AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0052020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052020 MtrunA17_Chr1g0152981 87.188 320 26 2 1 306 1 319 0.0 570
Msa0052020 MtrunA17_Chr5g0413871 42.735 234 95 8 11 212 13 239 4.29e-54 180
Msa0052020 MtrunA17_Chr2g0317011 36.041 197 87 8 12 190 20 195 7.88e-25 103
Msa0052020 MtrunA17_Chr1g0184231 30.645 186 75 9 12 181 5 152 9.68e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052020 AT1G60060.1 42.723 213 83 7 11 191 13 218 8.60e-51 172
Msa0052020 AT1G60060.2 39.205 176 72 6 48 191 6 178 3.03e-33 125
Msa0052020 AT3G15240.2 35.025 197 94 7 12 190 34 214 5.57e-26 106
Msa0052020 AT5G53900.2 34.000 200 94 7 12 190 21 203 1.83e-23 99.4
Msa0052020 AT1G06150.2 30.055 183 90 6 12 184 5 159 2.01e-12 68.2
Msa0052020 AT1G06150.1 30.055 183 90 6 12 184 5 159 2.16e-12 68.2
Msa0052020 AT2G31280.3 30.978 184 90 9 8 185 1 153 2.77e-12 67.8
Msa0052020 AT2G31280.1 30.978 184 90 9 8 185 1 153 2.90e-12 67.8

Find 91 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCATCATTTGGAAATT+TGG 0.071257 1_2:+6208671 None:intergenic
ATGATTTAAACCTAAGTTTA+TGG 0.157867 1_2:+6208571 None:intergenic
GTGTTATTTGTTTAGGAATT+AGG 0.179358 1_2:+6208374 None:intergenic
ACATTTCATATTGCTAATTA+TGG 0.183731 1_2:-6208423 Msa0052020:CDS
CTTCATTGCTTTCCATCATT+TGG 0.227927 1_2:+6208663 None:intergenic
TTACAATAGTGTTCACATTT+TGG 0.247362 1_2:-6210924 Msa0052020:five_prime_UTR
ATCTTGCATGTTATTAAGTT+TGG 0.269651 1_2:+6208622 None:intergenic
TCCAAGGGAAATAAAGAAAT+TGG 0.273529 1_2:-6210546 Msa0052020:CDS
TGTTGTTTAAGGTGGGAATT+TGG 0.274976 1_2:-6210588 Msa0052020:intron
ACAACTAGTGTTATTTGTTT+AGG 0.284914 1_2:+6208367 None:intergenic
CCCTCTTCAATTTCACTTTG+TGG 0.285088 1_2:+6208447 None:intergenic
ATGTGAACACTATTGTAAAA+TGG 0.307117 1_2:+6210929 None:intergenic
GCTAATTATGGAGATCAAAA+AGG 0.316814 1_2:-6208411 Msa0052020:CDS
GTTTATAGTGACACTCAAAA+TGG 0.326390 1_2:-6210074 Msa0052020:CDS
ACCAATTTCTTTATTTCCCT+TGG 0.331578 1_2:+6210545 None:intergenic
TCTCATGAGGTTTATAGTTA+TGG 0.339420 1_2:-6210274 Msa0052020:CDS
GGATGCTTGAATGAAAGATT+TGG 0.362727 1_2:-6210319 Msa0052020:CDS
TGTTTGTTAGGATTATTGTA+TGG 0.365430 1_2:-6210387 Msa0052020:intron
ACCTAAGTTTATGGCTATCA+TGG 0.369497 1_2:+6208580 None:intergenic
CATCATTTGGAAATTTGGTT+TGG 0.377261 1_2:+6208676 None:intergenic
CAAACCAAATTTCCAAATGA+TGG 0.379754 1_2:-6208675 Msa0052020:CDS
TTCAACTTCATGAAACAAAT+AGG 0.381434 1_2:-6208484 Msa0052020:CDS
GGGAAAGTTGCAGCAGATAA+TGG 0.383947 1_2:-6210107 Msa0052020:CDS
TGAAGTTGAATGTGATTGTT+AGG 0.384096 1_2:+6208497 None:intergenic
TGTTATTAAGTTTGGTTACA+TGG 0.402972 1_2:+6208630 None:intergenic
ATAAATATTATGCAGATTAG+TGG 0.407993 1_2:-6210129 Msa0052020:intron
CCTCTTCAACTTCTTCCAAA+TGG 0.409092 1_2:-6210778 Msa0052020:CDS
