AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711860 MtrunA17_Chr5g0396291 98.162 272 4 1 1 271 1 272 0.0 545
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711860 AT1G71500.1 80.769 208 40 0 63 270 79 286 3.65e-117 337

Find 98 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGGTAAAGCAGCTGTTAT+TGG 0.227563 5_1:+3750349 Msa0711860:CDS
CAATGCTTCCAAACGCAATT+TGG 0.233273 5_1:-3750552 None:intergenic
CAATCGATGCAAGATTTCTT+TGG 0.246671 5_1:-3750799 None:intergenic
TTTGAAGGGGACAGGTTTCT+TGG 0.252403 5_1:+3750417 Msa0711860:CDS
TACATGATGAGTTTAGTTTC+TGG 0.288384 5_1:+3750678 Msa0711860:three_prime_UTR
AAATATTTGCCATTGAAAAT+AGG 0.303614 5_1:+3748725 Msa0711860:CDS
TATTGGATTCCTTCTGTTGT+TGG 0.321162 5_1:+3750366 Msa0711860:CDS
AATTAGACATTGGCCGTGTT+TGG 0.329014 5_1:+3750469 Msa0711860:exon
GATGAGAGTCAACTGGGATT+TGG 0.344981 5_1:+3750301 Msa0711860:CDS
TCTTTCTGTTTCTGCATTTG+TGG 0.346349 5_1:-3748368 None:intergenic
TGTTTGGATGCACATATCTT+TGG 0.363824 5_1:+3750845 Msa0711860:three_prime_UTR
GAAGAGCAGGAGAGGGATAG+AGG 0.369307 5_1:-3748451 None:intergenic
AGCGCCGTCACCGGCACAAC+CGG 0.370822 5_1:-3748634 None:intergenic
GTGACCAATCGCAAAGACTT+TGG 0.373345 5_1:-3748556 None:intergenic
TAGTTACAAGGCATACAAAA+AGG 0.378739 5_1:-3750641 None:intergenic
ACTCTCAGAACAGCATTGTT+TGG 0.384246 5_1:-3750007 None:intergenic
AGGTTGTAAAATTCATTTCC+AGG 0.388562 5_1:+3750872 Msa0711860:three_prime_UTR
AGTGTGTGTTTGAGAAGAGC+AGG 0.401321 5_1:-3748464 None:intergenic
TGGCGGGAGAGGAGAAGAAA+AGG 0.404281 5_1:-3748514 None:intergenic
CAAATTGCGTTTGGAAGCAT+TGG 0.405142 5_1:+3750553 Msa0711860:three_prime_UTR
ACTTATCAGTTCACCGGCAT+TGG 0.405348 5_1:-3750510 None:intergenic
GTTAAGTTAGCAAATATGTT+TGG 0.407527 5_1:+3750829 Msa0711860:three_prime_UTR
GTTGGTAGCGGCCATGGAAA+TGG 0.411203 5_1:-3748428 None:intergenic
AGTCCACACAATAACATAAC+AGG 0.423007 5_1:-3748332 None:intergenic
TGACCAATCGCAAAGACTTT+GGG 0.427955 5_1:-3748555 None:intergenic
GAGTTCTAACACCTGCTTTG+AGG 0.431159 5_1:+3750026 Msa0711860:CDS
GCGATTGGTCACTACGTGTA+AGG 0.435232 5_1:+3748567 Msa0711860:CDS
TCGCGTCTCCAAATTGCGTT+TGG 0.438075 5_1:+3750544 Msa0711860:three_prime_UTR
AAGAGCAGGAGAGGGATAGA+GGG 0.443083 5_1:-3748450 None:intergenic
TAGAGGGTTGGTAGCGGCCA+TGG 0.452401 5_1:-3748434 None:intergenic
CGGTGACGGCGCTGCCGAGA+GGG 0.459160 5_1:+3748644 Msa0711860:CDS
AACTGGGATTTGGTTTCAAT+AGG 0.460026 5_1:+3750311 Msa0711860:CDS
AGCGGCCATGGAAATGGAAA+TGG 0.462764 5_1:-3748422 None:intergenic
CCATTCCATTTCCATTTCCA+TGG 0.463549 5_1:+3748417 Msa0711860:exon
AGCGGTTAGAGTGGCGGGAG+AGG 0.473023 5_1:-3748525 None:intergenic
GGTGGTTGATGAGAGTCAAC+TGG 0.480124 5_1:+3750294 Msa0711860:CDS
AGCACATTTGATCTAAGAAC+AGG 0.481228 5_1:+3749965 Msa0711860:CDS
TCAGAATAAGCACCTTCAGC+AGG 0.482430 5_1:-3748751 None:intergenic
GTGTTTGAGAAGAGCAGGAG+AGG 0.489201 5_1:-3748459 None:intergenic
TCTAAGAACAGGAGAGATCA+AGG 0.490541 5_1:+3749976 Msa0711860:CDS
TGCGTAGCGGTTAGAGTGGC+GGG 0.497650 5_1:-3748530 None:intergenic
GTAAGTAACCTGTGTGAGCT+TGG 0.501102 5_1:-3748788 None:intergenic
