AATAACTAAGAATGATAGGA+GGG + chr1_1:31476225-31476244 None:intergenic 25.0%
! TAATAACTAAGAATGATAGG+AGG + chr1_1:31476226-31476245 None:intergenic 25.0%
!!! GGTAATACAAGTGTTTTTTA+AGG + chr1_1:31476351-31476370 None:intergenic 25.0%
!! TTTAAAGCATGACATTTGAA+AGG - chr1_1:31476903-31476922 Msa0018610:CDS 25.0%
! TTAAAGCATGACATTTGAAA+GGG - chr1_1:31476904-31476923 Msa0018610:CDS 25.0%
! CATCAAATAACACAAATTAG+TGG + chr1_1:31477093-31477112 None:intergenic 25.0%
! TTGAAATGTATATAAATGGC+TGG + chr1_1:31477211-31477230 None:intergenic 25.0%
TTGAGAAGTTCAATGGAATA+GGG + chr1_1:31473763-31473782 None:intergenic 30.0%
ATTGAGAAGTTCAATGGAAT+AGG + chr1_1:31473764-31473783 None:intergenic 30.0%
!! TTGCTTGGTGTTTGTTTATT+GGG + chr1_1:31473795-31473814 None:intergenic 30.0%
GAAGGATAATAATACAAGCT+TGG + chr1_1:31473878-31473897 None:intergenic 30.0%
TGAGATTTATCTGTAACACA+GGG + chr1_1:31473900-31473919 None:intergenic 30.0%
ATTGAATGAAGGATTGAGTT+TGG + chr1_1:31473929-31473948 None:intergenic 30.0%
! GTCTTTTAACAACGATTTCT+TGG - chr1_1:31473987-31474006 Msa0018610:CDS 30.0%
! CTTTTAACAACGATTTCTTG+GGG - chr1_1:31473989-31474008 Msa0018610:CDS 30.0%
! TTTTAACAACGATTTCTTGG+GGG - chr1_1:31473990-31474009 Msa0018610:CDS 30.0%
ATGTTACCTTTCTTATAAGC+TGG + chr1_1:31474197-31474216 None:intergenic 30.0%
CGTGTTAGTGTTAGAATATT+TGG - chr1_1:31474318-31474337 Msa0018610:intron 30.0%
!!! TTTACTCTGTTTTAGAATCG+TGG - chr1_1:31474454-31474473 Msa0018610:intron 30.0%
GAACATGTGTTTATAAATGG+GGG + chr1_1:31474527-31474546 None:intergenic 30.0%
AGTGTTAAAGAGTCTCTAAT+CGG + chr1_1:31474564-31474583 None:intergenic 30.0%
AACTATATTACCTTCCAACA+TGG + chr1_1:31474600-31474619 None:intergenic 30.0%
GCATATAAGCTATAAAGACT+AGG - chr1_1:31474671-31474690 Msa0018610:intron 30.0%
! ACCACCAAACTAATTTTTCT+GGG + chr1_1:31474698-31474717 None:intergenic 30.0%
! TACCACCAAACTAATTTTTC+TGG + chr1_1:31474699-31474718 None:intergenic 30.0%
!! TTAGTGGTTGATTTGTTACA+GGG + chr1_1:31474792-31474811 None:intergenic 30.0%
ACTCACAGATTACTTACAAA+GGG + chr1_1:31474875-31474894 None:intergenic 30.0%
TACTCACAGATTACTTACAA+AGG + chr1_1:31474876-31474895 None:intergenic 30.0%
! ATCTTAACTTTTACCAAACG+TGG - chr1_1:31474937-31474956 Msa0018610:CDS 30.0%
!! TCAAATTAACATTTTGGTCG+AGG + chr1_1:31475009-31475028 None:intergenic 30.0%
GAGAAAAAGTGATATGAACT+AGG - chr1_1:31475151-31475170 Msa0018610:intron 30.0%
TATAAATTCAAAGCCCTTAG+TGG + chr1_1:31475179-31475198 None:intergenic 30.0%
TTTGAATGGTGCATAAAATC+TGG - chr1_1:31475208-31475227 Msa0018610:intron 30.0%
