AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1277780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277780 MtrunA17_Chr8g0346561 95.667 300 10 2 1 297 1 300 0.0 586
Msa1277780 MtrunA17_Chr7g0275911 51.827 301 90 7 1 292 1 255 2.43e-91 271
Msa1277780 MtrunA17_Chr4g0070611 74.380 121 31 0 1 121 1 121 2.92e-65 207
Msa1277780 MtrunA17_Chr4g0070641 74.380 121 31 0 1 121 1 121 8.80e-65 201
Msa1277780 MtrunA17_Chr3g0121241 75.000 112 28 0 5 116 35 146 1.73e-63 202
Msa1277780 MtrunA17_Chr4g0037141 75.000 116 29 0 1 116 1 116 3.17e-62 198
Msa1277780 MtrunA17_Chr1g0187761 61.702 141 52 1 1 141 1 139 1.33e-60 193
Msa1277780 MtrunA17_Chr7g0261281 53.801 171 69 1 1 171 1 161 1.34e-60 194
Msa1277780 MtrunA17_Chr1g0194951 53.448 174 79 1 1 172 1 174 4.80e-60 195
Msa1277780 MtrunA17_Chr3g0131121 73.276 116 31 0 1 116 1 116 1.41e-59 192
Msa1277780 MtrunA17_Chr7g0274581 61.667 120 46 0 1 120 1 120 4.02e-58 185
Msa1277780 MtrunA17_Chr7g0217741 68.644 118 37 0 1 118 1 118 5.94e-58 188
Msa1277780 MtrunA17_Chr1g0167691 68.103 116 37 0 1 116 1 116 1.86e-57 185
Msa1277780 MtrunA17_Chr2g0323411 68.644 118 37 0 1 118 1 118 2.03e-57 187
Msa1277780 MtrunA17_Chr2g0281071 69.748 119 35 1 1 118 1 119 2.45e-57 187
Msa1277780 MtrunA17_Chr1g0167661 68.103 116 37 0 1 116 1 116 2.82e-57 184
Msa1277780 MtrunA17_Chr4g0060721 58.209 134 56 0 1 134 2 135 4.45e-57 186
Msa1277780 MtrunA17_Chr4g0039971 68.966 116 36 0 1 116 2 117 3.47e-56 185
Msa1277780 MtrunA17_Chr4g0068061 41.057 246 106 4 1 216 1 237 4.58e-56 184
Msa1277780 MtrunA17_Chr4g0042671 62.687 134 48 1 1 134 1 132 4.72e-56 186
Msa1277780 MtrunA17_Chr4g0048511 68.908 119 36 1 1 118 1 119 7.49e-56 184
Msa1277780 MtrunA17_Chr1g0203411 64.706 119 42 0 1 119 1 119 1.56e-55 181
Msa1277780 MtrunA17_Chr8g0349261 67.797 118 36 2 1 116 1 118 2.30e-55 181
Msa1277780 MtrunA17_Chr6g0453471 66.949 118 39 0 1 118 1 118 4.60e-55 182
Msa1277780 MtrunA17_Chr5g0435101 67.544 114 37 0 3 116 2 115 4.80e-55 177
Msa1277780 MtrunA17_Chr3g0115821 67.241 116 38 0 1 116 1 116 8.08e-55 181
Msa1277780 MtrunA17_Chr7g0254411 60.317 126 50 0 1 126 1 126 2.64e-54 179
Msa1277780 MtrunA17_Chr7g0217221 58.955 134 55 0 1 134 1 134 3.04e-54 177
Msa1277780 MtrunA17_Chr7g0269831 54.054 185 73 4 1 175 1 183 5.00e-54 179
Msa1277780 MtrunA17_Chr3g0092401 61.290 124 48 0 1 124 2 125 5.10e-54 178
Msa1277780 MtrunA17_Chr8g0385321 66.379 116 39 0 1 116 1 116 5.94e-53 175
Msa1277780 MtrunA17_Chr5g0410961 65.254 118 41 0 1 118 1 118 9.68e-53 176
Msa1277780 MtrunA17_Chr1g0151941 48.837 172 77 2 1 161 1 172 6.91e-52 171
Msa1277780 MtrunA17_Chr3g0110351 62.712 118 44 0 1 118 1 118 6.07e-51 170
Msa1277780 MtrunA17_Chr5g0434571 49.143 175 83 3 1 171 37 209 1.16e-50 171
Msa1277780 MtrunA17_Chr5g0395281 62.712 118 44 0 1 118 1 118 1.17e-50 169
Msa1277780 MtrunA17_Chr4g0057031 63.793 116 42 0 1 116 1 116 1.41e-50 168
Msa1277780 MtrunA17_Chr4g0044421 63.793 116 42 0 1 116 1 116 2.10e-50 165
Msa1277780 MtrunA17_Chr4g0055981 59.843 127 51 0 8 134 51 177 2.36e-50 166
Msa1277780 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 4.78e-50 168
Msa1277780 MtrunA17_Chr4g0022931 62.602 123 45 1 1 122 1 123 4.90e-50 166
Msa1277780 MtrunA17_Chr7g0228891 63.248 117 43 0 1 117 1 117 4.95e-50 166
Msa1277780 MtrunA17_Chr6g0452271 61.864 118 45 0 1 118 1 118 6.93e-50 168
Msa1277780 MtrunA17_Chr5g0400821 43.216 199 96 4 1 198 1 183 1.03e-49 167
Msa1277780 MtrunA17_Chr1g0152011 43.564 202 97 5 1 198 1 189 1.32e-49 167
Msa1277780 MtrunA17_Chr3g0135311 63.248 117 42 1 1 116 1 117 1.33e-49 167
Msa1277780 MtrunA17_Chr2g0311221 64.545 110 39 0 2 111 4 113 3.88e-49 166
Msa1277780 MtrunA17_Chr8g0343831 67.290 107 35 0 12 118 8 114 5.68e-49 163
Msa1277780 MtrunA17_Chr4g0028311 60.331 121 47 1 1 120 1 121 2.36e-48 164
Msa1277780 MtrunA17_Chr2g0323351 53.425 146 59 1 1 137 1 146 6.05e-48 160
Msa1277780 MtrunA17_Chr2g0327351 63.063 111 40 1 1 110 1 111 7.12e-48 162
Msa1277780 MtrunA17_Chr1g0193801 51.299 154 70 2 1 154 1 149 8.91e-48 164
Msa1277780 MtrunA17_Chr1g0193371 54.362 149 63 2 1 149 1 144 1.16e-47 163
Msa1277780 MtrunA17_Chr7g0270891 61.864 118 45 0 1 118 1 118 1.35e-47 163
Msa1277780 MtrunA17_Chr7g0264641 58.974 117 47 1 1 116 1 117 2.18e-47 159
Msa1277780 MtrunA17_Chr4g0058631 55.714 140 60 1 1 140 1 138 2.61e-47 162
Msa1277780 MtrunA17_Chr4g0022901 59.843 127 50 1 1 126 1 127 4.06e-47 159
Msa1277780 MtrunA17_Chr4g0022891 61.607 112 43 0 1 112 1 112 4.75e-47 158
Msa1277780 MtrunA17_Chr8g0387421 57.983 119 50 0 1 119 1 119 5.06e-47 160
Msa1277780 MtrunA17_Chr4g0022911 57.480 127 53 1 1 126 1 127 1.13e-46 158
Msa1277780 MtrunA17_Chr4g0072751 62.162 111 41 1 1 110 1 111 1.31e-46 160
Msa1277780 MtrunA17_Chr4g0054391 51.034 145 67 2 1 141 1 145 1.54e-46 158
Msa1277780 MtrunA17_Chr3g0103281 58.621 116 48 0 1 116 1 116 2.05e-46 159
Msa1277780 MtrunA17_Chr7g0228231 63.063 111 41 0 12 122 14 124 4.48e-46 154
Msa1277780 MtrunA17_Chr3g0117091 58.268 127 51 1 1 127 1 125 5.57e-46 158
Msa1277780 MtrunA17_Chr5g0397231 60.909 110 43 0 1 110 1 110 9.26e-46 157
Msa1277780 MtrunA17_Chr1g0209661 64.486 107 38 0 12 118 27 133 1.74e-45 156
Msa1277780 MtrunA17_Chr7g0271241 64.220 109 39 0 1 109 1 109 1.90e-45 157
Msa1277780 MtrunA17_Chr1g0194291 59.664 119 46 1 9 127 18 134 2.02e-45 154