CTTTGAAATGAAAGTAATCC+TGG 0.413784 1_2:+6208734 None:intergenic
AAAGTAATCCTGGCATGGTT+TGG 0.415252 1_2:+6208744 None:intergenic
AGGATTATTGTATGGGAAGA+TGG 0.415442 1_2:-6210379 Msa0052020:CDS
AAAAGAGTGGGGAGAGTGTT+GGG 0.415986 1_2:+6210877 None:intergenic
CAGCAGATAATGGTCACAAA+TGG 0.418083 1_2:-6210097 Msa0052020:CDS
CTCTTCAACTTCTTCCAAAT+GGG 0.420849 1_2:-6210777 Msa0052020:CDS
TAAATATTATGCAGATTAGT+GGG 0.421333 1_2:-6210128 Msa0052020:intron
GCTGTCATTGCTGTCAAAGA+AGG 0.450482 1_2:-6209514 Msa0052020:CDS
GTAATGCATGGATGTTGAAA+TGG 0.457555 1_2:+6208698 None:intergenic
AGCTACCTCCAAACCATGCC+AGG 0.471115 1_2:-6208752 Msa0052020:CDS
GGCTATCATGGAGAAATAGT+TGG 0.477446 1_2:+6208592 None:intergenic
GAAAACAGCATAGACCCATT+TGG 0.478391 1_2:+6210763 None:intergenic
ATTTAACATTAATGAACAAA+AGG 0.480526 1_2:+6208195 None:intergenic
AGCAGATAATGGTCACAAAT+GGG 0.486308 1_2:-6210096 Msa0052020:CDS
GAATGTGAGCAAAGGAAGAA+TGG 0.490985 1_2:-6210340 Msa0052020:CDS
TACAACCATAATGGAGTGAG+TGG 0.492749 1_2:-6210957 Msa0052020:five_prime_UTR
ATTAGGCCACCACAATGGTA+TGG 0.496095 1_2:-6208278 Msa0052020:three_prime_UTR
GGCATTGATGTTCCATTCTG+TGG 0.500646 1_2:+6208548 None:intergenic
TTTATAGTGACACTCAAAAT+GGG 0.504799 1_2:-6210073 Msa0052020:CDS
GTTTGTTAGGATTATTGTAT+GGG 0.510760 1_2:-6210386 Msa0052020:intron
GGTTTAAATCATCCACAGAA+TGG 0.513835 1_2:-6208560 Msa0052020:CDS
TCCATGATAGCCATAAACTT+AGG 0.517062 1_2:-6208581 Msa0052020:CDS
GACTTCTCTTGATCGTTCCA+AGG 0.518829 1_2:-6210562 Msa0052020:CDS
AGTATAATGATCACATTTGA+AGG 0.520545 1_2:+6210900 None:intergenic
GAGGTTTATAGTTATGGAGA+AGG 0.523360 1_2:-6210268 Msa0052020:CDS
GAACATCAATGCCACCACTT+TGG 0.530008 1_2:-6208538 Msa0052020:CDS
TTAGGCCACCACAATGGTAT+GGG 0.530375 1_2:-6208277 Msa0052020:three_prime_UTR
GTAATCCTGGCATGGTTTGG+AGG 0.532606 1_2:+6208747 None:intergenic
TGTTTAAGGTGGGAATTTGG+AGG 0.535611 1_2:-6210585 Msa0052020:intron
AAATGAAAGTAATCCTGGCA+TGG 0.539286 1_2:+6208739 None:intergenic
GTTTAAGGTGGGAATTTGGA+GGG 0.541664 1_2:-6210584 Msa0052020:intron
AATTATAATTATGAGAGAGA+TGG 0.544464 1_2:-6208321 Msa0052020:three_prime_UTR
AGGTTTATAGTTATGGAGAA+GGG 0.550052 1_2:-6210267 Msa0052020:intron
AAAGAAGGCTTAGTACAACT+TGG 0.558403 1_2:-6209499 Msa0052020:CDS
CCATTTGGAAGAAGTTGAAG+AGG 0.562010 1_2:+6210778 None:intergenic
AAATTTGGTTTGGTAATGCA+TGG 0.564278 1_2:+6208686 None:intergenic
TTGGAAGAAGTTGAAGAGGT+AGG 0.566819 1_2:+6210782 None:intergenic
ATTCTTCAAAATGTCTCATG+AGG 0.574625 1_2:-6210287 Msa0052020:CDS
TGATCAATTGAAGCATTCCA+TGG 0.576323 1_2:+6210029 None:intergenic
ATGCTAACTATGTTGGTCCA+TGG 0.581522 1_2:-6210046 Msa0052020:CDS
ACTTCTCTTGATCGTTCCAA+GGG 0.587449 1_2:-6210561 Msa0052020:CDS
TGTTGAAATGGTATGTGTTG+TGG 0.592823 1_2:+6208710 None:intergenic
ATTTAGTGCTCAACATACAA+AGG 0.592918 1_2:-6208781 Msa0052020:CDS