! GCACATTTGATTATCAGTTT+TGG - chr1_1:31475365-31475384 Msa0018610:intron 30.0%
TGTATCAAGCAAATATCCTT+CGG + chr1_1:31475553-31475572 None:intergenic 30.0%
TGAATAGATGACAATAACGA+AGG + chr1_1:31475767-31475786 None:intergenic 30.0%
GTGTTGTAAATAGCTTCTAA+TGG + chr1_1:31475898-31475917 None:intergenic 30.0%
GGATTTCTATGAAATTTGCA+GGG + chr1_1:31475928-31475947 None:intergenic 30.0%
TGGATTTCTATGAAATTTGC+AGG + chr1_1:31475929-31475948 None:intergenic 30.0%
ACACTTGTATTACCAATTGT+TGG - chr1_1:31476357-31476376 Msa0018610:intron 30.0%
TATACTTTGGACCAAGAATA+TGG - chr1_1:31476503-31476522 Msa0018610:intron 30.0%
ATATTTGTATAATCTCGCAG+AGG - chr1_1:31476539-31476558 Msa0018610:intron 30.0%
TATTTGTATAATCTCGCAGA+GGG - chr1_1:31476540-31476559 Msa0018610:intron 30.0%
CAAGATGAGAACTTATTTGT+AGG + chr1_1:31476880-31476899 None:intergenic 30.0%
AAAATACTTTATGGAGCTCA+TGG + chr1_1:31477041-31477060 None:intergenic 30.0%
CATTATACTTAACAGACTTC+AGG + chr1_1:31477160-31477179 None:intergenic 30.0%
! TGTTTGTTTATTGGGTTGTG+TGG + chr1_1:31473787-31473806 None:intergenic 35.0%
!! GTTGCTTGGTGTTTGTTTAT+TGG + chr1_1:31473796-31473815 None:intergenic 35.0%
ATTTATCTGTAACACAGGGA+AGG + chr1_1:31473896-31473915 None:intergenic 35.0%
GTGAGATTTATCTGTAACAC+AGG + chr1_1:31473901-31473920 None:intergenic 35.0%
!! CGGTTCTGAAAATTGAATGA+AGG + chr1_1:31473940-31473959 None:intergenic 35.0%
CAATTCGGAGAGAAAGTTAT+AGG - chr1_1:31474054-31474073 Msa0018610:intron 35.0%
! TGGGATAAGGATTTTGTGTT+CGG + chr1_1:31474091-31474110 None:intergenic 35.0%
GAGAAAGAGCAGAGATATTT+GGG + chr1_1:31474110-31474129 None:intergenic 35.0%
AGAGAAAGAGCAGAGATATT+TGG + chr1_1:31474111-31474130 None:intergenic 35.0%
TTAGCATCATCTTGAGAAAG+GGG + chr1_1:31474174-31474193 None:intergenic 35.0%
GTTAGCATCATCTTGAGAAA+GGG + chr1_1:31474175-31474194 None:intergenic 35.0%
TGCTAACCAGCTTATAAGAA+AGG - chr1_1:31474188-31474207 Msa0018610:intron 35.0%
TTGTTACGAAATGAGAGATG+AGG - chr1_1:31474411-31474430 Msa0018610:intron 35.0%
CTACCACAACCCAATAAAAT+GGG - chr1_1:31474483-31474502 Msa0018610:intron 35.0%
TGAGATTACATTCTCCATGT+TGG - chr1_1:31474583-31474602 Msa0018610:intron 35.0%
ATTACATTCTCCATGTTGGA+AGG - chr1_1:31474587-31474606 Msa0018610:intron 35.0%
AGGTCCCAGAAAAATTAGTT+TGG - chr1_1:31474691-31474710 Msa0018610:intron 35.0%
! TCCCAGAAAAATTAGTTTGG+TGG - chr1_1:31474694-31474713 Msa0018610:intron 35.0%
! ATTAGTTTGGTGGTATGAGT+TGG - chr1_1:31474704-31474723 Msa0018610:intron 35.0%
!! AACACAGAAGGAGTACTATT+AGG - chr1_1:31474727-31474746 Msa0018610:intron 35.0%
