AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1058550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1058550 MtrunA17_Chr7g0249441 93.590 312 15 2 1 311 1 308 0.0 549
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1058550 AT1G65230.1 62.909 275 86 5 42 311 23 286 1.61e-122 353

Find 82 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCAGCATGAAGAATTT+TGG 0.125608 7_2:-43517411 Msa1058550:CDS
AACTTACGAACTTCGCTATT+TGG 0.177925 7_2:+43515753 None:intergenic
GAATGACTTGTCCACTAATT+TGG 0.200921 7_2:+43517428 None:intergenic
AATTTGGTTAAGCGTAAATT+TGG 0.268859 7_2:+43517444 None:intergenic
ATCAGAGTTCTCTTCTTTCT+TGG 0.276153 7_2:+43517264 None:intergenic
CTGGTGTTTGTCTACGTATC+TGG 0.277689 7_2:-43518987 Msa1058550:five_prime_UTR
AAAATTAGCACTCAAATTCT+TGG 0.285342 7_2:+43517291 None:intergenic
TTCAGATGTTGCTGATAAAA+TGG 0.295505 7_2:-43518573 Msa1058550:CDS
GATATTTATCCAGATCCTTC+TGG 0.318352 7_2:-43517244 Msa1058550:CDS
TTTACGCTTAACCAAATTAG+TGG 0.347218 7_2:-43517439 Msa1058550:CDS
TGATGTTTAATGAAAACTTA+AGG 0.351733 7_2:-43519091 Msa1058550:five_prime_UTR
AAAAGTATAAGAGACCTCTA+TGG 0.372478 7_2:-43518281 Msa1058550:CDS
GATGTTTAATGAAAACTTAA+GGG 0.374615 7_2:-43519090 Msa1058550:five_prime_UTR
AGTATCAAGTGGACAATTAG+AGG 0.378287 7_2:-43517523 Msa1058550:CDS
TCAGAGTTCTCTTCTTTCTT+GGG 0.383027 7_2:+43517265 None:intergenic
ATTGTTTGCAGGATCCTATC+AGG 0.388892 7_2:-43518320 Msa1058550:intron
CACACTATCCTCCACGGAAT+GGG 0.402608 7_2:-43518941 Msa1058550:five_prime_UTR
ACACCAGCTAGAACAGATTT+AGG 0.403229 7_2:+43517496 None:intergenic
GGTTGAATCTGTGAAAGATT+TGG 0.404444 7_2:-43517323 Msa1058550:CDS
GTGGAGGATAGTGTGTTGTT+TGG 0.416104 7_2:+43518949 None:intergenic
GTAAAATGCAGATCACAATA+AGG 0.422991 7_2:+43516030 None:intergenic
TGGAGGATAGTGTGTTGTTT+GGG 0.425424 7_2:+43518950 None:intergenic
TTCGGTCCTATCAGCATCAT+TGG 0.433294 7_2:+43518628 None:intergenic
CTGCCAGGAGTAGTGCAATC+TGG 0.441053 7_2:+43516106 None:intergenic
TAATTTAAACTCACCACAGA+TGG 0.463620 7_2:+43518237 None:intergenic
TGCTGTTTCTGTCACTTACA+AGG 0.463924 7_2:-43518417 Msa1058550:intron
TTACGAACTTCGCTATTTGG+TGG 0.471028 7_2:+43515756 None:intergenic
GTTGGATCACCAGAAGGATC+TGG 0.473479 7_2:+43517235 None:intergenic
CGACCACTAAAACTCCTGAT+AGG 0.474517 7_2:+43518306 None:intergenic
GTTGAAAGCTGTCGTCCCTC+TGG 0.477736 7_2:+43516139 None:intergenic
ATCTTCACCTGCTAGTGCTC+AGG 0.479652 7_2:-43517380 Msa1058550:CDS
CTCGTGATATATTTGAGCTA+AGG 0.495749 7_2:-43518466 Msa1058550:CDS
CAGTTGCCAATGATGCTGAT+AGG 0.508689 7_2:-43518634 Msa1058550:CDS
GTTTGGGAAACAGACTGTGC+AGG 0.512122 7_2:-43517575 Msa1058550:intron
TCTGTTCTAGCTGGTGTAGG+AGG 0.514108 7_2:-43517490 Msa1058550:CDS
ATAAGAGAACTCACCTTGGT+TGG 0.519117 7_2:+43517217 None:intergenic
ATCGCGTGTTCTGTTTGCTA+CGG 0.519764 7_2:-43517344 Msa1058550:CDS
ATGGTTGATAGTATCGACTT+TGG 0.522738 7_2:-43518554 Msa1058550:CDS
GTGGTGATGACGGAAGGAGA+AGG 0.540371 7_2:+43518798 None:intergenic
TGTGGTATCAGATGATAGTT+CGG 0.542233 7_2:+43518610 None:intergenic
ACACACTATCCTCCACGGAA+TGG 0.543373 7_2:-43518942 Msa1058550:five_prime_UTR
AGGAGTGGGAATCGAGCACT+TGG 0.543642 7_2:-43518446 Msa1058550:CDS
AAGCCTAAATCTGTTCTAGC+TGG 0.546046 7_2:-43517499 Msa1058550:CDS
AATGCAGATCACAATAAGGC+AGG 0.555720 7_2:+43516034 None:intergenic
