Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685690 | XP_013456329.1 | 98.179 | 659 | 12 | 0 | 1 | 659 | 1 | 659 | 0.0 | 1351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685690 | sp|M4ISH1|CCL6_HUMLU | 73.171 | 656 | 175 | 1 | 5 | 659 | 3 | 658 | 0.0 | 1038 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685690 | A0A072UX04 | 98.179 | 659 | 12 | 0 | 1 | 659 | 1 | 659 | 0.0 | 1351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018220 | Msa0685690 | 0.818846 | 1.583940e-52 | -8.615850e-47 |
| Msa0032840 | Msa0685690 | -0.811114 | 8.230120e-51 | -8.615850e-47 |
| Msa0052020 | Msa0685690 | 0.821891 | 3.172923e-53 | -8.615850e-47 |
| Msa0052460 | Msa0685690 | 0.818171 | 2.252549e-52 | -8.615850e-47 |
| Msa0097050 | Msa0685690 | 0.819486 | 1.132385e-52 | -8.615850e-47 |
| Msa0641620 | Msa0685690 | 0.808941 | 2.418420e-50 | -8.615850e-47 |
| Msa0680150 | Msa0685690 | 0.818224 | 2.191564e-52 | -8.615850e-47 |
| Msa0685690 | Msa0722940 | 0.807157 | 5.796709e-50 | -8.615850e-47 |
| Msa0685690 | Msa0723150 | 0.800742 | 1.249677e-48 | -8.615850e-47 |
| Msa0685690 | Msa0761580 | 0.850561 | 1.568069e-60 | -8.615850e-47 |
| Msa0685690 | Msa0872310 | 0.806208 | 9.196549e-50 | -8.615850e-47 |
| Msa0685690 | Msa0896970 | 0.800374 | 1.485334e-48 | -8.615850e-47 |
| Msa0685690 | Msa0937550 | 0.809237 | 2.089805e-50 | -8.615850e-47 |
| Msa0685690 | Msa0938430 | 0.805629 | 1.217473e-49 | -8.615850e-47 |
| Msa0685690 | Msa1014270 | 0.806820 | 6.832184e-50 | -8.615850e-47 |
| Msa0685690 | Msa1041530 | 0.813489 | 2.494071e-51 | -8.615850e-47 |
| Msa0685690 | Msa1081570 | 0.804393 | 2.207270e-49 | -8.615850e-47 |
| Msa0685690 | Msa1123880 | 0.809129 | 2.203521e-50 | -8.615850e-47 |
| Msa0685690 | Msa1127140 | 0.811141 | 8.120146e-51 | -8.615850e-47 |
| Msa0685690 | Msa1166400 | 0.812312 | 4.517401e-51 | -8.615850e-47 |
| Msa0685690 | Msa1350670 | 0.804091 | 2.550767e-49 | -8.615850e-47 |
| Msa0685690 | Msa1351760 | 0.803316 | 3.694200e-49 | -8.615850e-47 |
| Msa0685690 | Msa1420060 | 0.814438 | 1.540841e-51 | -8.615850e-47 |
| Msa0197230 | Msa0685690 | 0.805673 | 1.191673e-49 | -8.615850e-47 |
| Msa0219190 | Msa0685690 | 0.804042 | 2.611351e-49 | -8.615850e-47 |
| Msa0230550 | Msa0685690 | -0.811029 | 8.588679e-51 | -8.615850e-47 |
| Msa0289890 | Msa0685690 | 0.810892 | 9.196488e-51 | -8.615850e-47 |
| Msa0537270 | Msa0685690 | 0.817606 | 3.023071e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685690 | MtrunA17_Chr4g0034181 | 98.179 | 659 | 12 | 0 | 1 | 659 | 1 | 659 | 0.0 | 1351 |
| Msa0685690 | MtrunA17_Chr1g0162621 | 80.152 | 660 | 129 | 2 | 1 | 658 | 1 | 660 | 0.0 | 1133 |
| Msa0685690 | MtrunA17_Chr5g0396691 | 58.436 | 652 | 269 | 2 | 5 | 654 | 6 | 657 | 0.0 | 815 |
| Msa0685690 | MtrunA17_Chr5g0396711 | 57.669 | 652 | 274 | 2 | 5 | 654 | 6 | 657 | 0.0 | 800 |
| Msa0685690 | MtrunA17_Chr8g0388081 | 59.296 | 597 | 241 | 2 | 61 | 655 | 1 | 597 | 0.0 | 761 |
| Msa0685690 | MtrunA17_Chr1g0194371 | 47.184 | 657 | 340 | 4 | 5 | 656 | 4 | 658 | 0.0 | 633 |
| Msa0685690 | MtrunA17_Chr7g0270221 | 44.306 | 641 | 318 | 2 | 5 | 644 | 4 | 606 | 0.0 | 571 |
| Msa0685690 | MtrunA17_Chr1g0205711 | 42.512 | 621 | 335 | 9 | 38 | 653 | 83 | 686 | 2.98e-162 | 482 |
| Msa0685690 | MtrunA17_Chr3g0120731 | 32.410 | 614 | 377 | 14 | 65 | 651 | 124 | 726 | 9.31e-94 | 305 |
| Msa0685690 | MtrunA17_Chr1g0160041 | 31.796 | 607 | 371 | 14 | 73 | 651 | 103 | 694 | 2.27e-92 | 300 |
| Msa0685690 | MtrunA17_Chr3g0124631 | 30.856 | 619 | 381 | 16 | 65 | 651 | 93 | 696 | 3.06e-88 | 290 |
| Msa0685690 | MtrunA17_Chr3g0121931 | 24.666 | 673 | 407 | 21 | 47 | 652 | 81 | 720 | 2.13e-45 | 172 |
| Msa0685690 | MtrunA17_Chr3g0121951 | 25.599 | 668 | 404 | 23 | 47 | 652 | 79 | 715 | 4.41e-43 | 165 |
| Msa0685690 | MtrunA17_Chr8g0377991 | 25.630 | 675 | 400 | 28 | 47 | 652 | 83 | 724 | 2.29e-37 | 148 |
| Msa0685690 | MtrunA17_Chr2g0327341 | 24.606 | 508 | 269 | 23 | 76 | 561 | 53 | 468 | 5.49e-23 | 103 |
| Msa0685690 | MtrunA17_Chr4g0028411 | 23.035 | 547 | 304 | 22 | 27 | 541 | 3 | 464 | 6.41e-21 | 97.1 |
| Msa0685690 | MtrunA17_Chr1g0180541 | 25.067 | 375 | 205 | 18 | 191 | 546 | 158 | 475 | 4.02e-20 | 94.4 |
| Msa0685690 | MtrunA17_Chr5g0395431 | 24.431 | 483 | 284 | 17 | 79 | 546 | 98 | 514 | 4.63e-20 | 94.4 |
| Msa0685690 | MtrunA17_Chr8g0370701 | 22.989 | 522 | 307 | 18 | 44 | 541 | 57 | 507 | 2.91e-17 | 85.9 |
| Msa0685690 | MtrunA17_Chr4g0000461 | 23.124 | 493 | 282 | 17 | 76 | 546 | 51 | 468 | 6.91e-17 | 84.3 |
| Msa0685690 | MtrunA17_Chr8g0370731 | 23.788 | 433 | 246 | 14 | 132 | 541 | 47 | 418 | 1.69e-16 | 82.8 |
| Msa0685690 | MtrunA17_Chr1g0180551 | 22.156 | 501 | 299 | 19 | 68 | 546 | 117 | 548 | 1.30e-15 | 80.5 |
| Msa0685690 | MtrunA17_Chr3g0116251 | 25.587 | 383 | 219 | 14 | 150 | 519 | 128 | 457 | 1.41e-15 | 80.1 |
| Msa0685690 | MtrunA17_Chr2g0334131 | 32.749 | 171 | 102 | 7 | 384 | 546 | 45 | 210 | 1.47e-14 | 74.7 |
| Msa0685690 | MtrunA17_Chr5g0406681 | 27.513 | 189 | 113 | 6 | 375 | 548 | 318 | 497 | 1.99e-12 | 70.1 |
| Msa0685690 | MtrunA17_Chr2g0301671 | 23.922 | 255 | 181 | 4 | 79 | 325 | 47 | 296 | 1.09e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685690 | AT1G49430.1 | 67.737 | 654 | 207 | 4 | 9 | 658 | 11 | 664 | 0.0 | 955 |
| Msa0685690 | AT1G64400.1 | 54.587 | 654 | 294 | 3 | 5 | 655 | 6 | 659 | 0.0 | 779 |
| Msa0685690 | AT4G23850.1 | 54.923 | 650 | 291 | 2 | 5 | 652 | 7 | 656 | 0.0 | 775 |
| Msa0685690 | AT4G11030.1 | 54.573 | 656 | 296 | 2 | 5 | 658 | 7 | 662 | 0.0 | 766 |
| Msa0685690 | AT1G49430.2 | 66.260 | 492 | 163 | 3 | 9 | 497 | 11 | 502 | 0.0 | 702 |
| Msa0685690 | AT2G47240.1 | 47.933 | 653 | 334 | 3 | 5 | 653 | 4 | 654 | 0.0 | 636 |
| Msa0685690 | AT2G47240.2 | 47.933 | 653 | 334 | 3 | 5 | 653 | 4 | 654 | 0.0 | 636 |
| Msa0685690 | AT2G47240.3 | 47.933 | 653 | 334 | 3 | 5 | 653 | 4 | 654 | 0.0 | 636 |
| Msa0685690 | AT2G47240.4 | 49.246 | 597 | 297 | 3 | 61 | 653 | 1 | 595 | 0.0 | 599 |
| Msa0685690 | AT5G27600.1 | 43.719 | 597 | 321 | 8 | 62 | 653 | 103 | 689 | 1.27e-166 | 494 |
| Msa0685690 | AT3G05970.1 | 44.128 | 596 | 320 | 7 | 62 | 653 | 103 | 689 | 1.85e-165 | 491 |
| Msa0685690 | AT2G04350.2 | 32.201 | 677 | 368 | 18 | 39 | 651 | 70 | 719 | 7.80e-100 | 321 |
| Msa0685690 | AT2G04350.1 | 32.201 | 677 | 368 | 18 | 39 | 651 | 70 | 719 | 7.80e-100 | 321 |
| Msa0685690 | AT1G77590.1 | 32.033 | 615 | 356 | 16 | 73 | 651 | 102 | 690 | 1.90e-93 | 303 |
| Msa0685690 | AT1G77590.2 | 32.394 | 568 | 322 | 16 | 120 | 651 | 3 | 544 | 1.68e-84 | 276 |
| Msa0685690 | AT3G23790.1 | 27.673 | 477 | 283 | 14 | 220 | 652 | 264 | 722 | 7.74e-38 | 150 |
| Msa0685690 | AT4G14070.1 | 23.775 | 694 | 427 | 23 | 19 | 651 | 74 | 726 | 8.02e-37 | 147 |
| Msa0685690 | AT3G21240.2 | 25.520 | 529 | 295 | 24 | 38 | 546 | 32 | 481 | 1.94e-23 | 104 |
| Msa0685690 | AT3G21240.3 | 25.520 | 529 | 295 | 24 | 38 | 546 | 32 | 481 | 1.94e-23 | 104 |
| Msa0685690 | AT3G21240.1 | 25.142 | 529 | 297 | 23 | 38 | 546 | 32 | 481 | 2.37e-23 | 105 |
| Msa0685690 | AT1G51680.3 | 24.956 | 569 | 327 | 22 | 38 | 581 | 34 | 527 | 1.79e-20 | 95.9 |