!! GTTAGTGGTTGATTTGTTAC+AGG + chr1_1:31474793-31474812 None:intergenic 35.0%
CTCACAGATTACTTACAAAG+GGG + chr1_1:31474874-31474893 None:intergenic 35.0%
! AAGCTTACATTTTCCACGTT+TGG + chr1_1:31474953-31474972 None:intergenic 35.0%
GCATAGCATATACATCTTCA+TGG + chr1_1:31475094-31475113 None:intergenic 35.0%
ATATGAACTAGGAACCACTA+AGG - chr1_1:31475162-31475181 Msa0018610:intron 35.0%
TATGAACTAGGAACCACTAA+GGG - chr1_1:31475163-31475182 Msa0018610:intron 35.0%
AGAGCAGAGTAGCATAAAAA+TGG + chr1_1:31475270-31475289 None:intergenic 35.0%
GATAATCAAATGTGCATCTG+AGG + chr1_1:31475360-31475379 None:intergenic 35.0%
ACTGCAAAGATATTGCTTTC+AGG - chr1_1:31475423-31475442 Msa0018610:intron 35.0%
! GTTGAACCCGTATTTTCATT+TGG - chr1_1:31475457-31475476 Msa0018610:intron 35.0%
GAACAGACTTTATCCGAAAA+TGG + chr1_1:31475529-31475548 None:intergenic 35.0%
AGAAGCTAGACAGTGTAAAA+TGG + chr1_1:31475949-31475968 None:intergenic 35.0%
!!! CATTTATGTAGGTTTTGGGT+TGG - chr1_1:31475985-31476004 Msa0018610:intron 35.0%
TACTTAAACTTCGATGCTTG+TGG - chr1_1:31476030-31476049 Msa0018610:intron 35.0%
GTTGTTCTATGTGGATATTG+GGG + chr1_1:31476130-31476149 None:intergenic 35.0%
GGTTGTTCTATGTGGATATT+GGG + chr1_1:31476131-31476150 None:intergenic 35.0%
TGGTTGTTCTATGTGGATAT+TGG + chr1_1:31476132-31476151 None:intergenic 35.0%
!! CTTGATTTGGTTGTTCTATG+TGG + chr1_1:31476139-31476158 None:intergenic 35.0%
! TTAAGGTTGCTTTGCAAACA+TGG + chr1_1:31476305-31476324 None:intergenic 35.0%
!! GATCTAAGTCTAGTTCTACT+CGG + chr1_1:31476384-31476403 None:intergenic 35.0%
AAACATGAGACTTTGCTCAA+GGG + chr1_1:31476406-31476425 None:intergenic 35.0%
GATTATAATCATCTGCAAGC+CGG - chr1_1:31476478-31476497 Msa0018610:intron 35.0%
GAGGAAAGAGGAATGATAAA+GGG + chr1_1:31476663-31476682 None:intergenic 35.0%
TACATAATCTCCATTAGGGA+AGG + chr1_1:31476685-31476704 None:intergenic 35.0%
TTCCCTAATGGAGATTATGT+AGG - chr1_1:31476684-31476703 Msa0018610:intron 35.0%
TGCCTACATAATCTCCATTA+GGG + chr1_1:31476689-31476708 None:intergenic 35.0%
! ACTGCCTAGTTTACGTTTTT+GGG + chr1_1:31476775-31476794 None:intergenic 35.0%
! AACTGCCTAGTTTACGTTTT+TGG + chr1_1:31476776-31476795 None:intergenic 35.0%
ATTTATGTGTGAAAATGGCC+TGG - chr1_1:31477280-31477299 Msa0018610:five_prime_UTR 35.0%
!! TTGTGTGGATTGGATTTGCT+TGG + chr1_1:31473724-31473743 None:intergenic 40.0%
!! GTTGTGTTGTTTGTGTGGAT+TGG + chr1_1:31473734-31473753 None:intergenic 40.0%
!! GTAGTGTTGTGTTGTTTGTG+TGG + chr1_1:31473739-31473758 None:intergenic 40.0%