TGATTGTTAGGCAAAGAAAG+TGG 0.598592 1_2:+6208509 None:intergenic
CAACCATAATGGAGTGAGTG+GGG 0.600956 1_2:-6210955 Msa0052020:five_prime_UTR
GCCACAAAGTGAAATTGAAG+AGG 0.604224 1_2:-6208448 Msa0052020:CDS
ACAACTTGGTTCATTTAACA+AGG 0.613113 1_2:-6209485 Msa0052020:intron
CCACAAAGTGAAATTGAAGA+GGG 0.615077 1_2:-6208447 Msa0052020:CDS
TGCAAGAGAGAATGAAGCAA+GGG 0.620819 1_2:+6210833 None:intergenic
AAATATTATGCAGATTAGTG+GGG 0.628220 1_2:-6210127 Msa0052020:intron
GGCCACCACAATGGTATGGG+TGG 0.628616 1_2:-6208274 Msa0052020:three_prime_UTR
GGGTGTGATGCTAACTATGT+TGG 0.633314 1_2:-6210053 Msa0052020:CDS
TTGCAAGAGAGAATGAAGCA+AGG 0.644935 1_2:+6210832 None:intergenic
GAAAGTGGAGGTGACCAAAG+TGG 0.664958 1_2:+6208524 None:intergenic
ACAACCATAATGGAGTGAGT+GGG 0.665654 1_2:-6210956 Msa0052020:five_prime_UTR
AGTGGAGGTGACCAAAGTGG+TGG 0.667830 1_2:+6208527 None:intergenic
AACCATAATGGAGTGAGTGG+GGG 0.680191 1_2:-6210954 Msa0052020:five_prime_UTR
TGCCACCCATACCATTGTGG+TGG 0.687268 1_2:+6208272 None:intergenic
CACGTATCTTTCCTCCACCA+AGG 0.689055 1_2:-6210727 Msa0052020:intron
TTGTTAGGCAAAGAAAGTGG+AGG 0.694470 1_2:+6208512 None:intergenic
ATGTGCCACCCATACCATTG+TGG 0.698050 1_2:+6208269 None:intergenic
CTGGGATTAGGCCACCACAA+TGG 0.700123 1_2:-6208283 Msa0052020:three_prime_UTR
CTTGGTGGAGGAAAGATACG+TGG 0.715762 1_2:+6210728 None:intergenic
TTGTGGTGGCCTAATCCCAG+TGG 0.727420 1_2:+6208286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTTTTTTATAGTAT+AGG - chr1_2:6208480-6208499 Msa0052020:CDS 10.0%
!!! AAAATTACAAAAACATTTTA+AGG + chr1_2:6209909-6209928 None:intergenic 10.0%
!!! TTTTTTAATTTTGTTACATA+AGG + chr1_2:6210058-6210077 None:intergenic 10.0%
!!! TAATATTTAGTATTTTACCT+TGG + chr1_2:6208427-6208446 None:intergenic 15.0%
!!! AAATCTTATTTTCTTAAACA+TGG + chr1_2:6208932-6208951 None:intergenic 15.0%
!!! ATCAAATTACTATTCATTTT+TGG - chr1_2:6209588-6209607 Msa0052020:intron 15.0%
!! ACTAATGAAATATACATTTA+AGG + chr1_2:6210111-6210130 None:intergenic 15.0%
!! ATTTAACATTAATGAACAAA+AGG + chr1_2:6210942-6210961 None:intergenic 15.0%
!!! AATTGGTAAGTTTTATTTCA+TGG - chr1_2:6208605-6208624 Msa0052020:CDS 20.0%
!!! AGATTTTACTATCTTTTTAG+TGG - chr1_2:6208946-6208965 Msa0052020:intron 20.0%
!!! GATTTTACTATCTTTTTAGT+GGG - chr1_2:6208947-6208966 Msa0052020:intron 20.0%
!! ATAAATATTATGCAGATTAG+TGG - chr1_2:6209005-6209024 Msa0052020:intron 20.0%
!! TAAATATTATGCAGATTAGT+GGG - chr1_2:6209006-6209025 Msa0052020:intron 20.0%
!! CATAATTTACAAAGAAAATG+AGG + chr1_2:6209358-6209377 None:intergenic 20.0%
!!! CTCATTTTCTTTGTAAATTA+TGG - chr1_2:6209356-6209375 Msa0052020:intron 20.0%
!! CTATTTCAATGTTAACTTAT+GGG + chr1_2:6209386-6209405 None:intergenic 20.0%
!! ACTATTTCAATGTTAACTTA+TGG + chr1_2:6209387-6209406 None:intergenic 20.0%
!!! ATAGTAATTTGATAGCATTA+TGG + chr1_2:6209581-6209600 None:intergenic 20.0%