| Msa0685690 | AT1G51680.1 | 24.767 | 537 | 308 | 20 | 38 | 553 | 34 | 495 | 4.12e-20 | 95.1 |
| Msa0685690 | AT1G51680.2 | 24.906 | 530 | 302 | 20 | 38 | 546 | 34 | 488 | 4.30e-20 | 94.4 |
| Msa0685690 | AT4G05160.1 | 24.670 | 531 | 293 | 23 | 48 | 561 | 33 | 473 | 1.78e-19 | 92.8 |
| Msa0685690 | AT1G65060.1 | 24.416 | 471 | 246 | 21 | 79 | 520 | 77 | 466 | 1.11e-16 | 84.3 |
| Msa0685690 | AT1G65060.2 | 24.468 | 470 | 245 | 21 | 79 | 519 | 77 | 465 | 1.70e-16 | 83.2 |
| Msa0685690 | AT4G19010.1 | 24.826 | 431 | 245 | 13 | 138 | 541 | 106 | 484 | 6.06e-16 | 82.0 |
| Msa0685690 | AT2G47245.1 | 43.421 | 76 | 43 | 0 | 21 | 96 | 53 | 128 | 4.23e-15 | 72.8 |
| Msa0685690 | AT3G21230.1 | 33.742 | 163 | 100 | 7 | 384 | 541 | 331 | 490 | 1.04e-13 | 74.7 |
| Msa0685690 | AT3G21230.2 | 33.742 | 163 | 100 | 7 | 384 | 541 | 331 | 490 | 1.10e-13 | 74.3 |
| Msa0685690 | AT3G21230.3 | 33.742 | 163 | 100 | 7 | 384 | 541 | 331 | 490 | 1.11e-13 | 74.7 |
Find 174 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGGGCCTGTCTTTC+AGG | 0.081617 | 4_4:-49915795 | None:intergenic |
| CCTCACAGAGATAGACTTTA+AGG | 0.129980 | 4_4:+49910812 | Msa0685690:five_prime_UTR |
| TTCACATTATGCATTTATTT+TGG | 0.169315 | 4_4:-49910600 | None:intergenic |
| TCACTTGATACAAATTAAAA+TGG | 0.177953 | 4_4:-49916465 | None:intergenic |
| AGTCACAAAACAACAGAAAA+TGG | 0.198438 | 4_4:+49910644 | Msa0685690:five_prime_UTR |
| AAAGGCAAGAAAATATATTT+TGG | 0.204586 | 4_4:+49915872 | Msa0685690:CDS |
| CCAGGATATTAGATTCTTAA+TGG | 0.210950 | 4_4:+49914086 | Msa0685690:intron |
| TGATTAGCTATTGTGAGTTT+TGG | 0.237148 | 4_4:+49913280 | Msa0685690:intron |
| TGCGCGCAGATTTGGGTCTA+TGG | 0.296060 | 4_4:+49915735 | Msa0685690:intron |
| GGTGACCGTTGTGGCATATA+TGG | 0.296099 | 4_4:+49912523 | Msa0685690:CDS |
| TCCATTGCAATTATCCATTC+AGG | 0.310666 | 4_4:-49912556 | None:intergenic |
| AAGGCGCCTCAATTGGGTTT+TGG | 0.312356 | 4_4:+49913967 | Msa0685690:CDS |
| TCTCCAGGGAAGTCTGGATT+TGG | 0.314714 | 4_4:+49913502 | Msa0685690:intron |
| ATGATAAACTCCACAGCATT+AGG | 0.317381 | 4_4:-49912885 | None:intergenic |
| ATCTACAAAGGCGCCTCAAT+TGG | 0.322969 | 4_4:+49913960 | Msa0685690:CDS |
| TAAATTCCAACATTACGTTT+TGG | 0.326922 | 4_4:-49910711 | None:intergenic |
| TTCTTAATAACAACGCCTTT+TGG | 0.336763 | 4_4:-49913590 | None:intergenic |
| TCTCCTTTGGCACAAGGATA+TGG | 0.337793 | 4_4:+49914740 | Msa0685690:CDS |
| AAGCAGCGCCTTTCTTTGAT+AGG | 0.344372 | 4_4:+49914533 | Msa0685690:CDS |
| CTATAAATTATACTGATATC+TGG | 0.345164 | 4_4:+49916428 | Msa0685690:three_prime_UTR |
| CTCTCCACATCAAAGGGAAT+TGG | 0.349623 | 4_4:-49916062 | None:intergenic |
| GGTCTCACTGAATGTTGTTC+GGG | 0.350765 | 4_4:+49914948 | Msa0685690:intron |
| ACTGAAGAGGTTATGGTTGA+TGG | 0.352245 | 4_4:+49915158 | Msa0685690:CDS |
| GAGTTTCTGAGGGTCACTTT+TGG | 0.356676 | 4_4:+49914716 | Msa0685690:CDS |
| TTCATATGTGATCCATTCAT+AGG | 0.360394 | 4_4:-49912354 | None:intergenic |
| TGAATTTCTCCAGGGAAGTC+TGG | 0.363081 | 4_4:+49913496 | Msa0685690:intron |
| AATTGAGGCGCCTTTGTAGA+TGG | 0.368444 | 4_4:-49913958 | None:intergenic |
| AGATCTTACTGAAGAGGTTA+TGG | 0.369274 | 4_4:+49915151 | Msa0685690:CDS |
| GGATTCAAGCCTTGCTTCAA+TGG | 0.375018 | 4_4:-49915033 | None:intergenic |
| TATGATGCTGCCGTCCGAAT+TGG | 0.380179 | 4_4:+49912383 | Msa0685690:CDS |
| ACAGTTGCTAAAGCACTATA+AGG | 0.391355 | 4_4:+49916121 | Msa0685690:CDS |
| CGGGTTCGAATGTTGTTATC+AGG | 0.393583 | 4_4:+49914665 | Msa0685690:CDS |
| AATTTCTCCACGTGGTTGAC+TGG | 0.395081 | 4_4:-49915084 | None:intergenic |
| TTGGATGAGCTCAATATCAT+TGG | 0.396853 | 4_4:+49915891 | Msa0685690:CDS |
| AAGACAGGCCCTTGAGGATT+GGG | 0.400721 | 4_4:+49915800 | Msa0685690:CDS |
| AATTATCCATTCAGGACAAT+TGG | 0.406058 | 4_4:-49912548 | None:intergenic |
| GATTGCTTTGACAGCAAGTT+GGG | 0.415623 | 4_4:+49914481 | Msa0685690:intron |
| CCTTGCTTCAATGGCTGTCA+TGG | 0.417626 | 4_4:-49915024 | None:intergenic |
| ATCTTGACGCTTGTGGTAAC+CGG | 0.418161 | 4_4:-49915132 | None:intergenic |
| TGACCCAGCATTGGTTTGCT+AGG | 0.419369 | 4_4:-49911337 | None:intergenic |
| TGGAATAGGTCACCATTATC+TGG | 0.422278 | 4_4:-49913938 | None:intergenic |
| GGTCTCTTCAATTTGAATGT+TGG | 0.426846 | 4_4:-49916098 | None:intergenic |
| GTGAATGGCTTACTCAAAAC+AGG | 0.428672 | 4_4:+49910618 | Msa0685690:five_prime_UTR |
| CTGATAGATAAAACAAGCAT+TGG | 0.435144 | 4_4:+49914637 | Msa0685690:intron |
| AGGGAGCAATGGTGTGAGTC+AGG | 0.435357 | 4_4:+49916390 | Msa0685690:exon |
| ATCTTTATGTGGAAATCTAA+AGG | 0.435929 | 4_4:+49915854 | Msa0685690:CDS |
| TGTCTGTTAGAGAAAGCATT+TGG | 0.439284 | 4_4:-49913646 | None:intergenic |
| CCTCAAGGGCCTGTCTTTCA+GGG | 0.440781 | 4_4:-49915794 | None:intergenic |
| AAAGACAGGCCCTTGAGGAT+TGG | 0.441559 | 4_4:+49915799 | Msa0685690:CDS |
| TCCTCATGGCGGATCCAATT+CGG | 0.442563 | 4_4:-49912397 | None:intergenic |
| AGGTCTCACTGAATGTTGTT+CGG | 0.445522 | 4_4:+49914947 | Msa0685690:intron |
| GTGCCCTAGCAAACCAATGC+TGG | 0.447637 | 4_4:+49911333 | Msa0685690:CDS |
| CAGGAGCTGCTCCTTTGTCT+AGG | 0.448283 | 4_4:+49914684 | Msa0685690:CDS |
| TGCTTTCTCTAACAGACAAA+GGG | 0.457253 | 4_4:+49913651 | Msa0685690:CDS |
| GCTGGTAAAAGCAGTTCATC+TGG | 0.457715 | 4_4:+49916037 | Msa0685690:CDS |
| GTTGATGGTTGGTTTCATAC+AGG | 0.462235 | 4_4:+49915173 | Msa0685690:CDS |
| AGAACAAGGTGTTCCCTCTC+AGG | 0.464369 | 4_4:-49915109 | None:intergenic |
| GCAGTGCCCTCTTATAGCTT+CGG | 0.464981 | 4_4:+49915579 | Msa0685690:CDS |
| TTGGTGCATCCTGCTTCTCA+TGG | 0.466724 | 4_4:+49913341 | Msa0685690:CDS |
| GTCACAAAACAACAGAAAAT+GGG | 0.468222 | 4_4:+49910645 | Msa0685690:five_prime_UTR |
| GGCGCCTTTGTAGATGGAAT+AGG | 0.468818 | 4_4:-49913952 | None:intergenic |
| AAAGGCGCTGCTTTGTCTTG+TGG | 0.470688 | 4_4:-49914523 | None:intergenic |
| AGGGATGGTGTTAGCAGAGT+TGG | 0.471302 | 4_4:-49910753 | None:intergenic |
| TCATTTCCAAAACGTAATGT+TGG | 0.471461 | 4_4:+49910705 | Msa0685690:five_prime_UTR |
| CTATGCTAAAGATGGTTTGT+TGG | 0.472097 | 4_4:+49910962 | Msa0685690:CDS |
| TGCAGGCTGGTCCCTATGAA+TGG | 0.473025 | 4_4:+49912342 | Msa0685690:intron |
| AAACATACCGAAGCTATAAG+AGG | 0.476146 | 4_4:-49915586 | None:intergenic |
| AAATAAATGCATAATGTGAA+TGG | 0.477428 | 4_4:+49910603 | Msa0685690:five_prime_UTR |
| AGATCTCTCTCCACATCAAA+GGG | 0.477890 | 4_4:-49916068 | None:intergenic |
| TCTACAAAGGCGCCTCAATT+GGG | 0.481277 | 4_4:+49913961 | Msa0685690:CDS |
| AAGAAAGAAGTTGAGGAACT+TGG | 0.482103 | 4_4:+49913322 | Msa0685690:CDS |
| ATGGATCCAATTGTCCTGAA+TGG | 0.482348 | 4_4:+49912542 | Msa0685690:CDS |
| GCTTGAATCCGTGCCGGAGA+TGG | 0.487293 | 4_4:+49915046 | Msa0685690:CDS |
| AAGTTGGGATATCTAAATAA+TGG | 0.489028 | 4_4:+49914496 | Msa0685690:CDS |
| GGAACGCCACAGAAAATAGT+TGG | 0.489803 | 4_4:-49914129 | None:intergenic |
| AAACCTAGGGTGTCATATAG+TGG | 0.493328 | 4_4:-49912751 | None:intergenic |
| AAACTCTTCCCATGAGAAGC+AGG | 0.493686 | 4_4:-49913350 | None:intergenic |
| TCATGTATATGACCAGATAA+TGG | 0.494422 | 4_4:+49913926 | Msa0685690:CDS |
| AGAGGGAACACCTTGTTCTC+CGG | 0.495484 | 4_4:+49915113 | Msa0685690:CDS |
| CTTGAATCCGTGCCGGAGAT+GGG | 0.506106 | 4_4:+49915047 | Msa0685690:CDS |
| AGAGAAGTACACATCGTCTT+CGG | 0.511003 | 4_4:-49913889 | None:intergenic |
| AGTTGTGATCCCTGAAAGAC+AGG | 0.511172 | 4_4:+49915785 | Msa0685690:CDS |