CTGTTCTAGCTGGTGTAGGA+GGG 0.562411 7_2:-43517489 Msa1058550:CDS
CCACAAAATATATAACTGCC+AGG 0.563060 7_2:+43516091 None:intergenic
TGGTGATGACGGAAGGAGAA+GGG 0.566529 7_2:+43518799 None:intergenic
ACGAGCAAGTTGTCTTGCAG+TGG 0.572718 7_2:+43518484 None:intergenic
ACTCCAGATTGCACTACTCC+TGG 0.574194 7_2:-43516109 Msa1058550:CDS
AAATCTGTTCTAGCTGGTGT+AGG 0.576290 7_2:-43517493 Msa1058550:CDS
CACCACTCTTCTTCATTGCG+AGG 0.581012 7_2:-43518772 Msa1058550:intron
AAAGTATAAGAGACCTCTAT+GGG 0.587841 7_2:-43518280 Msa1058550:CDS
AATTTAAACTCACCACAGAT+GGG 0.588338 7_2:+43518238 None:intergenic
GATATATTTGAGCTAAGGAG+TGG 0.589959 7_2:-43518461 Msa1058550:CDS
GTGGTGGTGGTGATGACGGA+AGG 0.590436 7_2:+43518792 None:intergenic
ACACTATCCTCCACGGAATG+GGG 0.594565 7_2:-43518940 Msa1058550:five_prime_UTR
TGAGTGCAATAGTAGTCCCT+CGG 0.596094 7_2:-43518513 Msa1058550:CDS
ATTCATGTCTCCCCATTCCG+TGG 0.596739 7_2:+43518930 None:intergenic
TGTTCTAGCTGGTGTAGGAG+GGG 0.597266 7_2:-43517488 Msa1058550:CDS
CTTGCAGTGGATTCAACCGA+GGG 0.597295 7_2:+43518497 None:intergenic
GTATCAAGTGGACAATTAGA+GGG 0.600715 7_2:-43517522 Msa1058550:CDS
GAACAAGAACAAGAAAGTGC+GGG 0.620208 7_2:+43518901 None:intergenic
ATGAAGAAGAGTGGTGGTGG+TGG 0.621338 7_2:+43518779 None:intergenic
TGTTGGATGTATTGTTGCGG+TGG 0.621579 7_2:+43518842 None:intergenic
GTTGCGGTGGAGTGCAGCGG+AGG 0.626825 7_2:+43518855 None:intergenic
GCATGTACGTACTACTATGT+TGG 0.627095 7_2:+43518825 None:intergenic
GGAGGAAAGAGAAGAAGTAG+CGG 0.628597 7_2:+43518873 None:intergenic
ATATATTTGAGCTAAGGAGT+GGG 0.636515 7_2:-43518460 Msa1058550:CDS
ACCTTGGTTGGATCACCAGA+AGG 0.644200 7_2:+43517229 None:intergenic
CTATGTTGGATGTATTGTTG+CGG 0.649341 7_2:+43518839 None:intergenic
AGAACAAGAACAAGAAAGTG+CGG 0.649734 7_2:+43518900 None:intergenic
TCTTGCAGTGGATTCAACCG+AGG 0.655059 7_2:+43518496 None:intergenic
AAACAACACACTATCCTCCA+CGG 0.657287 7_2:-43518947 Msa1058550:five_prime_UTR
CTCGCAATGAAGAAGAGTGG+TGG 0.661528 7_2:+43518773 None:intergenic
GTAAGTGACAGAAACAGCAT+AGG 0.662129 7_2:+43518421 None:intergenic
GCAATGAAGAAGAGTGGTGG+TGG 0.667864 7_2:+43518776 None:intergenic
TGCACTTGAAAACCCATCTG+TGG 0.671005 7_2:-43518250 Msa1058550:intron
TCCTTCTGGTGATCCAACCA+AGG 0.672407 7_2:-43517230 Msa1058550:intron
AGTGCAGTGATAGCCCATAG+AGG 0.679550 7_2:+43518267 None:intergenic
CATGTCTCCCCATTCCGTGG+AGG 0.679841 7_2:+43518933 None:intergenic
TACCTCGCAATGAAGAAGAG+TGG 0.682340 7_2:+43518770 None:intergenic
ATTGTTGCGGTGGAGTGCAG+CGG 0.685877 7_2:+43518852 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAGTCAAATTATTTTAT+AGG - chr7_2:43518289-43518308 Msa1058550:CDS 10.0%
!!! ATAAGGTATTATTCATTTTA+TGG + chr7_2:43515712-43515731 None:intergenic 15.0%
!!! TTTTTCCTTTTTAATTTGAT+GGG - chr7_2:43516651-43516670 Msa1058550:intron 15.0%
!! GATTGTATTATTCATTTATT+TGG - chr7_2:43518541-43518560 Msa1058550:CDS 15.0%
!!! CATTTTATGGAAAATTACAT+TGG + chr7_2:43515699-43515718 None:intergenic 20.0%
!! GAATATTGATATATGTTATG+TGG - chr7_2:43516092-43516111 Msa1058550:CDS 20.0%
!! ATAAAAGATATAAAGTCCAA+AGG + chr7_2:43516393-43516412 None:intergenic 20.0%
!!! ATGTTTTTTTTATTGTTTGC+AGG - chr7_2:43516429-43516448 Msa1058550:intron 20.0%
!!! GTTTTTCCTTTTTAATTTGA+TGG - chr7_2:43516650-43516669 Msa1058550:intron 20.0%