!!! ACGATTTTTTCGAAATATTT+AGG + chr1_2:6210006-6210025 None:intergenic 20.0%
!!! ATCTTTAGTCTGTAATTTTA+TGG + chr1_2:6210175-6210194 None:intergenic 20.0%
!! ATGATTTAAACCTAAGTTTA+TGG + chr1_2:6210566-6210585 None:intergenic 20.0%
!! ACATTTCATATTGCTAATTA+TGG - chr1_2:6210711-6210730 Msa0052020:intron 20.0%
!! AATTATAATTATGAGAGAGA+TGG - chr1_2:6210813-6210832 Msa0052020:CDS 20.0%
! ATGTGAACACTATTGTAAAA+TGG + chr1_2:6208208-6208227 None:intergenic 25.0%
!! TTACAATAGTGTTCACATTT+TGG - chr1_2:6208210-6208229 Msa0052020:three_prime_UTR 25.0%
! AGTATAATGATCACATTTGA+AGG + chr1_2:6208237-6208256 None:intergenic 25.0%
!! TATTTAGTATTTTACCTTGG+TGG + chr1_2:6208424-6208443 None:intergenic 25.0%
!!! AATAACACGTTTTGTTTGTT+AGG - chr1_2:6208735-6208754 Msa0052020:CDS 25.0%
!! TGTTTGTTAGGATTATTGTA+TGG - chr1_2:6208747-6208766 Msa0052020:CDS 25.0%
!! GTTTGTTAGGATTATTGTAT+GGG - chr1_2:6208748-6208767 Msa0052020:CDS 25.0%
!!! ATTTTAATGAATGTGAGCAA+AGG - chr1_2:6208786-6208805 Msa0052020:CDS 25.0%
! AAATATTATGCAGATTAGTG+GGG - chr1_2:6209007-6209026 Msa0052020:intron 25.0%
! TTTATAGTGACACTCAAAAT+GGG - chr1_2:6209061-6209080 Msa0052020:intron 25.0%
!! AACATTTAGAATTTGCACAA+AGG + chr1_2:6209190-6209209 None:intergenic 25.0%
! ACACAAAAGTTGTCAAAAAA+TGG + chr1_2:6209270-6209289 None:intergenic 25.0%
!! TCTGTCTTTTATTAGTTAGT+TGG - chr1_2:6209824-6209843 Msa0052020:intron 25.0%
!! TTTCGAAAAAATCGTCATTT+TGG - chr1_2:6210011-6210030 Msa0052020:intron 25.0%
! TCATCAAATATATCTTTCGT+TGG - chr1_2:6210139-6210158 Msa0052020:intron 25.0%
! TGTTATTAAGTTTGGTTACA+TGG + chr1_2:6210507-6210526 None:intergenic 25.0%
! ATCTTGCATGTTATTAAGTT+TGG + chr1_2:6210515-6210534 None:intergenic 25.0%
! TTCAACTTCATGAAACAAAT+AGG - chr1_2:6210650-6210669 Msa0052020:intron 25.0%
!!! GTGTTATTTGTTTAGGAATT+AGG + chr1_2:6210763-6210782 None:intergenic 25.0%
!!! ACAACTAGTGTTATTTGTTT+AGG + chr1_2:6210770-6210789 None:intergenic 25.0%
!! CTAATGTGCTTTGTTGTTTA+AGG - chr1_2:6208535-6208554 Msa0052020:CDS 30.0%
TCCAAGGGAAATAAAGAAAT+TGG - chr1_2:6208588-6208607 Msa0052020:CDS 30.0%
! ACCAATTTCTTTATTTCCCT+TGG + chr1_2:6208592-6208611 None:intergenic 30.0%
ATTCTTCAAAATGTCTCATG+AGG - chr1_2:6208847-6208866 Msa0052020:intron 30.0%
TCTCATGAGGTTTATAGTTA+TGG - chr1_2:6208860-6208879 Msa0052020:intron 30.0%
AGGTTTATAGTTATGGAGAA+GGG - chr1_2:6208867-6208886 Msa0052020:intron 30.0%
GTTTATAGTGACACTCAAAA+TGG - chr1_2:6209060-6209079 Msa0052020:intron 30.0%
ATGCTTCAATTGATCATGTA+AGG - chr1_2:6209112-6209131 Msa0052020:intron 30.0%
TGCTTCAATTGATCATGTAA+GGG - chr1_2:6209113-6209132 Msa0052020:intron 30.0%
! ATTTAGAATTTGCACAAAGG+AGG + chr1_2:6209187-6209206 None:intergenic 30.0%
!! TTAAATTTTGACAGCAACCA+AGG - chr1_2:6209427-6209446 Msa0052020:intron 30.0%
!! TAAATTTTGACAGCAACCAA+GGG - chr1_2:6209428-6209447 Msa0052020:intron 30.0%