| ATGTACACAAGTGGAACTAC+TGG | 0.514736 | 4_4:+49913563 | Msa0685690:CDS |
| CAGTAAGATCTTGACGCTTG+TGG | 0.515457 | 4_4:-49915139 | None:intergenic |
| AAAACAAGCATTGGGTGGAC+GGG | 0.519110 | 4_4:+49914646 | Msa0685690:CDS |
| ATTGGAGAATGGCTGCCAAA+TGG | 0.524066 | 4_4:+49915466 | Msa0685690:CDS |
| ATGGGAAGAGTTTCTTCAGT+TGG | 0.524380 | 4_4:+49913360 | Msa0685690:CDS |
| GACCCAGCATTGGTTTGCTA+GGG | 0.526702 | 4_4:-49911336 | None:intergenic |
| AAAATCATTACAGGTGACAT+TGG | 0.527671 | 4_4:+49915448 | Msa0685690:intron |
| TGATAGATAAAACAAGCATT+GGG | 0.531712 | 4_4:+49914638 | Msa0685690:intron |
| CCCTGAAAGACAGGCCCTTG+AGG | 0.532809 | 4_4:+49915794 | Msa0685690:CDS |
| TAGATCTCTCTCCACATCAA+AGG | 0.534676 | 4_4:-49916069 | None:intergenic |
| AGATTGCTTTGACAGCAAGT+TGG | 0.536219 | 4_4:+49914480 | Msa0685690:intron |
| AGATGCATCTATGCTAAAGA+TGG | 0.539890 | 4_4:+49910954 | Msa0685690:CDS |
| CTTGCTTCAATGGCTGTCAT+GGG | 0.543159 | 4_4:-49915023 | None:intergenic |
| AATAACAAAATTTCATCAGA+AGG | 0.544297 | 4_4:+49914340 | Msa0685690:CDS |
| GCTTCACTGCCCAATCCTCA+AGG | 0.545815 | 4_4:-49915809 | None:intergenic |
| GGAACTACTGGTGAACCAAA+AGG | 0.548158 | 4_4:+49913575 | Msa0685690:CDS |
| AACACAAGCCTATCAAAGAA+AGG | 0.551578 | 4_4:-49914541 | None:intergenic |
| ATACCATATCCTTGTGCCAA+AGG | 0.551717 | 4_4:-49914743 | None:intergenic |
| TAAAACAAGCATTGGGTGGA+CGG | 0.552014 | 4_4:+49914645 | Msa0685690:CDS |
| AGTGCATCATATCCCATCTC+CGG | 0.553360 | 4_4:-49915059 | None:intergenic |
| CAACTATACAAGGAAGCAAA+GGG | 0.554406 | 4_4:+49916371 | Msa0685690:CDS |
| TCATATGTGATCCATTCATA+GGG | 0.559220 | 4_4:-49912353 | None:intergenic |
| TAGAGAAAGCATTTGGTCAA+CGG | 0.562498 | 4_4:-49913639 | None:intergenic |
| AACATCTTCAAATTGTCTCA+AGG | 0.563185 | 4_4:+49915517 | Msa0685690:CDS |
| ATGCTTTCTCTAACAGACAA+AGG | 0.563403 | 4_4:+49913650 | Msa0685690:CDS |
| TGGTGCATCCTGCTTCTCAT+GGG | 0.565803 | 4_4:+49913342 | Msa0685690:CDS |
| GCGTCAAGATCTTACTGAAG+AGG | 0.568382 | 4_4:+49915145 | Msa0685690:CDS |
| GGAACCAATTCCCTTTGATG+TGG | 0.569636 | 4_4:+49916058 | Msa0685690:CDS |
| TTTGGATCTCCTTTGGCACA+AGG | 0.570755 | 4_4:+49914734 | Msa0685690:CDS |
| TGCCCTAGCAAACCAATGCT+GGG | 0.572632 | 4_4:+49911334 | Msa0685690:CDS |
| TGCACAATCATGTACACAAG+TGG | 0.574438 | 4_4:+49913554 | Msa0685690:CDS |
| CTCAGGCAAATTTCTCCACG+TGG | 0.575376 | 4_4:-49915092 | None:intergenic |
| ATTGACGCCACGGCTCCTCA+TGG | 0.575810 | 4_4:-49912411 | None:intergenic |
| TGAGTGAATTTAACAAGGGA+TGG | 0.576326 | 4_4:-49910768 | None:intergenic |
| TCAACTATACAAGGAAGCAA+AGG | 0.578184 | 4_4:+49916370 | Msa0685690:CDS |
| CCATGACAGCCATTGAAGCA+AGG | 0.580357 | 4_4:+49915024 | Msa0685690:CDS |
| TCAGCTATGATGAACAAATG+AGG | 0.583805 | 4_4:-49910845 | None:intergenic |
| CAAGGAAGCAAAGGGAGCAA+TGG | 0.584744 | 4_4:+49916379 | Msa0685690:CDS |
| AGCAAGGCTTGAATCCGTGC+CGG | 0.585755 | 4_4:+49915040 | Msa0685690:CDS |
| AAGAGGTTATGGTTGATGGT+TGG | 0.585803 | 4_4:+49915162 | Msa0685690:CDS |
| CACACAAAAGAAAGAAGTTG+AGG | 0.586579 | 4_4:+49913315 | Msa0685690:CDS |
| GTGGAGAAATTTGCCTGAGA+GGG | 0.588140 | 4_4:+49915096 | Msa0685690:CDS |
| TGTGCAGGGACTCTGCAGCA+AGG | 0.589063 | 4_4:+49911311 | Msa0685690:intron |
| CATATACATGAGCAAGAGGA+AGG | 0.589152 | 4_4:-49913914 | None:intergenic |
| TATCACAAGGGTGACCGTTG+TGG | 0.589606 | 4_4:+49912514 | Msa0685690:intron |
| AACATACCGAAGCTATAAGA+GGG | 0.589933 | 4_4:-49915585 | None:intergenic |
| AGATATGAGTGAATTTAACA+AGG | 0.590858 | 4_4:-49910773 | None:intergenic |
| TTGTATTGATCAACTATACA+AGG | 0.593056 | 4_4:+49916361 | Msa0685690:CDS |
| ATCATATCCCATCTCCGGCA+CGG | 0.593835 | 4_4:-49915054 | None:intergenic |
| CATGGAGATTGAAAATGAGA+AGG | 0.594076 | 4_4:-49910990 | None:intergenic |
| CTATACACAGGACCTGCTGA+TGG | 0.594226 | 4_4:-49910933 | None:intergenic |
| GGCACGTAGAAGAGTTTCTG+AGG | 0.595393 | 4_4:+49914705 | Msa0685690:CDS |
| TTACAGGTGACATTGGAGAA+TGG | 0.595467 | 4_4:+49915455 | Msa0685690:intron |
| TCCTGAATGGATAATTGCAA+TGG | 0.596918 | 4_4:+49912555 | Msa0685690:CDS |
| GCAAAAGAACAGTAGTTGCA+AGG | 0.598691 | 4_4:-49916615 | None:intergenic |
| GCCTTGCCAAAACCCAATTG+AGG | 0.600652 | 4_4:-49913973 | None:intergenic |
| GGATGTATACACTGTGAAAG+TGG | 0.600967 | 4_4:+49910881 | Msa0685690:CDS |
| GTGTGAGTCAGGTGGCATGC+AGG | 0.601130 | 4_4:+49916401 | Msa0685690:exon |
| TGGTCATATACATGAGCAAG+AGG | 0.603137 | 4_4:-49913918 | None:intergenic |
| TGAATGGATAATTGCAATGG+AGG | 0.604812 | 4_4:+49912558 | Msa0685690:CDS |
| GGATCCGCCATGAGGAGCCG+TGG | 0.606979 | 4_4:+49912404 | Msa0685690:CDS |
| CTTCACTGCCCAATCCTCAA+GGG | 0.607450 | 4_4:-49915808 | None:intergenic |
| GATATGAGTGAATTTAACAA+GGG | 0.611716 | 4_4:-49910772 | None:intergenic |
| GTTTACGATCGTGTTTACGC+TGG | 0.611797 | 4_4:+49914156 | Msa0685690:CDS |
| TGATAGGCTTGTGTTTGACA+AGG | 0.613130 | 4_4:+49914549 | Msa0685690:CDS |
| GCAAACCAATGCTGGGTCAG+CGG | 0.613487 | 4_4:+49911341 | Msa0685690:CDS |
| CTTGTGGTAACCGGAGAACA+AGG | 0.614733 | 4_4:-49915123 | None:intergenic |
| CAGTTACAGGATTGACGCCA+CGG | 0.620559 | 4_4:-49912421 | None:intergenic |
| CGTGGAGAAATTTGCCTGAG+AGG | 0.624184 | 4_4:+49915095 | Msa0685690:CDS |
| GCTCCACTATATGACACCCT+AGG | 0.626773 | 4_4:+49912748 | Msa0685690:CDS |
| TGAATGGATCACATATGAAG+AGG | 0.627275 | 4_4:+49912358 | Msa0685690:CDS |
| TTATAGTGCTTTAGCAACTG+TGG | 0.630502 | 4_4:-49916119 | None:intergenic |
| GGTGTTAGCAGAGTTGGTTG+AGG | 0.634357 | 4_4:-49910747 | None:intergenic |
| TAGATAAAACAAGCATTGGG+TGG | 0.647577 | 4_4:+49914641 | Msa0685690:intron |
| TCTTCTACGTGCCTAGACAA+AGG | 0.651689 | 4_4:-49914695 | None:intergenic |
| GAGCAATGGTGTGAGTCAGG+TGG | 0.652429 | 4_4:+49916393 | Msa0685690:exon |
| GTGACCTATTCCATCTACAA+AGG | 0.655175 | 4_4:+49913948 | Msa0685690:CDS |
| GACGCCACGGCTCCTCATGG+CGG | 0.655853 | 4_4:-49912408 | None:intergenic |
| GCATAGATGCATCTATACAC+AGG | 0.659280 | 4_4:-49910945 | None:intergenic |
| GTCTCACTGAATGTTGTTCG+GGG | 0.665474 | 4_4:+49914949 | Msa0685690:CDS |
| ATAGCTGAGAATCACAATGG+TGG | 0.666565 | 4_4:+49910860 | Msa0685690:exon |
| ATGCTATAGAAACTTCAGCA+TGG | 0.672567 | 4_4:-49912911 | None:intergenic |
| GCTTTCTCTAACAGACAAAG+GGG | 0.673416 | 4_4:+49913652 | Msa0685690:CDS |
| CATGGCGGATCCAATTCGGA+CGG | 0.676326 | 4_4:-49912393 | None:intergenic |
| TCCGAATTGGATCCGCCATG+AGG | 0.676397 | 4_4:+49912396 | Msa0685690:CDS |
| ATCATAGCTGAGAATCACAA+TGG | 0.683018 | 4_4:+49910857 | Msa0685690:exon |
| TAAACACGATCGTAAACTCG+AGG | 0.686356 | 4_4:-49914150 | None:intergenic |
| GCACGTAGAAGAGTTTCTGA+GGG | 0.686603 | 4_4:+49914706 | Msa0685690:CDS |
| TGGATCCATATATGCCACAA+CGG | 0.694452 | 4_4:-49912528 | None:intergenic |
| ATAAACAGGACCTAATGCTG+TGG | 0.706682 | 4_4:+49912875 | Msa0685690:intron |
| CCTTAAAGTCTATCTCTGTG+AGG | 0.707527 | 4_4:-49910812 | None:intergenic |
| GCACTCTCCAGTCAACCACG+TGG | 0.730635 | 4_4:+49915077 | Msa0685690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAAAAATTAAAAAG+TGG | + | chr4_4:49911153-49911172 | Msa0685690:intron | 10.0% |
| !! | ATCAAAATAAGTTTATAATT+AGG | + | chr4_4:49911751-49911770 | Msa0685690:intron | 10.0% |
| !! | TCAAAATAAGTTTATAATTA+GGG | + | chr4_4:49911752-49911771 | Msa0685690:intron | 10.0% |