!! TAACAATTAAATTCGACAAA+AGG - chr7_2:43517134-43517153 Msa1058550:intron 20.0%
!!! TTATGATATCTGTTTTGTTT+GGG - chr7_2:43517169-43517188 Msa1058550:intron 20.0%
!!! TCATCTTATCTTTTATCTTA+AGG - chr7_2:43517594-43517613 Msa1058550:intron 20.0%
!!! GCTATTATCTTTTTTTTGAA+TGG - chr7_2:43517670-43517689 Msa1058550:intron 20.0%
!!! TTATTGTTTTTTTTTCTTCC+GGG + chr7_2:43517847-43517866 None:intergenic 20.0%
!!! GTTATTGTTTTTTTTTCTTC+CGG + chr7_2:43517848-43517867 None:intergenic 20.0%
!! AAAGAAATAAACTAGAAGAT+TGG + chr7_2:43518451-43518470 None:intergenic 20.0%
!!! TTTTTACCATTATTACATGA+TGG - chr7_2:43518475-43518494 Msa1058550:CDS 20.0%
!!! TTTCATGCTTCTTTTTTCTA+TGG + chr7_2:43515735-43515754 None:intergenic 25.0%
! TGAAAAAGAAGAAAAAGAAG+AGG - chr7_2:43515750-43515769 Msa1058550:three_prime_UTR 25.0%
! TACAAAATGTTGTCAGATAA+CGG - chr7_2:43516785-43516804 Msa1058550:intron 25.0%
! TAGAATGGTGAAATAAAACA+TGG + chr7_2:43517087-43517106 None:intergenic 25.0%
! GAAAGTGAAATCTAATAGAA+TGG + chr7_2:43517102-43517121 None:intergenic 25.0%
! AATTAAATTCGACAAAAGGA+AGG - chr7_2:43517138-43517157 Msa1058550:intron 25.0%
!!! GTTATGATATCTGTTTTGTT+TGG - chr7_2:43517168-43517187 Msa1058550:intron 25.0%
! AATTTGGTTAAGCGTAAATT+TGG + chr7_2:43517319-43517338 None:intergenic 25.0%
! AAAATTAGCACTCAAATTCT+TGG + chr7_2:43517472-43517491 None:intergenic 25.0%
!!! AAGGTATTTTGCTTACTTTT+TGG - chr7_2:43517613-43517632 Msa1058550:intron 25.0%
!!! TATTGTTTTTTTTTCTTCCG+GGG + chr7_2:43517846-43517865 None:intergenic 25.0%
! AAAAAAACAATAACACTTGC+AGG - chr7_2:43517854-43517873 Msa1058550:intron 25.0%
! AAAAAACAATAACACTTGCA+GGG - chr7_2:43517855-43517874 Msa1058550:intron 25.0%
!! AATGATATAATCTTTTCTGG+TGG + chr7_2:43518024-43518043 None:intergenic 25.0%
! CAGAAAAGATTATATCATTC+CGG - chr7_2:43518025-43518044 Msa1058550:intron 25.0%
!!! TTTTAGTTTGGCATGTTATT+TGG + chr7_2:43518066-43518085 None:intergenic 25.0%
!!! TCATTTTTAATAAGCTATCC+AGG + chr7_2:43518332-43518351 None:intergenic 25.0%
! TTCATACCATCATGTAATAA+TGG + chr7_2:43518484-43518503 None:intergenic 25.0%
!! TCTTTTCATGACTTAATTGT+TGG - chr7_2:43518576-43518595 Msa1058550:CDS 25.0%
!!! AAGCTTTTATGACTTTGTTT+AGG - chr7_2:43518868-43518887 Msa1058550:CDS 25.0%
!!! GCTTCTTTTTTCTATGGATA+AGG + chr7_2:43515729-43515748 None:intergenic 30.0%
!! TGAATATGATTTTTCAGCTG+TGG + chr7_2:43516171-43516190 None:intergenic 30.0%
TTCAGATGTTGCTGATAAAA+TGG - chr7_2:43516187-43516206 Msa1058550:intron 30.0%
ATATATTTGAGCTAAGGAGT+GGG - chr7_2:43516300-43516319 Msa1058550:intron 30.0%
! TGTCTTTAATGCTTTTCCTT+TGG - chr7_2:43516374-43516393 Msa1058550:intron 30.0%
! AAAAGTATAAGAGACCTCTA+TGG - chr7_2:43516479-43516498 Msa1058550:intron 30.0%
AAAGTATAAGAGACCTCTAT+GGG - chr7_2:43516480-43516499 Msa1058550:intron 30.0%
AATTTAAACTCACCACAGAT+GGG + chr7_2:43516525-43516544 None:intergenic 30.0%
TAATTTAAACTCACCACAGA+TGG + chr7_2:43516526-43516545 None:intergenic 30.0%
!! TGATTAGTCTATGAAGCAAT+AGG - chr7_2:43516546-43516565 Msa1058550:intron 30.0%
!! GATTAGTCTATGAAGCAATA+GGG - chr7_2:43516547-43516566 Msa1058550:intron 30.0%
TCTAGCCCATCAAATTAAAA+AGG + chr7_2:43516659-43516678 None:intergenic 30.0%
TATAGCACTGTAGTATATAG+TGG - chr7_2:43516713-43516732 Msa1058550:intron 30.0%
TATAACATACTGCAAAACAC+TGG + chr7_2:43516762-43516781 None:intergenic 30.0%
