Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669700 | XP_013454931.1 | 98.636 | 220 | 3 | 0 | 1 | 220 | 1 | 220 | 3.49e-155 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669700 | sp|P32110|GSTX6_SOYBN | 66.964 | 224 | 68 | 2 | 3 | 220 | 2 | 225 | 3.63e-103 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669700 | A0A072UGV0 | 98.636 | 220 | 3 | 0 | 1 | 220 | 1 | 220 | 1.67e-155 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0669700 | 0.820195 | 7.797471e-53 | -8.615850e-47 |
| Msa0004480 | Msa0669700 | 0.823968 | 1.041010e-53 | -8.615850e-47 |
| Msa0090380 | Msa0669700 | 0.831034 | 2.097849e-55 | -8.615850e-47 |
| Msa0631320 | Msa0669700 | 0.859306 | 4.531653e-63 | -8.615850e-47 |
| Msa0669700 | Msa0669740 | 0.972618 | 4.629896e-135 | -8.615850e-47 |
| Msa0669700 | Msa0713060 | 0.810388 | 1.181665e-50 | -8.615850e-47 |
| Msa0669700 | Msa0769720 | 0.824145 | 9.460627e-54 | -8.615850e-47 |
| Msa0669700 | Msa0827240 | 0.820141 | 8.022269e-53 | -8.615850e-47 |
| Msa0669700 | Msa0930740 | 0.819227 | 1.297221e-52 | -8.615850e-47 |
| Msa0669700 | Msa0945130 | 0.836479 | 9.137652e-57 | -8.615850e-47 |
| Msa0669700 | Msa1181060 | 0.821120 | 4.780321e-53 | -8.615850e-47 |
| Msa0669700 | Msa1218160 | 0.822872 | 1.877893e-53 | -8.615850e-47 |
| Msa0669700 | Msa1225580 | 0.815915 | 7.237655e-52 | -8.615850e-47 |
| Msa0669700 | Msa1252810 | 0.815002 | 1.155590e-51 | -8.615850e-47 |
| Msa0669700 | Msa1277780 | 0.805046 | 1.612766e-49 | -8.615850e-47 |
| Msa0669700 | Msa1285200 | 0.807278 | 5.465820e-50 | -8.615850e-47 |
| Msa0669700 | Msa1309760 | 0.803234 | 3.842485e-49 | -8.615850e-47 |
| Msa0669700 | Msa1334840 | 0.820321 | 7.296676e-53 | -8.615850e-47 |
| Msa0669700 | Msa1355510 | 0.807271 | 5.484609e-50 | -8.615850e-47 |
| Msa0669700 | Msa1433410 | 0.824307 | 8.665415e-54 | -8.615850e-47 |
| Msa0669700 | Msa1443620 | 0.814355 | 1.607305e-51 | -8.615850e-47 |
| Msa0669700 | Msa1443640 | 0.826156 | 3.166544e-54 | -8.615850e-47 |
| Msa0137860 | Msa0669700 | 0.817073 | 3.984601e-52 | -8.615850e-47 |
| Msa0138900 | Msa0669700 | 0.802740 | 4.861707e-49 | -8.615850e-47 |
| Msa0151220 | Msa0669700 | 0.805635 | 1.213882e-49 | -8.615850e-47 |
| Msa0187310 | Msa0669700 | 0.813550 | 2.418915e-51 | -8.615850e-47 |
| Msa0196880 | Msa0669700 | 0.807004 | 6.246559e-50 | -8.615850e-47 |
| Msa0364790 | Msa0669700 | 0.802440 | 5.604650e-49 | -8.615850e-47 |
| Msa0365950 | Msa0669700 | 0.800413 | 1.458362e-48 | -8.615850e-47 |
| Msa0380600 | Msa0669700 | 0.804607 | 1.991399e-49 | -8.615850e-47 |
| Msa0413870 | Msa0669700 | 0.824330 | 8.556520e-54 | -8.615850e-47 |
| Msa0430240 | Msa0669700 | 0.807293 | 5.425140e-50 | -8.615850e-47 |
| Msa0264680 | Msa0669700 | 0.805965 | 1.034388e-49 | -8.615850e-47 |
| Msa0276430 | Msa0669700 | 0.826428 | 2.727209e-54 | -8.615850e-47 |
| Msa0302730 | Msa0669700 | 0.818506 | 1.891985e-52 | -8.615850e-47 |
| Msa0316470 | Msa0669700 | 0.842833 | 2.030840e-58 | -8.615850e-47 |
| Msa0319240 | Msa0669700 | 0.808331 | 3.264196e-50 | -8.615850e-47 |
| Msa0484800 | Msa0669700 | 0.802045 | 6.759413e-49 | -8.615850e-47 |
| Msa0534870 | Msa0669700 | 0.834053 | 3.744393e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669700 | MtrunA17_Chr4g0008781 | 98.636 | 220 | 3 | 0 | 1 | 220 | 1 | 220 | 3.21e-159 | 439 |
| Msa0669700 | MtrunA17_Chr7g0240681 | 63.761 | 218 | 75 | 3 | 1 | 216 | 1 | 216 | 5.66e-98 | 284 |
| Msa0669700 | MtrunA17_Chr7g0240641 | 62.212 | 217 | 79 | 3 | 1 | 216 | 1 | 215 | 7.21e-96 | 279 |
| Msa0669700 | MtrunA17_Chr7g0240561 | 61.502 | 213 | 80 | 2 | 5 | 216 | 4 | 215 | 1.96e-94 | 275 |
| Msa0669700 | MtrunA17_Chr4g0008791 | 60.094 | 213 | 83 | 2 | 5 | 216 | 4 | 215 | 7.96e-94 | 273 |
| Msa0669700 | MtrunA17_Chr7g0240631 | 60.829 | 217 | 82 | 3 | 1 | 216 | 1 | 215 | 1.57e-93 | 273 |
| Msa0669700 | MtrunA17_Chr7g0240551 | 60.465 | 215 | 83 | 2 | 3 | 216 | 2 | 215 | 4.02e-93 | 272 |
| Msa0669700 | MtrunA17_Chr7g0240581 | 60.748 | 214 | 82 | 2 | 4 | 216 | 3 | 215 | 1.05e-92 | 271 |
| Msa0669700 | MtrunA17_Chr7g0240611 | 60.829 | 217 | 79 | 3 | 3 | 218 | 2 | 213 | 1.33e-91 | 268 |
| Msa0669700 | MtrunA17_Chr7g0240691 | 59.906 | 212 | 82 | 2 | 7 | 216 | 36 | 246 | 8.58e-91 | 267 |
| Msa0669700 | MtrunA17_Chr7g0240541 | 57.674 | 215 | 89 | 2 | 3 | 216 | 2 | 215 | 1.17e-88 | 260 |
| Msa0669700 | MtrunA17_Chr7g0240531 | 58.605 | 215 | 87 | 2 | 3 | 216 | 2 | 215 | 3.45e-88 | 259 |