ACAACTTGGTTCATTTAACA+AGG - chr1_2:6209649-6209668 Msa0052020:intron 30.0%
!! GCTCATATTTTGAAGGAAAA+AGG + chr1_2:6209682-6209701 None:intergenic 30.0%
! ATATGAGCACAGAACAATTT+TGG - chr1_2:6209694-6209713 Msa0052020:intron 30.0%
!! TTTTGGTCTTTAAATATGCG+CGG - chr1_2:6209711-6209730 Msa0052020:intron 30.0%
TTTGATACGTGTAGAATTCA+AGG - chr1_2:6209926-6209945 Msa0052020:intron 30.0%
TTGATACGTGTAGAATTCAA+GGG - chr1_2:6209927-6209946 Msa0052020:intron 30.0%
TTGCAAGTTTAATACATTCG+TGG - chr1_2:6210213-6210232 Msa0052020:intron 30.0%
! GATTTGGTCTCTAAATATGT+GGG + chr1_2:6210255-6210274 None:intergenic 30.0%
!! TGATTTGGTCTCTAAATATG+TGG + chr1_2:6210256-6210275 None:intergenic 30.0%
TATTTGAGTAGATCGTGATT+TGG + chr1_2:6210271-6210290 None:intergenic 30.0%
ATTTAGTGCTCAACATACAA+AGG - chr1_2:6210353-6210372 Msa0052020:CDS 30.0%
!! CTTTGAAATGAAAGTAATCC+TGG + chr1_2:6210403-6210422 None:intergenic 30.0%
!! AAATTTGGTTTGGTAATGCA+TGG + chr1_2:6210451-6210470 None:intergenic 30.0%
CATCATTTGGAAATTTGGTT+TGG + chr1_2:6210461-6210480 None:intergenic 30.0%
CAAACCAAATTTCCAAATGA+TGG - chr1_2:6210459-6210478 Msa0052020:intron 30.0%
CTTTCCATCATTTGGAAATT+TGG + chr1_2:6210466-6210485 None:intergenic 30.0%
TGAAGTTGAATGTGATTGTT+AGG + chr1_2:6210640-6210659 None:intergenic 30.0%
GCTAATTATGGAGATCAAAA+AGG - chr1_2:6210723-6210742 Msa0052020:intron 30.0%
TTATGGAGATCAAAAAGGAA+AGG - chr1_2:6210728-6210747 Msa0052020:CDS 30.0%
TTCCATTGTGCAAAAAGAGT+GGG + chr1_2:6208272-6208291 None:intergenic 35.0%
TTTCCATTGTGCAAAAAGAG+TGG + chr1_2:6208273-6208292 None:intergenic 35.0%
! TCTTTTTGCACAATGGAAAG+TGG - chr1_2:6208274-6208293 Msa0052020:three_prime_UTR 35.0%
CTCTTCAACTTCTTCCAAAT+GGG - chr1_2:6208357-6208376 Msa0052020:three_prime_UTR 35.0%
! TTAGTATTTTACCTTGGTGG+AGG + chr1_2:6208421-6208440 None:intergenic 35.0%
!! ATGTGCTTTGTTGTTTAAGG+TGG - chr1_2:6208538-6208557 Msa0052020:CDS 35.0%
!! TGTGCTTTGTTGTTTAAGGT+GGG - chr1_2:6208539-6208558 Msa0052020:CDS 35.0%
! TGTTGTTTAAGGTGGGAATT+TGG - chr1_2:6208546-6208565 Msa0052020:CDS 35.0%
AGGATTATTGTATGGGAAGA+TGG - chr1_2:6208755-6208774 Msa0052020:CDS 35.0%
GGATGCTTGAATGAAAGATT+TGG - chr1_2:6208815-6208834 Msa0052020:intron 35.0%
GAGGTTTATAGTTATGGAGA+AGG - chr1_2:6208866-6208885 Msa0052020:intron 35.0%
! AAACATGGCAAGAAAGTGTA+AGG + chr1_2:6208917-6208936 None:intergenic 35.0%
! AGCAGATAATGGTCACAAAT+GGG - chr1_2:6209038-6209057 Msa0052020:intron 35.0%
! TGATCAATTGAAGCATTCCA+TGG + chr1_2:6209108-6209127 None:intergenic 35.0%
TGGGAGTTTCAGTTAAATTC+AGG - chr1_2:6209453-6209472 Msa0052020:intron 35.0%
TCAGTTAAATTCAGGCATTC+AGG - chr1_2:6209461-6209480 Msa0052020:intron 35.0%
AAAGAAGGCTTAGTACAACT+TGG - chr1_2:6209635-6209654 Msa0052020:intron 35.0%
!! GTTCTGTGCTCATATTTTGA+AGG + chr1_2:6209689-6209708 None:intergenic 35.0%