Msa1277780 MtrunA17_Chr2g0330041 57.759 116 49 0 1 116 1 116 3.02e-45 157
Msa1277780 MtrunA17_Chr6g0487491 54.074 135 53 2 1 126 1 135 3.31e-45 154
Msa1277780 MtrunA17_Chr7g0240821 51.389 144 66 2 16 155 5 148 3.65e-45 152
Msa1277780 MtrunA17_Chr6g0450101 59.167 120 47 1 1 118 1 120 3.96e-45 152
Msa1277780 MtrunA17_Chr7g0220341 56.250 128 46 2 10 135 23 142 5.64e-45 153
Msa1277780 MtrunA17_Chr1g0168661 65.385 104 36 0 14 117 23 126 7.81e-45 152
Msa1277780 MtrunA17_Chr1g0211161 57.600 125 51 1 3 127 4 126 1.07e-44 151
Msa1277780 MtrunA17_Chr1g0186061 65.686 102 35 0 14 115 22 123 2.63e-44 151
Msa1277780 MtrunA17_Chr8g0342521 53.030 132 62 0 1 132 1 132 3.61e-44 153
Msa1277780 MtrunA17_Chr5g0417821 61.017 118 44 1 10 127 5 120 4.32e-44 152
Msa1277780 MtrunA17_Chr4g0022881 52.941 136 59 1 1 136 1 131 4.64e-44 150
Msa1277780 MtrunA17_Chr8g0342541 56.897 116 50 0 1 116 1 116 4.86e-44 153
Msa1277780 MtrunA17_Chr2g0309911 57.658 111 47 0 6 116 5 115 1.12e-43 151
Msa1277780 MtrunA17_Chr2g0294811 66.304 92 31 0 1 92 1 92 2.00e-43 144
Msa1277780 MtrunA17_Chr5g0434931 62.264 106 40 0 11 116 34 139 2.71e-43 149
Msa1277780 MtrunA17_Chr1g0194301 59.649 114 44 1 12 125 33 144 2.93e-43 149
Msa1277780 MtrunA17_Chr5g0434911 60.909 110 43 0 7 116 16 125 4.64e-43 149
Msa1277780 MtrunA17_Chr4g0032401 51.938 129 62 0 12 140 17 145 7.10e-43 149
Msa1277780 MtrunA17_Chr3g0088461 59.633 109 44 0 9 117 19 127 1.31e-42 149
Msa1277780 MtrunA17_Chr2g0328771 51.163 129 63 0 12 140 20 148 1.64e-42 148
Msa1277780 MtrunA17_Chr8g0360111 62.745 102 38 0 11 112 24 125 9.26e-42 145
Msa1277780 MtrunA17_Chr8g0342481 55.556 117 51 1 1 116 1 117 9.55e-42 148
Msa1277780 MtrunA17_Chr5g0434831 62.264 106 40 0 11 116 6 111 1.02e-41 142
Msa1277780 MtrunA17_Chr7g0228991 59.459 111 45 0 11 121 28 138 1.50e-41 144
Msa1277780 MtrunA17_Chr3g0080861 63.366 101 37 0 10 110 35 135 1.92e-41 150
Msa1277780 MtrunA17_Chr8g0354661 59.434 106 43 0 10 115 35 140 2.94e-40 147
Msa1277780 MtrunA17_Chr3g0099131 59.813 107 42 1 12 118 41 146 1.35e-39 145
Msa1277780 MtrunA17_Chr2g0327821 53.390 118 55 0 12 129 6 123 1.36e-39 138
Msa1277780 MtrunA17_Chr2g0322521 59.459 111 44 1 8 118 25 134 1.37e-39 142
Msa1277780 MtrunA17_Chr5g0434841 59.434 106 43 0 11 116 19 124 2.42e-39 140
Msa1277780 MtrunA17_Chr6g0470971 59.804 102 41 0 14 115 16 117 5.97e-39 138
Msa1277780 MtrunA17_Chr1g0154031 58.333 108 45 0 12 119 76 183 6.02e-39 141
Msa1277780 MtrunA17_Chr4g0068921 59.483 116 45 1 12 127 24 137 1.01e-38 135
Msa1277780 MtrunA17_Chr1g0203441 57.143 105 45 0 14 118 15 119 1.85e-38 136
Msa1277780 MtrunA17_Chr2g0293911 58.824 119 47 1 9 127 21 137 2.41e-38 137
Msa1277780 MtrunA17_Chr4g0042611 64.773 88 31 0 1 88 1 88 2.77e-38 130
Msa1277780 MtrunA17_Chr1g0180391 58.716 109 45 0 12 120 19 127 6.83e-38 134
Msa1277780 MtrunA17_Chr4g0030881 55.000 120 45 2 14 126 9 126 1.88e-37 133
Msa1277780 MtrunA17_Chr7g0247131 74.324 74 19 0 44 117 10 83 2.07e-37 134
Msa1277780 MtrunA17_Chr1g0192411 45.517 145 75 1 10 154 10 150 3.17e-37 136
Msa1277780 MtrunA17_Chr5g0395221 59.091 88 36 0 1 88 1 88 4.09e-33 117
Msa1277780 MtrunA17_Chr2g0323321 59.783 92 36 1 1 92 1 91 2.04e-31 113
Msa1277780 MtrunA17_Chr8g0342511 56.322 87 38 0 1 87 1 87 1.46e-30 110
Msa1277780 MtrunA17_Chr7g0229101 73.913 69 18 0 44 112 4 72 5.12e-30 112
Msa1277780 MtrunA17_Chr5g0440781 48.980 98 49 1 14 110 14 111 9.26e-30 111
Msa1277780 MtrunA17_Chr8g0342531 44.828 116 59 1 1 111 1 116 1.14e-29 110
Msa1277780 MtrunA17_Chr8g0342461 54.444 90 40 1 1 89 1 90 1.69e-29 109
Msa1277780 MtrunA17_Chr5g0401731 46.032 126 60 2 14 139 15 132 2.10e-29 114
Msa1277780 MtrunA17_Chr6g0454921 51.961 102 48 1 14 115 15 115 4.40e-29 110
Msa1277780 MtrunA17_Chr4g0013361 36.364 176 102 3 12 186 10 176 4.44e-29 112
Msa1277780 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 4.83e-29 108
Msa1277780 MtrunA17_Chr3g0099141 54.217 83 38 0 12 94 40 122 5.02e-29 108
Msa1277780 MtrunA17_Chr5g0440761 48.980 98 49 1 14 110 14 111 8.20e-29 111
Msa1277780 MtrunA17_Chr5g0441141 48.980 98 49 1 14 110 14 111 8.93e-29 111
Msa1277780 MtrunA17_Chr4g0053431 46.032 126 63 2 14 139 5 125 2.60e-28 110
Msa1277780 MtrunA17_Chr8g0334881 49.000 100 50 1 12 110 10 109 6.52e-28 110
Msa1277780 MtrunA17_Chr5g0441131 39.535 129 72 2 6 133 3 126 1.06e-27 105
Msa1277780 MtrunA17_Chr4g0008551 50.000 102 50 1 14 115 38 138 1.66e-27 109
Msa1277780 MtrunA17_Chr4g0058991 46.957 115 58 2 9 123 204 315 3.94e-27 110
Msa1277780 MtrunA17_Chr7g0229131 64.384 73 26 0 44 116 4 76 3.98e-27 103
Msa1277780 MtrunA17_Chr5g0434901 70.769 65 19 0 48 112 9 73 4.34e-27 102
Msa1277780 MtrunA17_Chr3g0133601 48.039 102 52 1 14 115 37 137 4.72e-26 102
Msa1277780 MtrunA17_Chr3g0117511 47.059 102 53 1 9 110 178 278 1.58e-25 105
Msa1277780 MtrunA17_Chr5g0429661 47.475 99 51 1 12 110 120 217 5.16e-25 102
Msa1277780 MtrunA17_Chr7g0238631 48.571 105 53 1 12 116 111 214 9.81e-24 100
Msa1277780 MtrunA17_Chr7g0238631 34.821 112 71 2 14 124 61 171 7.93e-12 65.5
Msa1277780 MtrunA17_Chr5g0437321 46.465 99 52 1 14 112 19 116 4.29e-23 96.3
Msa1277780 MtrunA17_Chr6g0480581 40.952 105 60 2 14 118 4 106 1.87e-22 93.6
Msa1277780 MtrunA17_Chr7g0228531 47.525 101 51 2 10 110 216 314 5.86e-22 95.1
Msa1277780 MtrunA17_Chr1g0157731 41.905 105 60 1 12 116 89 192 1.50e-21 94.7
Msa1277780 MtrunA17_Chr1g0157731 37.000 100 61 2 14 112 39 137 3.52e-11 63.9