AAAGACATGAAATTGATCAG+TGG + chr7_2:43516919-43516938 None:intergenic 30.0%
AATCGATGGAATATATGAGA+AGG + chr7_2:43516959-43516978 None:intergenic 30.0%
!! GAAGTTTTTAAAGGAATCGA+TGG + chr7_2:43516973-43516992 None:intergenic 30.0%
! CCTCAAATGGAAGTTTTTAA+AGG + chr7_2:43516982-43517001 None:intergenic 30.0%
! CCTTTAAAAACTTCCATTTG+AGG - chr7_2:43516979-43516998 Msa1058550:intron 30.0%
!! CAAGTGTTTTAAGTATCAAG+TGG - chr7_2:43517226-43517245 Msa1058550:intron 30.0%
TTTACGCTTAACCAAATTAG+TGG - chr7_2:43517321-43517340 Msa1058550:CDS 30.0%
! TCATTCAGCATGAAGAATTT+TGG - chr7_2:43517349-43517368 Msa1058550:CDS 30.0%
! CATTCAGCATGAAGAATTTT+GGG - chr7_2:43517350-43517369 Msa1058550:CDS 30.0%
CTAGAAGAATCTTAAACTTG+TGG - chr7_2:43517566-43517585 Msa1058550:intron 30.0%
TCTACTATGAGTGCTTAATT+AGG + chr7_2:43517647-43517666 None:intergenic 30.0%
!!! TTTTTTGATTGCTGTTTTGG+CGG + chr7_2:43517742-43517761 None:intergenic 30.0%
!!! GTGTTTTTTGATTGCTGTTT+TGG + chr7_2:43517745-43517764 None:intergenic 30.0%
AACACAACAAAAAAAACCTG+AGG - chr7_2:43517760-43517779 Msa1058550:intron 30.0%
ACACAACAAAAAAAACCTGA+GGG - chr7_2:43517761-43517780 Msa1058550:intron 30.0%
!!! TTTCTCTTTTTGGTGTTTCT+GGG + chr7_2:43517820-43517839 None:intergenic 30.0%
!!! TTTTCTCTTTTTGGTGTTTC+TGG + chr7_2:43517821-43517840 None:intergenic 30.0%
! CGGAATGATATAATCTTTTC+TGG + chr7_2:43518027-43518046 None:intergenic 30.0%
AATGAGCTGAAAACAACTTA+CGG - chr7_2:43518347-43518366 Msa1058550:intron 30.0%
! ATTTTATTCAGTTCTTCCAG+AGG - chr7_2:43518605-43518624 Msa1058550:CDS 30.0%
! TTTTATTCAGTTCTTCCAGA+GGG - chr7_2:43518606-43518625 Msa1058550:CDS 30.0%
GTAAAATGCAGATCACAATA+AGG + chr7_2:43518733-43518752 None:intergenic 30.0%
!!! TCGTAAGTTGTTTTAGAGTA+CGG - chr7_2:43519021-43519040 Msa1058550:five_prime_UTR 30.0%
AAAGAAGAAAAAGAAGAGGC+TGG - chr7_2:43515754-43515773 Msa1058550:three_prime_UTR 35.0%
AGAACAAGAACAAGAAAGTG+CGG + chr7_2:43515863-43515882 None:intergenic 35.0%
CTATGTTGGATGTATTGTTG+CGG + chr7_2:43515924-43515943 None:intergenic 35.0%
TGTGGTATCAGATGATAGTT+CGG + chr7_2:43516153-43516172 None:intergenic 35.0%
!! ATGGTTGATAGTATCGACTT+TGG - chr7_2:43516206-43516225 Msa1058550:intron 35.0%
CTCGTGATATATTTGAGCTA+AGG - chr7_2:43516294-43516313 Msa1058550:intron 35.0%
GATATATTTGAGCTAAGGAG+TGG - chr7_2:43516299-43516318 Msa1058550:intron 35.0%
TCTTAGACAGTTACCTCAAA+TGG + chr7_2:43516995-43517014 None:intergenic 35.0%
AAATTCGACAAAAGGAAGGT+AGG - chr7_2:43517142-43517161 Msa1058550:intron 35.0%
AGTATCAAGTGGACAATTAG+AGG - chr7_2:43517237-43517256 Msa1058550:CDS 35.0%
GTATCAAGTGGACAATTAGA+GGG - chr7_2:43517238-43517257 Msa1058550:CDS 35.0%
! GAATGACTTGTCCACTAATT+TGG + chr7_2:43517335-43517354 None:intergenic 35.0%
GGTTGAATCTGTGAAAGATT+TGG - chr7_2:43517437-43517456 Msa1058550:CDS 35.0%
TCAGAGTTCTCTTCTTTCTT+GGG + chr7_2:43517498-43517517 None:intergenic 35.0%
ATCAGAGTTCTCTTCTTTCT+TGG + chr7_2:43517499-43517518 None:intergenic 35.0%
GATATTTATCCAGATCCTTC+TGG - chr7_2:43517516-43517535 Msa1058550:CDS 35.0%
!! GAATCAGTAAGGTTTTGTCA+TGG + chr7_2:43517971-43517990 None:intergenic 35.0%
! GCATGTTATTTGGACCAAAT+TGG + chr7_2:43518056-43518075 None:intergenic 35.0%
!!! GATTAGGGTTGCTTTTAGTT+TGG + chr7_2:43518078-43518097 None:intergenic 35.0%