CTACTGAAATTCTCTTTAGC+GGG 0.502112 5_1:+3750128 Msa0711860:CDS
GCTGAAGGTGCTTATTCTGA+GGG 0.503715 5_1:+3748754 Msa0711860:CDS
GCAGGAGAGGGATAGAGGGT+TGG 0.508740 5_1:-3748446 None:intergenic
TGCTGAAGGTGCTTATTCTG+AGG 0.509178 5_1:+3748753 Msa0711860:CDS
TGTTTGAGAAGAGCAGGAGA+GGG 0.509351 5_1:-3748458 None:intergenic
CGGCGCTGCCGAGAGGGGAG+AGG 0.510141 5_1:+3748650 Msa0711860:CDS
TATGACTGTTTAGGTCAGAA+TGG 0.512563 5_1:+3750273 Msa0711860:intron
TCAAATGTGCTGTCAGTTGT+TGG 0.515547 5_1:-3749953 None:intergenic
GGTAGCATTCTTTCCAATGC+CGG 0.521169 5_1:+3750497 Msa0711860:three_prime_UTR
AAACTGGGTTCCGGTTGTGC+CGG 0.521653 5_1:+3748624 Msa0711860:CDS
ACATCGCTTGCTGTTATACC+AGG 0.526210 5_1:-3750160 None:intergenic
ACAAAGAGGTTCCTCAAAGC+AGG 0.529140 5_1:-3750037 None:intergenic
GAAAAGGTTTACGTGGGAGA+AGG 0.529528 5_1:-3748498 None:intergenic
ATGCACATATCTTTGGTGAC+AGG 0.530497 5_1:+3750852 Msa0711860:three_prime_UTR
AGGAGAAGAAAAGGTTTACG+TGG 0.531404 5_1:-3748505 None:intergenic
ACGCCCAAAGTCTTTGCGAT+TGG 0.531722 5_1:+3748552 Msa0711860:CDS
AGCATCAGATTTGAAACCTC+CGG 0.532026 5_1:-3750104 None:intergenic
AATATTTATATCAGCATCAC+CGG 0.534811 5_1:+3750085 Msa0711860:CDS
CCTCTCGGCAGCGCCGTCAC+CGG 0.535950 5_1:-3748643 None:intergenic
TTTGCTACTTATCAGTTCAC+CGG 0.540142 5_1:-3750516 None:intergenic
GGTTCCGGTTGTGCCGGTGA+CGG 0.540591 5_1:+3748630 Msa0711860:CDS
CATTGGCCGTGTTTGGATTG+CGG 0.546897 5_1:+3750476 Msa0711860:three_prime_UTR
GCTACTGAAATTCTCTTTAG+CGG 0.547042 5_1:+3750127 Msa0711860:CDS
GAGGGATAGAGGGTTGGTAG+CGG 0.549456 5_1:-3748440 None:intergenic
GTGCGTAGCGGTTAGAGTGG+CGG 0.551558 5_1:-3748531 None:intergenic
CAAATGTGCTGTCAGTTGTT+GGG 0.553575 5_1:-3749952 None:intergenic
TTACGTGGGAGAAGGAAATG+AGG 0.558204 5_1:-3748490 None:intergenic
CCATGGAAATGGAAATGGAA+TGG 0.558450 5_1:-3748417 None:intergenic
GGAGAAGAAAAGGTTTACGT+GGG 0.562615 5_1:-3748504 None:intergenic
TATCCTGTTATGTTATTGTG+TGG 0.565865 5_1:+3748329 Msa0711860:five_prime_UTR
CCGGTGACGGCGCTGCCGAG+AGG 0.566317 5_1:+3748643 Msa0711860:CDS
CAGAATAAGCACCTTCAGCA+GGG 0.566319 5_1:-3748750 None:intergenic
AGGCGTGTCATAATTCAAGA+AGG 0.569370 5_1:+3748670 Msa0711860:CDS
TTTAGCGGGAAGGCTCAGCC+TGG 0.582087 5_1:+3750142 Msa0711860:CDS
TGAAATTCTCTTTAGCGGGA+AGG 0.583788 5_1:+3750132 Msa0711860:CDS
GAAAATAGGTCCCCTGCTGA+AGG 0.583894 5_1:+3748739 Msa0711860:CDS
TAATGCTCTCAATTAGACAT+TGG 0.590136 5_1:+3750459 Msa0711860:exon
ATGGAATGGAGTTTGTGAGA+AGG 0.590618 5_1:-3748403 None:intergenic
GGCGTGTCATAATTCAAGAA+GGG 0.590708 5_1:+3748671 Msa0711860:CDS
GGTGACGGCGCTGCCGAGAG+GGG 0.594296 5_1:+3748645 Msa0711860:CDS
GTTCGAAATCCAACAACAGA+AGG 0.602476 5_1:-3750375 None:intergenic
TACACTACTAGATAGTTACA+AGG 0.603077 5_1:-3750653 None:intergenic
GGCGTGCGTAGCGGTTAGAG+TGG 0.612488 5_1:-3748534 None:intergenic
ATGACACGCCTCTCCCCTCT+CGG 0.613589 5_1:-3748658 None:intergenic
TTTGGACGACTCTTCAGCCA+CGG 0.618145 5_1:-3748602 None:intergenic
GCGTGTCATAATTCAAGAAG+GGG 0.628961 5_1:+3748672 Msa0711860:CDS
AAGACTTTGGGCGTGCGTAG+CGG 0.635063 5_1:-3748543 None:intergenic