Msa1277780 MtrunA17_Chr3g0139671 41.905 105 60 1 12 116 83 186 2.54e-21 94.4
Msa1277780 MtrunA17_Chr5g0425591 43.678 87 48 1 8 93 5 91 2.71e-21 86.3
Msa1277780 MtrunA17_Chr6g0460661 37.600 125 74 3 14 137 16 137 3.21e-21 88.2
Msa1277780 MtrunA17_Chr5g0417621 39.474 114 63 2 2 115 127 234 3.40e-21 92.8
Msa1277780 MtrunA17_Chr3g0125801 40.909 110 64 1 14 123 16 124 1.79e-20 89.4
Msa1277780 MtrunA17_Chr3g0093811 52.000 75 36 0 44 118 14 88 1.94e-20 88.6
Msa1277780 MtrunA17_Chr6g0453751 48.913 92 38 3 11 93 19 110 2.86e-20 84.7
Msa1277780 MtrunA17_Chr4g0042501 38.596 114 64 2 2 115 98 205 3.10e-20 90.1
Msa1277780 MtrunA17_Chr7g0238651 37.719 114 69 1 17 128 10 123 1.94e-19 87.4
Msa1277780 MtrunA17_Chr1g0177901 45.977 87 46 1 24 110 4 89 4.75e-19 83.6
Msa1277780 MtrunA17_Chr5g0397841 42.478 113 64 1 12 124 108 219 4.86e-19 87.0
Msa1277780 MtrunA17_Chr7g0228401 47.674 86 44 1 25 110 290 374 5.59e-19 87.0
Msa1277780 MtrunA17_Chr6g0460671 40.385 104 61 1 14 117 99 201 9.49e-19 85.1
Msa1277780 MtrunA17_Chr7g0228481 42.574 101 56 2 10 110 216 314 8.31e-18 83.2
Msa1277780 MtrunA17_Chr7g0233061 41.379 116 50 4 14 120 180 286 9.39e-18 82.4
Msa1277780 MtrunA17_Chr7g0254261 37.302 126 71 4 3 123 74 196 3.16e-17 80.9
Msa1277780 MtrunA17_Chr5g0434871 72.093 43 12 0 74 116 2 44 4.28e-17 74.3
Msa1277780 MtrunA17_Chr5g0416341 38.776 98 59 1 13 110 25 121 3.24e-16 78.6
Msa1277780 MtrunA17_Chr8g0362231 38.318 107 64 2 13 119 21 125 1.23e-15 76.6
Msa1277780 MtrunA17_Chr1g0193901 51.724 58 27 1 12 68 11 68 3.19e-14 67.8
Msa1277780 MtrunA17_Chr1g0193891 51.724 58 27 1 12 68 11 68 3.19e-14 67.8
Msa1277780 MtrunA17_Chr1g0193871 51.724 58 27 1 12 68 11 68 3.19e-14 67.8
Msa1277780 MtrunA17_Chr1g0193881 51.724 58 27 1 12 68 11 68 3.19e-14 67.8
Msa1277780 MtrunA17_Chr7g0247141 54.167 48 21 1 1 47 1 48 8.84e-14 65.1
Msa1277780 MtrunA17_Chr5g0434891 75.000 36 9 0 77 112 1 36 4.18e-13 65.9
Msa1277780 MtrunA17_Chr2g0322831 68.421 38 12 0 71 108 35 72 1.67e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277780 AT5G49330.1 74.138 116 30 0 1 116 1 116 1.36e-62 201
Msa1277780 AT3G13540.1 63.504 137 44 1 4 134 15 151 2.20e-62 198
Msa1277780 AT4G38620.1 75.000 116 29 0 1 116 1 116 2.75e-62 199
Msa1277780 AT1G22640.1 74.138 116 30 0 1 116 1 116 5.60e-62 197
Msa1277780 AT3G23250.1 60.432 139 55 0 1 139 1 139 4.01e-61 196
Msa1277780 AT2G47460.1 71.795 117 33 0 1 117 1 117 1.00e-60 197
Msa1277780 AT2G16720.1 71.552 116 33 0 1 116 1 116 2.29e-60 193
Msa1277780 AT1G06180.1 68.333 120 38 0 1 120 1 120 2.67e-60 192
Msa1277780 AT4G09460.1 72.414 116 32 0 1 116 1 116 3.61e-60 192
Msa1277780 AT3G62610.1 71.795 117 33 0 1 117 1 117 2.09e-59 193
Msa1277780 AT4G34990.1 72.881 118 32 0 1 118 1 118 2.11e-59 191
Msa1277780 AT2G31180.1 66.387 119 40 0 1 119 1 119 9.29e-59 189
Msa1277780 AT4G21440.1 68.644 118 37 0 1 118 1 118 4.42e-58 190
Msa1277780 AT5G16770.4 72.414 116 32 0 1 116 1 116 4.54e-58 189
Msa1277780 AT5G16770.3 72.414 116 32 0 1 116 1 116 4.54e-58 189
Msa1277780 AT3G02940.2 70.690 116 34 0 1 116 1 116 6.80e-58 188
Msa1277780 AT1G35515.1 68.103 116 37 0 1 116 1 116 8.13e-58 185
Msa1277780 AT5G16770.1 72.414 116 32 0 1 116 1 116 9.00e-58 189
Msa1277780 AT5G16770.2 72.414 116 32 0 1 116 1 116 9.00e-58 189
Msa1277780 AT3G02940.1 70.690 116 34 0 1 116 1 116 1.30e-57 188
Msa1277780 AT3G02940.3 70.690 116 34 0 1 116 1 116 1.30e-57 188
Msa1277780 AT4G28110.1 65.546 119 41 0 1 119 1 119 1.19e-56 184
Msa1277780 AT3G01140.2 69.828 116 35 0 1 116 1 116 3.50e-56 185
Msa1277780 AT3G61250.1 66.379 116 39 0 1 116 1 116 3.58e-56 183
Msa1277780 AT5G15310.4 62.222 135 49 1 1 135 1 133 4.76e-56 181
Msa1277780 AT5G15310.2 62.222 135 49 1 1 135 1 133 6.61e-56 183
Msa1277780 AT5G15310.1 62.222 135 49 1 1 135 1 133 7.57e-56 183
Msa1277780 AT3G47600.1 60.156 128 51 0 1 128 1 128 1.56e-55 183
Msa1277780 AT1G08810.1 63.866 119 43 0 1 119 1 119 2.05e-55 181
Msa1277780 AT4G05100.1 67.521 117 37 1 1 116 1 117 5.22e-55 181
Msa1277780 AT5G60890.1 62.992 127 45 1 1 127 1 125 6.34e-54 177
Msa1277780 AT3G01140.1 68.103 116 37 0 1 116 44 159 5.80e-53 178
Msa1277780 AT5G62470.2 50.658 152 75 0 1 152 1 152 6.16e-53 177
Msa1277780 AT5G10280.1 66.379 116 39 0 1 116 1 116 7.89e-53 176
Msa1277780 AT1G74650.1 64.655 116 41 0 1 116 1 116 8.00e-53 176
Msa1277780 AT1G79180.1 60.163 123 49 0 2 124 4 126 1.90e-52 174
Msa1277780 AT1G56160.1 58.462 130 54 0 2 131 4 133 3.54e-52 173
Msa1277780 AT1G16490.1 62.609 115 43 0 2 116 4 118 4.80e-52 172
Msa1277780 AT5G62470.1 50.658 152 74 1 1 152 1 151 1.37e-51 173
Msa1277780 AT4G17785.2 66.667 117 38 1 1 116 1 117 1.44e-51 173
Msa1277780 AT1G34670.1 65.517 116 40 0 1 116 1 116 2.04e-51 173
Msa1277780 AT4G17785.1 66.667 117 38 1 1 116 1 117 2.56e-51 172
Msa1277780 AT5G14750.1 65.517 116 39 1 14 128 18 133 2.64e-51 168
Msa1277780 AT3G28910.1 61.157 121 47 0 1 121 1 121 3.21e-51 171
Msa1277780 AT5G61420.2 59.843 127 49 1 1 127 1 125 3.95e-51 172
Msa1277780 AT5G16600.1 48.571 175 84 2 1 171 1 173 4.04e-51 171
Msa1277780 AT4G37780.1 60.331 121 47 1 1 120 1 121 8.48e-51 170
Msa1277780 AT1G66230.1 55.782 147 57 2 1 141 1 145 8.87e-51 169
Msa1277780 AT4G22680.1 53.741 147 66 1 1 147 1 145 9.12e-51 169
Msa1277780 AT4G12350.1 62.712 118 44 0 1 118 1 118 1.27e-50 169