!! GTTGTTTTCATAAACTGTCC+TGG - chr7_2:43518311-43518330 Msa1058550:CDS 35.0%
ATGAGCTGAAAACAACTTAC+GGG - chr7_2:43518348-43518367 Msa1058550:intron 35.0%
CCACAAAATATATAACTGCC+AGG + chr7_2:43518672-43518691 None:intergenic 35.0%
! CCTGGCAGTTATATATTTTG+TGG - chr7_2:43518669-43518688 Msa1058550:intron 35.0%
AACTTACGAACTTCGCTATT+TGG + chr7_2:43519010-43519029 None:intergenic 35.0%
!!! CGTAAGTTGTTTTAGAGTAC+GGG - chr7_2:43519022-43519041 Msa1058550:five_prime_UTR 35.0%
!!! GTAAGTTGTTTTAGAGTACG+GGG - chr7_2:43519023-43519042 Msa1058550:five_prime_UTR 35.0%
!! TGGAGGATAGTGTGTTGTTT+GGG + chr7_2:43515813-43515832 None:intergenic 40.0%
AAACAACACACTATCCTCCA+CGG - chr7_2:43515813-43515832 Msa1058550:three_prime_UTR 40.0%
! GAACAAGAACAAGAAAGTGC+GGG + chr7_2:43515862-43515881 None:intergenic 40.0%
GCATGTACGTACTACTATGT+TGG + chr7_2:43515938-43515957 None:intergenic 40.0%
GTAAGTGACAGAAACAGCAT+AGG + chr7_2:43516342-43516361 None:intergenic 40.0%
!! TGCTGTTTCTGTCACTTACA+AGG - chr7_2:43516343-43516362 Msa1058550:intron 40.0%
ATTGTTTGCAGGATCCTATC+AGG - chr7_2:43516440-43516459 Msa1058550:intron 40.0%
!! GATCCTATCAGGAGTTTTAG+TGG - chr7_2:43516451-43516470 Msa1058550:intron 40.0%
ATCTCAGTGATGTCAGATAG+CGG - chr7_2:43516687-43516706 Msa1058550:intron 40.0%
AAGCCTAAATCTGTTCTAGC+TGG - chr7_2:43517261-43517280 Msa1058550:CDS 40.0%
ACACCAGCTAGAACAGATTT+AGG + chr7_2:43517267-43517286 None:intergenic 40.0%
! AAATCTGTTCTAGCTGGTGT+AGG - chr7_2:43517267-43517286 Msa1058550:CDS 40.0%
ATAAGAGAACTCACCTTGGT+TGG + chr7_2:43517546-43517565 None:intergenic 40.0%
CTAGATAAGAGAACTCACCT+TGG + chr7_2:43517550-43517569 None:intergenic 40.0%
ACCAAAAAGAGAAAACACCC+CGG - chr7_2:43517826-43517845 Msa1058550:intron 40.0%
!! AACCTTACTGATTCCAGCAA+AGG - chr7_2:43517977-43517996 Msa1058550:intron 40.0%
TTCCTTTGCTGGAATCAGTA+AGG + chr7_2:43517982-43518001 None:intergenic 40.0%
!! TTACTGATTCCAGCAAAGGA+AGG - chr7_2:43517981-43518000 Msa1058550:intron 40.0%
!! TACTGATTCCAGCAAAGGAA+GGG - chr7_2:43517982-43518001 Msa1058550:intron 40.0%
TCATTCCGGAAAGTCCAATT+TGG - chr7_2:43518039-43518058 Msa1058550:intron 40.0%
TTGGACCAAATTGGACTTTC+CGG + chr7_2:43518047-43518066 None:intergenic 40.0%
CTACAGTTTCTGAGTTTCCT+GGG + chr7_2:43518124-43518143 None:intergenic 40.0%
CAGGAAACTCAGAAACTGTA+GGG - chr7_2:43518123-43518142 Msa1058550:intron 40.0%
GCAAAAGATAAACAGAAGCG+CGG - chr7_2:43518219-43518238 Msa1058550:intron 40.0%
! ATTTTGTGGTACAAGCTCTG+AGG - chr7_2:43518683-43518702 Msa1058550:intron 40.0%
AATGCAGATCACAATAAGGC+AGG + chr7_2:43518729-43518748 None:intergenic 40.0%
TTACGAACTTCGCTATTTGG+TGG + chr7_2:43519007-43519026 None:intergenic 40.0%
CTGGTGTTTGTCTACGTATC+TGG - chr7_2:43515773-43515792 Msa1058550:three_prime_UTR 45.0%
! GTGGAGGATAGTGTGTTGTT+TGG + chr7_2:43515814-43515833 None:intergenic 45.0%
GGAGGAAAGAGAAGAAGTAG+CGG + chr7_2:43515890-43515909 None:intergenic 45.0%
TGTTGGATGTATTGTTGCGG+TGG + chr7_2:43515921-43515940 None:intergenic 45.0%
TACCTCGCAATGAAGAAGAG+TGG + chr7_2:43515993-43516012 None:intergenic 45.0%
CAGTTGCCAATGATGCTGAT+AGG - chr7_2:43516126-43516145 Msa1058550:CDS 45.0%
TTCGGTCCTATCAGCATCAT+TGG + chr7_2:43516135-43516154 None:intergenic 45.0%
TGAGTGCAATAGTAGTCCCT+CGG - chr7_2:43516247-43516266 Msa1058550:intron 45.0%