AAATGAAAGTAATCCTGGCA+TGG + chr1_2:6210398-6210417 None:intergenic 35.0%
TGTTGAAATGGTATGTGTTG+TGG + chr1_2:6210427-6210446 None:intergenic 35.0%
GTAATGCATGGATGTTGAAA+TGG + chr1_2:6210439-6210458 None:intergenic 35.0%
CTTCATTGCTTTCCATCATT+TGG + chr1_2:6210474-6210493 None:intergenic 35.0%
TCCATGATAGCCATAAACTT+AGG - chr1_2:6210553-6210572 Msa0052020:CDS 35.0%
ACCTAAGTTTATGGCTATCA+TGG + chr1_2:6210557-6210576 None:intergenic 35.0%
GGTTTAAATCATCCACAGAA+TGG - chr1_2:6210574-6210593 Msa0052020:CDS 35.0%
TGATTGTTAGGCAAAGAAAG+TGG + chr1_2:6210628-6210647 None:intergenic 35.0%
CCACAAAGTGAAATTGAAGA+GGG - chr1_2:6210687-6210706 Msa0052020:intron 35.0%
! ATGGTTGTATTTTGTACCAC+TGG - chr1_2:6210832-6210851 Msa0052020:CDS 35.0%
! TGGTTGTATTTTGTACCACT+GGG - chr1_2:6210833-6210852 Msa0052020:CDS 35.0%
! TATTTTGTACCACTGGGATT+AGG - chr1_2:6210839-6210858 Msa0052020:CDS 35.0%
! TACAACCATAATGGAGTGAG+TGG - chr1_2:6208177-6208196 Msa0052020:three_prime_UTR 40.0%
! ACAACCATAATGGAGTGAGT+GGG - chr1_2:6208178-6208197 Msa0052020:three_prime_UTR 40.0%
TCCATTGTGCAAAAAGAGTG+GGG + chr1_2:6208271-6208290 None:intergenic 40.0%
TGCAAGAGAGAATGAAGCAA+GGG + chr1_2:6208304-6208323 None:intergenic 40.0%
TTGCAAGAGAGAATGAAGCA+AGG + chr1_2:6208305-6208324 None:intergenic 40.0%
TTGGAAGAAGTTGAAGAGGT+AGG + chr1_2:6208355-6208374 None:intergenic 40.0%
CCATTTGGAAGAAGTTGAAG+AGG + chr1_2:6208359-6208378 None:intergenic 40.0%
CCTCTTCAACTTCTTCCAAA+TGG - chr1_2:6208356-6208375 Msa0052020:three_prime_UTR 40.0%
GAAAACAGCATAGACCCATT+TGG + chr1_2:6208374-6208393 None:intergenic 40.0%
!!! AATGGGTCTATGCTGTTTTC+TGG - chr1_2:6208374-6208393 Msa0052020:exon 40.0%
! TGTTTAAGGTGGGAATTTGG+AGG - chr1_2:6208549-6208568 Msa0052020:CDS 40.0%
! GTTTAAGGTGGGAATTTGGA+GGG - chr1_2:6208550-6208569 Msa0052020:CDS 40.0%
ACTTCTCTTGATCGTTCCAA+GGG - chr1_2:6208573-6208592 Msa0052020:CDS 40.0%
GAATGTGAGCAAAGGAAGAA+TGG - chr1_2:6208794-6208813 Msa0052020:CDS 40.0%
! CAGCAGATAATGGTCACAAA+TGG - chr1_2:6209037-6209056 Msa0052020:intron 40.0%
ATGCTAACTATGTTGGTCCA+TGG - chr1_2:6209088-6209107 Msa0052020:intron 40.0%
! ATTCAGGCATTCAGGTTAGT+TGG - chr1_2:6209469-6209488 Msa0052020:intron 40.0%
! TTCAGGCATTCAGGTTAGTT+GGG - chr1_2:6209470-6209489 Msa0052020:intron 40.0%
TTTCAGTCCTCAATTGTGTG+AGG + chr1_2:6209970-6209989 None:intergenic 40.0%
GTGTCTATGCTAAGTCAGTT+TGG - chr1_2:6210084-6210103 Msa0052020:CDS 40.0%
TGGTCTCTAAATATGTGGGT+CGG + chr1_2:6210251-6210270 None:intergenic 40.0%
AAAGTAATCCTGGCATGGTT+TGG + chr1_2:6210393-6210412 None:intergenic 40.0%
GGCTATCATGGAGAAATAGT+TGG + chr1_2:6210545-6210564 None:intergenic 40.0%
TTGTTAGGCAAAGAAAGTGG+AGG + chr1_2:6210625-6210644 None:intergenic 40.0%
GCCACAAAGTGAAATTGAAG+AGG - chr1_2:6210686-6210705 Msa0052020:intron 40.0%