TAAGGCAAGTCAAGTGTCCG+TGG 0.635413 5_1:+3748585 Msa0711860:CDS
ATGCTACCGCAATCCAAACA+CGG 0.653617 5_1:-3750482 None:intergenic
AGAATAAGCACCTTCAGCAG+GGG 0.654961 5_1:-3748749 None:intergenic
GAACAGGAGAGATCAAGGAA+TGG 0.658017 5_1:+3749981 Msa0711860:CDS
GACTGTTTAGGTCAGAATGG+TGG 0.660971 5_1:+3750276 Msa0711860:intron
AGGAAGAACGAAATAATCAA+CGG 0.661244 5_1:+3750331 Msa0711860:CDS
ATTTATATCAGCATCACCGG+AGG 0.666199 5_1:+3750088 Msa0711860:CDS
GTGGTTGATGAGAGTCAACT+GGG 0.691875 5_1:+3750295 Msa0711860:CDS
AAGCGATGTCAATGTTGACG+AGG 0.697467 5_1:+3750174 Msa0711860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGCACTTATTAAAATAAT+TGG + chr5_1:3748878-3748897 Msa0711860:intron 15.0%
!!! AGTCATTGAATTTTAAAATA+AGG - chr5_1:3749241-3749260 None:intergenic 15.0%
!!! ATTTTAAAATTCAATGACTA+TGG + chr5_1:3749242-3749261 Msa0711860:intron 15.0%
!!! TCTTTTCATTTACAAATTTT+TGG - chr5_1:3749463-3749482 None:intergenic 15.0%
!!! TTTTTTTTTTATGACTGTTT+AGG + chr5_1:3750264-3750283 Msa0711860:intron 15.0%
!! AAAAATACAAGATTGTATAT+TGG - chr5_1:3750704-3750723 None:intergenic 15.0%
!! AAATGTGAACTATAAAAATT+GGG - chr5_1:3750753-3750772 None:intergenic 15.0%
!! AAAATGTGAACTATAAAAAT+TGG - chr5_1:3750754-3750773 None:intergenic 15.0%
!!! TATAGTTCACATTTTATAAA+TGG + chr5_1:3750759-3750778 Msa0711860:three_prime_UTR 15.0%
!! AAATATTTGCCATTGAAAAT+AGG + chr5_1:3748725-3748744 Msa0711860:CDS 20.0%
!!! TTTCTTAGGATAATGTTTTT+AGG + chr5_1:3748811-3748830 Msa0711860:intron 20.0%
!! AAAAGAAAGAAGCAAAAATT+AGG + chr5_1:3749477-3749496 Msa0711860:intron 20.0%
!! ACATTCTGATCAATTATATA+TGG + chr5_1:3750213-3750232 Msa0711860:intron 20.0%
!!! CCTATAAAAGTTGTTTTGAT+AGG - chr5_1:3748841-3748860 None:intergenic 25.0%
!! CCTATCAAAACAACTTTTAT+AGG + chr5_1:3748838-3748857 Msa0711860:intron 25.0%
!! ACTGAAAATCTGATTTTCAT+TGG + chr5_1:3749316-3749335 Msa0711860:intron 25.0%
!!! GGTCTTTTTTTAAGCAAAAT+CGG + chr5_1:3749357-3749376 Msa0711860:intron 25.0%
! TGTCAACAATCAAAATTACT+AGG + chr5_1:3749401-3749420 Msa0711860:intron 25.0%
! AACAATCAAAATTACTAGGT+TGG + chr5_1:3749405-3749424 Msa0711860:intron 25.0%
! AAATCTGACCTAATTAAATC+AGG + chr5_1:3749522-3749541 Msa0711860:intron 25.0%
! AATCTGACCTAATTAAATCA+GGG + chr5_1:3749523-3749542 Msa0711860:intron 25.0%
! ACTATTTCCCTGATTTAATT+AGG - chr5_1:3749533-3749552 None:intergenic 25.0%
!! TCTTCATCTTTGATTTACTT+TGG - chr5_1:3749560-3749579 None:intergenic 25.0%
!! AATGCATGATAATGTCAATT+GGG + chr5_1:3749775-3749794 Msa0711860:intron 25.0%
!! TCAATCATGATAATGTCAAT+TGG + chr5_1:3749807-3749826 Msa0711860:intron 25.0%
!! CAATCATGATAATGTCAATT+GGG + chr5_1:3749808-3749827 Msa0711860:intron 25.0%
! CATAGAGAAAACAAAACAAT+TGG - chr5_1:3749912-3749931 None:intergenic 25.0%
! AATATTTATATCAGCATCAC+CGG + chr5_1:3750085-3750104 Msa0711860:CDS 25.0%
! GTTAAGTTAGCAAATATGTT+TGG + chr5_1:3750829-3750848 Msa0711860:three_prime_UTR 25.0%
TATCCTGTTATGTTATTGTG+TGG + chr5_1:3748329-3748348 Msa0711860:five_prime_UTR 30.0%