! GTGTGGATTGAGAAGTTCAA+TGG + chr1_1:31473770-31473789 None:intergenic 40.0%
GAATGAAGGATTGAGTTTGG+TGG + chr1_1:31473926-31473945 None:intergenic 40.0%
TTTCAGAACCGTACTCCAAA+CGG - chr1_1:31473949-31473968 Msa0018610:three_prime_UTR 40.0%
TCGTTGTTAAAAGACCGAAG+TGG + chr1_1:31473982-31474001 None:intergenic 40.0%
! AACGATTTCTTGGGGGATTT+TGG - chr1_1:31473997-31474016 Msa0018610:CDS 40.0%
! ATTGACTTTCCAACTCAGCT+GGG + chr1_1:31474038-31474057 None:intergenic 40.0%
! AATTGACTTTCCAACTCAGC+TGG + chr1_1:31474039-31474058 None:intergenic 40.0%
! GCTGAGTTGGAAAGTCAATT+CGG - chr1_1:31474039-31474058 Msa0018610:CDS 40.0%
! GAGCAGAGATATTTGGGATA+AGG + chr1_1:31474104-31474123 None:intergenic 40.0%
TGCTCTTTCTCTTTCTCAAC+AGG - chr1_1:31474119-31474138 Msa0018610:intron 40.0%
TAGCATCATCTTGAGAAAGG+GGG + chr1_1:31474173-31474192 None:intergenic 40.0%
GGTTAGCATCATCTTGAGAA+AGG + chr1_1:31474176-31474195 None:intergenic 40.0%
TATTCTAACACTAACACGCG+TGG + chr1_1:31474316-31474335 None:intergenic 40.0%
GAGATGAGGATGTTTGAATC+AGG - chr1_1:31474425-31474444 Msa0018610:intron 40.0%
!!! CTCTGTTTTAGAATCGTGGT+CGG - chr1_1:31474458-31474477 Msa0018610:intron 40.0%
!!! TCTGTTTTAGAATCGTGGTC+GGG - chr1_1:31474459-31474478 Msa0018610:intron 40.0%
!! CCATTTTATTGGGTTGTGGT+AGG + chr1_1:31474485-31474504 None:intergenic 40.0%
CCTACCACAACCCAATAAAA+TGG - chr1_1:31474482-31474501 Msa0018610:intron 40.0%
!! AGACCCATTTTATTGGGTTG+TGG + chr1_1:31474489-31474508 None:intergenic 40.0%
! CCTGACAGACCCATTTTATT+GGG + chr1_1:31474495-31474514 None:intergenic 40.0%
! ACCTGACAGACCCATTTTAT+TGG + chr1_1:31474496-31474515 None:intergenic 40.0%
GTCTCTAATCGGACAAAAGA+TGG + chr1_1:31474553-31474572 None:intergenic 40.0%
! CAAGTAAGGATCAAAGCACT+TGG - chr1_1:31474649-31474668 Msa0018610:intron 40.0%
!! ACAGAAGGAGTACTATTAGG+AGG - chr1_1:31474730-31474749 Msa0018610:intron 40.0%
ACATAGGTTCAATTCTCGCT+AGG - chr1_1:31474842-31474861 Msa0018610:CDS 40.0%
!! AGGATCATTGACTCATGTTC+AGG + chr1_1:31474989-31475008 None:intergenic 40.0%
! AGTTCTGCTCTGACTTGATT+TGG + chr1_1:31476152-31476171 None:intergenic 40.0%
ATCAAGTCAGAGCAGAACTA+TGG - chr1_1:31476153-31476172 Msa0018610:intron 40.0%
GAACTATGGACAACATCCAT+TGG - chr1_1:31476167-31476186 Msa0018610:intron 40.0%
!! ATAAGAAGGGTACTGGTGTA+AGG + chr1_1:31476197-31476216 None:intergenic 40.0%
TAGGAGGGAGAAGATAAGAA+GGG + chr1_1:31476210-31476229 None:intergenic 40.0%
ATAGGAGGGAGAAGATAAGA+AGG + chr1_1:31476211-31476230 None:intergenic 40.0%
CAAACATGAGACTTTGCTCA+AGG + chr1_1:31476407-31476426 None:intergenic 40.0%