CCCTCTTCAATTTCACTTTG+TGG + chr1_2:6210690-6210709 None:intergenic 40.0%
GAGATCAAAAAGGAAAGGCA+GGG - chr1_2:6210733-6210752 Msa0052020:CDS 40.0%
! CAACCATAATGGAGTGAGTG+GGG - chr1_2:6208179-6208198 Msa0052020:three_prime_UTR 45.0%
! AACCATAATGGAGTGAGTGG+GGG - chr1_2:6208180-6208199 Msa0052020:three_prime_UTR 45.0%
!! AAAAGAGTGGGGAGAGTGTT+GGG + chr1_2:6208260-6208279 None:intergenic 45.0%
! AAAAAGAGTGGGGAGAGTGT+TGG + chr1_2:6208261-6208280 None:intergenic 45.0%
! TCCCCACTCTTTTTGCACAA+TGG - chr1_2:6208267-6208286 Msa0052020:three_prime_UTR 45.0%
!!! GGTCTATGCTGTTTTCTGGA+GGG - chr1_2:6208378-6208397 Msa0052020:exon 45.0%
GACTTCTCTTGATCGTTCCA+AGG - chr1_2:6208572-6208591 Msa0052020:CDS 45.0%
GGGAAAGTTGCAGCAGATAA+TGG - chr1_2:6209027-6209046 Msa0052020:intron 45.0%
GGGTGTGATGCTAACTATGT+TGG - chr1_2:6209081-6209100 Msa0052020:intron 45.0%
GCTGTCATTGCTGTCAAAGA+AGG - chr1_2:6209620-6209639 Msa0052020:intron 45.0%
AACAGTGCCTCACACAATTG+AGG - chr1_2:6209960-6209979 Msa0052020:intron 45.0%
!! GGCATTGATGTTCCATTCTG+TGG + chr1_2:6210589-6210608 None:intergenic 45.0%
GAACATCAATGCCACCACTT+TGG - chr1_2:6210596-6210615 Msa0052020:intron 45.0%
GGAGATCAAAAAGGAAAGGC+AGG - chr1_2:6210732-6210751 Msa0052020:CDS 45.0%
ATCAAAAAGGAAAGGCAGGG+TGG - chr1_2:6210736-6210755 Msa0052020:CDS 45.0%
ATTAGGCCACCACAATGGTA+TGG - chr1_2:6210856-6210875 Msa0052020:exon 45.0%
TTAGGCCACCACAATGGTAT+GGG - chr1_2:6210857-6210876 Msa0052020:exon 45.0%
! TGGGTGGCACATTTTATGTG+TGG - chr1_2:6210876-6210895 Msa0052020:five_prime_UTR 45.0%
TACCCCCACTCACTCCATTA+TGG + chr1_2:6208185-6208204 None:intergenic 50.0%
!!! GGGTCTATGCTGTTTTCTGG+AGG - chr1_2:6208377-6208396 Msa0052020:exon 50.0%
CTTGGTGGAGGAAAGATACG+TGG + chr1_2:6208409-6208428 None:intergenic 50.0%
CACGTATCTTTCCTCCACCA+AGG - chr1_2:6208407-6208426 Msa0052020:CDS 50.0%
TTTGACAGCAACCAAGGGCA+TGG - chr1_2:6209433-6209452 Msa0052020:intron 50.0%
! TTGACAGCAACCAAGGGCAT+GGG - chr1_2:6209434-6209453 Msa0052020:intron 50.0%
AACTGAAACTCCCATGCCCT+TGG + chr1_2:6209447-6209466 None:intergenic 50.0%
! GTAATCCTGGCATGGTTTGG+AGG + chr1_2:6210390-6210409 None:intergenic 50.0%
GAAAGTGGAGGTGACCAAAG+TGG + chr1_2:6210613-6210632 None:intergenic 50.0%
ATGTGCCACCCATACCATTG+TGG + chr1_2:6210868-6210887 None:intergenic 50.0%
AGCTACCTCCAAACCATGCC+AGG - chr1_2:6210382-6210401 Msa0052020:intron 55.0%
AGTGGAGGTGACCAAAGTGG+TGG + chr1_2:6210610-6210629 None:intergenic 55.0%
TTGTGGTGGCCTAATCCCAG+TGG + chr1_2:6210851-6210870 None:intergenic 55.0%
CTGGGATTAGGCCACCACAA+TGG - chr1_2:6210851-6210870 Msa0052020:CDS 55.0%
TGCCACCCATACCATTGTGG+TGG + chr1_2:6210865-6210884 None:intergenic 55.0%
GGCCACCACAATGGTATGGG+TGG - chr1_2:6210860-6210879 Msa0052020:exon 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 6208169 6210987 6208169 ID=Msa0052020;Name=Msa0052020