| !!! | AATATAACTATTTTTCTTAG+AGG | - | chr4_4:49910686-49910705 | None:intergenic | 15.0% |
| !!! | ATTTGTTACTAAATTTACTT+TGG | + | chr4_4:49911413-49911432 | Msa0685690:intron | 15.0% |
| !!! | AAAGTAAGTAAATGAAATTT+TGG | - | chr4_4:49911562-49911581 | None:intergenic | 15.0% |
| !!! | AATTTCATTTACTTACTTTT+AGG | + | chr4_4:49911563-49911582 | Msa0685690:intron | 15.0% |
| !! | ATTAGTTATTATTTCACAAA+AGG | - | chr4_4:49911680-49911699 | None:intergenic | 15.0% |
| !!! | TTTTGTGAAATAATAACTAA+TGG | + | chr4_4:49911679-49911698 | Msa0685690:intron | 15.0% |
| !! | ATTGATTAACACATTAATAA+TGG | + | chr4_4:49912218-49912237 | Msa0685690:intron | 15.0% |
| !! | ATTTGTCATAAATTCTATAT+GGG | - | chr4_4:49912245-49912264 | None:intergenic | 15.0% |
| !! | TATTTGTCATAAATTCTATA+TGG | - | chr4_4:49912246-49912265 | None:intergenic | 15.0% |
| !! | GTTATAAATATGATATGATT+TGG | + | chr4_4:49912642-49912661 | Msa0685690:intron | 15.0% |
| !! | TTATCTTCAAAATATTCAAT+GGG | - | chr4_4:49913061-49913080 | None:intergenic | 15.0% |
| !! | ATTATCTTCAAAATATTCAA+TGG | - | chr4_4:49913062-49913081 | None:intergenic | 15.0% |
| !! | ACAAATGAAATAATTAATGA+AGG | - | chr4_4:49913736-49913755 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTATTTATAAGTG+TGG | + | chr4_4:49913755-49913774 | Msa0685690:intron | 15.0% |
| !!! | TTTTCTTTATTTATAAGTGT+GGG | + | chr4_4:49913756-49913775 | Msa0685690:intron | 15.0% |
| !! | TTCAAATTTATCTTCATTAT+TGG | + | chr4_4:49916202-49916221 | Msa0685690:intron | 15.0% |
| !!! | ATCTTATTTTGTAATCTTAT+AGG | - | chr4_4:49916559-49916578 | None:intergenic | 15.0% |
| !!! | TTCACATTATGCATTTATTT+TGG | - | chr4_4:49910603-49910622 | None:intergenic | 20.0% |
| !! | AAATAAATGCATAATGTGAA+TGG | + | chr4_4:49910603-49910622 | Msa0685690:five_prime_UTR | 20.0% |
| !! | AAAGTTTCATGATCTATATT+GGG | + | chr4_4:49911083-49911102 | Msa0685690:intron | 20.0% |
| !! | AACATGTTTAACATACTAAA+TGG | - | chr4_4:49912625-49912644 | None:intergenic | 20.0% |
| !!! | TCTTTTATTCCATCTTTTAA+TGG | + | chr4_4:49913227-49913246 | Msa0685690:intron | 20.0% |
| !!! | ATTTTATCACAGAAGTTAAT+TGG | - | chr4_4:49913260-49913279 | None:intergenic | 20.0% |
| !!! | ATGTTAGTCTTATTTTTCAA+TGG | - | chr4_4:49913533-49913552 | None:intergenic | 20.0% |
| !! | AATAACAAAATTTCATCAGA+AGG | + | chr4_4:49914340-49914359 | Msa0685690:CDS | 20.0% |
| !! | CAATAGGATAGAAATTATAA+AGG | - | chr4_4:49914446-49914465 | None:intergenic | 20.0% |
| !!! | GAATCTTTTGTTAAATATAG+AGG | + | chr4_4:49914778-49914797 | Msa0685690:intron | 20.0% |
| !!! | TATCATCAAAATGATAATGA+TGG | - | chr4_4:49914926-49914945 | None:intergenic | 20.0% |
| !! | AGTAGATATGTTTGAATTAA+CGG | + | chr4_4:49915215-49915234 | Msa0685690:intron | 20.0% |
| !!! | ATTTGAAGATGTTCTTTTTT+CGG | - | chr4_4:49915510-49915529 | None:intergenic | 20.0% |
| !! | ATAAAAACTTCGTACATTAA+TGG | - | chr4_4:49915713-49915732 | None:intergenic | 20.0% |
| !!! | GATGATTTTAAATCTTTATG+TGG | + | chr4_4:49915843-49915862 | Msa0685690:CDS | 20.0% |
| !!! | AAAGGCAAGAAAATATATTT+TGG | + | chr4_4:49915872-49915891 | Msa0685690:CDS | 20.0% |
| !! | GTAATCACTAAGATAAAAAA+AGG | - | chr4_4:49915979-49915998 | None:intergenic | 20.0% |
| !!! | TAGCAAAAAAATGCATATTT+TGG | - | chr4_4:49916268-49916287 | None:intergenic | 20.0% |
| !! | CTATAAATTATACTGATATC+TGG | + | chr4_4:49916428-49916447 | Msa0685690:three_prime_UTR | 20.0% |
| !!! | TTAAAATGGATTCTGAAAAA+CGG | - | chr4_4:49916454-49916473 | None:intergenic | 20.0% |
| !! | TCACTTGATACAAATTAAAA+TGG | - | chr4_4:49916468-49916487 | None:intergenic | 20.0% |
| !!! | TTGAAAAGCTATATATTTTC+TGG | + | chr4_4:49916591-49916610 | Msa0685690:three_prime_UTR | 20.0% |
| !!! | ATTATGCATTTATTTTGGCT+GGG | - | chr4_4:49910598-49910617 | None:intergenic | 25.0% |
| !! | TAAATTCCAACATTACGTTT+TGG | - | chr4_4:49910714-49910733 | None:intergenic | 25.0% |
| ! | GATATGAGTGAATTTAACAA+GGG | - | chr4_4:49910775-49910794 | None:intergenic | 25.0% |
| ! | AGATATGAGTGAATTTAACA+AGG | - | chr4_4:49910776-49910795 | None:intergenic | 25.0% |
| ! | CAAAGTTTCATGATCTATAT+TGG | + | chr4_4:49911082-49911101 | Msa0685690:intron | 25.0% |
| ! | GTACAAAGAACATTAGAAAA+CGG | - | chr4_4:49911121-49911140 | None:intergenic | 25.0% |
| ! | CAAATCGAAAGATTAACAAA+TGG | - | chr4_4:49911248-49911267 | None:intergenic | 25.0% |
| ! | TACTATTGTGTTACATTTGT+TGG | + | chr4_4:49912004-49912023 | Msa0685690:intron | 25.0% |
| !!! | ATTCAACACAAAACTGATTT+TGG | - | chr4_4:49912291-49912310 | None:intergenic | 25.0% |
| ! | AAGAATTCAATTGAATTTGC+AGG | + | chr4_4:49912325-49912344 | Msa0685690:intron | 25.0% |
| ! | ATAGTATAGTCTGTTAATAG+AGG | - | chr4_4:49912452-49912471 | None:intergenic | 25.0% |
| !! | TTGCTGAATTGATTCAAATT+TGG | + | chr4_4:49912689-49912708 | Msa0685690:intron | 25.0% |
| ! | AAGTTTATTGAGACTGATAA+AGG | - | chr4_4:49912793-49912812 | None:intergenic | 25.0% |
| ! | TCATGTATTTATGCATAAAC+AGG | + | chr4_4:49912861-49912880 | Msa0685690:intron | 25.0% |
| ! | AATAGAATGAAACTTACAGA+AGG | - | chr4_4:49912957-49912976 | None:intergenic | 25.0% |
| !! | GTAAGTTTCATTCTATTTCT+TGG | + | chr4_4:49912960-49912979 | Msa0685690:intron | 25.0% |
| ! | AAAATCTGTGGAAACAAAAA+AGG | - | chr4_4:49913137-49913156 | None:intergenic | 25.0% |
| ! | AGTAACAAAAGAACATAGAA+AGG | - | chr4_4:49913202-49913221 | None:intergenic | 25.0% |
| !! | TCTATGTTCTTTTGTTACTA+AGG | + | chr4_4:49913203-49913222 | Msa0685690:intron | 25.0% |
| ! | ACATGCTATGTACTATTTAT+AGG | + | chr4_4:49913863-49913882 | Msa0685690:intron | 25.0% |
| ! | TCATTCTTAATAGTAATTCC+TGG | + | chr4_4:49914015-49914034 | Msa0685690:intron | 25.0% |
| ! | GCTTAGGACATTATTAAATA+AGG | - | chr4_4:49914237-49914256 | None:intergenic | 25.0% |
| ! | TTAGGATAAATTCAATGCTT+AGG | - | chr4_4:49914253-49914272 | None:intergenic | 25.0% |
| ! | ATCAGAAGGATCAATAAAAA+AGG | + | chr4_4:49914354-49914373 | Msa0685690:CDS | 25.0% |
| ! | CTAGATTAGTAGTATACAAT+AGG | - | chr4_4:49914462-49914481 | None:intergenic | 25.0% |
| ! | AAGTTGGGATATCTAAATAA+TGG | + | chr4_4:49914496-49914515 | Msa0685690:CDS | 25.0% |
| ! | TGATAGATAAAACAAGCATT+GGG | + | chr4_4:49914638-49914657 | Msa0685690:intron | 25.0% |
| !! | TCTTTTGTTAAATATAGAGG+TGG | + | chr4_4:49914781-49914800 | Msa0685690:intron | 25.0% |
| !!! | GTTTCACTTTTTTATTCTCA+AGG | + | chr4_4:49914868-49914887 | Msa0685690:intron | 25.0% |
| !!! | CATTATCATTTTGATGATAC+AGG | + | chr4_4:49914927-49914946 | Msa0685690:intron | 25.0% |
| !! | ATCTAATGTGTTTTCTATGA+TGG | + | chr4_4:49914986-49915005 | Msa0685690:CDS | 25.0% |
| !! | TCTAATGTGTTTTCTATGAT+GGG | + | chr4_4:49914987-49915006 | Msa0685690:CDS | 25.0% |
| !!! | ATGCTTTGAAAAATCATTAC+AGG | + | chr4_4:49915439-49915458 | Msa0685690:intron | 25.0% |
| !!! | AAATAGTTTTGAGTCTTTCT+TGG | + | chr4_4:49915758-49915777 | Msa0685690:CDS | 25.0% |
| ! | ATCTTTATGTGGAAATCTAA+AGG | + | chr4_4:49915854-49915873 | Msa0685690:CDS | 25.0% |
| ! | AATATCAGAAATTAAGCACA+TGG | - | chr4_4:49915950-49915969 | None:intergenic | 25.0% |
| !! | TTGTATTGATCAACTATACA+AGG | + | chr4_4:49916361-49916380 | Msa0685690:CDS | 25.0% |
| !!! | TTATGCATTTATTTTGGCTG+GGG | - | chr4_4:49910597-49910616 | None:intergenic | 30.0% |