!!! CTACGTTTTTTCCACTCACA+AGG + chr1_1:31476432-31476451 None:intergenic 40.0%
TCTTGGTCCAAAGTATATGC+CGG + chr1_1:31476500-31476519 None:intergenic 40.0%
TGATTGCAAGTTCTCTGTAG+AGG - chr1_1:31476613-31476632 Msa0018610:intron 40.0%
GATTGCAAGTTCTCTGTAGA+GGG - chr1_1:31476614-31476633 Msa0018610:intron 40.0%
GAGGGTTTAACACACTATCA+TGG - chr1_1:31476632-31476651 Msa0018610:intron 40.0%
GGAGGAAAGAGGAATGATAA+AGG + chr1_1:31476664-31476683 None:intergenic 40.0%
ATAATCTCCATTAGGGAAGG+AGG + chr1_1:31476682-31476701 None:intergenic 40.0%
GTGCCTACATAATCTCCATT+AGG + chr1_1:31476690-31476709 None:intergenic 40.0%
GATTATGTAGGCACCAAACT+CGG - chr1_1:31476696-31476715 Msa0018610:intron 40.0%
CACACCCAAAAACGTAAACT+AGG - chr1_1:31476768-31476787 Msa0018610:intron 40.0%
CACTAGAGTTTGAGAACACT+AGG - chr1_1:31476806-31476825 Msa0018610:CDS 40.0%
! GAAAGGGTTCGATATTTTGC+AGG - chr1_1:31476920-31476939 Msa0018610:CDS 40.0%
TGGTCAATAATAGCCTCTGG+TGG + chr1_1:31473701-31473720 None:intergenic 45.0%
TGGTGGTCAATAATAGCCTC+TGG + chr1_1:31473704-31473723 None:intergenic 45.0%
!! TGTGGATTGGATTTGCTTGG+TGG + chr1_1:31473721-31473740 None:intergenic 45.0%
ACAAACACCAAGCAACACAG+AGG - chr1_1:31473800-31473819 Msa0018610:three_prime_UTR 45.0%
! ACTTCTTCCTCTGTGTTGCT+TGG + chr1_1:31473810-31473829 None:intergenic 45.0%
! TGAAGGATTGAGTTTGGTGG+TGG + chr1_1:31473923-31473942 None:intergenic 45.0%
TTCAGAACCGTACTCCAAAC+GGG - chr1_1:31473950-31473969 Msa0018610:three_prime_UTR 45.0%
TTTCCAACTCAGCTGGGAAA+GGG + chr1_1:31474032-31474051 None:intergenic 45.0%
GGTCTGTAAAGGTGAAATGG+GGG + chr1_1:31474151-31474170 None:intergenic 45.0%
GGGTCTGTAAAGGTGAAATG+GGG + chr1_1:31474152-31474171 None:intergenic 45.0%
GGGGTCTGTAAAGGTGAAAT+GGG + chr1_1:31474153-31474172 None:intergenic 45.0%
AGCATCATCTTGAGAAAGGG+GGG + chr1_1:31474172-31474191 None:intergenic 45.0%
CCCAATAAAATGGGTCTGTC+AGG - chr1_1:31474492-31474511 Msa0018610:intron 45.0%
TAAAATGGGTCTGTCAGGTG+AGG - chr1_1:31474497-31474516 Msa0018610:intron 45.0%
GTTGTAGCTGAAAACCACCA+AGG - chr1_1:31474617-31474636 Msa0018610:intron 45.0%
CTGAAAACCACCAAGGTTGA+TGG - chr1_1:31474624-31474643 Msa0018610:intron 45.0%
CTTACTTGCTCCATCAACCT+TGG + chr1_1:31474637-31474656 None:intergenic 45.0%
!! CAAGGTTGATGGAGCAAGTA+AGG - chr1_1:31474635-31474654 Msa0018610:intron 45.0%
! GGTATGAGTTGGAACACAGA+AGG - chr1_1:31474715-31474734 Msa0018610:intron 45.0%
! GGAGTACTATTAGGAGGTTC+AGG - chr1_1:31474736-31474755 Msa0018610:intron 45.0%
AAGGAAGTGACTCGATTCCA+AGG + chr1_1:31474915-31474934 None:intergenic 45.0%