CGACCACTAAAACTCCTGAT+AGG + chr7_2:43516457-43516476 None:intergenic 45.0%
TGCACTTGAAAACCCATCTG+TGG - chr7_2:43516510-43516529 Msa1058550:intron 45.0%
! GTTGTCAGATAACGGCTAAG+CGG - chr7_2:43516793-43516812 Msa1058550:intron 45.0%
ATGTCGTCAATCGCGAATAG+CGG + chr7_2:43516855-43516874 None:intergenic 45.0%
AAAAATGCCTGAGCACTAGC+AGG + chr7_2:43517390-43517409 None:intergenic 45.0%
! CTAGTGCTCAGGCATTTTTC+TGG - chr7_2:43517391-43517410 Msa1058550:CDS 45.0%
! ATCGCGTGTTCTGTTTGCTA+CGG - chr7_2:43517416-43517435 Msa1058550:CDS 45.0%
!! TCCGGGGTGTTTTCTCTTTT+TGG + chr7_2:43517830-43517849 None:intergenic 45.0%
AGATAGAGAGAGACATCTCG+AGG - chr7_2:43517882-43517901 Msa1058550:intron 45.0%
GATAGAGAGAGACATCTCGA+GGG - chr7_2:43517883-43517902 Msa1058550:intron 45.0%
ATAGAGAGAGACATCTCGAG+GGG - chr7_2:43517884-43517903 Msa1058550:intron 45.0%
CGGGGAAGAGAGTTAGATTA+GGG + chr7_2:43518093-43518112 None:intergenic 45.0%
TCGGGGAAGAGAGTTAGATT+AGG + chr7_2:43518094-43518113 None:intergenic 45.0%
TTCTGAGTTTCCTGGGCTTA+GGG + chr7_2:43518117-43518136 None:intergenic 45.0%
TTTCTGAGTTTCCTGGGCTT+AGG + chr7_2:43518118-43518137 None:intergenic 45.0%
CCTACAGTTTCTGAGTTTCC+TGG + chr7_2:43518125-43518144 None:intergenic 45.0%
CCAGGAAACTCAGAAACTGT+AGG - chr7_2:43518122-43518141 Msa1058550:intron 45.0%
AACTCAGAAACTGTAGGGCT+AGG - chr7_2:43518128-43518147 Msa1058550:intron 45.0%
!! TATCAGCTCTCTGGTTTGCT+GGG + chr7_2:43518178-43518197 None:intergenic 45.0%
GCACATCTACTCTTACTGTG+TGG + chr7_2:43518201-43518220 None:intergenic 45.0%
TCTCTCAAGTAGTCTCGCAA+GGG - chr7_2:43518396-43518415 Msa1058550:intron 45.0%
ACACACTATCCTCCACGGAA+TGG - chr7_2:43515818-43515837 Msa1058550:three_prime_UTR 50.0%
CACACTATCCTCCACGGAAT+GGG - chr7_2:43515819-43515838 Msa1058550:three_prime_UTR 50.0%
ACACTATCCTCCACGGAATG+GGG - chr7_2:43515820-43515839 Msa1058550:three_prime_UTR 50.0%
ATTCATGTCTCCCCATTCCG+TGG + chr7_2:43515833-43515852 None:intergenic 50.0%
!! TGGTGATGACGGAAGGAGAA+GGG + chr7_2:43515964-43515983 None:intergenic 50.0%
!! ATGAAGAAGAGTGGTGGTGG+TGG + chr7_2:43515984-43516003 None:intergenic 50.0%
GCAATGAAGAAGAGTGGTGG+TGG + chr7_2:43515987-43516006 None:intergenic 50.0%
CTCGCAATGAAGAAGAGTGG+TGG + chr7_2:43515990-43516009 None:intergenic 50.0%
CACCACTCTTCTTCATTGCG+AGG - chr7_2:43515988-43516007 Msa1058550:three_prime_UTR 50.0%
! CTTGCAGTGGATTCAACCGA+GGG + chr7_2:43516266-43516285 None:intergenic 50.0%
! TCTTGCAGTGGATTCAACCG+AGG + chr7_2:43516267-43516286 None:intergenic 50.0%
ACGAGCAAGTTGTCTTGCAG+TGG + chr7_2:43516279-43516298 None:intergenic 50.0%
AGTGCAGTGATAGCCCATAG+AGG + chr7_2:43516496-43516515 None:intergenic 50.0%
GTTTGGGAAACAGACTGTGC+AGG - chr7_2:43517185-43517204 Msa1058550:intron 50.0%
! TCTGTTCTAGCTGGTGTAGG+AGG - chr7_2:43517270-43517289 Msa1058550:CDS 50.0%
! CTGTTCTAGCTGGTGTAGGA+GGG - chr7_2:43517271-43517290 Msa1058550:CDS 50.0%
! TGTTCTAGCTGGTGTAGGAG+GGG - chr7_2:43517272-43517291 Msa1058550:CDS 50.0%
ATCTTCACCTGCTAGTGCTC+AGG - chr7_2:43517380-43517399 Msa1058550:CDS 50.0%
GTTGGATCACCAGAAGGATC+TGG + chr7_2:43517528-43517547 None:intergenic 50.0%
TCCTTCTGGTGATCCAACCA+AGG - chr7_2:43517530-43517549 Msa1058550:CDS 50.0%
ACCTTGGTTGGATCACCAGA+AGG + chr7_2:43517534-43517553 None:intergenic 50.0%
TCCTTTGTTGGGGTGTGAGT+TGG + chr7_2:43517787-43517806 None:intergenic 50.0%