| Msa0669700 | MtrunA17_Chr7g0240511 | 59.070 | 215 | 81 | 3 | 3 | 216 | 2 | 210 | 1.60e-86 | 255 |
| Msa0669700 | MtrunA17_Chr7g0240521 | 57.798 | 218 | 90 | 2 | 4 | 220 | 10 | 226 | 1.11e-81 | 243 |
| Msa0669700 | MtrunA17_Chr7g0240671 | 54.808 | 208 | 88 | 3 | 9 | 215 | 5 | 207 | 1.22e-77 | 233 |
| Msa0669700 | MtrunA17_Chr7g0240651 | 56.881 | 218 | 88 | 3 | 3 | 219 | 2 | 214 | 1.71e-75 | 227 |
| Msa0669700 | MtrunA17_Chr7g0240661 | 57.009 | 214 | 86 | 3 | 3 | 215 | 2 | 210 | 1.20e-74 | 225 |
| Msa0669700 | MtrunA17_Chr6g0483141 | 50.242 | 207 | 103 | 0 | 8 | 214 | 3 | 209 | 1.99e-72 | 219 |
| Msa0669700 | MtrunA17_Chr1g0196771 | 47.170 | 212 | 109 | 2 | 6 | 215 | 1 | 211 | 5.16e-69 | 211 |
| Msa0669700 | MtrunA17_Chr8g0379581 | 49.528 | 212 | 107 | 0 | 5 | 216 | 2 | 213 | 1.21e-66 | 204 |
| Msa0669700 | MtrunA17_Chr3g0132581 | 49.289 | 211 | 107 | 0 | 6 | 216 | 3 | 213 | 1.99e-66 | 204 |
| Msa0669700 | MtrunA17_Chr5g0417011 | 48.837 | 215 | 104 | 2 | 8 | 216 | 7 | 221 | 9.51e-66 | 202 |
| Msa0669700 | MtrunA17_Chr8g0379561 | 48.325 | 209 | 108 | 0 | 5 | 213 | 3 | 211 | 1.91e-63 | 196 |
| Msa0669700 | MtrunA17_Chr1g0212301 | 47.343 | 207 | 106 | 2 | 8 | 211 | 3 | 209 | 9.40e-61 | 189 |
| Msa0669700 | MtrunA17_Chr4g0029341 | 45.622 | 217 | 114 | 3 | 7 | 220 | 3 | 218 | 9.39e-60 | 187 |
| Msa0669700 | MtrunA17_Chr1g0196661 | 44.550 | 211 | 111 | 3 | 8 | 214 | 3 | 211 | 1.81e-56 | 179 |
| Msa0669700 | MtrunA17_Chr1g0196691 | 43.868 | 212 | 114 | 3 | 8 | 215 | 28 | 238 | 2.83e-56 | 179 |
| Msa0669700 | MtrunA17_Chr1g0196721 | 45.370 | 216 | 112 | 3 | 9 | 220 | 3 | 216 | 7.99e-55 | 174 |
| Msa0669700 | MtrunA17_Chr1g0196711 | 43.810 | 210 | 112 | 3 | 8 | 213 | 3 | 210 | 4.26e-54 | 172 |
| Msa0669700 | MtrunA17_Chr2g0312731 | 40.976 | 205 | 118 | 2 | 7 | 210 | 3 | 205 | 3.90e-49 | 160 |
| Msa0669700 | MtrunA17_Chr5g0415411 | 40.529 | 227 | 124 | 4 | 1 | 219 | 1 | 224 | 5.77e-49 | 159 |
| Msa0669700 | MtrunA17_Chr2g0312771 | 41.148 | 209 | 118 | 3 | 7 | 213 | 3 | 208 | 1.23e-48 | 158 |
| Msa0669700 | MtrunA17_Chr2g0312751 | 40.476 | 210 | 120 | 3 | 7 | 214 | 3 | 209 | 8.28e-48 | 156 |
| Msa0669700 | MtrunA17_Chr8g0363751 | 39.545 | 220 | 123 | 5 | 6 | 216 | 3 | 221 | 5.21e-46 | 152 |
| Msa0669700 | MtrunA17_Chr2g0312721 | 38.389 | 211 | 123 | 4 | 7 | 214 | 3 | 209 | 9.68e-46 | 151 |
| Msa0669700 | MtrunA17_Chr2g0312781 | 38.679 | 212 | 125 | 4 | 1 | 210 | 14 | 222 | 1.19e-45 | 151 |
| Msa0669700 | MtrunA17_Chr2g0312791 | 40.826 | 218 | 122 | 6 | 7 | 220 | 3 | 217 | 3.75e-44 | 147 |
| Msa0669700 | MtrunA17_Chr3g0107741 | 40.465 | 215 | 115 | 7 | 5 | 213 | 6 | 213 | 8.32e-44 | 146 |
| Msa0669700 | MtrunA17_Chr8g0357211 | 38.278 | 209 | 124 | 4 | 7 | 213 | 3 | 208 | 9.07e-44 | 146 |
| Msa0669700 | MtrunA17_Chr8g0357241 | 38.278 | 209 | 124 | 4 | 7 | 213 | 3 | 208 | 1.16e-43 | 145 |
| Msa0669700 | MtrunA17_Chr2g0312691 | 37.981 | 208 | 124 | 4 | 8 | 213 | 4 | 208 | 1.54e-43 | 145 |
| Msa0669700 | MtrunA17_Chr3g0107731 | 38.942 | 208 | 120 | 5 | 9 | 213 | 10 | 213 | 3.28e-43 | 145 |
| Msa0669700 | MtrunA17_Chr2g0312811 | 38.571 | 210 | 124 | 3 | 7 | 213 | 3 | 210 | 1.19e-42 | 143 |
| Msa0669700 | MtrunA17_Chr2g0312681 | 37.500 | 208 | 125 | 4 | 8 | 213 | 4 | 208 | 5.92e-42 | 141 |
| Msa0669700 | MtrunA17_Chr4g0069471 | 44.886 | 176 | 93 | 4 | 6 | 178 | 23 | 197 | 1.35e-41 | 140 |
| Msa0669700 | MtrunA17_Chr2g0312711 | 37.198 | 207 | 126 | 3 | 8 | 213 | 4 | 207 | 1.94e-40 | 137 |
| Msa0669700 | MtrunA17_Chr5g0433801 | 35.577 | 208 | 131 | 2 | 7 | 213 | 5 | 210 | 2.25e-39 | 135 |
| Msa0669700 | MtrunA17_Chr8g0391631 | 43.871 | 155 | 79 | 4 | 8 | 154 | 21 | 175 | 5.14e-36 | 125 |
| Msa0669700 | MtrunA17_Chr2g0313561 | 47.297 | 74 | 37 | 2 | 52 | 124 | 2 | 74 | 5.37e-18 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669700 | AT3G09270.1 | 57.674 | 215 | 88 | 3 | 5 | 216 | 2 | 216 | 4.11e-89 | 262 |
| Msa0669700 | AT2G29420.1 | 47.926 | 217 | 113 | 0 | 4 | 220 | 5 | 221 | 1.35e-77 | 233 |
| Msa0669700 | AT2G29490.1 | 49.029 | 206 | 104 | 1 | 5 | 209 | 4 | 209 | 3.42e-67 | 206 |
| Msa0669700 | AT2G29450.1 | 49.282 | 209 | 104 | 2 | 3 | 209 | 1 | 209 | 5.68e-66 | 203 |
| Msa0669700 | AT2G29460.1 | 44.240 | 217 | 120 | 1 | 5 | 220 | 4 | 220 | 2.97e-65 | 201 |
| Msa0669700 | AT2G29480.1 | 45.854 | 205 | 110 | 1 | 6 | 209 | 5 | 209 | 5.29e-63 | 196 |
| Msa0669700 | AT2G29440.1 | 44.954 | 218 | 119 | 1 | 4 | 220 | 2 | 219 | 7.12e-63 | 195 |