ATTAAGCGCTTATAATTGTG+TGG - chr5_1:3749178-3749197 None:intergenic 30.0%
ATGTTCGTACATATCACAAT+TGG + chr5_1:3749198-3749217 Msa0711860:intron 30.0%
TGTTCGTACATATCACAATT+GGG + chr5_1:3749199-3749218 Msa0711860:intron 30.0%
!!! GGTCAGATTTTTTCAAGAAT+AGG - chr5_1:3749512-3749531 None:intergenic 30.0%
! CATCTTTGATTTACTTTGGT+TGG - chr5_1:3749556-3749575 None:intergenic 30.0%
! CAATGCATGATAATGTCAAT+TGG + chr5_1:3749774-3749793 Msa0711860:intron 30.0%
!!! TTGTTTTGTTTTCTCTATGC+AGG + chr5_1:3749913-3749932 Msa0711860:intron 30.0%
! TTTTGACAGGATATACAAAG+AGG - chr5_1:3750054-3750073 None:intergenic 30.0%
TATATATGGACTCATTGCAA+TGG + chr5_1:3750227-3750246 Msa0711860:intron 30.0%
AGGAAGAACGAAATAATCAA+CGG + chr5_1:3750331-3750350 Msa0711860:CDS 30.0%
! TTGGATTTCGAACTTTTAAC+AGG + chr5_1:3750385-3750404 Msa0711860:CDS 30.0%
! TTTCGAACTTTTAACAGGTA+AGG + chr5_1:3750390-3750409 Msa0711860:CDS 30.0%
! TTCGAACTTTTAACAGGTAA+GGG + chr5_1:3750391-3750410 Msa0711860:CDS 30.0%
TAATGCTCTCAATTAGACAT+TGG + chr5_1:3750459-3750478 Msa0711860:exon 30.0%
TAGTTACAAGGCATACAAAA+AGG - chr5_1:3750644-3750663 None:intergenic 30.0%
TACACTACTAGATAGTTACA+AGG - chr5_1:3750656-3750675 None:intergenic 30.0%
! TACATGATGAGTTTAGTTTC+TGG + chr5_1:3750678-3750697 Msa0711860:three_prime_UTR 30.0%
AGGTTGTAAAATTCATTTCC+AGG + chr5_1:3750872-3750891 Msa0711860:three_prime_UTR 30.0%
AAAAAAAGACGATACTTTCC+TGG - chr5_1:3750893-3750912 None:intergenic 30.0%
AGTCCACACAATAACATAAC+AGG - chr5_1:3748335-3748354 None:intergenic 35.0%
!! TCTTTCTGTTTCTGCATTTG+TGG - chr5_1:3748371-3748390 None:intergenic 35.0%
CACAGGTTACTTACTTTCTT+AGG + chr5_1:3748797-3748816 Msa0711860:intron 35.0%
!! TCCGAATTAGTCTTTCCTTA+GGG + chr5_1:3749036-3749055 Msa0711860:intron 35.0%
ACCCTAAGGAAAGACTAATT+CGG - chr5_1:3749040-3749059 None:intergenic 35.0%
TTTCCTTAGGGTTAAGCTTA+TGG + chr5_1:3749048-3749067 Msa0711860:intron 35.0%
TTCCTTAGGGTTAAGCTTAT+GGG + chr5_1:3749049-3749068 Msa0711860:intron 35.0%
ACTTGTGTGACATTATGTCA+CGG + chr5_1:3749076-3749095 Msa0711860:intron 35.0%
ACAACACATACAACACATCT+GGG + chr5_1:3749152-3749171 Msa0711860:intron 35.0%
ACGTAAACGAAAAAGGTCTT+GGG - chr5_1:3749748-3749767 None:intergenic 35.0%
AACGTAAACGAAAAAGGTCT+TGG - chr5_1:3749749-3749768 None:intergenic 35.0%
!! TTTGTTTTCTCTATGCAGGA+TGG + chr5_1:3749917-3749936 Msa0711860:intron 35.0%
AGCACATTTGATCTAAGAAC+AGG + chr5_1:3749965-3749984 Msa0711860:CDS 35.0%
!!! TTTTGTTCGTCTGTTTTGAC+AGG - chr5_1:3750067-3750086 None:intergenic 35.0%
GCTACTGAAATTCTCTTTAG+CGG + chr5_1:3750127-3750146 Msa0711860:CDS 35.0%
CTACTGAAATTCTCTTTAGC+GGG + chr5_1:3750128-3750147 Msa0711860:CDS 35.0%
TATGACTGTTTAGGTCAGAA+TGG + chr5_1:3750273-3750292 Msa0711860:intron 35.0%
! AACTGGGATTTGGTTTCAAT+AGG + chr5_1:3750311-3750330 Msa0711860:CDS 35.0%
TATTGGATTCCTTCTGTTGT+TGG + chr5_1:3750366-3750385 Msa0711860:CDS 35.0%
! TTTGCTACTTATCAGTTCAC+CGG - chr5_1:3750519-3750538 None:intergenic 35.0%
CAATCGATGCAAGATTTCTT+TGG - chr5_1:3750802-3750821 None:intergenic 35.0%
TGTTTGGATGCACATATCTT+TGG + chr5_1:3750845-3750864 Msa0711860:three_prime_UTR 35.0%