Msa1277780 AT5G65230.1 62.931 116 43 0 1 116 1 116 1.49e-50 169
Msa1277780 AT1G09540.1 53.205 156 71 1 1 156 1 154 1.83e-50 171
Msa1277780 AT5G35550.1 67.890 109 35 0 12 120 14 122 2.02e-50 167
Msa1277780 AT5G07690.1 62.931 116 43 0 1 116 1 116 3.36e-50 169
Msa1277780 AT3G27920.1 60.656 122 48 0 14 135 16 137 4.92e-50 166
Msa1277780 AT1G18570.1 55.484 155 65 3 1 154 1 152 8.06e-50 169
Msa1277780 AT1G74080.1 64.912 114 40 0 1 114 1 114 2.50e-49 167
Msa1277780 AT5G54230.1 62.712 118 44 0 1 118 1 118 3.09e-49 166
Msa1277780 AT5G40330.1 68.932 103 32 0 14 116 14 116 3.15e-49 163
Msa1277780 AT5G26660.1 63.559 118 43 0 1 118 1 118 7.86e-49 166
Msa1277780 AT5G52600.1 63.158 114 42 0 8 121 8 121 2.67e-48 160
Msa1277780 AT5G07700.1 61.207 116 45 0 1 116 1 116 3.57e-48 164
Msa1277780 AT5G07700.2 61.207 116 45 0 1 116 1 116 3.57e-48 164
Msa1277780 AT5G14340.1 62.393 117 44 0 1 117 13 129 1.08e-47 161
Msa1277780 AT5G57620.1 55.556 135 56 2 1 131 1 135 1.09e-47 162
Msa1277780 AT4G01680.3 61.538 117 45 0 1 117 1 117 1.33e-47 159
Msa1277780 AT1G57560.1 61.017 118 46 0 1 118 1 118 1.52e-47 162
Msa1277780 AT1G57560.2 61.017 118 46 0 1 118 1 118 3.03e-47 160
Msa1277780 AT5G65790.1 59.016 122 49 1 1 121 1 122 3.31e-47 162
Msa1277780 AT3G49690.1 58.197 122 50 1 1 121 1 122 4.34e-47 160
Msa1277780 AT5G62320.1 60.484 124 42 1 2 118 3 126 4.60e-47 158
Msa1277780 AT4G01680.1 61.538 117 45 0 1 117 1 117 5.58e-47 160
Msa1277780 AT5G23000.1 59.829 117 46 1 1 116 1 117 5.64e-47 160
Msa1277780 AT2G32460.2 58.871 124 47 1 11 134 5 124 8.00e-47 164
Msa1277780 AT2G32460.1 58.871 124 47 1 11 134 17 136 9.55e-47 164
Msa1277780 AT1G63910.1 57.627 118 50 0 1 118 1 118 9.79e-47 161
Msa1277780 AT5G56110.1 59.483 116 47 0 1 116 1 116 1.04e-46 159
Msa1277780 AT3G30210.1 45.000 180 94 2 11 188 26 202 2.67e-46 157
Msa1277780 AT3G12820.1 60.526 114 45 0 3 116 5 118 3.08e-46 156
Msa1277780 AT3G13890.2 58.120 117 49 0 1 117 1 117 4.86e-46 159
Msa1277780 AT3G24310.1 62.069 116 44 0 11 126 17 132 5.99e-46 156
Msa1277780 AT1G66370.1 62.609 115 39 1 1 115 1 111 8.10e-46 155
Msa1277780 AT3G27810.1 56.667 120 52 0 8 127 16 135 9.06e-46 154
Msa1277780 AT2G36890.1 59.829 117 46 1 1 116 1 117 1.21e-45 156
Msa1277780 AT2G36890.2 59.829 117 46 1 1 116 42 158 1.63e-45 157
Msa1277780 AT1G79180.2 47.436 156 49 1 2 124 4 159 1.68e-45 157
Msa1277780 AT4G13480.1 67.308 104 34 0 14 117 8 111 2.00e-45 154
Msa1277780 AT5G40350.1 57.500 120 51 0 12 131 17 136 2.07e-45 153
Msa1277780 AT5G12870.1 59.459 111 45 0 12 122 18 128 4.73e-45 154
Msa1277780 AT3G01530.1 63.208 106 39 0 12 117 25 130 7.14e-45 151
Msa1277780 AT1G74430.1 58.475 118 49 0 1 118 1 118 8.58e-45 153
Msa1277780 AT3G28470.1 60.000 110 44 0 1 110 1 110 2.54e-44 153
Msa1277780 AT4G26930.1 63.303 109 39 1 10 118 17 124 1.20e-43 153
Msa1277780 AT3G08500.1 61.468 109 42 0 9 117 27 135 1.62e-43 152
Msa1277780 AT4G01680.2 55.814 129 45 1 1 117 1 129 1.63e-43 152
Msa1277780 AT3G13890.1 53.968 126 49 1 1 117 1 126 4.67e-43 151
Msa1277780 AT2G47190.1 57.265 117 48 1 12 128 20 134 5.16e-43 149
Msa1277780 AT1G68320.1 62.617 107 40 0 12 118 19 125 1.65e-42 148
Msa1277780 AT1G25340.1 62.857 105 39 0 14 118 20 124 1.74e-42 147
Msa1277780 AT3G12720.1 54.955 111 50 0 6 116 16 126 1.22e-41 146
Msa1277780 AT1G18710.1 54.237 118 54 0 1 118 1 118 1.64e-41 144
Msa1277780 AT1G48000.1 60.952 105 41 0 10 114 30 134 1.74e-41 144
Msa1277780 AT3G46130.1 55.172 116 52 0 11 126 8 123 1.11e-40 142
Msa1277780 AT5G55020.1 59.633 109 43 1 10 118 24 131 2.86e-40 147
Msa1277780 AT5G59780.3 55.752 113 50 0 14 126 10 122 2.96e-40 140
Msa1277780 AT1G56650.1 66.667 105 35 0 11 115 7 111 3.08e-40 140
Msa1277780 AT1G66380.1 65.714 105 36 0 11 115 7 111 8.99e-40 136
Msa1277780 AT5G06100.1 57.407 108 45 1 11 118 31 137 1.59e-39 144
Msa1277780 AT2G26960.1 58.182 110 45 1 9 118 17 125 3.52e-39 142
Msa1277780 AT5G06100.5 57.407 108 45 1 11 118 31 137 6.63e-39 143
Msa1277780 AT5G06100.2 57.407 108 45 1 11 118 31 137 6.63e-39 143
Msa1277780 AT5G06100.3 57.407 108 45 1 11 118 31 137 6.63e-39 143
Msa1277780 AT5G06100.4 57.407 108 45 1 11 118 31 137 6.63e-39 143
Msa1277780 AT3G11440.2 57.009 107 45 1 12 118 41 146 7.03e-39 142
Msa1277780 AT1G66390.1 65.714 105 36 0 11 115 7 111 1.27e-38 137
Msa1277780 AT1G25340.2 60.000 105 37 1 14 118 20 119 2.95e-38 136
Msa1277780 AT3G11440.3 57.009 107 45 1 12 118 41 146 3.24e-38 142
Msa1277780 AT3G11440.4 57.009 107 45 1 12 118 41 146 3.24e-38 142
Msa1277780 AT3G11440.1 57.009 107 45 1 12 118 41 146 3.24e-38 142
Msa1277780 AT3G53200.1 58.491 106 44 0 12 117 9 114 4.00e-38 135
Msa1277780 AT4G25560.1 55.357 112 50 0 14 125 12 123 6.03e-38 135
Msa1277780 AT1G25340.3 60.000 105 37 1 14 118 20 119 6.71e-38 136
Msa1277780 AT3G06490.1 58.824 119 47 1 9 127 16 132 1.14e-37 136
Msa1277780 AT5G14750.3 76.623 77 15 1 40 116 13 86 1.61e-37 131
Msa1277780 AT5G49620.1 58.621 116 46 1 12 127 26 139 6.39e-37 134
Msa1277780 AT5G35550.2 76.316 76 18 0 45 120 50 125 1.95e-35 129
Msa1277780 AT3G48920.1 51.852 108 52 0 14 121 20 127 1.13e-33 124
Msa1277780 AT5G52260.1 54.206 107 49 0 14 120 14 120 1.57e-33 124
Msa1277780 AT5G49620.2 51.128 133 49 2 9 127 23 153 2.14e-33 125
Msa1277780 AT5G26660.2 69.737 76 23 0 43 118 12 87 2.55e-32 122
Msa1277780 AT3G47600.2 63.095 84 31 0 45 128 39 122 1.07e-31 120