| Msa0669700 | AT2G29470.1 | 44.660 | 206 | 112 | 2 | 6 | 209 | 5 | 210 | 1.75e-59 | 187 |
| Msa0669700 | AT1G78320.1 | 42.654 | 211 | 110 | 7 | 6 | 211 | 2 | 206 | 9.02e-51 | 164 |
| Msa0669700 | AT5G62480.1 | 39.545 | 220 | 124 | 2 | 6 | 216 | 6 | 225 | 1.22e-49 | 162 |
| Msa0669700 | AT1G74590.1 | 38.739 | 222 | 127 | 4 | 6 | 220 | 5 | 224 | 2.36e-49 | 161 |
| Msa0669700 | AT1G59700.1 | 43.498 | 223 | 112 | 6 | 4 | 215 | 2 | 221 | 4.59e-49 | 160 |
| Msa0669700 | AT1G59670.1 | 40.909 | 220 | 122 | 4 | 4 | 215 | 2 | 221 | 5.47e-49 | 160 |
| Msa0669700 | AT1G27130.1 | 38.636 | 220 | 127 | 4 | 4 | 215 | 2 | 221 | 1.99e-48 | 159 |
| Msa0669700 | AT1G17170.1 | 40.000 | 215 | 125 | 3 | 7 | 220 | 3 | 214 | 6.32e-48 | 157 |
| Msa0669700 | AT1G53680.1 | 41.262 | 206 | 116 | 3 | 9 | 211 | 8 | 211 | 2.64e-47 | 155 |
| Msa0669700 | AT1G78340.1 | 41.509 | 212 | 113 | 6 | 7 | 213 | 3 | 208 | 3.10e-47 | 155 |
| Msa0669700 | AT1G10370.1 | 38.710 | 217 | 126 | 2 | 6 | 215 | 3 | 219 | 6.62e-46 | 152 |
| Msa0669700 | AT1G17180.1 | 41.038 | 212 | 114 | 6 | 7 | 213 | 3 | 208 | 3.51e-45 | 150 |
| Msa0669700 | AT1G78370.1 | 36.765 | 204 | 126 | 2 | 11 | 213 | 7 | 208 | 7.12e-45 | 149 |
| Msa0669700 | AT1G69930.1 | 35.945 | 217 | 133 | 3 | 3 | 213 | 7 | 223 | 2.88e-44 | 148 |
| Msa0669700 | AT1G78380.1 | 37.681 | 207 | 126 | 2 | 8 | 213 | 4 | 208 | 2.60e-42 | 142 |
| Msa0669700 | AT1G10360.1 | 36.889 | 225 | 126 | 7 | 1 | 215 | 1 | 219 | 3.13e-41 | 140 |
| Msa0669700 | AT3G43800.1 | 37.379 | 206 | 122 | 4 | 5 | 205 | 2 | 205 | 6.16e-41 | 139 |
| Msa0669700 | AT1G69920.1 | 35.909 | 220 | 133 | 4 | 4 | 215 | 30 | 249 | 1.01e-40 | 139 |
| Msa0669700 | AT1G17190.1 | 36.967 | 211 | 124 | 6 | 7 | 213 | 4 | 209 | 2.25e-40 | 137 |
| Msa0669700 | AT1G78360.1 | 36.842 | 209 | 126 | 4 | 8 | 213 | 4 | 209 | 3.70e-37 | 129 |
| Msa0669700 | AT1G27140.1 | 34.685 | 222 | 134 | 5 | 4 | 215 | 2 | 222 | 2.57e-36 | 128 |
| Msa0669700 | AT1G78320.2 | 36.190 | 210 | 98 | 7 | 6 | 211 | 2 | 179 | 1.20e-35 | 125 |
| Msa0669700 | AT5G62480.2 | 31.963 | 219 | 116 | 2 | 6 | 216 | 6 | 199 | 3.19e-32 | 116 |
| Msa0669700 | AT5G62480.3 | 31.963 | 219 | 115 | 2 | 6 | 216 | 6 | 198 | 7.23e-32 | 115 |
Find 56 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAATTTCATTGGTTATT+GGG | 0.199095 | 4_4:+11574422 | Msa0669700:CDS |
| CTGCTAATTTCATTGGTTAT+TGG | 0.203566 | 4_4:+11574421 | Msa0669700:CDS |
| TATTATCTTTAGAGCTTCTA+AGG | 0.238996 | 4_4:-11574337 | None:intergenic |
| AAGTGAGGCTATTAGGAAAA+TGG | 0.276631 | 4_4:+11573106 | Msa0669700:CDS |
| CAAGAAGAAGTGAGGCTATT+AGG | 0.278486 | 4_4:+11573099 | Msa0669700:CDS |
| GTGCCTATTCTTGTTCATAA+TGG | 0.303146 | 4_4:+11573255 | Msa0669700:CDS |
| ATAGGCACCTTCTTGTAAAC+AGG | 0.311691 | 4_4:-11573240 | None:intergenic |
| ATAAAGGACAAGAAATTCTT+TGG | 0.317481 | 4_4:+11574369 | Msa0669700:CDS |
| GATATTGCTGCTAATTTCAT+TGG | 0.319391 | 4_4:+11574414 | Msa0669700:CDS |
| AGATCAATTCTGTTGCTAAA+TGG | 0.322966 | 4_4:-11573135 | None:intergenic |
| TTATAAATCATCTCTAATAT+TGG | 0.330465 | 4_4:-11574611 | None:intergenic |
| GGCAACCCTTCCTTGATAAC+AGG | 0.336300 | 4_4:-11574537 | None:intergenic |
| GATAATAGAGGATGAAATAA+AGG | 0.348600 | 4_4:+11574353 | Msa0669700:CDS |
| AATTTCCTAAGGTATATAAA+TGG | 0.365554 | 4_4:+11574493 | Msa0669700:CDS |
| CTGCAATATGGAATGCTTGC+TGG | 0.367214 | 4_4:+11574277 | Msa0669700:CDS |
| CAGCAAGCATTCCATATTGC+AGG | 0.405973 | 4_4:-11574276 | None:intergenic |
| AGAGGACAAGGATTAGTGTT+TGG | 0.408834 | 4_4:-11572967 | None:intergenic |
| TTTCCATTATGAACAAGAAT+AGG | 0.411086 | 4_4:-11573258 | None:intergenic |
| TATATATTACAAGAAATTGC+AGG | 0.419886 | 4_4:+11574447 | Msa0669700:CDS |
| AATGCAAATAGTTCATCTCT+TGG | 0.428630 | 4_4:-11574561 | None:intergenic |
| ATGATAAGAGACTCAGCAAT+TGG | 0.431930 | 4_4:-11573282 | None:intergenic |
| AGTGAGGCTATTAGGAAAAT+GGG | 0.434579 | 4_4:+11573107 | Msa0669700:CDS |
| TGACTCCATTTATATACCTT+AGG | 0.435692 | 4_4:-11574498 | None:intergenic |
| CGAGCCAAGGCTCTTTCATA+AGG | 0.444093 | 4_4:-11573357 | None:intergenic |
| TATCAATCACCCTGTTATCA+AGG | 0.446058 | 4_4:+11574527 | Msa0669700:CDS |
| GTTAATGAAAATAAAACATT+CGG | 0.457193 | 4_4:-11574758 | None:intergenic |
| TTCTTTGGTGGTGAAACCTT+AGG | 0.460299 | 4_4:+11574384 | Msa0669700:CDS |
| AACCTTGTCATCTAGAGTCT+TGG | 0.475798 | 4_4:-11573388 | None:intergenic |
| ATTACAAGAAATTGCAGGGT+TGG | 0.478448 | 4_4:+11574452 | Msa0669700:CDS |