ATGGAATGGAGTTTGTGAGA+AGG - chr5_1:3748406-3748425 None:intergenic 40.0%
CCATGGAAATGGAAATGGAA+TGG - chr5_1:3748420-3748439 None:intergenic 40.0%
CCATTCCATTTCCATTTCCA+TGG + chr5_1:3748417-3748436 Msa0711860:exon 40.0%
GGAGAAGAAAAGGTTTACGT+GGG - chr5_1:3748507-3748526 None:intergenic 40.0%
AGGAGAAGAAAAGGTTTACG+TGG - chr5_1:3748508-3748527 None:intergenic 40.0%
TGACCAATCGCAAAGACTTT+GGG - chr5_1:3748558-3748577 None:intergenic 40.0%
TGAAGAGTCGTCCAAAAACT+GGG + chr5_1:3748609-3748628 Msa0711860:CDS 40.0%
AGGCGTGTCATAATTCAAGA+AGG + chr5_1:3748670-3748689 Msa0711860:CDS 40.0%
GGCGTGTCATAATTCAAGAA+GGG + chr5_1:3748671-3748690 Msa0711860:CDS 40.0%
GCGTGTCATAATTCAAGAAG+GGG + chr5_1:3748672-3748691 Msa0711860:CDS 40.0%
!! GGGAGACTATATTGCTTTTG+TGG + chr5_1:3748692-3748711 Msa0711860:CDS 40.0%
ACTTATATGATTGCCCACGT+GGG + chr5_1:3748916-3748935 Msa0711860:intron 40.0%
CTAAGGAAAGACTAATTCGG+AGG - chr5_1:3749037-3749056 None:intergenic 40.0%
!! CTCCGAATTAGTCTTTCCTT+AGG + chr5_1:3749035-3749054 Msa0711860:intron 40.0%
AACCCATAAGCTTAACCCTA+AGG - chr5_1:3749054-3749073 None:intergenic 40.0%
TTAGGGTTAAGCTTATGGGT+TGG + chr5_1:3749053-3749072 Msa0711860:intron 40.0%
TGTCACGGTGACATTAAATC+TGG + chr5_1:3749091-3749110 Msa0711860:intron 40.0%
GTCACGGTGACATTAAATCT+GGG + chr5_1:3749092-3749111 Msa0711860:intron 40.0%
GATGTGTTGTATGTGTTGTG+TGG - chr5_1:3749151-3749170 None:intergenic 40.0%
CACAACACATACAACACATC+TGG + chr5_1:3749151-3749170 Msa0711860:intron 40.0%
TGGAAAGAAGCGATTGCTAT+AGG + chr5_1:3749336-3749355 Msa0711860:intron 40.0%
! GCTGATAAGCTAGCTTCATA+CGG - chr5_1:3749585-3749604 None:intergenic 40.0%
GAAGACAGAGGTTTAGACTA+CGG - chr5_1:3749676-3749695 None:intergenic 40.0%
AACGAAAAAGGTCTTGGGTT+GGG - chr5_1:3749743-3749762 None:intergenic 40.0%
AAACGAAAAAGGTCTTGGGT+TGG - chr5_1:3749744-3749763 None:intergenic 40.0%
GCACACAACGTAAACGAAAA+AGG - chr5_1:3749755-3749774 None:intergenic 40.0%
CAAATGTGCTGTCAGTTGTT+GGG - chr5_1:3749955-3749974 None:intergenic 40.0%
TCAAATGTGCTGTCAGTTGT+TGG - chr5_1:3749956-3749975 None:intergenic 40.0%
TCTAAGAACAGGAGAGATCA+AGG + chr5_1:3749976-3749995 Msa0711860:CDS 40.0%
ACTCTCAGAACAGCATTGTT+TGG - chr5_1:3750010-3750029 None:intergenic 40.0%
ATTTATATCAGCATCACCGG+AGG + chr5_1:3750088-3750107 Msa0711860:CDS 40.0%
! AGCATCAGATTTGAAACCTC+CGG - chr5_1:3750107-3750126 None:intergenic 40.0%
TGAAATTCTCTTTAGCGGGA+AGG + chr5_1:3750132-3750151 Msa0711860:CDS 40.0%
AACGGTAAAGCAGCTGTTAT+TGG + chr5_1:3750349-3750368 Msa0711860:CDS 40.0%
GTTCGAAATCCAACAACAGA+AGG - chr5_1:3750378-3750397 None:intergenic 40.0%
! AACAGGTAAGGGTCTTTTGA+AGG + chr5_1:3750402-3750421 Msa0711860:CDS 40.0%
! ACAGGTAAGGGTCTTTTGAA+GGG + chr5_1:3750403-3750422 Msa0711860:CDS 40.0%
AATTAGACATTGGCCGTGTT+TGG + chr5_1:3750469-3750488 Msa0711860:exon 40.0%
CAATGCTTCCAAACGCAATT+TGG - chr5_1:3750555-3750574 None:intergenic 40.0%
! CAAATTGCGTTTGGAAGCAT+TGG + chr5_1:3750553-3750572 Msa0711860:three_prime_UTR 40.0%