TGAAGAGAAAGAAGACGACG+AGG - chr1_1:31475032-31475051 Msa0018610:intron 45.0%
GGATAAAGTCTGTTCACCGA+AGG - chr1_1:31475534-31475553 Msa0018610:intron 45.0%
TGGAGACTTGTGAACGATGA+AGG - chr1_1:31476005-31476024 Msa0018610:intron 45.0%
TCTACAGTTGTAGAGACTGC+AGG - chr1_1:31476098-31476117 Msa0018610:intron 45.0%
ACTGGTGTAAGGCTTACCAA+TGG + chr1_1:31476186-31476205 None:intergenic 45.0%
! GGAGAAGATAAGAAGGGTAC+TGG + chr1_1:31476204-31476223 None:intergenic 45.0%
GTTCTACTCGGACCAACAAT+TGG + chr1_1:31476372-31476391 None:intergenic 45.0%
TCATGTTTGTGCCTTGTGAG+TGG - chr1_1:31476418-31476437 Msa0018610:intron 45.0%
! AGGGTTCGATATTTTGCAGG+TGG - chr1_1:31476923-31476942 Msa0018610:CDS 45.0%
AGACATCAGATCTTGTCCCA+AGG - chr1_1:31476993-31477012 Msa0018610:CDS 45.0%
TTGTCCCAAGGAAAAGAGCT+TGG - chr1_1:31477005-31477024 Msa0018610:CDS 45.0%
TGTCCCAAGGAAAAGAGCTT+GGG - chr1_1:31477006-31477025 Msa0018610:CDS 45.0%
! AAGCCCAAGCTCTTTTCCTT+GGG + chr1_1:31477012-31477031 None:intergenic 45.0%
! TAAGCCCAAGCTCTTTTCCT+TGG + chr1_1:31477013-31477032 None:intergenic 45.0%
GATGGTGTATGCAGAAATCC+AGG + chr1_1:31477301-31477320 None:intergenic 45.0%
!! GTTAAAAATAAAAAAATAAT+AGG + chr1_1:31475721-31475740 None:intergenic 5.0%
CTCTGGTGGTAATAGTGTGG+TGG + chr1_1:31473687-31473706 None:intergenic 50.0%
CACCACACTATTACCACCAG+AGG - chr1_1:31473685-31473704 Msa0018610:three_prime_UTR 50.0%
AGCCTCTGGTGGTAATAGTG+TGG + chr1_1:31473690-31473709 None:intergenic 50.0%
! GAGAGAACCCGTTTGGAGTA+CGG + chr1_1:31473960-31473979 None:intergenic 50.0%
! CAAACGGGTTCTCTCCACTT+CGG - chr1_1:31473965-31473984 Msa0018610:exon 50.0%
CTTTCCAACTCAGCTGGGAA+AGG + chr1_1:31474033-31474052 None:intergenic 50.0%
GGGGGTCTGTAAAGGTGAAA+TGG + chr1_1:31474154-31474173 None:intergenic 50.0%
TGAGAAAGGGGGGTCTGTAA+AGG + chr1_1:31474162-31474181 None:intergenic 50.0%
ACTTGCTCCATCAACCTTGG+TGG + chr1_1:31474634-31474653 None:intergenic 50.0%
ACTCTTCAAAGCCGTGACCT+TGG - chr1_1:31474895-31474914 Msa0018610:CDS 50.0%
GTGACTCGATTCCAAGGTCA+CGG + chr1_1:31474909-31474928 None:intergenic 50.0%
CTGCAAGCCGGCATATACTT+TGG - chr1_1:31476490-31476509 Msa0018610:intron 50.0%
CCATTAGGGAAGGAGGAAAG+AGG + chr1_1:31476675-31476694 None:intergenic 50.0%
CCTCTTTCCTCCTTCCCTAA+TGG - chr1_1:31476672-31476691 Msa0018610:intron 50.0%
ATCAGAGCTTGCACCGAGTT+TGG + chr1_1:31476712-31476731 None:intergenic 50.0%
AACACTAGGCACCACTCTAG+TGG - chr1_1:31476820-31476839 Msa0018610:CDS 50.0%
AGAGCCTAGATGTGCCTATG+AGG + chr1_1:31476853-31476872 None:intergenic 50.0%