| GATCTTGCTTTAAAACTCAA+AGG | 0.505899 | 4_4:+11573153 | Msa0669700:CDS |
| TACTATTGAGAAATTTCCTA+AGG | 0.513054 | 4_4:+11574482 | Msa0669700:CDS |
| AATCACCCTGTTATCAAGGA+AGG | 0.524655 | 4_4:+11574531 | Msa0669700:CDS |
| AGAAGCTCTAAAGATAATAG+AGG | 0.526886 | 4_4:+11574341 | Msa0669700:CDS |
| TAAGGATCTTGAGACAAAAG+TGG | 0.532667 | 4_4:-11573339 | None:intergenic |
| AGCAATATCTACAAGTCCTA+AGG | 0.546214 | 4_4:-11574400 | None:intergenic |
| GCAAATAGTTCATCTCTTGG+AGG | 0.550428 | 4_4:-11574558 | None:intergenic |
| AAGGACAAGAAATTCTTTGG+TGG | 0.552873 | 4_4:+11574372 | Msa0669700:CDS |
| TCTAGTTCTCACGATAAAAG+AGG | 0.565255 | 4_4:+11574783 | Msa0669700:three_prime_UTR |
| ATACAACCCTGTTTACAAGA+AGG | 0.566628 | 4_4:+11573233 | Msa0669700:CDS |
| ACTAGAACATGGTGGGTTGG+TGG | 0.574978 | 4_4:-11572915 | None:intergenic |
| TTTGCTGTTTATAGAGGACA+AGG | 0.584164 | 4_4:-11572979 | None:intergenic |
| AGATCCTTATGAAAGAGCCT+TGG | 0.584406 | 4_4:+11573353 | Msa0669700:CDS |
| ATATATTACAAGAAATTGCA+GGG | 0.589528 | 4_4:+11574448 | Msa0669700:CDS |
| TGGACTAGAACATGGTGGGT+TGG | 0.606914 | 4_4:-11572918 | None:intergenic |
| AGGACGTGAGAAAGCTGTGG+AGG | 0.607732 | 4_4:+11574311 | Msa0669700:CDS |
| GTCCAAGACTCTAGATGACA+AGG | 0.609663 | 4_4:+11573386 | Msa0669700:CDS |
| ATCACCCTGTTATCAAGGAA+GGG | 0.614487 | 4_4:+11574532 | Msa0669700:CDS |
| GCTTGCTGGAGTGATGAGAA+AGG | 0.621777 | 4_4:+11574291 | Msa0669700:CDS |
| GCAACCCTTCCTTGATAACA+GGG | 0.651245 | 4_4:-11574536 | None:intergenic |
| TTGAATACATAGATGAGACA+TGG | 0.652622 | 4_4:+11573307 | Msa0669700:CDS |
| CTGCAAATCAAGAAGAAGTG+AGG | 0.653676 | 4_4:+11573091 | Msa0669700:CDS |
| TAGGCACCTTCTTGTAAACA+GGG | 0.655258 | 4_4:-11573239 | None:intergenic |
| AACTTTGATGGACTAGAACA+TGG | 0.660136 | 4_4:-11572926 | None:intergenic |
| GAAAGGACGTGAGAAAGCTG+TGG | 0.660199 | 4_4:+11574308 | Msa0669700:CDS |
| TTGATGGACTAGAACATGGT+GGG | 0.675890 | 4_4:-11572922 | None:intergenic |
| TTTGATGGACTAGAACATGG+TGG | 0.700854 | 4_4:-11572923 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTGTTTTTTTATATTAGAAT+TGG | + | chr4_4:11573616-11573635 | Msa0669700:intron | 15.0% |
| !!! | TAATGTAAAATGATTTTGTT+TGG | - | chr4_4:11573724-11573743 | None:intergenic | 15.0% |
| !!! | TAATATTTTCCTTAATAACT+TGG | + | chr4_4:11574011-11574030 | Msa0669700:intron | 15.0% |
| !!! | TTTGTTTTTAGTATACTATT+TGG | - | chr4_4:11574182-11574201 | None:intergenic | 15.0% |
| !!! | TACATAAGATTTTTCATTTT+TGG | + | chr4_4:11574241-11574260 | Msa0669700:intron | 15.0% |
| !! | TTATAAATCATCTCTAATAT+TGG | - | chr4_4:11574614-11574633 | None:intergenic | 15.0% |
| !! | GTTAATGAAAATAAAACATT+CGG | - | chr4_4:11574761-11574780 | None:intergenic | 15.0% |
| !!! | GTGTTTTTTTATATTAGAAT+TGG | + | chr4_4:11573616-11573635 | Msa0669700:intron | 15.0% |
| !!! | TAATGTAAAATGATTTTGTT+TGG | - | chr4_4:11573724-11573743 | None:intergenic | 15.0% |
| !!! | TAATATTTTCCTTAATAACT+TGG | + | chr4_4:11574011-11574030 | Msa0669700:intron | 15.0% |
| !!! | TTTGTTTTTAGTATACTATT+TGG | - | chr4_4:11574182-11574201 | None:intergenic | 15.0% |
| !!! | TACATAAGATTTTTCATTTT+TGG | + | chr4_4:11574241-11574260 | Msa0669700:intron | 15.0% |
| !! | TTATAAATCATCTCTAATAT+TGG | - | chr4_4:11574614-11574633 | None:intergenic | 15.0% |
| !! | GTTAATGAAAATAAAACATT+CGG | - | chr4_4:11574761-11574780 | None:intergenic | 15.0% |
| !! | AAGAAAAATAAGTGTATGTT+TGG | + | chr4_4:11573536-11573555 | Msa0669700:intron | 20.0% |
| !! | AGAAAAATAAGTGTATGTTT+GGG | + | chr4_4:11573537-11573556 | Msa0669700:intron | 20.0% |
| !! | TATATATTACAAGAAATTGC+AGG | + | chr4_4:11574447-11574466 | Msa0669700:CDS | 20.0% |
| !! | ATATATTACAAGAAATTGCA+GGG | + | chr4_4:11574448-11574467 | Msa0669700:CDS | 20.0% |
| !! | AATTTCCTAAGGTATATAAA+TGG | + | chr4_4:11574493-11574512 | Msa0669700:CDS | 20.0% |
| !! | AAGAAAAATAAGTGTATGTT+TGG | + | chr4_4:11573536-11573555 | Msa0669700:intron | 20.0% |
| !! | AGAAAAATAAGTGTATGTTT+GGG | + | chr4_4:11573537-11573556 | Msa0669700:intron | 20.0% |
| !! | TATATATTACAAGAAATTGC+AGG | + | chr4_4:11574447-11574466 | Msa0669700:CDS | 20.0% |
| !! | ATATATTACAAGAAATTGCA+GGG | + | chr4_4:11574448-11574467 | Msa0669700:CDS | 20.0% |
| !! | AATTTCCTAAGGTATATAAA+TGG | + | chr4_4:11574493-11574512 | Msa0669700:CDS | 20.0% |
| !!! | AAAGTTTTTGCTGTTTATAG+AGG | - | chr4_4:11572988-11573007 | None:intergenic | 25.0% |
| ! | TCCTAAAAATCACATTTCTT+AGG | + | chr4_4:11573031-11573050 | Msa0669700:five_prime_UTR | 25.0% |