| !!! | CATTATGCATTTATTTTGGC+TGG | - | chr4_4:49910599-49910618 | None:intergenic | 30.0% |
| AGTCACAAAACAACAGAAAA+TGG | + | chr4_4:49910644-49910663 | Msa0685690:five_prime_UTR | 30.0% | |
| GTCACAAAACAACAGAAAAT+GGG | + | chr4_4:49910645-49910664 | Msa0685690:five_prime_UTR | 30.0% | |
| TCATTTCCAAAACGTAATGT+TGG | + | chr4_4:49910705-49910724 | Msa0685690:five_prime_UTR | 30.0% | |
| ! | TTCTCATTTTCAATCTCCAT+GGG | + | chr4_4:49910992-49911011 | Msa0685690:CDS | 30.0% |
| AGAAGAACCATCAAAATCAA+AGG | - | chr4_4:49911290-49911309 | None:intergenic | 30.0% | |
| ATGTAAAGAAAAGTAGTGCA+AGG | + | chr4_4:49911907-49911926 | Msa0685690:intron | 30.0% | |
| !! | TGAACACTAACATTTGTTGT+TGG | + | chr4_4:49911973-49911992 | Msa0685690:intron | 30.0% |
| CAACAAATGTTCTTTCGAAA+GGG | - | chr4_4:49912050-49912069 | None:intergenic | 30.0% | |
| TCATATGTGATCCATTCATA+GGG | - | chr4_4:49912356-49912375 | None:intergenic | 30.0% | |
| TTCATATGTGATCCATTCAT+AGG | - | chr4_4:49912357-49912376 | None:intergenic | 30.0% | |
| TAGTGTTTCTTGTATCACAA+GGG | + | chr4_4:49912502-49912521 | Msa0685690:intron | 30.0% | |
| AATTATCCATTCAGGACAAT+TGG | - | chr4_4:49912551-49912570 | None:intergenic | 30.0% | |
| TATAGCACTCTATCTTTGTA+GGG | + | chr4_4:49912581-49912600 | Msa0685690:intron | 30.0% | |
| TATTGAGACTGATAAAGGAA+AGG | - | chr4_4:49912788-49912807 | None:intergenic | 30.0% | |
| GTTCTTCATTATTGTTTCCT+TGG | + | chr4_4:49913004-49913023 | Msa0685690:intron | 30.0% | |
| !! | TGATTAGCTATTGTGAGTTT+TGG | + | chr4_4:49913280-49913299 | Msa0685690:intron | 30.0% |
| !! | GATTAGCTATTGTGAGTTTT+GGG | + | chr4_4:49913281-49913300 | Msa0685690:intron | 30.0% |
| ! | TTCTTAATAACAACGCCTTT+TGG | - | chr4_4:49913593-49913612 | None:intergenic | 30.0% |
| ATGAAACAAGTGAATCATAG+AGG | - | chr4_4:49913693-49913712 | None:intergenic | 30.0% | |
| TCATGTATATGACCAGATAA+TGG | + | chr4_4:49913926-49913945 | Msa0685690:CDS | 30.0% | |
| !! | CTCTAAAAGTATTTCCTTCA+TGG | + | chr4_4:49914044-49914063 | Msa0685690:intron | 30.0% |
| TCAACACAAAAATTCCATGA+AGG | - | chr4_4:49914061-49914080 | None:intergenic | 30.0% | |
| !!! | ATTTTTGTGTTGATTCTTCC+AGG | + | chr4_4:49914068-49914087 | Msa0685690:intron | 30.0% |
| CCATTAAGAATCTAATATCC+TGG | - | chr4_4:49914089-49914108 | None:intergenic | 30.0% | |
| CCAGGATATTAGATTCTTAA+TGG | + | chr4_4:49914086-49914105 | Msa0685690:intron | 30.0% | |
| TACAACAAGATTATAGCAGT+AGG | - | chr4_4:49914210-49914229 | None:intergenic | 30.0% | |
| TATTACAGAAGACAGTTCAA+TGG | - | chr4_4:49914415-49914434 | None:intergenic | 30.0% | |
| CTGATAGATAAAACAAGCAT+TGG | + | chr4_4:49914637-49914656 | Msa0685690:intron | 30.0% | |
| TTATCATGTAACCACTTCAA+TGG | - | chr4_4:49914902-49914921 | None:intergenic | 30.0% | |
| CAAAAAAGCGGAAAGATATA+AGG | - | chr4_4:49915255-49915274 | None:intergenic | 30.0% | |
| ! | TGTAGTTTGCCTATAAATGT+CGG | + | chr4_4:49915406-49915425 | Msa0685690:intron | 30.0% |
| AAAATCATTACAGGTGACAT+TGG | + | chr4_4:49915448-49915467 | Msa0685690:intron | 30.0% | |
| ! | ATAATTTTCATGGCTCCATT+TGG | - | chr4_4:49915484-49915503 | None:intergenic | 30.0% |
| ! | TTTTCGGTCGATAATTTTCA+TGG | - | chr4_4:49915494-49915513 | None:intergenic | 30.0% |
| AACATCTTCAAATTGTCTCA+AGG | + | chr4_4:49915517-49915536 | Msa0685690:CDS | 30.0% | |
| ! | AAGGTTTGTTTCTTATTCTC+TGG | + | chr4_4:49916140-49916159 | Msa0685690:intron | 30.0% |
| CAATACAATCCTGAAATTGT+TGG | - | chr4_4:49916349-49916368 | None:intergenic | 30.0% | |
| TGAGTGAATTTAACAAGGGA+TGG | - | chr4_4:49910771-49910790 | None:intergenic | 35.0% | |
| TCAGCTATGATGAACAAATG+AGG | - | chr4_4:49910848-49910867 | None:intergenic | 35.0% | |
| ATCATAGCTGAGAATCACAA+TGG | + | chr4_4:49910857-49910876 | Msa0685690:exon | 35.0% | |
| AGATGCATCTATGCTAAAGA+TGG | + | chr4_4:49910954-49910973 | Msa0685690:CDS | 35.0% | |
| ! | CTATGCTAAAGATGGTTTGT+TGG | + | chr4_4:49910962-49910981 | Msa0685690:CDS | 35.0% |
| CATGGAGATTGAAAATGAGA+AGG | - | chr4_4:49910993-49911012 | None:intergenic | 35.0% | |
| ! | CTTCTCATTTTCAATCTCCA+TGG | + | chr4_4:49910991-49911010 | Msa0685690:CDS | 35.0% |
| !!! | AATCTCCATGGGATTTTTTC+AGG | + | chr4_4:49911003-49911022 | Msa0685690:CDS | 35.0% |
| ! | CATTAGAAAACGGATTTCAC+TGG | - | chr4_4:49911111-49911130 | None:intergenic | 35.0% |
| ! | GCGGAAAAAAACTGATTCAA+AGG | + | chr4_4:49911360-49911379 | Msa0685690:CDS | 35.0% |
| ! | TTTTGACACAAGCAATCTCA+AGG | + | chr4_4:49911847-49911866 | Msa0685690:intron | 35.0% |
| AAAGAAAAGTAGTGCAAGGA+AGG | + | chr4_4:49911911-49911930 | Msa0685690:intron | 35.0% | |
| CCAACAAATGTTCTTTCGAA+AGG | - | chr4_4:49912051-49912070 | None:intergenic | 35.0% | |
| CCTTTCGAAAGAACATTTGT+TGG | + | chr4_4:49912048-49912067 | Msa0685690:intron | 35.0% | |
| !! | CAACACAAAACTGATTTTGG+TGG | - | chr4_4:49912288-49912307 | None:intergenic | 35.0% |
| ATTCAATTGAATTTGCAGGC+TGG | + | chr4_4:49912329-49912348 | Msa0685690:intron | 35.0% | |
| TGAATGGATCACATATGAAG+AGG | + | chr4_4:49912358-49912377 | Msa0685690:CDS | 35.0% | |
| AATAGAGGAAGAACAGTTAC+AGG | - | chr4_4:49912437-49912456 | None:intergenic | 35.0% | |
| CTAGTGTTTCTTGTATCACA+AGG | + | chr4_4:49912501-49912520 | Msa0685690:intron | 35.0% | |
| TCCTGAATGGATAATTGCAA+TGG | + | chr4_4:49912555-49912574 | Msa0685690:CDS | 35.0% | |
| TCCATTGCAATTATCCATTC+AGG | - | chr4_4:49912559-49912578 | None:intergenic | 35.0% | |
| TGAATGGATAATTGCAATGG+AGG | + | chr4_4:49912558-49912577 | Msa0685690:CDS | 35.0% | |
| GTATAGCACTCTATCTTTGT+AGG | + | chr4_4:49912580-49912599 | Msa0685690:intron | 35.0% | |
| !! | GATTCAAATTTGGTGTTTGC+AGG | + | chr4_4:49912699-49912718 | Msa0685690:intron | 35.0% |
| GGTACAAAAACACAAACCTA+GGG | - | chr4_4:49912767-49912786 | None:intergenic | 35.0% | |
| AGGTACAAAAACACAAACCT+AGG | - | chr4_4:49912768-49912787 | None:intergenic | 35.0% | |
| ATGATAAACTCCACAGCATT+AGG | - | chr4_4:49912888-49912907 | None:intergenic | 35.0% | |
| ATGCTATAGAAACTTCAGCA+TGG | - | chr4_4:49912914-49912933 | None:intergenic | 35.0% | |
| ! | GAGCACAATCTTTTACATTC+TGG | + | chr4_4:49912982-49913001 | Msa0685690:intron | 35.0% |
| TAACATAAGATTGTGCTCCA+AGG | - | chr4_4:49913024-49913043 | None:intergenic | 35.0% | |
| CTGCTGAAAGATGTCTAAAA+TGG | - | chr4_4:49913092-49913111 | None:intergenic | 35.0% | |
| TCAAGACATGACAAAATCTG+TGG | - | chr4_4:49913149-49913168 | None:intergenic | 35.0% | |
| ! | AGATTTTGTCATGTCTTGAG+CGG | + | chr4_4:49913150-49913169 | Msa0685690:intron | 35.0% |
| GGTGTACACATCTTAAAAGT+AGG | + | chr4_4:49913171-49913190 | Msa0685690:intron | 35.0% | |
| ! | CTCAACTTCTTTCTTTTGTG+TGG | - | chr4_4:49913317-49913336 | None:intergenic | 35.0% |
| CACACAAAAGAAAGAAGTTG+AGG | + | chr4_4:49913315-49913334 | Msa0685690:CDS | 35.0% | |
| AAGAAAGAAGTTGAGGAACT+TGG | + | chr4_4:49913322-49913341 | Msa0685690:CDS | 35.0% | |
| ! | TTGGTAGGAACTCTGATTTT+CGG | + | chr4_4:49913379-49913398 | Msa0685690:intron | 35.0% |
| ATGAACCACTGTGATCAAAT+AGG | + | chr4_4:49913437-49913456 | Msa0685690:intron | 35.0% | |
| TCTTGTATCTGAATTTCTCC+AGG | + | chr4_4:49913487-49913506 | Msa0685690:intron | 35.0% | |
| CTTGTATCTGAATTTCTCCA+GGG | + | chr4_4:49913488-49913507 | Msa0685690:intron | 35.0% | |