chr1_2 mRNA 6208169 6210987 6208169 ID=Msa0052020-mRNA-1;Parent=Msa0052020;Name=Msa0052020-mRNA-1;_AED=0.24;_eAED=0.24;_QI=117|0.6|0.83|1|0.6|0.5|6|216|310
chr1_2 exon 6208169 6208819 6208169 ID=Msa0052020-mRNA-1:exon:1998;Parent=Msa0052020-mRNA-1
chr1_2 exon 6209486 6209542 6209486 ID=Msa0052020-mRNA-1:exon:1997;Parent=Msa0052020-mRNA-1
chr1_2 exon 6210028 6210136 6210028 ID=Msa0052020-mRNA-1:exon:1996;Parent=Msa0052020-mRNA-1
chr1_2 exon 6210268 6210399 6210268 ID=Msa0052020-mRNA-1:exon:1995;Parent=Msa0052020-mRNA-1
chr1_2 exon 6210543 6210599 6210543 ID=Msa0052020-mRNA-1:exon:1994;Parent=Msa0052020-mRNA-1
chr1_2 exon 6210728 6210987 6210728 ID=Msa0052020-mRNA-1:exon:1993;Parent=Msa0052020-mRNA-1
chr1_2 five_prime_UTR 6210871 6210987 6210871 ID=Msa0052020-mRNA-1:five_prime_utr;Parent=Msa0052020-mRNA-1
chr1_2 CDS 6210728 6210870 6210728 ID=Msa0052020-mRNA-1:cds;Parent=Msa0052020-mRNA-1
chr1_2 CDS 6210543 6210599 6210543 ID=Msa0052020-mRNA-1:cds;Parent=Msa0052020-mRNA-1
chr1_2 CDS 6210268 6210399 6210268 ID=Msa0052020-mRNA-1:cds;Parent=Msa0052020-mRNA-1
chr1_2 CDS 6210028 6210136 6210028 ID=Msa0052020-mRNA-1:cds;Parent=Msa0052020-mRNA-1
chr1_2 CDS 6209486 6209542 6209486 ID=Msa0052020-mRNA-1:cds;Parent=Msa0052020-mRNA-1
chr1_2 CDS 6208385 6208819 6208385 ID=Msa0052020-mRNA-1:cds;Parent=Msa0052020-mRNA-1
chr1_2 three_prime_UTR 6208169 6208384 6208169 ID=Msa0052020-mRNA-1:three_prime_utr;Parent=Msa0052020-mRNA-1
Gene Sequence

>Msa0052020

ATGGAAAGTGGATTACCCTTGCTTCATTCTCTCTTGCAACATACTCTAAGAAACTTATGCTCATTTCCTACCTCTTCAACTTCTTCCAAATGGGTCTATGCTGTTTTCTGGAGGGTAGTACCACGTATCTTTCCTCCACCAAGGTGGGAATTTGGAGGGACTTCTCTTGATCGTTCCAAGGGAAATAAAGAAATTGGTAAGATTATTGTATGGGAAGATGGATTCTGTGATTTTAATGAATGTGAGCAAAGGAAGAATGGATGCTTGAATGAAAGATTTGGAGCTGATGTATTCTTCAAAATGTCTCATGAGGTTTATAGTTATGGAGAAGGATTAGTGGGGAAAGTTGCAGCAGATAATGGTCACAAATGGGTTTATAGTGACACTCAAAATGGGTGTGATGCTAACTATGTTGGTCCATGGAATGCTTCAATTGATCATACTATTGCTGTCATTGCTGTCAAAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGATTGCAGAAGATCTTGATTTAGTGCTCAACATACAAAGGAAATTCAGCTACCTCCAAACCATGCCAGGATTACTTTCATTTCAAAGACCACAACACATACCATTTCAACATCCATGCATTACCAAACCAAATTTCCAAATGATGGAAAGCAATGAAGTTTCTAAGAACCATGTAACCAAACTTAATAACATGCAAGATGAAAGATCCAACTATTTCTCCATGATAGCCATAAACTTAGGTTTAAATCATCCACAGAATGGAACATCAATGCCACCACTTTGGTCACCTCCACTTTCTTTGCCTAACAATCACATTCAACTTCATGAAACAAATAGGATCAATAACACAAGCCACAAAGTGAAATTGAAGAGGGCACATTTCATATTGCTAATTATGGAGATCAAAAAGGAAAGGCAGGGTGGTCCTAATTCCTAA

Protein sequence

>Msa0052020

MESGLPLLHSLLQHTLRNLCSFPTSSTSSKWVYAVFWRVVPRIFPPPRWEFGGTSLDRSKGNKEIGKIIVWEDGFCDFNECEQRKNGCLNERFGADVFFKMSHEVYSYGEGLVGKVAADNGHKWVYSDTQNGCDANYVGPWNASIDHTIAVIAVKEGLVQLGSFNKIAEDLDLVLNIQRKFSYLQTMPGLLSFQRPQHIPFQHPCITKPNFQMMESNEVSKNHVTKLNNMQDERSNYFSMIAINLGLNHPQNGTSMPPLWSPPLSLPNNHIQLHETNRINNTSHKVKLKRAHFILLIMEIKKERQGGPNS*