TCACACCCCAACAAAGGACA+CGG - chr7_2:43517789-43517808 Msa1058550:intron 50.0%
TAGCTCCGTGTCCTTTGTTG+GGG + chr7_2:43517797-43517816 None:intergenic 50.0%
GTAGCTCCGTGTCCTTTGTT+GGG + chr7_2:43517798-43517817 None:intergenic 50.0%
AAACTGTAGGGCTAGGCCTA+GGG - chr7_2:43518135-43518154 Msa1058550:intron 50.0%
! GTATCAGCTCTCTGGTTTGC+TGG + chr7_2:43518179-43518198 None:intergenic 50.0%
ACTGTGTGGTATCAGCTCTC+TGG + chr7_2:43518187-43518206 None:intergenic 50.0%
CTCTCTCAAGTAGTCTCGCA+AGG - chr7_2:43518395-43518414 Msa1058550:intron 50.0%
ACTCCAGATTGCACTACTCC+TGG - chr7_2:43518651-43518670 Msa1058550:intron 50.0%
ATTGTTGCGGTGGAGTGCAG+CGG + chr7_2:43515911-43515930 None:intergenic 55.0%
!! GTGGTGATGACGGAAGGAGA+AGG + chr7_2:43515965-43515984 None:intergenic 55.0%
!! AGTGGTGGTGGTGGTGATGA+CGG + chr7_2:43515975-43515994 None:intergenic 55.0%
AGGAGTGGGAATCGAGCACT+TGG - chr7_2:43516314-43516333 Msa1058550:intron 55.0%
! CGCGAATAGCGGAAGATAGC+TGG + chr7_2:43516844-43516863 None:intergenic 55.0%
!!! TGCTGTTTTGGCGGCGCTTT+TGG + chr7_2:43517733-43517752 None:intergenic 55.0%
GCCAACTCACACCCCAACAA+AGG - chr7_2:43517783-43517802 Msa1058550:intron 55.0%
GGTAGCTCCGTGTCCTTTGT+TGG + chr7_2:43517799-43517818 None:intergenic 55.0%
TTGTCATGGAGTCGAGCCTG+AGG + chr7_2:43517957-43517976 None:intergenic 55.0%
CAAAGGAAGGGCTCCACTGA+AGG - chr7_2:43517994-43518013 Msa1058550:intron 55.0%
! TTCTGGTGGCTTGCCTTCAG+TGG + chr7_2:43518010-43518029 None:intergenic 55.0%
AGTTTCCTGGGCTTAGGGTC+GGG + chr7_2:43518112-43518131 None:intergenic 55.0%
GAGTTTCCTGGGCTTAGGGT+CGG + chr7_2:43518113-43518132 None:intergenic 55.0%
GAAACTGTAGGGCTAGGCCT+AGG - chr7_2:43518134-43518153 Msa1058550:intron 55.0%
AACTGTAGGGCTAGGCCTAG+GGG - chr7_2:43518136-43518155 Msa1058550:intron 55.0%
TGGGTGTCTGTGTTTCCCCT+AGG + chr7_2:43518154-43518173 None:intergenic 55.0%
!! GCTCTCTGGTTTGCTGGGTT+GGG + chr7_2:43518173-43518192 None:intergenic 55.0%
!! AGCTCTCTGGTTTGCTGGGT+TGG + chr7_2:43518174-43518193 None:intergenic 55.0%
GTTGAAAGCTGTCGTCCCTC+TGG + chr7_2:43518624-43518643 None:intergenic 55.0%
CTGCCAGGAGTAGTGCAATC+TGG + chr7_2:43518657-43518676 None:intergenic 55.0%
CATGTCTCCCCATTCCGTGG+AGG + chr7_2:43515830-43515849 None:intergenic 60.0%
!! GTGGTGGTGGTGATGACGGA+AGG + chr7_2:43515971-43515990 None:intergenic 60.0%
GAGAGAGACATCTCGAGGGG+AGG - chr7_2:43517887-43517906 Msa1058550:intron 60.0%
GAGACATCTCGAGGGGAGGA+CGG - chr7_2:43517891-43517910 Msa1058550:intron 60.0%
TCGAGGGGAGGACGGACAAA+GGG - chr7_2:43517899-43517918 Msa1058550:intron 60.0%
CAGTGGAGCCCTTCCTTTGC+TGG + chr7_2:43517993-43518012 None:intergenic 60.0%
GTTTCCTGGGCTTAGGGTCG+GGG + chr7_2:43518111-43518130 None:intergenic 60.0%
! TGGGGTGTGAGTTGGCCCTC+AGG + chr7_2:43517779-43517798 None:intergenic 65.0%
CTCGAGGGGAGGACGGACAA+AGG - chr7_2:43517898-43517917 Msa1058550:intron 65.0%
AGGGGAGGACGGACAAAGGG+AGG - chr7_2:43517902-43517921 Msa1058550:intron 65.0%
TGAGGCTGTCTGCAGGGTGG+GGG + chr7_2:43517939-43517958 None:intergenic 65.0%
CTGAGGCTGTCTGCAGGGTG+GGG + chr7_2:43517940-43517959 None:intergenic 65.0%
CCTGAGGCTGTCTGCAGGGT+GGG + chr7_2:43517941-43517960 None:intergenic 65.0%
CGAGCCTGAGGCTGTCTGCA+GGG + chr7_2:43517945-43517964 None:intergenic 65.0%