CGAAGTGGAGAGAACCCGTT+TGG + chr1_1:31473967-31473986 None:intergenic 55.0%
AGACCCTTTCCCAGCTGAGT+TGG - chr1_1:31474026-31474045 Msa0018610:CDS 55.0%
TAGGCACCACTCTAGTGGCA+GGG - chr1_1:31476825-31476844 Msa0018610:CDS 55.0%
GGCTCCTCATAGGCACATCT+AGG - chr1_1:31476846-31476865 Msa0018610:CDS 55.0%
CTAGGCACCACTCTAGTGGC+AGG - chr1_1:31476824-31476843 Msa0018610:CDS 60.0%
CTAGTGGCAGGGCTCCTCAT+AGG - chr1_1:31476836-31476855 Msa0018610:CDS 60.0%
GAGGAGCCCTGCCACTAGAG+TGG + chr1_1:31476834-31476853 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 31473683 31477330 31473683 ID=Msa0018610;Name=Msa0018610
chr1_1 mRNA 31473683 31477330 31473683 ID=Msa0018610-mRNA-1;Parent=Msa0018610;Name=Msa0018610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=182|1|1|1|1|1|3|297|209
chr1_1 exon 31473683 31474071 31473683 ID=Msa0018610-mRNA-1:exon:10359;Parent=Msa0018610-mRNA-1
chr1_1 exon 31474825 31475017 31474825 ID=Msa0018610-mRNA-1:exon:10358;Parent=Msa0018610-mRNA-1
chr1_1 exon 31476804 31477330 31476804 ID=Msa0018610-mRNA-1:exon:10357;Parent=Msa0018610-mRNA-1
chr1_1 five_prime_UTR 31477149 31477330 31477149 ID=Msa0018610-mRNA-1:five_prime_utr;Parent=Msa0018610-mRNA-1
chr1_1 CDS 31476804 31477148 31476804 ID=Msa0018610-mRNA-1:cds;Parent=Msa0018610-mRNA-1
chr1_1 CDS 31474825 31475017 31474825 ID=Msa0018610-mRNA-1:cds;Parent=Msa0018610-mRNA-1
chr1_1 CDS 31473980 31474071 31473980 ID=Msa0018610-mRNA-1:cds;Parent=Msa0018610-mRNA-1
chr1_1 three_prime_UTR 31473683 31473979 31473683 ID=Msa0018610-mRNA-1:three_prime_utr;Parent=Msa0018610-mRNA-1
Gene Sequence

>Msa0018610

ATGGCTACAACCAAGCTTGTATTATTATCCTTCCCTGTGTTACAGATAAATCTCACCACCACCAAACTCAATCCTTCATTCAATTTTCAGAACCGTACTCCAAACGGGTTCTCTCCACTTCGGTCTTTTAACAACGATTTCTTGGGGGATTTTGGAGCAAGAGACCCTTTCCCAGCTGAGTTGGAAAGTCAATTCGGAGAGAAAGTTATAGGTAGTTATAACACCGAACACAAAATCCTTATCCCAAATATCTCTGCTCTTTCTCTTTCTCAACAGGAGTGTACCCCCATTTCACCTTTACAGACCCCCCTTTCTCAAGATGATGCTAACCAGCTTATAAGAAAGGTTTTGGGTTGGAGACTTGTGAACGATGAAGGAGTACTTAAACTTCGATGCTTGTGGAAATTGAGAGATTTTAAATGCGGAGTTGAACTCATTAACAGAATCTCTACAGTTGTAGAGACTGCAGGACATTTCCCCAATATCCACATAGAACAACCAAATCAAGTCAGAGCAGAACTATGGACAACATCCATTGGTGGATTAAGTATGAATGATTTCATTGTAGCTGCAAAGATAGATGCAATACAGACATCAGATCTTGTCCCAAGGAAAAGAGCTTGGGCTTAA

Protein sequence

>Msa0018610

MATTKLVLLSFPVLQINLTTTKLNPSFNFQNRTPNGFSPLRSFNNDFLGDFGARDPFPAELESQFGEKVIGSYNTEHKILIPNISALSLSQQECTPISPLQTPLSQDDANQLIRKVLGWRLVNDEGVLKLRCLWKLRDFKCGVELINRISTVVETAGHFPNIHIEQPNQVRAELWTTSIGGLSMNDFIVAAKIDAIQTSDLVPRKRAWA*