| !! | ACCTAAGAAATGTGATTTTT+AGG | - | chr4_4:11573035-11573054 | None:intergenic | 25.0% |
| !! | TTTTGAGCTCACAAAAAAAA+TGG | + | chr4_4:11573065-11573084 | Msa0669700:exon | 25.0% |
| !!! | TTTTCTTCAGAGTATTTGTA+TGG | - | chr4_4:11573183-11573202 | None:intergenic | 25.0% |
| ! | TTTCCATTATGAACAAGAAT+AGG | - | chr4_4:11573261-11573280 | None:intergenic | 25.0% |
| !!! | TATTATCTTTAGAGCTTCTA+AGG | - | chr4_4:11574340-11574359 | None:intergenic | 25.0% |
| ! | GATAATAGAGGATGAAATAA+AGG | + | chr4_4:11574353-11574372 | Msa0669700:CDS | 25.0% |
| ! | ATAAAGGACAAGAAATTCTT+TGG | + | chr4_4:11574369-11574388 | Msa0669700:CDS | 25.0% |
| !! | TGCTAATTTCATTGGTTATT+GGG | + | chr4_4:11574422-11574441 | Msa0669700:CDS | 25.0% |
| ! | TACTATTGAGAAATTTCCTA+AGG | + | chr4_4:11574482-11574501 | Msa0669700:CDS | 25.0% |
| !!! | TTACAGCATGATTATTTTGA+AGG | - | chr4_4:11574659-11574678 | None:intergenic | 25.0% |
| ! | GCAAAAAAATAACAAGTTTG+TGG | - | chr4_4:11574711-11574730 | None:intergenic | 25.0% |
| !!! | AAAGTTTTTGCTGTTTATAG+AGG | - | chr4_4:11572988-11573007 | None:intergenic | 25.0% |
| ! | TCCTAAAAATCACATTTCTT+AGG | + | chr4_4:11573031-11573050 | Msa0669700:five_prime_UTR | 25.0% |
| !! | ACCTAAGAAATGTGATTTTT+AGG | - | chr4_4:11573035-11573054 | None:intergenic | 25.0% |
| !! | TTTTGAGCTCACAAAAAAAA+TGG | + | chr4_4:11573065-11573084 | Msa0669700:exon | 25.0% |
| !!! | TTTTCTTCAGAGTATTTGTA+TGG | - | chr4_4:11573183-11573202 | None:intergenic | 25.0% |
| ! | TTTCCATTATGAACAAGAAT+AGG | - | chr4_4:11573261-11573280 | None:intergenic | 25.0% |
| !!! | TATTATCTTTAGAGCTTCTA+AGG | - | chr4_4:11574340-11574359 | None:intergenic | 25.0% |
| ! | GATAATAGAGGATGAAATAA+AGG | + | chr4_4:11574353-11574372 | Msa0669700:CDS | 25.0% |
| ! | ATAAAGGACAAGAAATTCTT+TGG | + | chr4_4:11574369-11574388 | Msa0669700:CDS | 25.0% |
| !! | TGCTAATTTCATTGGTTATT+GGG | + | chr4_4:11574422-11574441 | Msa0669700:CDS | 25.0% |
| ! | TACTATTGAGAAATTTCCTA+AGG | + | chr4_4:11574482-11574501 | Msa0669700:CDS | 25.0% |
| !!! | TTACAGCATGATTATTTTGA+AGG | - | chr4_4:11574659-11574678 | None:intergenic | 25.0% |
| ! | GCAAAAAAATAACAAGTTTG+TGG | - | chr4_4:11574711-11574730 | None:intergenic | 25.0% |
| !!! | ATGTTTTTGGTCAACTTTGA+TGG | - | chr4_4:11572941-11572960 | None:intergenic | 30.0% |
| !!! | TGTTTGGTTTGTGATGTTTT+TGG | - | chr4_4:11572954-11572973 | None:intergenic | 30.0% |
| AGATCAATTCTGTTGCTAAA+TGG | - | chr4_4:11573138-11573157 | None:intergenic | 30.0% | |
| !! | GATCTTGCTTTAAAACTCAA+AGG | + | chr4_4:11573153-11573172 | Msa0669700:CDS | 30.0% |
| TTGAATACATAGATGAGACA+TGG | + | chr4_4:11573307-11573326 | Msa0669700:CDS | 30.0% | |
| CTTCAATGCTATCATAATTG+TGG | - | chr4_4:11573480-11573499 | None:intergenic | 30.0% | |
| ! | TTATGATAGCATTGAAGTAG+TGG | + | chr4_4:11573483-11573502 | Msa0669700:intron | 30.0% |
| !!! | GTTTGGGTTCATTTTAAGAT+AGG | + | chr4_4:11573553-11573572 | Msa0669700:intron | 30.0% |
| AGTGCAAAAGTAAAGTTTGT+AGG | - | chr4_4:11573682-11573701 | None:intergenic | 30.0% | |
| TTGTCCAACAATTCTAAGTT+GGG | - | chr4_4:11573924-11573943 | None:intergenic | 30.0% | |
| ATTGTCCAACAATTCTAAGT+TGG | - | chr4_4:11573925-11573944 | None:intergenic | 30.0% | |
| TAGAATTGTTGGACAATCAT+TGG | + | chr4_4:11573928-11573947 | Msa0669700:intron | 30.0% | |
| TATCAAAGATCGAGATGTAA+GGG | - | chr4_4:11573963-11573982 | None:intergenic | 30.0% | |
| ATATCAAAGATCGAGATGTA+AGG | - | chr4_4:11573964-11573983 | None:intergenic | 30.0% | |
| TTCAATCTCTAGTGTCAATT+TGG | + | chr4_4:11574060-11574079 | Msa0669700:intron | 30.0% | |
| CAACAATGAGATCGTTATTA+AGG | - | chr4_4:11574126-11574145 | None:intergenic | 30.0% | |
| !! | ACTAAAAACAAACTTGCTAG+TGG | + | chr4_4:11574190-11574209 | Msa0669700:intron | 30.0% |
| ! | TTTAGATTTTGCCTGCAATA+TGG | + | chr4_4:11574265-11574284 | Msa0669700:intron | 30.0% |
| !! | AGAAGCTCTAAAGATAATAG+AGG | + | chr4_4:11574341-11574360 | Msa0669700:CDS | 30.0% |
| GATATTGCTGCTAATTTCAT+TGG | + | chr4_4:11574414-11574433 | Msa0669700:CDS | 30.0% | |
| ! | CTGCTAATTTCATTGGTTAT+TGG | + | chr4_4:11574421-11574440 | Msa0669700:CDS | 30.0% |
| TGACTCCATTTATATACCTT+AGG | - | chr4_4:11574501-11574520 | None:intergenic | 30.0% | |
| AATGCAAATAGTTCATCTCT+TGG | - | chr4_4:11574564-11574583 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTGGTCAACTTTGA+TGG | - | chr4_4:11572941-11572960 | None:intergenic | 30.0% |
| !!! | TGTTTGGTTTGTGATGTTTT+TGG | - | chr4_4:11572954-11572973 | None:intergenic | 30.0% |
| AGATCAATTCTGTTGCTAAA+TGG | - | chr4_4:11573138-11573157 | None:intergenic | 30.0% | |
| !! | GATCTTGCTTTAAAACTCAA+AGG | + | chr4_4:11573153-11573172 | Msa0669700:CDS | 30.0% |
| TTGAATACATAGATGAGACA+TGG | + | chr4_4:11573307-11573326 | Msa0669700:CDS | 30.0% | |
| CTTCAATGCTATCATAATTG+TGG | - | chr4_4:11573480-11573499 | None:intergenic | 30.0% | |
| ! | TTATGATAGCATTGAAGTAG+TGG | + | chr4_4:11573483-11573502 | Msa0669700:intron | 30.0% |
| !!! | GTTTGGGTTCATTTTAAGAT+AGG | + | chr4_4:11573553-11573572 | Msa0669700:intron | 30.0% |
| AGTGCAAAAGTAAAGTTTGT+AGG | - | chr4_4:11573682-11573701 | None:intergenic | 30.0% | |
| TTGTCCAACAATTCTAAGTT+GGG | - | chr4_4:11573924-11573943 | None:intergenic | 30.0% | |
| ATTGTCCAACAATTCTAAGT+TGG | - | chr4_4:11573925-11573944 | None:intergenic | 30.0% | |
| TAGAATTGTTGGACAATCAT+TGG | + | chr4_4:11573928-11573947 | Msa0669700:intron | 30.0% | |
| TATCAAAGATCGAGATGTAA+GGG | - | chr4_4:11573963-11573982 | None:intergenic | 30.0% | |
| ATATCAAAGATCGAGATGTA+AGG | - | chr4_4:11573964-11573983 | None:intergenic | 30.0% | |
| TTCAATCTCTAGTGTCAATT+TGG | + | chr4_4:11574060-11574079 | Msa0669700:intron | 30.0% | |
| CAACAATGAGATCGTTATTA+AGG | - | chr4_4:11574126-11574145 | None:intergenic | 30.0% | |
| !! | ACTAAAAACAAACTTGCTAG+TGG | + | chr4_4:11574190-11574209 | Msa0669700:intron | 30.0% |
| ! | TTTAGATTTTGCCTGCAATA+TGG | + | chr4_4:11574265-11574284 | Msa0669700:intron | 30.0% |
| !! | AGAAGCTCTAAAGATAATAG+AGG | + | chr4_4:11574341-11574360 | Msa0669700:CDS | 30.0% |
| GATATTGCTGCTAATTTCAT+TGG | + | chr4_4:11574414-11574433 | Msa0669700:CDS | 30.0% | |
| ! | CTGCTAATTTCATTGGTTAT+TGG | + | chr4_4:11574421-11574440 | Msa0669700:CDS | 30.0% |
| TGACTCCATTTATATACCTT+AGG | - | chr4_4:11574501-11574520 | None:intergenic | 30.0% | |
| AATGCAAATAGTTCATCTCT+TGG | - | chr4_4:11574564-11574583 | None:intergenic | 30.0% | |
| !! | AACTTTGATGGACTAGAACA+TGG | - | chr4_4:11572929-11572948 | None:intergenic | 35.0% |
| !! | TTTGCTGTTTATAGAGGACA+AGG | - | chr4_4:11572982-11573001 | None:intergenic | 35.0% |
| AAGTGAGGCTATTAGGAAAA+TGG | + | chr4_4:11573106-11573125 | Msa0669700:CDS | 35.0% | |
| AGTGAGGCTATTAGGAAAAT+GGG | + | chr4_4:11573107-11573126 | Msa0669700:CDS | 35.0% | |
| ATACAACCCTGTTTACAAGA+AGG | + | chr4_4:11573233-11573252 | Msa0669700:CDS | 35.0% | |
| GTGCCTATTCTTGTTCATAA+TGG | + | chr4_4:11573255-11573274 | Msa0669700:CDS | 35.0% | |
| ATGATAAGAGACTCAGCAAT+TGG | - | chr4_4:11573285-11573304 | None:intergenic | 35.0% | |
| TAAGGATCTTGAGACAAAAG+TGG | - | chr4_4:11573342-11573361 | None:intergenic | 35.0% | |
| !! | CTAATTCCTGAGTGTTGATT+TGG | - | chr4_4:11573847-11573866 | None:intergenic | 35.0% |
| TGTCCAACAATTCTAAGTTG+GGG | - | chr4_4:11573923-11573942 | None:intergenic | 35.0% | |
| GAGTACACTCCAAGTTATTA+AGG | - | chr4_4:11574023-11574042 | None:intergenic | 35.0% | |
| ATCTCTAGTGTCAATTTGGA+TGG | + | chr4_4:11574064-11574083 | Msa0669700:intron | 35.0% | |
| TTAGTATACTATTTGGACCG+CGG | - | chr4_4:11574175-11574194 | None:intergenic | 35.0% | |
| AAGGACAAGAAATTCTTTGG+TGG | + | chr4_4:11574372-11574391 | Msa0669700:CDS | 35.0% | |
| AGCAATATCTACAAGTCCTA+AGG | - | chr4_4:11574403-11574422 | None:intergenic | 35.0% | |
| ATTACAAGAAATTGCAGGGT+TGG | + | chr4_4:11574452-11574471 | Msa0669700:CDS | 35.0% | |
| TATCAATCACCCTGTTATCA+AGG | + | chr4_4:11574527-11574546 | Msa0669700:CDS | 35.0% | |
| ! | CTTTTATCGTGAGAACTAGA+GGG | - | chr4_4:11574783-11574802 | None:intergenic | 35.0% |
| ! | TCTTTTATCGTGAGAACTAG+AGG | - | chr4_4:11574784-11574803 | None:intergenic | 35.0% |
| !! | TCTAGTTCTCACGATAAAAG+AGG | + | chr4_4:11574783-11574802 | Msa0669700:three_prime_UTR | 35.0% |
| !! | AACTTTGATGGACTAGAACA+TGG | - | chr4_4:11572929-11572948 | None:intergenic | 35.0% |
| !! | TTTGCTGTTTATAGAGGACA+AGG | - | chr4_4:11572982-11573001 | None:intergenic | 35.0% |
| AAGTGAGGCTATTAGGAAAA+TGG | + | chr4_4:11573106-11573125 | Msa0669700:CDS | 35.0% | |
| AGTGAGGCTATTAGGAAAAT+GGG | + | chr4_4:11573107-11573126 | Msa0669700:CDS | 35.0% | |
| ATACAACCCTGTTTACAAGA+AGG | + | chr4_4:11573233-11573252 | Msa0669700:CDS | 35.0% | |
| GTGCCTATTCTTGTTCATAA+TGG | + | chr4_4:11573255-11573274 | Msa0669700:CDS | 35.0% | |
| ATGATAAGAGACTCAGCAAT+TGG | - | chr4_4:11573285-11573304 | None:intergenic | 35.0% | |
| TAAGGATCTTGAGACAAAAG+TGG | - | chr4_4:11573342-11573361 | None:intergenic | 35.0% | |
| !! | CTAATTCCTGAGTGTTGATT+TGG | - | chr4_4:11573847-11573866 | None:intergenic | 35.0% |
| TGTCCAACAATTCTAAGTTG+GGG | - | chr4_4:11573923-11573942 | None:intergenic | 35.0% | |
| GAGTACACTCCAAGTTATTA+AGG | - | chr4_4:11574023-11574042 | None:intergenic | 35.0% | |
| ATCTCTAGTGTCAATTTGGA+TGG | + | chr4_4:11574064-11574083 | Msa0669700:intron | 35.0% | |
| TTAGTATACTATTTGGACCG+CGG | - | chr4_4:11574175-11574194 | None:intergenic | 35.0% | |
| AAGGACAAGAAATTCTTTGG+TGG | + | chr4_4:11574372-11574391 | Msa0669700:CDS | 35.0% | |
| AGCAATATCTACAAGTCCTA+AGG | - | chr4_4:11574403-11574422 | None:intergenic | 35.0% | |
| ATTACAAGAAATTGCAGGGT+TGG | + | chr4_4:11574452-11574471 | Msa0669700:CDS | 35.0% | |
| TATCAATCACCCTGTTATCA+AGG | + | chr4_4:11574527-11574546 | Msa0669700:CDS | 35.0% | |
| ! | CTTTTATCGTGAGAACTAGA+GGG | - | chr4_4:11574783-11574802 | None:intergenic | 35.0% |
| ! | TCTTTTATCGTGAGAACTAG+AGG | - | chr4_4:11574784-11574803 | None:intergenic | 35.0% |
| !! | TCTAGTTCTCACGATAAAAG+AGG | + | chr4_4:11574783-11574802 | Msa0669700:three_prime_UTR | 35.0% |
| !! | TTGATGGACTAGAACATGGT+GGG | - | chr4_4:11572925-11572944 | None:intergenic | 40.0% |
| !! | TTTGATGGACTAGAACATGG+TGG | - | chr4_4:11572926-11572945 | None:intergenic | 40.0% |
| ! | AGAGGACAAGGATTAGTGTT+TGG | - | chr4_4:11572970-11572989 | None:intergenic | 40.0% |
| CTGCAAATCAAGAAGAAGTG+AGG | + | chr4_4:11573091-11573110 | Msa0669700:CDS | 40.0% | |
| CAAGAAGAAGTGAGGCTATT+AGG | + | chr4_4:11573099-11573118 | Msa0669700:CDS | 40.0% | |
| TAGGCACCTTCTTGTAAACA+GGG | - | chr4_4:11573242-11573261 | None:intergenic | 40.0% | |
| ATAGGCACCTTCTTGTAAAC+AGG | - | chr4_4:11573243-11573262 | None:intergenic | 40.0% | |
| AGATCCTTATGAAAGAGCCT+TGG | + | chr4_4:11573353-11573372 | Msa0669700:CDS | 40.0% | |
| ! | AACCTTGTCATCTAGAGTCT+TGG | - | chr4_4:11573391-11573410 | None:intergenic | 40.0% |
| TAGTGGTGAGAGAGTTGTTA+AGG | + | chr4_4:11573500-11573519 | Msa0669700:intron | 40.0% | |
| GTAGAACCAAATCAACACTC+AGG | + | chr4_4:11573838-11573857 | Msa0669700:intron | 40.0% | |
| TGATTGCAAGAGCTATGTCA+GGG | - | chr4_4:11573889-11573908 | None:intergenic | 40.0% | |
| TACCCCCAACTTAGAATTGT+TGG | + | chr4_4:11573917-11573936 | Msa0669700:intron | 40.0% | |
| ! | GTCCAACAATTCTAAGTTGG+GGG | - | chr4_4:11573922-11573941 | None:intergenic | 40.0% |
| TGTTGGACAATCATTGGTCA+TGG | + | chr4_4:11573934-11573953 | Msa0669700:intron | 40.0% | |
| AGATTGAACCTAAGACCTTG+AGG | - | chr4_4:11574048-11574067 | None:intergenic | 40.0% | |
| CATCAAAAATCTTGATGCCG+CGG | + | chr4_4:11574155-11574174 | Msa0669700:intron | 40.0% | |
| !! | TTCTTTGGTGGTGAAACCTT+AGG | + | chr4_4:11574384-11574403 | Msa0669700:CDS | 40.0% |
| AATCACCCTGTTATCAAGGA+AGG | + | chr4_4:11574531-11574550 | Msa0669700:CDS | 40.0% | |
| ATCACCCTGTTATCAAGGAA+GGG | + | chr4_4:11574532-11574551 | Msa0669700:CDS | 40.0% | |
| GCAAATAGTTCATCTCTTGG+AGG | - | chr4_4:11574561-11574580 | None:intergenic | 40.0% | |
| !! | TTGATGGACTAGAACATGGT+GGG | - | chr4_4:11572925-11572944 | None:intergenic | 40.0% |
| !! | TTTGATGGACTAGAACATGG+TGG | - | chr4_4:11572926-11572945 | None:intergenic | 40.0% |
| ! | AGAGGACAAGGATTAGTGTT+TGG | - | chr4_4:11572970-11572989 | None:intergenic | 40.0% |
| CTGCAAATCAAGAAGAAGTG+AGG | + | chr4_4:11573091-11573110 | Msa0669700:CDS | 40.0% | |
| CAAGAAGAAGTGAGGCTATT+AGG | + | chr4_4:11573099-11573118 | Msa0669700:CDS | 40.0% | |
| TAGGCACCTTCTTGTAAACA+GGG | - | chr4_4:11573242-11573261 | None:intergenic | 40.0% | |
| ATAGGCACCTTCTTGTAAAC+AGG | - | chr4_4:11573243-11573262 | None:intergenic | 40.0% | |
| AGATCCTTATGAAAGAGCCT+TGG | + | chr4_4:11573353-11573372 | Msa0669700:CDS | 40.0% | |
| ! | AACCTTGTCATCTAGAGTCT+TGG | - | chr4_4:11573391-11573410 | None:intergenic | 40.0% |
| TAGTGGTGAGAGAGTTGTTA+AGG | + | chr4_4:11573500-11573519 | Msa0669700:intron | 40.0% | |
| GTAGAACCAAATCAACACTC+AGG | + | chr4_4:11573838-11573857 | Msa0669700:intron | 40.0% | |
| TGATTGCAAGAGCTATGTCA+GGG | - | chr4_4:11573889-11573908 | None:intergenic | 40.0% | |
| TACCCCCAACTTAGAATTGT+TGG | + | chr4_4:11573917-11573936 | Msa0669700:intron | 40.0% | |
| ! | GTCCAACAATTCTAAGTTGG+GGG | - | chr4_4:11573922-11573941 | None:intergenic | 40.0% |
| TGTTGGACAATCATTGGTCA+TGG | + | chr4_4:11573934-11573953 | Msa0669700:intron | 40.0% | |
| AGATTGAACCTAAGACCTTG+AGG | - | chr4_4:11574048-11574067 | None:intergenic | 40.0% | |
| CATCAAAAATCTTGATGCCG+CGG | + | chr4_4:11574155-11574174 | Msa0669700:intron | 40.0% | |
| !! | TTCTTTGGTGGTGAAACCTT+AGG | + | chr4_4:11574384-11574403 | Msa0669700:CDS | 40.0% |
| AATCACCCTGTTATCAAGGA+AGG | + | chr4_4:11574531-11574550 | Msa0669700:CDS | 40.0% | |
| ATCACCCTGTTATCAAGGAA+GGG | + | chr4_4:11574532-11574551 | Msa0669700:CDS | 40.0% | |
| GCAAATAGTTCATCTCTTGG+AGG | - | chr4_4:11574561-11574580 | None:intergenic | 40.0% | |
| !! | AAAGAGCCTTGGCTCGTTTT+TGG | + | chr4_4:11573364-11573383 | Msa0669700:CDS | 45.0% |
| GTCCAAGACTCTAGATGACA+AGG | + | chr4_4:11573386-11573405 | Msa0669700:CDS | 45.0% | |
| ! | TCAGGAATTAGTCTCACTGC+TGG | + | chr4_4:11573856-11573875 | Msa0669700:intron | 45.0% |
| GTGATTGCAAGAGCTATGTC+AGG | - | chr4_4:11573890-11573909 | None:intergenic | 45.0% | |
| TTGAACCTAAGACCTTGAGG+AGG | - | chr4_4:11574045-11574064 | None:intergenic | 45.0% | |
| CAGCAAGCATTCCATATTGC+AGG | - | chr4_4:11574279-11574298 | None:intergenic | 45.0% | |
| CTGCAATATGGAATGCTTGC+TGG | + | chr4_4:11574277-11574296 | Msa0669700:CDS | 45.0% | |
| ! | GCAACCCTTCCTTGATAACA+GGG | - | chr4_4:11574539-11574558 | None:intergenic | 45.0% |
| !! | AAAGAGCCTTGGCTCGTTTT+TGG | + | chr4_4:11573364-11573383 | Msa0669700:CDS | 45.0% |
| GTCCAAGACTCTAGATGACA+AGG | + | chr4_4:11573386-11573405 | Msa0669700:CDS | 45.0% | |
| ! | TCAGGAATTAGTCTCACTGC+TGG | + | chr4_4:11573856-11573875 | Msa0669700:intron | 45.0% |
| GTGATTGCAAGAGCTATGTC+AGG | - | chr4_4:11573890-11573909 | None:intergenic | 45.0% | |
| TTGAACCTAAGACCTTGAGG+AGG | - | chr4_4:11574045-11574064 | None:intergenic | 45.0% | |
| CAGCAAGCATTCCATATTGC+AGG | - | chr4_4:11574279-11574298 | None:intergenic | 45.0% | |
| CTGCAATATGGAATGCTTGC+TGG | + | chr4_4:11574277-11574296 | Msa0669700:CDS | 45.0% | |
| ! | GCAACCCTTCCTTGATAACA+GGG | - | chr4_4:11574539-11574558 | None:intergenic | 45.0% |
| !! | TGGACTAGAACATGGTGGGT+TGG | - | chr4_4:11572921-11572940 | None:intergenic | 50.0% |
| CGAGCCAAGGCTCTTTCATA+AGG | - | chr4_4:11573360-11573379 | None:intergenic | 50.0% | |
| CTTGGACCAAAAACGAGCCA+AGG | - | chr4_4:11573373-11573392 | None:intergenic | 50.0% | |
| TTGGAGTGTACTCCTCCTCA+AGG | + | chr4_4:11574030-11574049 | Msa0669700:intron | 50.0% | |
| GTACTCCTCCTCAAGGTCTT+AGG | + | chr4_4:11574037-11574056 | Msa0669700:intron | 50.0% | |
| ! | GCTTGCTGGAGTGATGAGAA+AGG | + | chr4_4:11574291-11574310 | Msa0669700:CDS | 50.0% |
| GAAAGGACGTGAGAAAGCTG+TGG | + | chr4_4:11574308-11574327 | Msa0669700:CDS | 50.0% | |
| ! | GGCAACCCTTCCTTGATAAC+AGG | - | chr4_4:11574540-11574559 | None:intergenic | 50.0% |
| !! | TGGACTAGAACATGGTGGGT+TGG | - | chr4_4:11572921-11572940 | None:intergenic | 50.0% |
| CGAGCCAAGGCTCTTTCATA+AGG | - | chr4_4:11573360-11573379 | None:intergenic | 50.0% | |
| CTTGGACCAAAAACGAGCCA+AGG | - | chr4_4:11573373-11573392 | None:intergenic | 50.0% | |
| TTGGAGTGTACTCCTCCTCA+AGG | + | chr4_4:11574030-11574049 | Msa0669700:intron | 50.0% | |
| GTACTCCTCCTCAAGGTCTT+AGG | + | chr4_4:11574037-11574056 | Msa0669700:intron | 50.0% | |
| ! | GCTTGCTGGAGTGATGAGAA+AGG | + | chr4_4:11574291-11574310 | Msa0669700:CDS | 50.0% |
| GAAAGGACGTGAGAAAGCTG+TGG | + | chr4_4:11574308-11574327 | Msa0669700:CDS | 50.0% | |
| ! | GGCAACCCTTCCTTGATAAC+AGG | - | chr4_4:11574540-11574559 | None:intergenic | 50.0% |
| AGGACGTGAGAAAGCTGTGG+AGG | + | chr4_4:11574311-11574330 | Msa0669700:CDS | 55.0% | |
| AGGACGTGAGAAAGCTGTGG+AGG | + | chr4_4:11574311-11574330 | Msa0669700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 11572916 | 11574830 | 11572916 | ID=Msa0669700;Name=Msa0669700 |
| chr4_4 | mRNA | 11572916 | 11574830 | 11572916 | ID=Msa0669700-mRNA-1;Parent=Msa0669700;Name=Msa0669700-mRNA-1;_AED=0.28;_eAED=0.28;_QI=168|1|1|1|1|1|2|222|220 |
| chr4_4 | exon | 11572916 | 11573407 | 11572916 | ID=Msa0669700-mRNA-1:exon:3443;Parent=Msa0669700-mRNA-1 |
| chr4_4 | exon | 11574270 | 11574830 | 11574270 | ID=Msa0669700-mRNA-1:exon:3444;Parent=Msa0669700-mRNA-1 |
| chr4_4 | five_prime_UTR | 11572916 | 11573083 | 11572916 | ID=Msa0669700-mRNA-1:five_prime_utr;Parent=Msa0669700-mRNA-1 |
| chr4_4 | CDS | 11573084 | 11573407 | 11573084 | ID=Msa0669700-mRNA-1:cds;Parent=Msa0669700-mRNA-1 |
| chr4_4 | CDS | 11574270 | 11574608 | 11574270 | ID=Msa0669700-mRNA-1:cds;Parent=Msa0669700-mRNA-1 |
| chr4_4 | three_prime_UTR | 11574609 | 11574830 | 11574609 | ID=Msa0669700-mRNA-1:three_prime_utr;Parent=Msa0669700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