| !! | TAGAGAAAGCATTTGGTCAA+CGG | - | chr4_4:49913642-49913661 | None:intergenic | 35.0% |
| !! | TGTCTGTTAGAGAAAGCATT+TGG | - | chr4_4:49913649-49913668 | None:intergenic | 35.0% |
| ATGCTTTCTCTAACAGACAA+AGG | + | chr4_4:49913650-49913669 | Msa0685690:CDS | 35.0% | |
| TGCTTTCTCTAACAGACAAA+GGG | + | chr4_4:49913651-49913670 | Msa0685690:CDS | 35.0% | |
| !! | ATACTTTTAGAGATTGAGCC+AGG | - | chr4_4:49914036-49914055 | None:intergenic | 35.0% |
| ! | CTGAAACCAACTATTTTCTG+TGG | + | chr4_4:49914123-49914142 | Msa0685690:CDS | 35.0% |
| GTAGTCACACAATCAGATTT+AGG | - | chr4_4:49914271-49914290 | None:intergenic | 35.0% | |
| !! | TAAGCTTAACTTGCACTTGA+AGG | + | chr4_4:49914313-49914332 | Msa0685690:intron | 35.0% |
| AACACAAGCCTATCAAAGAA+AGG | - | chr4_4:49914544-49914563 | None:intergenic | 35.0% | |
| CTAAAAGTCGAAATCACAAG+TGG | - | chr4_4:49914579-49914598 | None:intergenic | 35.0% | |
| !! | TAGATAAAACAAGCATTGGG+TGG | + | chr4_4:49914641-49914660 | Msa0685690:intron | 35.0% |
| ACTGTTGTAGCATGATGATT+TGG | + | chr4_4:49914846-49914865 | Msa0685690:intron | 35.0% | |
| !! | TGTGTTTTCTATGATGGGAA+CGG | + | chr4_4:49914992-49915011 | Msa0685690:CDS | 35.0% |
| AGATCTTACTGAAGAGGTTA+TGG | + | chr4_4:49915151-49915170 | Msa0685690:CDS | 35.0% | |
| AGAGAGAGAGAACAAAAAAG+CGG | - | chr4_4:49915267-49915286 | None:intergenic | 35.0% | |
| ! | GTAGTTTGCCTATAAATGTC+GGG | + | chr4_4:49915407-49915426 | Msa0685690:intron | 35.0% |
| CTAAAACACCCGACATTTAT+AGG | - | chr4_4:49915418-49915437 | None:intergenic | 35.0% | |
| AACATACCGAAGCTATAAGA+GGG | - | chr4_4:49915588-49915607 | None:intergenic | 35.0% | |
| AAACATACCGAAGCTATAAG+AGG | - | chr4_4:49915589-49915608 | None:intergenic | 35.0% | |
| !!! | TTTTATTTTGCGCGCAGATT+TGG | + | chr4_4:49915727-49915746 | Msa0685690:intron | 35.0% |
| !!! | TTTATTTTGCGCGCAGATTT+GGG | + | chr4_4:49915728-49915747 | Msa0685690:intron | 35.0% |
| !!! | TAGTTTTGAGTCTTTCTTGG+TGG | + | chr4_4:49915761-49915780 | Msa0685690:CDS | 35.0% |
| TTGGATGAGCTCAATATCAT+TGG | + | chr4_4:49915891-49915910 | Msa0685690:CDS | 35.0% | |
| ATCAGAAATTAAGCACATGG+TGG | - | chr4_4:49915947-49915966 | None:intergenic | 35.0% | |
| !! | GATTGATTTTCTCAGCTTAG+AGG | + | chr4_4:49916008-49916027 | Msa0685690:intron | 35.0% |
| GGTCTCTTCAATTTGAATGT+TGG | - | chr4_4:49916101-49916120 | None:intergenic | 35.0% | |
| TTATAGTGCTTTAGCAACTG+TGG | - | chr4_4:49916122-49916141 | None:intergenic | 35.0% | |
| ! | ACAGTTGCTAAAGCACTATA+AGG | + | chr4_4:49916121-49916140 | Msa0685690:CDS | 35.0% |
| TCAACTATACAAGGAAGCAA+AGG | + | chr4_4:49916370-49916389 | Msa0685690:CDS | 35.0% | |
| CAACTATACAAGGAAGCAAA+GGG | + | chr4_4:49916371-49916390 | Msa0685690:CDS | 35.0% | |
| !!! | TTATTTTGGCTGGGGAAGTT+TGG | - | chr4_4:49910589-49910608 | None:intergenic | 40.0% |
| GTGAATGGCTTACTCAAAAC+AGG | + | chr4_4:49910618-49910637 | Msa0685690:five_prime_UTR | 40.0% | |
| CCTTAAAGTCTATCTCTGTG+AGG | - | chr4_4:49910815-49910834 | None:intergenic | 40.0% | |
| CCTCACAGAGATAGACTTTA+AGG | + | chr4_4:49910812-49910831 | Msa0685690:five_prime_UTR | 40.0% | |
| ATAGCTGAGAATCACAATGG+TGG | + | chr4_4:49910860-49910879 | Msa0685690:exon | 40.0% | |
| GGATGTATACACTGTGAAAG+TGG | + | chr4_4:49910881-49910900 | Msa0685690:CDS | 40.0% | |
| !! | GATGGTTTTTCATGACTTGC+TGG | - | chr4_4:49910918-49910937 | None:intergenic | 40.0% |
| AGTCATGAAAAACCATCAGC+AGG | + | chr4_4:49910921-49910940 | Msa0685690:CDS | 40.0% | |
| GCATAGATGCATCTATACAC+AGG | - | chr4_4:49910948-49910967 | None:intergenic | 40.0% | |
| CAGTACCTGAAAAAATCCCA+TGG | - | chr4_4:49911011-49911030 | None:intergenic | 40.0% | |
| AATTAAAAAGTGGCCCATGC+AGG | + | chr4_4:49911163-49911182 | Msa0685690:intron | 40.0% | |
| CTCTAACCAACTGAGCTAAT+GGG | + | chr4_4:49911222-49911241 | Msa0685690:intron | 40.0% | |
| !! | CGTGAAGCCTTTGATTTTGA+TGG | + | chr4_4:49911280-49911299 | Msa0685690:intron | 40.0% |
| ! | TTGATGGTTCTTCTTTGTGC+AGG | + | chr4_4:49911296-49911315 | Msa0685690:intron | 40.0% |
| TGATGGTTCTTCTTTGTGCA+GGG | + | chr4_4:49911297-49911316 | Msa0685690:intron | 40.0% | |
| !!! | AAACTGATTTTGGTGGTGGT+GGG | - | chr4_4:49912281-49912300 | None:intergenic | 40.0% |
| !!! | AAAACTGATTTTGGTGGTGG+TGG | - | chr4_4:49912282-49912301 | None:intergenic | 40.0% |
| !! | CACAAAACTGATTTTGGTGG+TGG | - | chr4_4:49912285-49912304 | None:intergenic | 40.0% |
| TGGATCCATATATGCCACAA+CGG | - | chr4_4:49912531-49912550 | None:intergenic | 40.0% | |
| ATGGATCCAATTGTCCTGAA+TGG | + | chr4_4:49912542-49912561 | Msa0685690:CDS | 40.0% | |
| ! | AAACCTAGGGTGTCATATAG+TGG | - | chr4_4:49912754-49912773 | None:intergenic | 40.0% |
| ATAAACAGGACCTAATGCTG+TGG | + | chr4_4:49912875-49912894 | Msa0685690:intron | 40.0% | |
| ! | GGTTAGCTGCCATTAAAAGA+TGG | - | chr4_4:49913239-49913258 | None:intergenic | 40.0% |
| ATGGGAAGAGTTTCTTCAGT+TGG | + | chr4_4:49913360-49913379 | Msa0685690:CDS | 40.0% | |
| GAAGAGTTTCTTCAGTTGGT+AGG | + | chr4_4:49913364-49913383 | Msa0685690:intron | 40.0% | |
| ! | TAGGAACTCTGATTTTCGGT+TGG | + | chr4_4:49913383-49913402 | Msa0685690:intron | 40.0% |
| AATCGCCTATTTGATCACAG+TGG | - | chr4_4:49913445-49913464 | None:intergenic | 40.0% | |
| TGCACAATCATGTACACAAG+TGG | + | chr4_4:49913554-49913573 | Msa0685690:CDS | 40.0% | |
| ATGTACACAAGTGGAACTAC+TGG | + | chr4_4:49913563-49913582 | Msa0685690:CDS | 40.0% | |
| GCTTTCTCTAACAGACAAAG+GGG | + | chr4_4:49913652-49913671 | Msa0685690:CDS | 40.0% | |
| ! | AGAGAAGTACACATCGTCTT+CGG | - | chr4_4:49913892-49913911 | None:intergenic | 40.0% |
| CATATACATGAGCAAGAGGA+AGG | - | chr4_4:49913917-49913936 | None:intergenic | 40.0% | |
| TGGTCATATACATGAGCAAG+AGG | - | chr4_4:49913921-49913940 | None:intergenic | 40.0% | |
| TGGAATAGGTCACCATTATC+TGG | - | chr4_4:49913941-49913960 | None:intergenic | 40.0% | |
| GTGACCTATTCCATCTACAA+AGG | + | chr4_4:49913948-49913967 | Msa0685690:CDS | 40.0% | |
| TAAACACGATCGTAAACTCG+AGG | - | chr4_4:49914153-49914172 | None:intergenic | 40.0% | |
| AGATTGCTTTGACAGCAAGT+TGG | + | chr4_4:49914480-49914499 | Msa0685690:intron | 40.0% | |
| GATTGCTTTGACAGCAAGTT+GGG | + | chr4_4:49914481-49914500 | Msa0685690:intron | 40.0% | |
| TGATAGGCTTGTGTTTGACA+AGG | + | chr4_4:49914549-49914568 | Msa0685690:CDS | 40.0% | |
| !! | TAAAACAAGCATTGGGTGGA+CGG | + | chr4_4:49914645-49914664 | Msa0685690:CDS | 40.0% |
| ATACCATATCCTTGTGCCAA+AGG | - | chr4_4:49914746-49914765 | None:intergenic | 40.0% | |
| ! | AGGAGTGTATTCCATTGAAG+TGG | + | chr4_4:49914888-49914907 | Msa0685690:intron | 40.0% |
| AGGTCTCACTGAATGTTGTT+CGG | + | chr4_4:49914947-49914966 | Msa0685690:intron | 40.0% | |
| !! | TTTTCTATGATGGGAACGGT+TGG | + | chr4_4:49914996-49915015 | Msa0685690:CDS | 40.0% |
| ACTGAAGAGGTTATGGTTGA+TGG | + | chr4_4:49915158-49915177 | Msa0685690:CDS | 40.0% | |
| !! | AAGAGGTTATGGTTGATGGT+TGG | + | chr4_4:49915162-49915181 | Msa0685690:CDS | 40.0% |
| !! | GTTGATGGTTGGTTTCATAC+AGG | + | chr4_4:49915173-49915192 | Msa0685690:CDS | 40.0% |
| TTACAGGTGACATTGGAGAA+TGG | + | chr4_4:49915455-49915474 | Msa0685690:intron | 40.0% | |
| AGATCTCTCTCCACATCAAA+GGG | - | chr4_4:49916071-49916090 | None:intergenic | 40.0% | |