TCGAGCCTGAGGCTGTCTGC+AGG + chr7_2:43517946-43517965 None:intergenic 65.0%
TCTTCCCCGACCCTAAGCCC+AGG - chr7_2:43518104-43518123 Msa1058550:intron 65.0%
GTTGCGGTGGAGTGCAGCGG+AGG + chr7_2:43515908-43515927 None:intergenic 70.0%
GCTGTCTGCAGGGTGGGGGT+GGG + chr7_2:43517935-43517954 None:intergenic 70.0%
CCCACCCTGCAGACAGCCTC+AGG - chr7_2:43517938-43517957 Msa1058550:intron 70.0%
GCCTGAGGCTGTCTGCAGGG+TGG + chr7_2:43517942-43517961 None:intergenic 70.0%
GGCTGTCTGCAGGGTGGGGG+TGG + chr7_2:43517936-43517955 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 43515671 43519111 43515671 ID=Msa1058550;Name=Msa1058550
chr7_2 mRNA 43515671 43519111 43515671 ID=Msa1058550-mRNA-1;Parent=Msa1058550;Name=Msa1058550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=176|1|1|1|0.75|1|5|394|311
chr7_2 exon 43515671 43516166 43515671 ID=Msa1058550-mRNA-1:exon:7834;Parent=Msa1058550-mRNA-1
chr7_2 exon 43517231 43517584 43517231 ID=Msa1058550-mRNA-1:exon:7833;Parent=Msa1058550-mRNA-1
chr7_2 exon 43518251 43518331 43518251 ID=Msa1058550-mRNA-1:exon:7832;Parent=Msa1058550-mRNA-1
chr7_2 exon 43518418 43518653 43518418 ID=Msa1058550-mRNA-1:exon:7831;Parent=Msa1058550-mRNA-1
chr7_2 exon 43518773 43519111 43518773 ID=Msa1058550-mRNA-1:exon:7830;Parent=Msa1058550-mRNA-1
chr7_2 five_prime_UTR 43518936 43519111 43518936 ID=Msa1058550-mRNA-1:five_prime_utr;Parent=Msa1058550-mRNA-1
chr7_2 CDS 43518773 43518935 43518773 ID=Msa1058550-mRNA-1:cds;Parent=Msa1058550-mRNA-1
chr7_2 CDS 43518418 43518653 43518418 ID=Msa1058550-mRNA-1:cds;Parent=Msa1058550-mRNA-1
chr7_2 CDS 43518251 43518331 43518251 ID=Msa1058550-mRNA-1:cds;Parent=Msa1058550-mRNA-1
chr7_2 CDS 43517231 43517584 43517231 ID=Msa1058550-mRNA-1:cds;Parent=Msa1058550-mRNA-1
chr7_2 CDS 43516065 43516166 43516065 ID=Msa1058550-mRNA-1:cds;Parent=Msa1058550-mRNA-1
chr7_2 three_prime_UTR 43515671 43516064 43515671 ID=Msa1058550-mRNA-1:three_prime_utr;Parent=Msa1058550-mRNA-1
Gene Sequence

>Msa1058550

ATGAATCTGACACCCGCACTTTCTTGTTCTTGTTCTCTCGCCGCTACTTCTTCTCTTTCCTCCGCTGCACTCCACCGCAACAATACATCCAACATAGTAGTACGTACATGCACACCCTTCTCCTTCCGTCATCACCACCACCACCACTCTTCTTCATTGCGAGTTGCCAATGATGCTGATAGGACCGAACTATCATCTGATACCACAGCTGAAAAATCATATTCAGATGTTGCTGATAAAATGGTTGATAGTATCGACTTTGGTGAGCTATGTAATGAGTTTGAGTGCAATAGTAGTCCCTCGGTTGAATCCACTGCAAGACAACTTGCTCGTGATATATTTGAGCTAAGGAGTGGGAATCGAGCACTTGGAACCTATGCTGTTTCTGTCACTTACAAGGATCCTATCAGGAGTTTTAGTGGTCGTGAAAAGTATAAGAGACCTCTATGGGCTATCACTGCACTTGAAAACCCATCTGTGACTGTGCAGGAAATGACAATGCTGTCAACAAGTGTTTTAAGTATCAAGTGGACAATTAGAGGGAAGCCTAAATCTGTTCTAGCTGGTGTAGGAGGGGAACTCATACTTAGAGTTACTTCCAAATTTACGCTTAACCAAATTAGTGGACAAGTCATTCAGCATGAAGAATTTTGGGACTTATCATCTTCACCTGCTAGTGCTCAGGCATTTTTCTGGTCATCGCGTGTTCTGTTTGCTACGGTTGAATCTGTGAAAGATTTGGTTGATAGTGCCAAGAATTTGAGTGCTAATTTTTCACCCAAGAAAGAAGAGAACTCTGATATTTATCCAGATCCTTCTGGTGATCCAACCAAGTTCTTCCAGAGGGACGACAGCTTTCAACAAGATGTACTCCAGATTGCACTACTCCTGGCAGTTATATATTTTGTGGTACAAGCTCTGAGGATAACTTTGTAA

Protein sequence

>Msa1058550

MNLTPALSCSCSLAATSSLSSAALHRNNTSNIVVRTCTPFSFRHHHHHHSSSLRVANDADRTELSSDTTAEKSYSDVADKMVDSIDFGELCNEFECNSSPSVESTARQLARDIFELRSGNRALGTYAVSVTYKDPIRSFSGREKYKRPLWAITALENPSVTVQEMTMLSTSVLSIKWTIRGKPKSVLAGVGGELILRVTSKFTLNQISGQVIQHEEFWDLSSSPASAQAFFWSSRVLFATVESVKDLVDSAKNLSANFSPKKEENSDIYPDPSGDPTKFFQRDDSFQQDVLQIALLLAVIYFVVQALRITL*