! ATGCACATATCTTTGGTGAC+AGG + chr5_1:3750852-3750871 Msa0711860:three_prime_UTR 40.0%
TGTTTGAGAAGAGCAGGAGA+GGG - chr5_1:3748461-3748480 None:intergenic 45.0%
AGTGTGTGTTTGAGAAGAGC+AGG - chr5_1:3748467-3748486 None:intergenic 45.0%
TTACGTGGGAGAAGGAAATG+AGG - chr5_1:3748493-3748512 None:intergenic 45.0%
GAAAAGGTTTACGTGGGAGA+AGG - chr5_1:3748501-3748520 None:intergenic 45.0%
GTGACCAATCGCAAAGACTT+TGG - chr5_1:3748559-3748578 None:intergenic 45.0%
CTGAAGAGTCGTCCAAAAAC+TGG + chr5_1:3748608-3748627 Msa0711860:CDS 45.0%
! AGCAGGGGACCTATTTTCAA+TGG - chr5_1:3748737-3748756 None:intergenic 45.0%
AGAATAAGCACCTTCAGCAG+GGG - chr5_1:3748752-3748771 None:intergenic 45.0%
CAGAATAAGCACCTTCAGCA+GGG - chr5_1:3748753-3748772 None:intergenic 45.0%
TCAGAATAAGCACCTTCAGC+AGG - chr5_1:3748754-3748773 None:intergenic 45.0%
!! TGCTGAAGGTGCTTATTCTG+AGG + chr5_1:3748753-3748772 Msa0711860:CDS 45.0%
!! GCTGAAGGTGCTTATTCTGA+GGG + chr5_1:3748754-3748773 Msa0711860:CDS 45.0%
GAAAAATGCCAAGCTCACAC+AGG + chr5_1:3748780-3748799 Msa0711860:CDS 45.0%
GTAAGTAACCTGTGTGAGCT+TGG - chr5_1:3748791-3748810 None:intergenic 45.0%
CACTTATATGATTGCCCACG+TGG + chr5_1:3748915-3748934 Msa0711860:intron 45.0%
GATGAGTCTGAGAACTTGAG+AGG - chr5_1:3748973-3748992 None:intergenic 45.0%
TCAAGTTCTCAGACTCATCC+TGG + chr5_1:3748974-3748993 Msa0711860:intron 45.0%
ACACATTGCCACACAACATC+TGG + chr5_1:3749124-3749143 Msa0711860:intron 45.0%
CACATTGCCACACAACATCT+GGG + chr5_1:3749125-3749144 Msa0711860:intron 45.0%
AGAGGTTTAGACTACGGTGA+AGG - chr5_1:3749670-3749689 None:intergenic 45.0%
GTTAGAGGACTTGAAGACAG+AGG - chr5_1:3749688-3749707 None:intergenic 45.0%
!! AGCTCAGCTGATTTGAGCTA+GGG - chr5_1:3749719-3749738 None:intergenic 45.0%
!! TAGCTCAGCTGATTTGAGCT+AGG - chr5_1:3749720-3749739 None:intergenic 45.0%
GAACAGGAGAGATCAAGGAA+TGG + chr5_1:3749981-3750000 Msa0711860:CDS 45.0%
! GAGTTCTAACACCTGCTTTG+AGG + chr5_1:3750026-3750045 Msa0711860:CDS 45.0%
ACAAAGAGGTTCCTCAAAGC+AGG - chr5_1:3750040-3750059 None:intergenic 45.0%
!! ACATCGCTTGCTGTTATACC+AGG - chr5_1:3750163-3750182 None:intergenic 45.0%
AAGCGATGTCAATGTTGACG+AGG + chr5_1:3750174-3750193 Msa0711860:CDS 45.0%
GACTGTTTAGGTCAGAATGG+TGG + chr5_1:3750276-3750295 Msa0711860:intron 45.0%
!! GTGGTTGATGAGAGTCAACT+GGG + chr5_1:3750295-3750314 Msa0711860:CDS 45.0%
GATGAGAGTCAACTGGGATT+TGG + chr5_1:3750301-3750320 Msa0711860:CDS 45.0%
!! CAGGTAAGGGTCTTTTGAAG+GGG + chr5_1:3750404-3750423 Msa0711860:CDS 45.0%
TTTGAAGGGGACAGGTTTCT+TGG + chr5_1:3750417-3750436 Msa0711860:CDS 45.0%
ATGCTACCGCAATCCAAACA+CGG - chr5_1:3750485-3750504 None:intergenic 45.0%
GGTAGCATTCTTTCCAATGC+CGG + chr5_1:3750497-3750516 Msa0711860:three_prime_UTR 45.0%
ACTTATCAGTTCACCGGCAT+TGG - chr5_1:3750513-3750532 None:intergenic 45.0%
AGCGGCCATGGAAATGGAAA+TGG - chr5_1:3748425-3748444 None:intergenic 50.0%
AAGAGCAGGAGAGGGATAGA+GGG - chr5_1:3748453-3748472 None:intergenic 50.0%
GTGTTTGAGAAGAGCAGGAG+AGG - chr5_1:3748462-3748481 None:intergenic 50.0%
ACGCCCAAAGTCTTTGCGAT+TGG + chr5_1:3748552-3748571 Msa0711860:CDS 50.0%