| TAGATCTCTCTCCACATCAA+AGG | - | chr4_4:49916072-49916091 | None:intergenic | 40.0% | |
| ! | TTTTCCTCGCCAACAATTTC+AGG | + | chr4_4:49916337-49916356 | Msa0685690:intron | 40.0% |
| GCTCTAACCAACTGAGCTAA+TGG | + | chr4_4:49911221-49911240 | Msa0685690:intron | 45.0% | |
| AAATGGCCCATTAGCTCAGT+TGG | - | chr4_4:49911231-49911250 | None:intergenic | 45.0% | |
| ! | TAGTGCAAGGAAGGAGTGTA+AGG | + | chr4_4:49911920-49911939 | Msa0685690:intron | 45.0% |
| ! | AGTGCAAGGAAGGAGTGTAA+GGG | + | chr4_4:49911921-49911940 | Msa0685690:intron | 45.0% |
| !!! | AACTGATTTTGGTGGTGGTG+GGG | - | chr4_4:49912280-49912299 | None:intergenic | 45.0% |
| AAACTCTTCCCATGAGAAGC+AGG | - | chr4_4:49913353-49913372 | None:intergenic | 45.0% | |
| TGAATTTCTCCAGGGAAGTC+TGG | + | chr4_4:49913496-49913515 | Msa0685690:intron | 45.0% | |
| GGAACTACTGGTGAACCAAA+AGG | + | chr4_4:49913575-49913594 | Msa0685690:CDS | 45.0% | |
| ! | AATTGAGGCGCCTTTGTAGA+TGG | - | chr4_4:49913961-49913980 | None:intergenic | 45.0% |
| !! | ATCTACAAAGGCGCCTCAAT+TGG | + | chr4_4:49913960-49913979 | Msa0685690:CDS | 45.0% |
| !! | TCTACAAAGGCGCCTCAATT+GGG | + | chr4_4:49913961-49913980 | Msa0685690:CDS | 45.0% |
| GGAACGCCACAGAAAATAGT+TGG | - | chr4_4:49914132-49914151 | None:intergenic | 45.0% | |
| GTTTACGATCGTGTTTACGC+TGG | + | chr4_4:49914156-49914175 | Msa0685690:CDS | 45.0% | |
| AAGCAGCGCCTTTCTTTGAT+AGG | + | chr4_4:49914533-49914552 | Msa0685690:CDS | 45.0% | |
| !! | AAAACAAGCATTGGGTGGAC+GGG | + | chr4_4:49914646-49914665 | Msa0685690:CDS | 45.0% |
| CGGGTTCGAATGTTGTTATC+AGG | + | chr4_4:49914665-49914684 | Msa0685690:CDS | 45.0% | |
| TCTTCTACGTGCCTAGACAA+AGG | - | chr4_4:49914698-49914717 | None:intergenic | 45.0% | |
| GCACGTAGAAGAGTTTCTGA+GGG | + | chr4_4:49914706-49914725 | Msa0685690:CDS | 45.0% | |
| !! | GAGTTTCTGAGGGTCACTTT+TGG | + | chr4_4:49914716-49914735 | Msa0685690:CDS | 45.0% |
| !!! | GGTCACTTTTGGATCTCCTT+TGG | + | chr4_4:49914727-49914746 | Msa0685690:CDS | 45.0% |
| TTTGGATCTCCTTTGGCACA+AGG | + | chr4_4:49914734-49914753 | Msa0685690:CDS | 45.0% | |
| TCTCCTTTGGCACAAGGATA+TGG | + | chr4_4:49914740-49914759 | Msa0685690:CDS | 45.0% | |
| GGTCTCACTGAATGTTGTTC+GGG | + | chr4_4:49914948-49914967 | Msa0685690:intron | 45.0% | |
| GTCTCACTGAATGTTGTTCG+GGG | + | chr4_4:49914949-49914968 | Msa0685690:CDS | 45.0% | |
| CTTGCTTCAATGGCTGTCAT+GGG | - | chr4_4:49915026-49915045 | None:intergenic | 45.0% | |
| GGATTCAAGCCTTGCTTCAA+TGG | - | chr4_4:49915036-49915055 | None:intergenic | 45.0% | |
| AGTGCATCATATCCCATCTC+CGG | - | chr4_4:49915062-49915081 | None:intergenic | 45.0% | |
| AATTTCTCCACGTGGTTGAC+TGG | - | chr4_4:49915087-49915106 | None:intergenic | 45.0% | |
| GTGGAGAAATTTGCCTGAGA+GGG | + | chr4_4:49915096-49915115 | Msa0685690:CDS | 45.0% | |
| ATCTTGACGCTTGTGGTAAC+CGG | - | chr4_4:49915135-49915154 | None:intergenic | 45.0% | |
| CAGTAAGATCTTGACGCTTG+TGG | - | chr4_4:49915142-49915161 | None:intergenic | 45.0% | |
| GCGTCAAGATCTTACTGAAG+AGG | + | chr4_4:49915145-49915164 | Msa0685690:CDS | 45.0% | |
| ATTGGAGAATGGCTGCCAAA+TGG | + | chr4_4:49915466-49915485 | Msa0685690:CDS | 45.0% | |
| AGTTGTGATCCCTGAAAGAC+AGG | + | chr4_4:49915785-49915804 | Msa0685690:CDS | 45.0% | |
| !!! | TCAGCTTAGAGGTTTTGAGC+TGG | + | chr4_4:49916019-49916038 | Msa0685690:intron | 45.0% |
| GCTGGTAAAAGCAGTTCATC+TGG | + | chr4_4:49916037-49916056 | Msa0685690:CDS | 45.0% | |
| GGAACCAATTCCCTTTGATG+TGG | + | chr4_4:49916058-49916077 | Msa0685690:CDS | 45.0% | |
| CTCTCCACATCAAAGGGAAT+TGG | - | chr4_4:49916065-49916084 | None:intergenic | 45.0% | |
| CAATCCTGAAATTGTTGGCG+AGG | - | chr4_4:49916344-49916363 | None:intergenic | 45.0% | |
| !!! | AAAATTAATTTACTATTTTT+TGG | - | chr4_4:49911601-49911620 | None:intergenic | 5.0% |
| ! | GGTGTTAGCAGAGTTGGTTG+AGG | - | chr4_4:49910750-49910769 | None:intergenic | 50.0% |
| ! | AGGGATGGTGTTAGCAGAGT+TGG | - | chr4_4:49910756-49910775 | None:intergenic | 50.0% |
| CTATACACAGGACCTGCTGA+TGG | - | chr4_4:49910936-49910955 | None:intergenic | 50.0% | |
| TGCCCTAGCAAACCAATGCT+GGG | + | chr4_4:49911334-49911353 | Msa0685690:CDS | 50.0% | |
| !! | GACCCAGCATTGGTTTGCTA+GGG | - | chr4_4:49911339-49911358 | None:intergenic | 50.0% |
| !! | TGACCCAGCATTGGTTTGCT+AGG | - | chr4_4:49911340-49911359 | None:intergenic | 50.0% |
| ! | TTTTTCCGCTGACCCAGCAT+TGG | - | chr4_4:49911349-49911368 | None:intergenic | 50.0% |
| !!! | ACTGATTTTGGTGGTGGTGG+GGG | - | chr4_4:49912279-49912298 | None:intergenic | 50.0% |
| TATGATGCTGCCGTCCGAAT+TGG | + | chr4_4:49912383-49912402 | Msa0685690:CDS | 50.0% | |
| !! | TCCTCATGGCGGATCCAATT+CGG | - | chr4_4:49912400-49912419 | None:intergenic | 50.0% |
| CAGTTACAGGATTGACGCCA+CGG | - | chr4_4:49912424-49912443 | None:intergenic | 50.0% | |
| TATCACAAGGGTGACCGTTG+TGG | + | chr4_4:49912514-49912533 | Msa0685690:intron | 50.0% | |
| GGTGACCGTTGTGGCATATA+TGG | + | chr4_4:49912523-49912542 | Msa0685690:CDS | 50.0% | |
| GCTCCACTATATGACACCCT+AGG | + | chr4_4:49912748-49912767 | Msa0685690:CDS | 50.0% | |
| TTGGTGCATCCTGCTTCTCA+TGG | + | chr4_4:49913341-49913360 | Msa0685690:CDS | 50.0% | |
| TGGTGCATCCTGCTTCTCAT+GGG | + | chr4_4:49913342-49913361 | Msa0685690:CDS | 50.0% | |
| TCTCCAGGGAAGTCTGGATT+TGG | + | chr4_4:49913502-49913521 | Msa0685690:intron | 50.0% | |
| GATCCAAATCCAGACTTCCC+TGG | - | chr4_4:49913508-49913527 | None:intergenic | 50.0% | |
| GGCGCCTTTGTAGATGGAAT+AGG | - | chr4_4:49913955-49913974 | None:intergenic | 50.0% | |
| !! | AAGGCGCCTCAATTGGGTTT+TGG | + | chr4_4:49913967-49913986 | Msa0685690:CDS | 50.0% |
| !! | GCCTCAATTGGGTTTTGGCA+AGG | + | chr4_4:49913972-49913991 | Msa0685690:CDS | 50.0% |
| GCCTTGCCAAAACCCAATTG+AGG | - | chr4_4:49913976-49913995 | None:intergenic | 50.0% | |
| CGATCGTGTTTACGCTGGTA+AGG | + | chr4_4:49914161-49914180 | Msa0685690:intron | 50.0% | |
| !! | AAAGGCGCTGCTTTGTCTTG+TGG | - | chr4_4:49914526-49914545 | None:intergenic | 50.0% |
| GGCACGTAGAAGAGTTTCTG+AGG | + | chr4_4:49914705-49914724 | Msa0685690:CDS | 50.0% | |
| CCTTGCTTCAATGGCTGTCA+TGG | - | chr4_4:49915027-49915046 | None:intergenic | 50.0% | |
| CCATGACAGCCATTGAAGCA+AGG | + | chr4_4:49915024-49915043 | Msa0685690:CDS | 50.0% | |
| ATCATATCCCATCTCCGGCA+CGG | - | chr4_4:49915057-49915076 | None:intergenic | 50.0% | |
| CTCAGGCAAATTTCTCCACG+TGG | - | chr4_4:49915095-49915114 | None:intergenic | 50.0% | |
| CGTGGAGAAATTTGCCTGAG+AGG | + | chr4_4:49915095-49915114 | Msa0685690:CDS | 50.0% | |
| ! | AGAACAAGGTGTTCCCTCTC+AGG | - | chr4_4:49915112-49915131 | None:intergenic | 50.0% |
| AGAGGGAACACCTTGTTCTC+CGG | + | chr4_4:49915113-49915132 | Msa0685690:CDS | 50.0% | |
| CTTGTGGTAACCGGAGAACA+AGG | - | chr4_4:49915126-49915145 | None:intergenic | 50.0% | |
| AAAGACAGGCCCTTGAGGAT+TGG | + | chr4_4:49915799-49915818 | Msa0685690:CDS | 50.0% | |
| AAGACAGGCCCTTGAGGATT+GGG | + | chr4_4:49915800-49915819 | Msa0685690:CDS | 50.0% | |
| CTTCACTGCCCAATCCTCAA+GGG | - | chr4_4:49915811-49915830 | None:intergenic | 50.0% | |
| CAAGGAAGCAAAGGGAGCAA+TGG | + | chr4_4:49916379-49916398 | Msa0685690:CDS | 50.0% | |
| CGCAGGTTCGAAACCTGCAT+GGG | - | chr4_4:49911179-49911198 | None:intergenic | 55.0% | |