Msa1277780 AT3G27810.2 60.241 83 33 0 45 127 4 86 6.46e-31 114
Msa1277780 AT3G46130.3 60.241 83 33 0 44 126 9 91 3.57e-30 114
Msa1277780 AT5G40350.2 58.621 87 36 0 45 131 5 91 4.10e-30 112
Msa1277780 AT3G46130.4 59.524 84 34 0 43 126 18 101 5.42e-30 114
Msa1277780 AT5G59780.2 59.524 84 34 0 43 126 18 101 8.36e-30 112
Msa1277780 AT3G12820.2 70.000 70 21 0 47 116 1 70 1.11e-29 111
Msa1277780 AT1G22640.3 83.051 59 10 0 58 116 1 59 1.89e-29 111
Msa1277780 AT3G53200.2 65.333 75 26 0 43 117 7 81 3.82e-29 110
Msa1277780 AT2G26950.1 44.037 109 61 0 6 114 10 118 1.09e-28 113
Msa1277780 AT4G37260.1 49.550 111 55 1 14 124 13 122 4.42e-28 110
Msa1277780 AT5G14750.4 76.271 59 14 0 58 116 1 59 2.54e-27 103
Msa1277780 AT5G14750.2 76.271 59 14 0 58 116 1 59 2.54e-27 103
Msa1277780 AT1G66380.3 73.611 72 19 0 44 115 7 78 1.45e-26 100
Msa1277780 AT3G55730.1 52.941 102 47 1 14 115 56 156 1.51e-26 107
Msa1277780 AT3G23250.2 57.317 82 35 0 58 139 1 82 1.56e-26 104
Msa1277780 AT3G27785.1 47.368 114 57 2 9 122 184 294 2.41e-26 107
Msa1277780 AT3G50060.1 39.370 127 76 1 14 140 6 131 2.62e-26 105
Msa1277780 AT2G23290.1 48.718 117 53 2 14 124 13 128 2.95e-26 105
Msa1277780 AT3G60460.1 47.000 100 52 1 12 110 11 110 3.19e-26 105
Msa1277780 AT4G18770.1 45.299 117 57 3 9 123 212 323 4.99e-25 103
Msa1277780 AT5G40360.1 47.423 97 50 1 14 110 158 253 8.22e-25 102
Msa1277780 AT1G71030.2 63.636 66 24 0 51 116 5 70 1.24e-24 98.2
Msa1277780 AT1G71030.1 63.636 66 24 0 51 116 19 84 1.55e-24 98.2
Msa1277780 AT3G09230.1 45.794 107 49 2 14 116 55 156 3.30e-24 101
Msa1277780 AT5G58850.1 37.821 156 89 3 12 160 103 257 4.94e-24 101
Msa1277780 AT1G18960.1 46.602 103 52 2 14 116 10 109 5.36e-24 99.4
Msa1277780 AT2G39880.1 48.039 102 52 1 14 115 50 150 6.11e-24 100
Msa1277780 AT5G02320.1 45.455 110 51 2 12 117 125 229 2.08e-23 100
Msa1277780 AT5G02320.1 33.333 114 70 3 14 124 75 185 2.45e-11 64.7
Msa1277780 AT5G02320.2 45.455 110 51 2 12 117 125 229 2.08e-23 100
Msa1277780 AT5G02320.2 33.333 114 70 3 14 124 75 185 2.45e-11 64.7
Msa1277780 AT5G02320.3 45.455 110 51 2 12 117 65 169 2.57e-23 99.8
Msa1277780 AT5G02320.3 33.333 114 70 3 14 124 15 125 2.73e-11 64.3
Msa1277780 AT5G11050.1 39.535 129 73 2 14 138 105 232 3.43e-23 99.0
Msa1277780 AT1G66380.2 57.317 82 35 0 11 92 7 88 7.01e-23 91.3
Msa1277780 AT5G11510.3 42.991 107 56 2 12 116 79 182 1.35e-22 98.2
Msa1277780 AT5G11510.3 35.000 100 63 2 14 112 29 127 5.19e-11 63.9
Msa1277780 AT5G11510.1 42.991 107 56 2 12 116 79 182 1.35e-22 98.2
Msa1277780 AT5G11510.1 35.000 100 63 2 14 112 29 127 5.19e-11 63.9
Msa1277780 AT5G11510.4 42.991 107 56 2 12 116 79 182 1.35e-22 98.2
Msa1277780 AT5G11510.4 35.000 100 63 2 14 112 29 127 5.19e-11 63.9
Msa1277780 AT5G11510.2 42.991 107 56 2 12 116 79 182 1.68e-22 98.2
Msa1277780 AT5G11510.2 35.000 100 63 2 14 112 29 127 4.04e-11 63.9
Msa1277780 AT5G11510.5 42.991 107 56 2 12 116 79 182 1.79e-22 97.8
Msa1277780 AT5G11510.5 35.000 100 63 2 14 112 29 127 4.07e-11 63.9
Msa1277780 AT3G09370.1 45.455 110 51 2 12 117 128 232 2.45e-22 97.1
Msa1277780 AT3G09370.1 33.929 112 72 2 14 124 78 188 4.66e-11 63.5
Msa1277780 AT3G09370.2 45.455 110 51 2 12 117 133 237 2.51e-22 97.1
Msa1277780 AT3G09370.2 33.929 112 72 2 14 124 83 193 4.56e-11 63.5
Msa1277780 AT1G69560.1 40.000 110 65 1 8 117 101 209 3.27e-22 95.1
Msa1277780 AT5G67300.1 42.149 121 60 3 14 129 6 121 3.33e-22 94.7
Msa1277780 AT3G09370.3 45.455 110 51 2 12 117 141 245 3.67e-22 96.7
Msa1277780 AT3G09370.3 33.929 112 72 2 14 124 91 201 4.81e-11 63.5
Msa1277780 AT1G69560.2 40.000 110 65 1 8 117 117 225 4.51e-22 94.7
Msa1277780 AT1G17950.1 38.462 117 71 1 14 130 5 120 2.06e-21 91.3
Msa1277780 AT1G26780.1 42.308 104 59 1 12 115 96 198 6.72e-21 90.5
Msa1277780 AT1G26780.2 42.308 104 59 1 12 115 96 198 8.62e-21 91.3
Msa1277780 AT4G32730.5 40.952 105 61 1 12 116 85 188 1.52e-20 92.4
Msa1277780 AT4G32730.4 40.952 105 61 1 12 116 85 188 1.52e-20 92.4
Msa1277780 AT4G32730.3 40.952 105 61 1 12 116 85 188 1.52e-20 92.4
Msa1277780 AT4G32730.2 40.952 105 61 1 12 116 85 188 1.52e-20 92.4
Msa1277780 AT4G32730.1 40.952 105 61 1 12 116 85 188 1.58e-20 92.0
Msa1277780 AT2G25230.1 43.137 102 57 1 9 110 21 121 5.70e-20 87.0
Msa1277780 AT5G17800.1 38.525 122 71 2 14 132 93 213 1.40e-19 87.4
Msa1277780 AT3G29020.1 35.780 109 69 1 14 122 65 172 2.25e-19 85.5
Msa1277780 AT1G73410.1 39.815 108 64 1 14 121 6 112 4.00e-19 84.7
Msa1277780 AT3G29020.2 35.780 109 69 1 14 122 67 174 4.40e-19 85.9
Msa1277780 AT4G33450.1 34.400 125 76 2 3 127 13 131 8.25e-19 84.3
Msa1277780 AT1G73410.2 39.815 108 64 1 14 121 6 112 1.38e-18 82.4
Msa1277780 AT2G37630.1 37.607 117 71 1 17 131 7 123 2.05e-18 84.7
Msa1277780 AT5G39700.1 38.938 113 67 2 15 127 57 167 4.99e-18 80.9
Msa1277780 AT2G02820.3 39.796 98 58 1 13 110 29 125 4.90e-17 80.5
Msa1277780 AT1G14350.2 36.283 113 71 1 13 125 24 135 6.39e-17 80.9
Msa1277780 AT1G14350.1 36.283 113 71 1 13 125 24 135 6.39e-17 80.9
Msa1277780 AT4G00540.2 38.739 111 64 2 11 118 100 209 1.51e-16 79.7
Msa1277780 AT2G02820.1 39.796 98 58 1 13 110 29 125 1.52e-16 80.1
Msa1277780 AT2G02820.2 39.796 98 58 1 13 110 29 125 2.53e-16 79.3
Msa1277780 AT4G00540.1 38.739 111 64 2 11 118 98 207 2.97e-16 79.0
Msa1277780 AT3G46130.2 56.140 57 25 0 70 126 1 57 5.14e-16 75.1
Msa1277780 AT5G59780.1 56.140 57 25 0 70 126 1 57 5.58e-16 74.7
Msa1277780 AT5G40430.1 38.235 102 61 2 9 110 49 148 2.03e-15 74.7
Msa1277780 AT4G25560.2 58.929 56 23 0 70 125 2 57 3.30e-15 73.6
Msa1277780 AT3G28910.2 62.222 45 17 0 77 121 1 45 2.30e-12 65.9
Msa1277780 AT1G74650.3 70.000 40 12 0 77 116 1 40 2.80e-12 65.9
Msa1277780 AT1G22640.2 86.207 29 4 0 88 116 16 44 4.73e-11 61.2
Msa1277780 AT5G53200.1 57.500 40 17 0 69 108 32 71 5.90e-11 58.9
Msa1277780 AT1G14350.3 41.096 73 43 0 56 128 23 95 6.55e-11 62.8
Msa1277780 AT1G14350.4 41.096 73 43 0 56 128 23 95 6.55e-11 62.8
Msa1277780 AT4G01060.3 57.500 40 17 0 69 108 32 71 7.91e-11 57.8
Msa1277780 AT4G01060.2 57.500 40 17 0 69 108 31 70 9.42e-11 57.4

Find 42 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGATTACATTCACTTCT+TGG 0.201647 8_3:-13570753 Msa1277780:CDS
ATGTTACCTCTCTTTATATC+TGG 0.282806 8_3:+13570801 None:intergenic
ATTATGAGATCATCTTCTTC+TGG 0.285264 8_3:+13570774 None:intergenic
ATGGGAGAAAATGACGGATT+TGG 0.291412 8_3:-13570306 Msa1277780:CDS
TGTAAGCAATGCATCTTCTT+TGG 0.312547 8_3:+13571371 None:intergenic
ATAAAGTGGAAAAGCAATTA+AGG 0.318435 8_3:+13571491 None:intergenic
AATGAACCACTATCCGTTCT+TGG 0.361966 8_3:+13570432 None:intergenic
ATTCACTTCTTGGAAATAGA+TGG 0.376840 8_3:-13570743 Msa1277780:CDS
TGGGAGAAAATGACGGATTT+GGG 0.377302 8_3:-13570305 Msa1277780:CDS
ACCTTTGTGCAATCCAACTT+TGG 0.431367 8_3:+13571404 None:intergenic
GTTTGTGAGGTTGGTGAGAT+GGG 0.433328 8_3:-13570324 Msa1277780:CDS
GGAAAAGTTGTAGACTTAGA+TGG 0.433825 8_3:-13570839 Msa1277780:CDS
TTTGACACTTGTGGTGATCA+TGG 0.439445 8_3:-13570228 Msa1277780:CDS
GCAATTAAGGTAGAACTAGA+AGG 0.439483 8_3:+13571504 None:intergenic
ATTATTGTTTGAATCAAAGA+AGG 0.441230 8_3:+13570119 None:intergenic
ACAATGAAATAAAGAACTAC+TGG 0.460692 8_3:-13570686 Msa1277780:CDS
CAACAAAAGAAGAATCAAAC+TGG 0.461443 8_3:+13570145 None:intergenic
AATAACGTTGTTTGTGAGGT+TGG 0.466414 8_3:-13570333 Msa1277780:CDS
ACAAAATATGTTCAAGCTCA+TGG 0.468502 8_3:-13571351 Msa1277780:CDS
TGTTTGTGAGGTTGGTGAGA+TGG 0.469309 8_3:-13570325 Msa1277780:CDS
GCACACTCTAACTTATAAAG+TGG 0.469351 8_3:+13571477 None:intergenic
AATTTACCAAGAACGGATAG+TGG 0.472921 8_3:-13570438 Msa1277780:CDS
ATTTCATTGTCTGTTCGTCC+TGG 0.476703 8_3:+13570699 None:intergenic
AGCTTTAAATTTACCAAGAA+CGG 0.477942 8_3:-13570445 Msa1277780:CDS
GCTCCTTGTTGTGCCAAAGT+TGG 0.480146 8_3:-13571417 Msa1277780:CDS
CTTATAGCTGGAAGATTACC+AGG 0.481843 8_3:-13570717 Msa1277780:CDS
GCATCTTCTTTGGTAGTCCA+TGG 0.496385 8_3:+13571381 None:intergenic
AATAGATGGTCACTTATAGC+TGG 0.507579 8_3:-13570729 Msa1277780:CDS
TATGAATCAAATTCATCAAA+CGG 0.517335 8_3:-13570405 Msa1277780:CDS
AAGCTCATGGTGAAGGCCAA+TGG 0.528608 8_3:-13571338 Msa1277780:CDS
TTGCAGGGCTTCTTAGATGT+GGG 0.531801 8_3:-13570860 Msa1277780:intron
TAACAATAACGTTGTTTGTG+AGG 0.535786 8_3:-13570337 Msa1277780:CDS
GTTGCAGGGCTTCTTAGATG+TGG 0.541093 8_3:-13570861 Msa1277780:intron
CAACGTTGAAAGATTAGAGA+TGG 0.549953 8_3:-13570265 Msa1277780:CDS
TTGGATTGCACAAAGGTCCA+TGG 0.555842 8_3:-13571398 Msa1277780:CDS
TATGTTCAAGCTCATGGTGA+AGG 0.563260 8_3:-13571345 Msa1277780:CDS
GGTGAGATGGGAGAAAATGA+CGG 0.570961 8_3:-13570312 Msa1277780:CDS
ATACTTGCAACTCTTGAACA+TGG 0.622142 8_3:-13570181 Msa1277780:CDS
CTTAGACCAGATATAAAGAG+AGG 0.627760 8_3:-13570807 Msa1277780:CDS
AATCCAACTTTGGCACAACA+AGG 0.628485 8_3:+13571414 None:intergenic
GCCAAAGTTGGATTGCACAA+AGG 0.632348 8_3:-13571405 Msa1277780:CDS
AAAGAAGAAGAGAAACAACA+AGG 0.650013 8_3:-13570562 Msa1277780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATTCAAACAATAATTA+AGG - chr8_3:13571510-13571529 Msa1277780:five_prime_UTR 15.0%
!! ACAAAACCTAAACAAAAAAA+TGG - chr8_3:13570179-13570198 Msa1277780:CDS 20.0%
!! CAAAACCTAAACAAAAAAAT+GGG - chr8_3:13570180-13570199 Msa1277780:CDS 20.0%
!! TATATGAAAGAGAGATTAAA+TGG + chr8_3:13570347-13570366 None:intergenic 20.0%
!!! ACTTTTTTGAAGATGATTAA+AGG + chr8_3:13570466-13570485 None:intergenic 20.0%
!! TATGAATCAAATTCATCAAA+CGG - chr8_3:13571219-13571238 Msa1277780:intron 20.0%
!! ATTATTGTTTGAATCAAAGA+AGG + chr8_3:13571508-13571527 None:intergenic 20.0%
!! ACAAAACCTAAACAAAAAAA+TGG - chr8_3:13570179-13570198 Msa1277780:CDS 20.0%
!! CAAAACCTAAACAAAAAAAT+GGG - chr8_3:13570180-13570199 Msa1277780:CDS 20.0%
!! TATATGAAAGAGAGATTAAA+TGG + chr8_3:13570347-13570366 None:intergenic 20.0%
!!! ACTTTTTTGAAGATGATTAA+AGG + chr8_3:13570466-13570485 None:intergenic 20.0%
!! TATGAATCAAATTCATCAAA+CGG - chr8_3:13571219-13571238 Msa1277780:intron 20.0%
!! ATTATTGTTTGAATCAAAGA+AGG + chr8_3:13571508-13571527 None:intergenic 20.0%
! ATAAAGTGGAAAAGCAATTA+AGG + chr8_3:13570136-13570155 None:intergenic 25.0%
!!! TTTTGAAGATGATTAAAGGT+AGG + chr8_3:13570462-13570481 None:intergenic 25.0%
! CCACTAAATAATTAAATCCA+CGG + chr8_3:13570618-13570637 None:intergenic 25.0%
! ATAAGATTACATTCACTTCT+TGG - chr8_3:13570871-13570890 Msa1277780:intron 25.0%
! ACAATGAAATAAAGAACTAC+TGG - chr8_3:13570938-13570957 Msa1277780:intron 25.0%
!! GATTTCTTTGCATCTTTTTA+AGG + chr8_3:13570975-13570994 None:intergenic 25.0%
!!! TTGTTGTTGTTCTTTTTCTT+GGG + chr8_3:13571042-13571061 None:intergenic 25.0%
!!! TTTGTTGTTGTTCTTTTTCT+TGG + chr8_3:13571043-13571062 None:intergenic 25.0%
! AAGAAAAGTGACAAGAAAAA+AGG - chr8_3:13571087-13571106 Msa1277780:intron 25.0%
!! TAGCTTTTGGTAAATAAACT+TGG + chr8_3:13571149-13571168 None:intergenic 25.0%
!! GCTTTTATTCTAATAGCTTT+TGG + chr8_3:13571162-13571181 None:intergenic 25.0%
!!! AGCTTTAAATTTACCAAGAA+CGG - chr8_3:13571179-13571198 Msa1277780:intron 25.0%
!! TTTGTGTTTCTTCTTTTTGT+TGG + chr8_3:13571248-13571267 None:intergenic 25.0%
! ATAAAGTGGAAAAGCAATTA+AGG + chr8_3:13570136-13570155 None:intergenic 25.0%
!!! TTTTGAAGATGATTAAAGGT+AGG + chr8_3:13570462-13570481 None:intergenic 25.0%
! CCACTAAATAATTAAATCCA+CGG + chr8_3:13570618-13570637 None:intergenic 25.0%
! ATAAGATTACATTCACTTCT+TGG - chr8_3:13570871-13570890 Msa1277780:intron 25.0%
! ACAATGAAATAAAGAACTAC+TGG - chr8_3:13570938-13570957 Msa1277780:intron 25.0%
!! GATTTCTTTGCATCTTTTTA+AGG + chr8_3:13570975-13570994 None:intergenic 25.0%
!!! TTGTTGTTGTTCTTTTTCTT+GGG + chr8_3:13571042-13571061 None:intergenic 25.0%
!!! TTTGTTGTTGTTCTTTTTCT+TGG + chr8_3:13571043-13571062 None:intergenic 25.0%
! AAGAAAAGTGACAAGAAAAA+AGG - chr8_3:13571087-13571106 Msa1277780:intron 25.0%
!! TAGCTTTTGGTAAATAAACT+TGG + chr8_3:13571149-13571168 None:intergenic 25.0%
!! GCTTTTATTCTAATAGCTTT+TGG + chr8_3:13571162-13571181 None:intergenic 25.0%
!!! AGCTTTAAATTTACCAAGAA+CGG - chr8_3:13571179-13571198 Msa1277780:intron 25.0%
!! TTTGTGTTTCTTCTTTTTGT+TGG + chr8_3:13571248-13571267 None:intergenic 25.0%
!!! CTCTTCCCATTTTTTTGTTT+AGG + chr8_3:13570188-13570207 None:intergenic 30.0%
ACAAAATATGTTCAAGCTCA+TGG - chr8_3:13570273-13570292 Msa1277780:CDS 30.0%
!!! AAACTCTTACCAGCTTTTTT+GGG + chr8_3:13570321-13570340 None:intergenic 30.0%
!!! AAAACTCTTACCAGCTTTTT+TGG + chr8_3:13570322-13570341 None:intergenic 30.0%
AGGTAAGTTAGCAAAAATCA+TGG + chr8_3:13570583-13570602 None:intergenic 30.0%
CCGTGGATTTAATTATTTAG+TGG - chr8_3:13570615-13570634 Msa1277780:CDS 30.0%
!! TATGTGCTTAATTTGTTGCA+GGG - chr8_3:13570749-13570768 Msa1277780:CDS 30.0%
ATGTTACCTCTCTTTATATC+TGG + chr8_3:13570826-13570845 None:intergenic 30.0%
ATTATGAGATCATCTTCTTC+TGG + chr8_3:13570853-13570872 None:intergenic 30.0%
ATTCACTTCTTGGAAATAGA+TGG - chr8_3:13570881-13570900 Msa1277780:intron 30.0%
AAAGAAGAAGAGAAACAACA+AGG - chr8_3:13571062-13571081 Msa1277780:intron 30.0%
TAACAATAACGTTGTTTGTG+AGG - chr8_3:13571287-13571306 Msa1277780:intron 30.0%
CAACAAAAGAAGAATCAAAC+TGG + chr8_3:13571482-13571501 None:intergenic 30.0%
!!! CTCTTCCCATTTTTTTGTTT+AGG + chr8_3:13570188-13570207 None:intergenic 30.0%
ACAAAATATGTTCAAGCTCA+TGG - chr8_3:13570273-13570292 Msa1277780:CDS 30.0%
!!! AAACTCTTACCAGCTTTTTT+GGG + chr8_3:13570321-13570340 None:intergenic 30.0%
!!! AAAACTCTTACCAGCTTTTT+TGG + chr8_3:13570322-13570341 None:intergenic 30.0%
AGGTAAGTTAGCAAAAATCA+TGG + chr8_3:13570583-13570602 None:intergenic 30.0%
CCGTGGATTTAATTATTTAG+TGG - chr8_3:13570615-13570634 Msa1277780:CDS 30.0%
!! TATGTGCTTAATTTGTTGCA+GGG - chr8_3:13570749-13570768 Msa1277780:CDS 30.0%
ATGTTACCTCTCTTTATATC+TGG + chr8_3:13570826-13570845 None:intergenic 30.0%
ATTATGAGATCATCTTCTTC+TGG + chr8_3:13570853-13570872 None:intergenic 30.0%
ATTCACTTCTTGGAAATAGA+TGG - chr8_3:13570881-13570900 Msa1277780:intron 30.0%
AAAGAAGAAGAGAAACAACA+AGG - chr8_3:13571062-13571081 Msa1277780:intron 30.0%
TAACAATAACGTTGTTTGTG+AGG - chr8_3:13571287-13571306 Msa1277780:intron 30.0%
CAACAAAAGAAGAATCAAAC+TGG + chr8_3:13571482-13571501 None:intergenic 30.0%
GCAATTAAGGTAGAACTAGA+AGG + chr8_3:13570123-13570142 None:intergenic 35.0%
GCACACTCTAACTTATAAAG+TGG + chr8_3:13570150-13570169 None:intergenic 35.0%
TGTAAGCAATGCATCTTCTT+TGG + chr8_3:13570256-13570275 None:intergenic 35.0%
!! TTTTGGGAAGTGATTTCCAT+TGG + chr8_3:13570305-13570324 None:intergenic 35.0%
AAATCACTTCCCAAAAAAGC+TGG - chr8_3:13570309-13570328 Msa1277780:CDS 35.0%
!!! TACCTTTTTGTTTTTAGCCG+TGG - chr8_3:13570598-13570617 Msa1277780:CDS 35.0%
ATCCACGGCTAAAAACAAAA+AGG + chr8_3:13570603-13570622 None:intergenic 35.0%
!! CTATGTGCTTAATTTGTTGC+AGG - chr8_3:13570748-13570767 Msa1277780:CDS 35.0%
GGAAAAGTTGTAGACTTAGA+TGG - chr8_3:13570785-13570804 Msa1277780:CDS 35.0%
CTTAGACCAGATATAAAGAG+AGG - chr8_3:13570817-13570836 Msa1277780:CDS 35.0%
AATAGATGGTCACTTATAGC+TGG - chr8_3:13570895-13570914 Msa1277780:intron 35.0%
AATTTACCAAGAACGGATAG+TGG - chr8_3:13571186-13571205 Msa1277780:intron 35.0%
AATAACGTTGTTTGTGAGGT+TGG - chr8_3:13571291-13571310 Msa1277780:intron 35.0%
CAACGTTGAAAGATTAGAGA+TGG - chr8_3:13571359-13571378 Msa1277780:CDS 35.0%
!!! GAGTCATATTTTGACACTTG+TGG - chr8_3:13571387-13571406 Msa1277780:CDS 35.0%
ATACTTGCAACTCTTGAACA+TGG - chr8_3:13571443-13571462 Msa1277780:exon 35.0%
GCAATTAAGGTAGAACTAGA+AGG + chr8_3:13570123-13570142 None:intergenic 35.0%
GCACACTCTAACTTATAAAG+TGG + chr8_3:13570150-13570169 None:intergenic 35.0%
TGTAAGCAATGCATCTTCTT+TGG + chr8_3:13570256-13570275 None:intergenic 35.0%
!! TTTTGGGAAGTGATTTCCAT+TGG + chr8_3:13570305-13570324 None:intergenic 35.0%
AAATCACTTCCCAAAAAAGC+TGG - chr8_3:13570309-13570328 Msa1277780:CDS 35.0%
!!! TACCTTTTTGTTTTTAGCCG+TGG - chr8_3:13570598-13570617 Msa1277780:CDS 35.0%
ATCCACGGCTAAAAACAAAA+AGG + chr8_3:13570603-13570622 None:intergenic 35.0%
!! CTATGTGCTTAATTTGTTGC+AGG - chr8_3:13570748-13570767 Msa1277780:CDS 35.0%
GGAAAAGTTGTAGACTTAGA+TGG - chr8_3:13570785-13570804 Msa1277780:CDS 35.0%
CTTAGACCAGATATAAAGAG+AGG - chr8_3:13570817-13570836 Msa1277780:CDS 35.0%
AATAGATGGTCACTTATAGC+TGG - chr8_3:13570895-13570914 Msa1277780:intron 35.0%
AATTTACCAAGAACGGATAG+TGG - chr8_3:13571186-13571205 Msa1277780:intron 35.0%
AATAACGTTGTTTGTGAGGT+TGG - chr8_3:13571291-13571310 Msa1277780:intron 35.0%
CAACGTTGAAAGATTAGAGA+TGG - chr8_3:13571359-13571378 Msa1277780:CDS 35.0%
!!! GAGTCATATTTTGACACTTG+TGG - chr8_3:13571387-13571406 Msa1277780:CDS 35.0%
ATACTTGCAACTCTTGAACA+TGG - chr8_3:13571443-13571462 Msa1277780:exon 35.0%
AATCCAACTTTGGCACAACA+AGG + chr8_3:13570213-13570232 None:intergenic 40.0%
ACCTTTGTGCAATCCAACTT+TGG + chr8_3:13570223-13570242 None:intergenic 40.0%
TATGTTCAAGCTCATGGTGA+AGG - chr8_3:13570279-13570298 Msa1277780:CDS 40.0%
CTTATAGCTGGAAGATTACC+AGG - chr8_3:13570907-13570926 Msa1277780:intron 40.0%
ATTTCATTGTCTGTTCGTCC+TGG + chr8_3:13570928-13570947 None:intergenic 40.0%
AATGAACCACTATCCGTTCT+TGG + chr8_3:13571195-13571214 None:intergenic 40.0%
!! ATGGGAGAAAATGACGGATT+TGG - chr8_3:13571318-13571337 Msa1277780:CDS 40.0%
!! TGGGAGAAAATGACGGATTT+GGG - chr8_3:13571319-13571338 Msa1277780:CDS 40.0%
TTTGACACTTGTGGTGATCA+TGG - chr8_3:13571396-13571415 Msa1277780:CDS 40.0%
AATCCAACTTTGGCACAACA+AGG + chr8_3:13570213-13570232 None:intergenic 40.0%
ACCTTTGTGCAATCCAACTT+TGG + chr8_3:13570223-13570242 None:intergenic 40.0%
TATGTTCAAGCTCATGGTGA+AGG - chr8_3:13570279-13570298 Msa1277780:CDS 40.0%
CTTATAGCTGGAAGATTACC+AGG - chr8_3:13570907-13570926 Msa1277780:intron 40.0%
ATTTCATTGTCTGTTCGTCC+TGG + chr8_3:13570928-13570947 None:intergenic 40.0%
AATGAACCACTATCCGTTCT+TGG + chr8_3:13571195-13571214 None:intergenic 40.0%
!! ATGGGAGAAAATGACGGATT+TGG - chr8_3:13571318-13571337 Msa1277780:CDS 40.0%
!! TGGGAGAAAATGACGGATTT+GGG - chr8_3:13571319-13571338 Msa1277780:CDS 40.0%
TTTGACACTTGTGGTGATCA+TGG - chr8_3:13571396-13571415 Msa1277780:CDS 40.0%
GCCAAAGTTGGATTGCACAA+AGG - chr8_3:13570219-13570238 Msa1277780:CDS 45.0%
TTGGATTGCACAAAGGTCCA+TGG - chr8_3:13570226-13570245 Msa1277780:CDS 45.0%
! GCATCTTCTTTGGTAGTCCA+TGG + chr8_3:13570246-13570265 None:intergenic 45.0%
TTGCAGGGCTTCTTAGATGT+GGG - chr8_3:13570764-13570783 Msa1277780:CDS 45.0%
!! TGTTTGTGAGGTTGGTGAGA+TGG - chr8_3:13571299-13571318 Msa1277780:intron 45.0%
!! GTTTGTGAGGTTGGTGAGAT+GGG - chr8_3:13571300-13571319 Msa1277780:intron 45.0%
GGTGAGATGGGAGAAAATGA+CGG - chr8_3:13571312-13571331 Msa1277780:intron 45.0%
GCCAAAGTTGGATTGCACAA+AGG - chr8_3:13570219-13570238 Msa1277780:CDS 45.0%
TTGGATTGCACAAAGGTCCA+TGG - chr8_3:13570226-13570245 Msa1277780:CDS 45.0%
! GCATCTTCTTTGGTAGTCCA+TGG + chr8_3:13570246-13570265 None:intergenic 45.0%
TTGCAGGGCTTCTTAGATGT+GGG - chr8_3:13570764-13570783 Msa1277780:CDS 45.0%
!! TGTTTGTGAGGTTGGTGAGA+TGG - chr8_3:13571299-13571318 Msa1277780:intron 45.0%
!! GTTTGTGAGGTTGGTGAGAT+GGG - chr8_3:13571300-13571319 Msa1277780:intron 45.0%
GGTGAGATGGGAGAAAATGA+CGG - chr8_3:13571312-13571331 Msa1277780:intron 45.0%
!!! TTTTTTATTTTTATTTTTGT+AGG + chr8_3:13570496-13570515 None:intergenic 5.0%
!!! TTTTTTATTTTTATTTTTGT+AGG + chr8_3:13570496-13570515 None:intergenic 5.0%
! GCTCCTTGTTGTGCCAAAGT+TGG - chr8_3:13570207-13570226 Msa1277780:CDS 50.0%
AAGCTCATGGTGAAGGCCAA+TGG - chr8_3:13570286-13570305 Msa1277780:CDS 50.0%
GTTGCAGGGCTTCTTAGATG+TGG - chr8_3:13570763-13570782 Msa1277780:CDS 50.0%
! GCTCCTTGTTGTGCCAAAGT+TGG - chr8_3:13570207-13570226 Msa1277780:CDS 50.0%
AAGCTCATGGTGAAGGCCAA+TGG - chr8_3:13570286-13570305 Msa1277780:CDS 50.0%
GTTGCAGGGCTTCTTAGATG+TGG - chr8_3:13570763-13570782 Msa1277780:CDS 50.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 13570116 13571530 13570116 ID=Msa1277780;Name=Msa1277780
chr8_3 mRNA 13570116 13571530 13570116 ID=Msa1277780-mRNA-1;Parent=Msa1277780;Name=Msa1277780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|0.5|1|1|1|2|0|297
chr8_3 exon 13570116 13570876 13570116 ID=Msa1277780-mRNA-1:exon:5332;Parent=Msa1277780-mRNA-1
chr8_3 exon 13571316 13571530 13571316 ID=Msa1277780-mRNA-1:exon:5331;Parent=Msa1277780-mRNA-1
chr8_3 five_prime_UTR 13571449 13571530 13571449 ID=Msa1277780-mRNA-1:five_prime_utr;Parent=Msa1277780-mRNA-1
chr8_3 CDS 13571316 13571448 13571316 ID=Msa1277780-mRNA-1:cds;Parent=Msa1277780-mRNA-1
chr8_3 CDS 13570116 13570876 13570116 ID=Msa1277780-mRNA-1:cds;Parent=Msa1277780-mRNA-1
Gene Sequence

>Msa1277780

ATGGGAAGAGCTCCTTGTTGTGCCAAAGTTGGATTGCACAAAGGTCCATGGACTACCAAAGAAGATGCATTGCTTACAAAATATGTTCAAGCTCATGGTGAAGGCCAATGGAAATCACTTCCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGTAGACTTAGATGGATGAATTATCTTAGACCAGATATAAAGAGAGGTAACATAACTCCAGAAGAAGATGATCTCATAATAAGATTACATTCACTTCTTGGAAATAGATGGTCACTTATAGCTGGAAGATTACCAGGACGAACAGACAATGAAATAAAGAACTACTGGAACACACATCTCCTTAAAAAGATGCAAAGAAATCAACAAACATGTGATGCTACAACTGATCATGATGAACAAGAACAACCCAAGAAAAAGAACAACAACAAAAAGAAGAAGAGAAACAACAAGGAGAAGAAAAGTGACAAGAAAAAAGGTATAAATAATGATGATCATAAAGAAGAAGAGAAAATCCAAGTTTATTTACCAAAAGCTATTAGAATAAAAGCTTTAAATTTACCAAGAACGGATAGTGGTTCATTTACATATGAATCAAATTCATCAAACGGTAGCCAACAAAAAGAAGAAACACAAAATGTGACAAACAACAATAATAACAATAACGTTGTTTGTGAGGTTGGTGAGATGGGAGAAAATGACGGATTTGGGCATGACTATGACTTAGTCAACGTTGAAAGATTAGAGATGGAATGTGAGTCATATTTTGACACTTGTGGTGATCATGGAACATTAGATAGACTCTATGATGAATACTTGCAACTCTTGAACATGGATGTTTGCAACTACCAGTTTGATTCTTCTTTTGTTGAATCCTTCTTTGATTCAAACAATAATTAA
Protein sequence

>Msa1277780

MGRAPCCAKVGLHKGPWTTKEDALLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLLKKMQRNQQTCDATTDHDEQEQPKKKNNNKKKKRNNKEKKSDKKKGINNDDHKEEEKIQVYLPKAIRIKALNLPRTDSGSFTYESNSSNGSQQKEETQNVTNNNNNNNVVCEVGEMGENDGFGHDYDLVNVERLEMECESYFDTCGDHGTLDRLYDEYLQLLNMDVCNYQFDSSFVESFFDSNNN*