! GCGATTGGTCACTACGTGTA+AGG + chr5_1:3748567-3748586 Msa0711860:CDS 50.0%
TAAGGCAAGTCAAGTGTCCG+TGG + chr5_1:3748585-3748604 Msa0711860:CDS 50.0%
TTTGGACGACTCTTCAGCCA+CGG - chr5_1:3748605-3748624 None:intergenic 50.0%
GTCGTCCAAAAACTGGGTTC+CGG + chr5_1:3748615-3748634 Msa0711860:CDS 50.0%
! CACAACCGGAACCCAGTTTT+TGG - chr5_1:3748623-3748642 None:intergenic 50.0%
GAAAATAGGTCCCCTGCTGA+AGG + chr5_1:3748739-3748758 Msa0711860:CDS 50.0%
ATATGATTGCCCACGTGGGT+TGG + chr5_1:3748920-3748939 Msa0711860:intron 50.0%
!! ATCCTGGTGCCGGTTTATGT+GGG + chr5_1:3748990-3749009 Msa0711860:intron 50.0%
GTGTGGCAATGTGTGTTGTG+TGG - chr5_1:3749118-3749137 None:intergenic 50.0%
! CTGATTTGAGCTAGGGTCGA+AGG - chr5_1:3749712-3749731 None:intergenic 50.0%
!! GGTGGTTGATGAGAGTCAAC+TGG + chr5_1:3750294-3750313 Msa0711860:CDS 50.0%
!! AAGGGTCTTTTGAAGGGGAC+AGG + chr5_1:3750409-3750428 Msa0711860:CDS 50.0%
CATTGGCCGTGTTTGGATTG+CGG + chr5_1:3750476-3750495 Msa0711860:three_prime_UTR 50.0%
TCGCGTCTCCAAATTGCGTT+TGG + chr5_1:3750544-3750563 Msa0711860:three_prime_UTR 50.0%
!! GTTGGTAGCGGCCATGGAAA+TGG - chr5_1:3748431-3748450 None:intergenic 55.0%
!! GAGGGATAGAGGGTTGGTAG+CGG - chr5_1:3748443-3748462 None:intergenic 55.0%
GAAGAGCAGGAGAGGGATAG+AGG - chr5_1:3748454-3748473 None:intergenic 55.0%
TGGCGGGAGAGGAGAAGAAA+AGG - chr5_1:3748517-3748536 None:intergenic 55.0%
AAGACTTTGGGCGTGCGTAG+CGG - chr5_1:3748546-3748565 None:intergenic 55.0%
AAACTGGGTTCCGGTTGTGC+CGG + chr5_1:3748624-3748643 Msa0711860:CDS 55.0%
TCTCAGACTCATCCTGGTGC+CGG + chr5_1:3748980-3748999 Msa0711860:intron 55.0%
!! CATCCTGGTGCCGGTTTATG+TGG + chr5_1:3748989-3749008 Msa0711860:intron 55.0%
TGTGTGGCCCAGATGTTGTG+TGG - chr5_1:3749135-3749154 None:intergenic 55.0%
GCTAGGGTCGAAGGAGTTAG+AGG - chr5_1:3749703-3749722 None:intergenic 55.0%
!! TAGAGGGTTGGTAGCGGCCA+TGG - chr5_1:3748437-3748456 None:intergenic 60.0%
GCAGGAGAGGGATAGAGGGT+TGG - chr5_1:3748449-3748468 None:intergenic 60.0%
TGCGTAGCGGTTAGAGTGGC+GGG - chr5_1:3748533-3748552 None:intergenic 60.0%
GTGCGTAGCGGTTAGAGTGG+CGG - chr5_1:3748534-3748553 None:intergenic 60.0%
ATGACACGCCTCTCCCCTCT+CGG - chr5_1:3748661-3748680 None:intergenic 60.0%
!! ATTGCCCACGTGGGTTGGTC+TGG + chr5_1:3748925-3748944 Msa0711860:intron 60.0%
ACCACCAGACCAACCCACGT+GGG - chr5_1:3748932-3748951 None:intergenic 60.0%
!! TGGTGCCGGTTTATGTGGGC+CGG + chr5_1:3748994-3749013 Msa0711860:intron 60.0%
GTCCACCGGCCCACATAAAC+CGG - chr5_1:3749002-3749021 None:intergenic 60.0%
GGTTTATGTGGGCCGGTGGA+CGG + chr5_1:3749001-3749020 Msa0711860:intron 60.0%
GGACCAATCCAACCGTCCAC+CGG - chr5_1:3749016-3749035 None:intergenic 60.0%
TTTAGCGGGAAGGCTCAGCC+TGG + chr5_1:3750142-3750161 Msa0711860:CDS 60.0%
! AGCGGTTAGAGTGGCGGGAG+AGG - chr5_1:3748528-3748547 None:intergenic 65.0%
GGCGTGCGTAGCGGTTAGAG+TGG - chr5_1:3748537-3748556 None:intergenic 65.0%
! GGTTCCGGTTGTGCCGGTGA+CGG + chr5_1:3748630-3748649 Msa0711860:CDS 65.0%
CACCACCAGACCAACCCACG+TGG - chr5_1:3748933-3748952 None:intergenic 65.0%
GGCCCACATAAACCGGCACC+AGG - chr5_1:3748995-3749014 None:intergenic 65.0%