| TCGCAGGTTCGAAACCTGCA+TGG | - | chr4_4:49911180-49911199 | None:intergenic | 55.0% | |
| GCTAATAACGCGAAGGTCGC+AGG | - | chr4_4:49911196-49911215 | None:intergenic | 55.0% | |
| GCGTCGTGCTAATAACGCGA+AGG | - | chr4_4:49911203-49911222 | None:intergenic | 55.0% | |
| GTGCCCTAGCAAACCAATGC+TGG | + | chr4_4:49911333-49911352 | Msa0685690:CDS | 55.0% | |
| GCAAACCAATGCTGGGTCAG+CGG | + | chr4_4:49911341-49911360 | Msa0685690:CDS | 55.0% | |
| !! | TTTGGTGGTGGTGGGGGTAT+GGG | - | chr4_4:49912273-49912292 | None:intergenic | 55.0% |
| !!! | TTTTGGTGGTGGTGGGGGTA+TGG | - | chr4_4:49912274-49912293 | None:intergenic | 55.0% |
| ! | TGCAGGCTGGTCCCTATGAA+TGG | + | chr4_4:49912342-49912361 | Msa0685690:intron | 55.0% |
| !! | CATGGCGGATCCAATTCGGA+CGG | - | chr4_4:49912396-49912415 | None:intergenic | 55.0% |
| TCCGAATTGGATCCGCCATG+AGG | + | chr4_4:49912396-49912415 | Msa0685690:CDS | 55.0% | |
| CAGGAGCTGCTCCTTTGTCT+AGG | + | chr4_4:49914684-49914703 | Msa0685690:CDS | 55.0% | |
| AGCAAGGCTTGAATCCGTGC+CGG | + | chr4_4:49915040-49915059 | Msa0685690:CDS | 55.0% | |
| CTTGAATCCGTGCCGGAGAT+GGG | + | chr4_4:49915047-49915066 | Msa0685690:CDS | 55.0% | |
| TGCGCGCAGATTTGGGTCTA+TGG | + | chr4_4:49915735-49915754 | Msa0685690:intron | 55.0% | |
| CCTCAAGGGCCTGTCTTTCA+GGG | - | chr4_4:49915797-49915816 | None:intergenic | 55.0% | |
| TCCTCAAGGGCCTGTCTTTC+AGG | - | chr4_4:49915798-49915817 | None:intergenic | 55.0% | |
| GCTTCACTGCCCAATCCTCA+AGG | - | chr4_4:49915812-49915831 | None:intergenic | 55.0% | |
| AGGGAGCAATGGTGTGAGTC+AGG | + | chr4_4:49916390-49916409 | Msa0685690:exon | 55.0% | |
| GAGCAATGGTGTGAGTCAGG+TGG | + | chr4_4:49916393-49916412 | Msa0685690:exon | 55.0% | |
| TGTGCAGGGACTCTGCAGCA+AGG | + | chr4_4:49911311-49911330 | Msa0685690:intron | 60.0% | |
| !! | TTGGTGGTGGTGGGGGTATG+GGG | - | chr4_4:49912272-49912291 | None:intergenic | 60.0% |
| ATTGACGCCACGGCTCCTCA+TGG | - | chr4_4:49912414-49912433 | None:intergenic | 60.0% | |
| GCTTGAATCCGTGCCGGAGA+TGG | + | chr4_4:49915046-49915065 | Msa0685690:CDS | 60.0% | |
| GCACTCTCCAGTCAACCACG+TGG | + | chr4_4:49915077-49915096 | Msa0685690:CDS | 60.0% | |
| CCCTGAAAGACAGGCCCTTG+AGG | + | chr4_4:49915794-49915813 | Msa0685690:CDS | 60.0% | |
| GTGTGAGTCAGGTGGCATGC+AGG | + | chr4_4:49916401-49916420 | Msa0685690:exon | 60.0% | |
| !! | TGGTGGTGGTGGGGGTATGG+GGG | - | chr4_4:49912271-49912290 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGGGGTATGGG+GGG | - | chr4_4:49912270-49912289 | None:intergenic | 70.0% |
| GGATCCGCCATGAGGAGCCG+TGG | + | chr4_4:49912404-49912423 | Msa0685690:CDS | 70.0% | |
| GACGCCACGGCTCCTCATGG+CGG | - | chr4_4:49912411-49912430 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49910585 | 49916633 | 49910585 | ID=Msa0685690;Name=Msa0685690 |
| chr4_4 | mRNA | 49910585 | 49916633 | 49910585 | ID=Msa0685690-mRNA-1;Parent=Msa0685690;Name=Msa0685690-mRNA-1;_AED=0.16;_eAED=0.16;_QI=291|1|1|1|0.88|0.89|19|227|659 |
| chr4_4 | exon | 49910585 | 49911024 | 49910585 | ID=Msa0685690-mRNA-1:exon:12616;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49911318 | 49911381 | 49911318 | ID=Msa0685690-mRNA-1:exon:12617;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49912347 | 49912436 | 49912347 | ID=Msa0685690-mRNA-1:exon:12618;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49912523 | 49912579 | 49912523 | ID=Msa0685690-mRNA-1:exon:12619;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49912721 | 49912769 | 49912721 | ID=Msa0685690-mRNA-1:exon:12620;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49912883 | 49912959 | 49912883 | ID=Msa0685690-mRNA-1:exon:12621;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49913152 | 49913188 | 49913152 | ID=Msa0685690-mRNA-1:exon:12622;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49913287 | 49913381 | 49913287 | ID=Msa0685690-mRNA-1:exon:12623;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49913509 | 49913673 | 49913509 | ID=Msa0685690-mRNA-1:exon:12624;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49913885 | 49913995 | 49913885 | ID=Msa0685690-mRNA-1:exon:12625;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49914090 | 49914177 | 49914090 | ID=Msa0685690-mRNA-1:exon:12626;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49914335 | 49914401 | 49914335 | ID=Msa0685690-mRNA-1:exon:12627;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49914495 | 49914570 | 49914495 | ID=Msa0685690-mRNA-1:exon:12628;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49914644 | 49914761 | 49914644 | ID=Msa0685690-mRNA-1:exon:12629;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49914949 | 49915194 | 49914949 | ID=Msa0685690-mRNA-1:exon:12630;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49915461 | 49915600 | 49915461 | ID=Msa0685690-mRNA-1:exon:12631;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49915744 | 49915926 | 49915744 | ID=Msa0685690-mRNA-1:exon:12632;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49916023 | 49916142 | 49916023 | ID=Msa0685690-mRNA-1:exon:12633;Parent=Msa0685690-mRNA-1 |
| chr4_4 | exon | 49916359 | 49916633 | 49916359 | ID=Msa0685690-mRNA-1:exon:12634;Parent=Msa0685690-mRNA-1 |
| chr4_4 | five_prime_UTR | 49910585 | 49910875 | 49910585 | ID=Msa0685690-mRNA-1:five_prime_utr;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49910876 | 49911024 | 49910876 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49911318 | 49911381 | 49911318 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49912347 | 49912436 | 49912347 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49912523 | 49912579 | 49912523 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49912721 | 49912769 | 49912721 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49912883 | 49912959 | 49912883 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49913152 | 49913188 | 49913152 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49913287 | 49913381 | 49913287 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49913509 | 49913673 | 49913509 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49913885 | 49913995 | 49913885 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49914090 | 49914177 | 49914090 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49914335 | 49914401 | 49914335 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49914495 | 49914570 | 49914495 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49914644 | 49914761 | 49914644 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49914949 | 49915194 | 49914949 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49915461 | 49915600 | 49915461 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49915744 | 49915926 | 49915744 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49916023 | 49916142 | 49916023 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | CDS | 49916359 | 49916406 | 49916359 | ID=Msa0685690-mRNA-1:cds;Parent=Msa0685690-mRNA-1 |
| chr4_4 | three_prime_UTR | 49916407 | 49916633 | 49916407 | ID=Msa0685690-mRNA-1:three_prime_utr;Parent=Msa0685690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