!! TGCCGGTTTATGTGGGCCGG+TGG + chr5_1:3748997-3749016 Msa0711860:intron 65.0%
TATGTGGGCCGGTGGACGGT+TGG + chr5_1:3749005-3749024 Msa0711860:intron 65.0%
AGCGCCGTCACCGGCACAAC+CGG - chr5_1:3748637-3748656 None:intergenic 70.0%
!! GCCCACGTGGGTTGGTCTGG+TGG + chr5_1:3748928-3748947 Msa0711860:intron 70.0%
GGGCCGGTGGACGGTTGGAT+TGG + chr5_1:3749010-3749029 Msa0711860:intron 70.0%
CCTCTCGGCAGCGCCGTCAC+CGG - chr5_1:3748646-3748665 None:intergenic 75.0%
! CGGTGACGGCGCTGCCGAGA+GGG + chr5_1:3748644-3748663 Msa0711860:CDS 75.0%
! GGTGACGGCGCTGCCGAGAG+GGG + chr5_1:3748645-3748664 Msa0711860:CDS 75.0%
!! CCGGTGACGGCGCTGCCGAG+AGG + chr5_1:3748643-3748662 Msa0711860:CDS 80.0%
! CGGCGCTGCCGAGAGGGGAG+AGG + chr5_1:3748650-3748669 Msa0711860:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3748314 3750977 3748314 ID=Msa0711860;Name=Msa0711860
chr5_1 mRNA 3748314 3750977 3748314 ID=Msa0711860-mRNA-1;Parent=Msa0711860;Name=Msa0711860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=122|1|1|1|1|1|3|503|271
chr5_1 exon 3748314 3748801 3748314 ID=Msa0711860-mRNA-1:exon:1369;Parent=Msa0711860-mRNA-1
chr5_1 exon 3749935 3750195 3749935 ID=Msa0711860-mRNA-1:exon:1370;Parent=Msa0711860-mRNA-1
chr5_1 exon 3750286 3750977 3750286 ID=Msa0711860-mRNA-1:exon:1371;Parent=Msa0711860-mRNA-1
chr5_1 five_prime_UTR 3748314 3748435 3748314 ID=Msa0711860-mRNA-1:five_prime_utr;Parent=Msa0711860-mRNA-1
chr5_1 CDS 3748436 3748801 3748436 ID=Msa0711860-mRNA-1:cds;Parent=Msa0711860-mRNA-1
chr5_1 CDS 3749935 3750195 3749935 ID=Msa0711860-mRNA-1:cds;Parent=Msa0711860-mRNA-1
chr5_1 CDS 3750286 3750474 3750286 ID=Msa0711860-mRNA-1:cds;Parent=Msa0711860-mRNA-1
chr5_1 three_prime_UTR 3750475 3750977 3750475 ID=Msa0711860-mRNA-1:three_prime_utr;Parent=Msa0711860-mRNA-1
Gene Sequence

>Msa0711860

ATGGCCGCTACCAACCCTCTATCCCTCTCCTGCTCTTCTCAAACACACACTTCTCCTCATTTCCTTCTCCCACGTAAACCTTTTCTTCTCCTCTCCCGCCACTCTAACCGCTACGCACGCCCAAAGTCTTTGCGATTGGTCACTACGTGTAAGGCAAGTCAAGTGTCCGTGGCTGAAGAGTCGTCCAAAAACTGGGTTCCGGTTGTGCCGGTGACGGCGCTGCCGAGAGGGGAGAGGCGTGTCATAATTCAAGAAGGGGAGACTATATTGCTTTTGTGGTATAAAGATCAAATATTTGCCATTGAAAATAGGTCCCCTGCTGAAGGTGCTTATTCTGAGGGCTTGAAAAATGCCAAGCTCACACAGGATGGTTGTATAGTTTGCCCAACAACTGACAGCACATTTGATCTAAGAACAGGAGAGATCAAGGAATGGTATCCAAACAATGCTGTTCTGAGAGTTCTAACACCTGCTTTGAGGAACCTCTTTGTATATCCTGTCAAAACAGACGAACAAAATATTTATATCAGCATCACCGGAGGTTTCAAATCTGATGCTGCTACTGAAATTCTCTTTAGCGGGAAGGCTCAGCCTGGTATAACAGCAAGCGATGTCAATGTTGACGAGGTCAGAATGGTGGTTGATGAGAGTCAACTGGGATTTGGTTTCAATAGGAAGAACGAAATAATCAACGGTAAAGCAGCTGTTATTGGATTCCTTCTGTTGTTGGATTTCGAACTTTTAACAGGTAAGGGTCTTTTGAAGGGGACAGGTTTCTTGGACTTCATATACTCTGCGTCTAATGCTCTCAATTAG

Protein sequence

>Msa0711860

MAATNPLSLSCSSQTHTSPHFLLPRKPFLLLSRHSNRYARPKSLRLVTTCKASQVSVAEESSKNWVPVVPVTALPRGERRVIIQEGETILLLWYKDQIFAIENRSPAEGAYSEGLKNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNAVLRVLTPALRNLFVYPVKTDEQNIYISITGGFKSDAATEILFSGKAQPGITASDVNVDEVRMVVDESQLGFGFNRKNEIINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASNALN*