Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136980 | XP_013449694.1 | 99.111 | 450 | 3 | 1 | 1 | 450 | 1 | 449 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136980 | sp|Q9ZT91|EFTM_ARATH | 85.463 | 454 | 57 | 5 | 4 | 450 | 3 | 454 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136980 | A0A072U201 | 99.111 | 450 | 3 | 1 | 1 | 450 | 1 | 449 | 0.0 | 909 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0648620 | Msa1136980 | 0.842313 | 2.790021e-58 | -8.615850e-47 |
| Msa0648670 | Msa1136980 | 0.851018 | 1.166496e-60 | -8.615850e-47 |
| Msa0686660 | Msa1136980 | 0.801988 | 6.942839e-49 | -8.615850e-47 |
| Msa0790450 | Msa1136980 | 0.811563 | 6.577935e-51 | -8.615850e-47 |
| Msa0188740 | Msa1136980 | 0.820317 | 7.311397e-53 | -8.615850e-47 |
| Msa0192300 | Msa1136980 | 0.821425 | 4.064725e-53 | -8.615850e-47 |
| Msa0195030 | Msa1136980 | 0.812137 | 4.932284e-51 | -8.615850e-47 |
| Msa0237180 | Msa1136980 | 0.832117 | 1.135112e-55 | -8.615850e-47 |
| Msa0377370 | Msa1136980 | 0.818323 | 2.080947e-52 | -8.615850e-47 |
| Msa0472480 | Msa1136980 | 0.803958 | 2.718973e-49 | -8.615850e-47 |
| Msa0270160 | Msa1136980 | 0.815595 | 8.528268e-52 | -8.615850e-47 |
| Msa0301250 | Msa1136980 | 0.818983 | 1.474052e-52 | -8.615850e-47 |
| Msa0313060 | Msa1136980 | 0.817938 | 2.543479e-52 | -8.615850e-47 |
| Msa0315660 | Msa1136980 | 0.816701 | 4.828048e-52 | -8.615850e-47 |
| Msa1116940 | Msa1136980 | 0.874431 | 6.789764e-68 | -8.615850e-47 |
| Msa1136880 | Msa1136980 | 0.904485 | 1.168097e-79 | -8.615850e-47 |
| Msa1136980 | Msa1213850 | 0.807706 | 4.433760e-50 | -8.615850e-47 |
| Msa1136980 | Msa1235950 | 0.824718 | 6.936135e-54 | -8.615850e-47 |
| Msa1136980 | Msa1235980 | 0.824078 | 9.808540e-54 | -8.615850e-47 |
| Msa1136980 | Msa1237040 | 0.849767 | 2.618158e-60 | -8.615850e-47 |
| Msa1136980 | Msa1278130 | 0.809018 | 2.327499e-50 | -8.615850e-47 |
| Msa1136980 | Msa1317390 | 0.828847 | 7.158507e-55 | -8.615850e-47 |
| Msa1136980 | Msa1341780 | 0.803387 | 3.571103e-49 | -8.615850e-47 |
| Msa1136980 | Msa1347610 | 0.804458 | 2.139552e-49 | -8.615850e-47 |
| Msa1136980 | Msa1403520 | 0.811166 | 8.020784e-51 | -8.615850e-47 |
| Msa1136980 | Msa1450560 | 0.808884 | 2.487308e-50 | -8.615850e-47 |
| Msa1136980 | Msa1453530 | 0.800767 | 1.235217e-48 | -8.615850e-47 |
| Msa1136980 | Msa1465700 | 0.826723 | 2.320183e-54 | -8.615850e-47 |
| Msa0485220 | Msa1136980 | 0.808367 | 3.206466e-50 | -8.615850e-47 |
| Msa0929700 | Msa1136980 | 0.803628 | 3.183681e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136980 | MtrunA17_Chr7g0259481 | 99.111 | 450 | 3 | 1 | 1 | 450 | 1 | 449 | 0.0 | 909 |
| Msa1136980 | MtrunA17_Chr3g0116821 | 61.039 | 462 | 145 | 7 | 5 | 449 | 45 | 488 | 1.79e-175 | 500 |
| Msa1136980 | MtrunA17_Chr2g0287231 | 90.233 | 215 | 21 | 0 | 62 | 276 | 14 | 228 | 4.66e-143 | 408 |
| Msa1136980 | MtrunA17_Chr3g0114371 | 66.524 | 233 | 55 | 3 | 219 | 450 | 63 | 273 | 3.30e-98 | 295 |
| Msa1136980 | MtrunA17_Chr3g0114371 | 77.612 | 67 | 11 | 1 | 55 | 121 | 1 | 63 | 4.48e-18 | 84.0 |
| Msa1136980 | MtrunA17_Chr2g0287241 | 75.000 | 188 | 44 | 2 | 265 | 450 | 19 | 205 | 1.37e-96 | 289 |
| Msa1136980 | MtrunA17_Chr1g0200121 | 30.137 | 438 | 246 | 14 | 60 | 448 | 3 | 429 | 7.02e-46 | 165 |
| Msa1136980 | MtrunA17_Chr1g0200071 | 30.137 | 438 | 246 | 14 | 60 | 448 | 3 | 429 | 8.03e-46 | 164 |
| Msa1136980 | MtrunA17_Chr1g0200091 | 30.137 | 438 | 246 | 14 | 60 | 448 | 3 | 429 | 8.03e-46 | 164 |
| Msa1136980 | MtrunA17_Chr6g0458111 | 30.137 | 438 | 246 | 14 | 60 | 448 | 3 | 429 | 8.91e-46 | 164 |
| Msa1136980 | MtrunA17_Chr6g0458091 | 30.137 | 438 | 246 | 14 | 60 | 448 | 3 | 429 | 8.91e-46 | 164 |
| Msa1136980 | MtrunA17_Chr4g0005781 | 29.909 | 438 | 247 | 14 | 60 | 448 | 3 | 429 | 2.09e-45 | 163 |
| Msa1136980 | MtrunA17_Chr1g0193591 | 30.345 | 435 | 243 | 14 | 60 | 445 | 3 | 426 | 3.31e-42 | 155 |
| Msa1136980 | MtrunA17_Chr1g0150331 | 31.075 | 428 | 232 | 17 | 60 | 448 | 3 | 406 | 1.54e-40 | 150 |
| Msa1136980 | MtrunA17_Chr1g0156421 | 28.899 | 436 | 256 | 14 | 59 | 448 | 2 | 429 | 9.08e-38 | 143 |
| Msa1136980 | MtrunA17_Chr1g0204031 | 29.977 | 437 | 247 | 17 | 58 | 448 | 1 | 424 | 1.14e-37 | 146 |
| Msa1136980 | MtrunA17_Chr8g0380091 | 29.545 | 440 | 248 | 16 | 61 | 449 | 272 | 700 | 2.74e-37 | 144 |
| Msa1136980 | MtrunA17_Chr8g0340771 | 27.945 | 433 | 254 | 12 | 65 | 448 | 8 | 431 | 3.30e-33 | 130 |
| Msa1136980 | MtrunA17_Chr8g0336511 | 31.153 | 321 | 182 | 9 | 59 | 348 | 67 | 379 | 3.53e-33 | 129 |
| Msa1136980 | MtrunA17_Chr5g0415391 | 27.177 | 379 | 229 | 15 | 102 | 445 | 22 | 388 | 6.46e-28 | 114 |
| Msa1136980 | MtrunA17_Chr6g0483121 | 27.765 | 443 | 244 | 18 | 62 | 446 | 89 | 513 | 1.00e-26 | 112 |
| Msa1136980 | MtrunA17_Chr8g0392641 | 27.455 | 448 | 239 | 18 | 62 | 446 | 144 | 568 | 1.58e-26 | 112 |
| Msa1136980 | MtrunA17_Chr2g0318291 | 32.828 | 198 | 106 | 6 | 62 | 235 | 7 | 201 | 1.77e-25 | 103 |
| Msa1136980 | MtrunA17_Chr1g0196251 | 28.024 | 339 | 187 | 10 | 62 | 373 | 6 | 314 | 2.20e-22 | 98.6 |
| Msa1136980 | MtrunA17_Chr4g0040791 | 30.100 | 299 | 187 | 9 | 17 | 300 | 4 | 295 | 2.32e-21 | 97.1 |
| Msa1136980 | MtrunA17_Chr1g0204041 | 31.737 | 167 | 86 | 3 | 65 | 206 | 8 | 171 | 7.03e-19 | 84.0 |
| Msa1136980 | MtrunA17_Chr2g0319341 | 28.902 | 346 | 183 | 16 | 144 | 445 | 1 | 327 | 1.07e-18 | 88.2 |
| Msa1136980 | MtrunA17_Chr1g0173551 | 26.842 | 380 | 232 | 16 | 2 | 357 | 16 | 373 | 1.60e-17 | 85.1 |
| Msa1136980 | MtrunA17_Chr2g0315521 | 27.083 | 288 | 125 | 11 | 65 | 299 | 33 | 288 | 2.02e-15 | 78.2 |
| Msa1136980 | MtrunA17_Chr2g0312061 | 26.207 | 290 | 125 | 11 | 65 | 299 | 33 | 288 | 3.25e-15 | 77.4 |
| Msa1136980 | MtrunA17_Chr8g0340371 | 31.169 | 154 | 85 | 3 | 60 | 192 | 3 | 156 | 4.11e-15 | 74.7 |
| Msa1136980 | MtrunA17_Chr1g0156411 | 31.159 | 138 | 73 | 3 | 65 | 180 | 12 | 149 | 7.36e-14 | 68.9 |
| Msa1136980 | MtrunA17_Chr2g0298371 | 25.507 | 345 | 175 | 15 | 144 | 443 | 1 | 308 | 1.18e-13 | 71.6 |
| Msa1136980 | MtrunA17_Chr3g0130991 | 28.571 | 245 | 142 | 8 | 66 | 301 | 85 | 305 | 7.34e-13 | 70.9 |
| Msa1136980 | MtrunA17_Chr2g0312621 | 29.386 | 228 | 138 | 6 | 70 | 297 | 502 | 706 | 8.55e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136980 | AT4G02930.1 | 85.463 | 454 | 57 | 5 | 4 | 450 | 3 | 454 | 0.0 | 748 |
| Msa1136980 | AT4G20360.1 | 61.339 | 463 | 150 | 7 | 4 | 449 | 25 | 475 | 1.27e-179 | 511 |
| Msa1136980 | AT4G20360.2 | 61.339 | 463 | 150 | 7 | 4 | 449 | 25 | 475 | 1.27e-179 | 511 |
| Msa1136980 | AT1G07920.1 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT1G07940.4 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT1G07940.1 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT1G07940.2 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT1G07940.3 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT5G60390.3 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT5G60390.1 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT5G60390.2 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT1G07930.1 | 30.046 | 436 | 249 | 13 | 60 | 448 | 3 | 429 | 4.34e-45 | 163 |
| Msa1136980 | AT5G10630.1 | 28.035 | 453 | 256 | 14 | 52 | 449 | 227 | 664 | 1.13e-33 | 134 |
| Msa1136980 | AT5G10630.5 | 28.035 | 453 | 256 | 14 | 52 | 449 | 228 | 665 | 1.14e-33 | 134 |
| Msa1136980 | AT5G10630.2 | 28.035 | 453 | 256 | 14 | 52 | 449 | 228 | 665 | 1.14e-33 | 134 |
| Msa1136980 | AT5G10630.4 | 28.035 | 453 | 256 | 14 | 52 | 449 | 303 | 740 | 1.24e-33 | 134 |
| Msa1136980 | AT5G10630.3 | 28.035 | 453 | 256 | 14 | 52 | 449 | 298 | 735 | 1.44e-33 | 134 |
| Msa1136980 | AT1G07930.2 | 33.721 | 258 | 135 | 7 | 60 | 286 | 3 | 255 | 1.08e-32 | 127 |
| Msa1136980 | AT1G18070.1 | 26.932 | 453 | 243 | 18 | 62 | 450 | 99 | 527 | 8.45e-29 | 119 |
| Msa1136980 | AT1G18070.2 | 26.932 | 453 | 243 | 18 | 62 | 450 | 99 | 527 | 8.45e-29 | 119 |
| Msa1136980 | AT1G18070.3 | 26.293 | 464 | 243 | 19 | 62 | 450 | 99 | 538 | 6.50e-26 | 110 |
| Msa1136980 | AT2G31060.2 | 31.707 | 287 | 167 | 9 | 66 | 333 | 61 | 337 | 1.93e-21 | 97.8 |
| Msa1136980 | AT2G31060.3 | 31.615 | 291 | 166 | 10 | 66 | 333 | 61 | 341 | 6.41e-21 | 96.3 |
| Msa1136980 | AT2G18720.1 | 25.672 | 335 | 188 | 11 | 65 | 353 | 39 | 358 | 1.33e-19 | 91.3 |
| Msa1136980 | AT2G18720.2 | 25.672 | 335 | 188 | 11 | 65 | 353 | 39 | 358 | 1.33e-19 | 91.3 |
| Msa1136980 | AT4G18330.2 | 26.549 | 339 | 182 | 12 | 65 | 353 | 40 | 361 | 2.16e-18 | 87.8 |
| Msa1136980 | AT4G18330.1 | 28.455 | 246 | 129 | 9 | 65 | 280 | 40 | 268 | 8.32e-16 | 78.2 |
| Msa1136980 | AT1G04170.2 | 26.374 | 273 | 146 | 8 | 65 | 299 | 34 | 289 | 4.88e-15 | 77.4 |
| Msa1136980 | AT1G04170.1 | 26.374 | 273 | 146 | 8 | 65 | 299 | 34 | 289 | 4.88e-15 | 77.4 |
| Msa1136980 | AT5G13650.1 | 25.150 | 334 | 223 | 11 | 29 | 350 | 48 | 366 | 7.70e-15 | 77.4 |
| Msa1136980 | AT2G18720.3 | 26.923 | 260 | 155 | 9 | 116 | 353 | 21 | 267 | 1.05e-14 | 75.9 |
| Msa1136980 | AT5G13650.2 | 25.926 | 297 | 194 | 10 | 66 | 350 | 85 | 367 | 2.35e-14 | 75.9 |
| Msa1136980 | AT5G08650.2 | 30.126 | 239 | 138 | 9 | 66 | 297 | 88 | 304 | 6.09e-13 | 71.2 |
| Msa1136980 | AT5G08650.1 | 30.126 | 239 | 138 | 9 | 66 | 297 | 88 | 304 | 7.67e-13 | 71.2 |
Find 126 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCCAGAAAATGTTAAAA+TGG | 0.264941 | 7_4:-5676936 | Msa1136980:CDS |
| GAACAAGGAATCATCAAAAT+TGG | 0.282024 | 7_4:-5677744 | Msa1136980:CDS |
| CTGTGATATTCAGCGGTAAT+TGG | 0.282364 | 7_4:-5676494 | Msa1136980:three_prime_UTR |
| TGAAGATGTATTCTCAATTC+AGG | 0.301803 | 7_4:-5678143 | Msa1136980:intron |
| GTTGTTAGAGCTTGTAGAAA+TGG | 0.312590 | 7_4:-5678495 | Msa1136980:CDS |
| AAACCTTACTTTAACATAAT+CGG | 0.325466 | 7_4:+5679945 | None:intergenic |
| CATGTTAACGTCGGAACTAT+TGG | 0.338907 | 7_4:-5680489 | Msa1136980:CDS |
| CAAGGATACCACCGTCCATT+TGG | 0.339574 | 7_4:+5678751 | None:intergenic |
| TTGACCTTCTACAAGTTTCC+AGG | 0.348867 | 7_4:-5678322 | Msa1136980:CDS |
| CCTCTGAAAACAACAGTTAC+TGG | 0.352891 | 7_4:-5677456 | Msa1136980:CDS |
| TGCTCTTTAGTTTGAGGCAT+TGG | 0.362727 | 7_4:+5678708 | None:intergenic |
| ATTCTTCCTCCTCCATTCCT+TGG | 0.362758 | 7_4:-5680630 | Msa1136980:CDS |
| AATGCTGAACCTCTAATGAT+AGG | 0.371728 | 7_4:+5678289 | None:intergenic |
| TGGTGATGAAGTTGAGGTTT+TGG | 0.379753 | 7_4:-5677724 | Msa1136980:CDS |
| AATCGTAGAAATGAAGGTTT+GGG | 0.382934 | 7_4:+5680790 | None:intergenic |
| AATTGAGAATACATCTTCAA+TGG | 0.404677 | 7_4:+5678147 | None:intergenic |
| TCAAGCTGGCGAACAGGGTC+AGG | 0.406901 | 7_4:+5678187 | None:intergenic |
| GTTTGAGGCATTGGTCCATC+AGG | 0.416974 | 7_4:+5678717 | None:intergenic |
| AGAATGTGCTCTTTAGTTTG+AGG | 0.417591 | 7_4:+5678702 | None:intergenic |
| CAAGGTACAAATGAGGAGAT+TGG | 0.421220 | 7_4:-5678256 | Msa1136980:CDS |
| GTGAGAGGTGATTGAGAAAT+CGG | 0.424813 | 7_4:+5680667 | None:intergenic |
| ATTTCTACGATTCGCTTCAA+TGG | 0.426643 | 7_4:-5680779 | Msa1136980:exon |
| CAGTCTGAATCGTAAGTGTT+GGG | 0.430869 | 7_4:-5676314 | Msa1136980:three_prime_UTR |
| TATCTCTGCTTCAAATCTCT+TGG | 0.432334 | 7_4:+5677060 | None:intergenic |
| CTTCCTCCTCCATTCCTTGG+TGG | 0.434975 | 7_4:-5680627 | Msa1136980:CDS |
| GAATCGTAGAAATGAAGGTT+TGG | 0.438409 | 7_4:+5680789 | None:intergenic |
| TCAATAGAATAGTCAGGTCC+TGG | 0.443825 | 7_4:+5676528 | None:intergenic |
| CGACCTGGTTCAAGTGGAAC+AGG | 0.446547 | 7_4:+5676869 | None:intergenic |
| AAGGATACCACCGTCCATTT+GGG | 0.446849 | 7_4:+5678752 | None:intergenic |
| GATGATATCCCTATCATTAG+AGG | 0.453307 | 7_4:-5678298 | Msa1136980:CDS |
| ATGAAACGAGATTTAGAGAA+GGG | 0.454443 | 7_4:+5680854 | None:intergenic |
| CAAAATTGGTGATGAAGTTG+AGG | 0.481713 | 7_4:-5677730 | Msa1136980:CDS |
| GATTACTGGAGCTGCCCAAA+TGG | 0.484093 | 7_4:-5678766 | Msa1136980:CDS |
| TGTGGAATTGAGAGGAGAAG+AGG | 0.484183 | 7_4:+5680707 | None:intergenic |
| AATGTTAAAATGGTTATGCC+TGG | 0.486949 | 7_4:-5676926 | Msa1136980:CDS |
| TTAACATAATCGGCATGTCC+AGG | 0.487540 | 7_4:+5679955 | None:intergenic |
| ACAGTCTGAATCGTAAGTGT+TGG | 0.489461 | 7_4:-5676315 | Msa1136980:three_prime_UTR |
| GCAAAGATTTGCCTTGAGAG+AGG | 0.493777 | 7_4:-5676650 | Msa1136980:CDS |
| TGAAGACATTCAGCGTGGTC+AGG | 0.494620 | 7_4:-5677277 | Msa1136980:intron |
| GAAGCGAATCGTAGAAATGA+AGG | 0.496889 | 7_4:+5680784 | None:intergenic |
| AAATGAGGAGATTGGAAGAA+AGG | 0.499059 | 7_4:-5678248 | Msa1136980:CDS |
| AAGGAATGGAGGAGGAAGAA+TGG | 0.506045 | 7_4:+5680632 | None:intergenic |
| TTGTAGGTGCTTGCTGATGA+AGG | 0.509437 | 7_4:-5680302 | Msa1136980:intron |
| TCAGCATTGTCTGCTTTACA+AGG | 0.510440 | 7_4:-5678274 | Msa1136980:CDS |
| CAATAGAATAGTCAGGTCCT+GGG | 0.511171 | 7_4:+5676529 | None:intergenic |
| CATTCCTTGGTGGAGATCCA+TGG | 0.511576 | 7_4:-5680617 | Msa1136980:CDS |
| GGCGTTTGATGAAATTGATA+AGG | 0.515289 | 7_4:-5680264 | Msa1136980:CDS |
| ATGCTGAACCTCTAATGATA+GGG | 0.516366 | 7_4:+5678290 | None:intergenic |
| AGGAATGGAGGAGGAAGAAT+GGG | 0.516893 | 7_4:+5680633 | None:intergenic |
| CAATTACCGCTGAATATCAC+AGG | 0.518093 | 7_4:+5676495 | None:intergenic |
| ATCCCCTGGAAACTTGTAGA+AGG | 0.518821 | 7_4:+5678318 | None:intergenic |
| ATTGAGAATACATCTTCAAT+GGG | 0.521499 | 7_4:+5678148 | None:intergenic |
| TGAGATGTTCAAGAAGATGT+TGG | 0.521796 | 7_4:-5677430 | Msa1136980:CDS |
| GGAAGAATGGGTAGCGTCAT+CGG | 0.522126 | 7_4:+5680645 | None:intergenic |
| TCTTCAATGGGCATCAAGAA+AGG | 0.524319 | 7_4:+5678160 | None:intergenic |
| CTTGTTGTATCTGCACCTGA+TGG | 0.528400 | 7_4:-5678732 | Msa1136980:CDS |
| ACTATTGGACACGTGGATCA+CGG | 0.528486 | 7_4:-5680474 | Msa1136980:CDS |
| CTCCTGAAGAGAAGAAAAGA+GGG | 0.530043 | 7_4:-5680241 | Msa1136980:CDS |
| AGAGAGGGTGGCAGAACAGT+TGG | 0.536414 | 7_4:-5676634 | Msa1136980:CDS |
| ATATGTCCTCACAAAGGATG+AGG | 0.538818 | 7_4:-5677038 | Msa1136980:CDS |
| TTCAAGAAGATGTTGGATCA+AGG | 0.539587 | 7_4:-5677423 | Msa1136980:CDS |
| GAAGATGTTGGATCAAGGAC+AGG | 0.545197 | 7_4:-5677418 | Msa1136980:intron |
| TCTACAAGCTCTAACAACTC+TGG | 0.547509 | 7_4:+5678500 | None:intergenic |
| CAGAACAGTTGGTGCAGGTG+TGG | 0.550692 | 7_4:-5676623 | Msa1136980:CDS |
| GCTCCTGAAGAGAAGAAAAG+AGG | 0.558794 | 7_4:-5680242 | Msa1136980:CDS |
| TTGAGGACTGCTGATGTCAC+CGG | 0.560650 | 7_4:-5676968 | Msa1136980:CDS |
| CAAAGATTTGCCTTGAGAGA+GGG | 0.560920 | 7_4:-5676649 | Msa1136980:CDS |
| GGTGGCAGAACAGTTGGTGC+AGG | 0.561816 | 7_4:-5676628 | Msa1136980:CDS |
| TATGCTCATGTTGACTGCCC+TGG | 0.562571 | 7_4:-5679973 | Msa1136980:CDS |
| GGACGAGGAACAGTTGCTAC+TGG | 0.563419 | 7_4:-5677774 | Msa1136980:CDS |
| TGTTCTGCCACCCTCTCTCA+AGG | 0.564153 | 7_4:+5676639 | None:intergenic |
| AAGAGGGATTACAATTGCTA+CGG | 0.564494 | 7_4:-5680225 | Msa1136980:intron |
| TGACCTTCTACAAGTTTCCA+GGG | 0.568787 | 7_4:-5678321 | Msa1136980:CDS |
| GTGCCTGTTCCACTTGAACC+AGG | 0.570193 | 7_4:-5676872 | Msa1136980:intron |
| CGTTCTGGTGAAAGTAGCCA+TGG | 0.573938 | 7_4:+5680600 | None:intergenic |
| ATGAAGTTTGAAACAAAATG+AGG | 0.576415 | 7_4:+5676262 | None:intergenic |
| GAGAGAAGTGTGGAATTGAG+AGG | 0.576888 | 7_4:+5680699 | None:intergenic |
| TTAGACACATTCACAACAAG+GGG | 0.579734 | 7_4:-5676560 | Msa1136980:three_prime_UTR |
| AATGAAACGAGATTTAGAGA+AGG | 0.583083 | 7_4:+5680853 | None:intergenic |
| TCCTCACAAAGGATGAGGGT+GGG | 0.587128 | 7_4:-5677033 | Msa1136980:CDS |
| TTGAGTATGAGACTGCGAAA+AGG | 0.587605 | 7_4:-5679999 | Msa1136980:CDS |
| TTGTAGGCCGGTGATAATGT+TGG | 0.587725 | 7_4:-5677324 | Msa1136980:intron |
| AATTGAGAGGAGAAGAGGAA+AGG | 0.587918 | 7_4:+5680712 | None:intergenic |
| TAACATAATCGGCATGTCCA+GGG | 0.589750 | 7_4:+5679956 | None:intergenic |
| CATGGATCTCCACCAAGGAA+TGG | 0.590261 | 7_4:+5680618 | None:intergenic |
| GACTGTTAACGTATAAAGAG+AGG | 0.594031 | 7_4:+5676332 | None:intergenic |
| GTCAGGAATGTATTCATCAA+CGG | 0.597205 | 7_4:+5678204 | None:intergenic |
| GAAAAGGTCATTGCTAAACC+CGG | 0.597744 | 7_4:-5677097 | Msa1136980:intron |
| TTTAGACACATTCACAACAA+GGG | 0.598088 | 7_4:-5676561 | Msa1136980:three_prime_UTR |
| ATATACCGACCTGGTTCAAG+TGG | 0.599617 | 7_4:+5676863 | None:intergenic |
| GCTACTGGTCGTGTTGAACA+AGG | 0.600283 | 7_4:-5677759 | Msa1136980:CDS |
| TGTAGGTGCTTGCTGATGAA+GGG | 0.600394 | 7_4:-5680301 | Msa1136980:intron |
| CGTCGGAACTATTGGACACG+TGG | 0.600647 | 7_4:-5680481 | Msa1136980:CDS |
| TGTCTTCACGTTTCAGACCA+CGG | 0.601798 | 7_4:+5677292 | None:intergenic |
| AGATTTGCCTTGAGAGAGGG+TGG | 0.603839 | 7_4:-5676646 | Msa1136980:CDS |
| TGCTTTACAAGGTACAAATG+AGG | 0.604944 | 7_4:-5678263 | Msa1136980:CDS |
| ATGATAGGGATATCATCCCC+TGG | 0.605677 | 7_4:+5678304 | None:intergenic |
| AACAAGGGGTTAGAAGCCCC+AGG | 0.612625 | 7_4:-5676546 | Msa1136980:three_prime_UTR |
| GGTGATTGCAGCAGTTAGTG+TGG | 0.612708 | 7_4:+5680446 | None:intergenic |
| AAGAAGACCAACATTATCAC+CGG | 0.614685 | 7_4:+5677317 | None:intergenic |
| ACAGCAGTAACATTGTCTCC+AGG | 0.616998 | 7_4:+5676908 | None:intergenic |
| ACTGGAGCTGCCCAAATGGA+CGG | 0.617245 | 7_4:-5678762 | Msa1136980:CDS |
| TCTCCACCAAGGAATGGAGG+AGG | 0.620202 | 7_4:+5680624 | None:intergenic |
| GGATCTCCACCAAGGAATGG+AGG | 0.622567 | 7_4:+5680621 | None:intergenic |
| GTCCTCACAAAGGATGAGGG+TGG | 0.622920 | 7_4:-5677034 | Msa1136980:CDS |
| GCCCACCCTCATCCTTTGTG+AGG | 0.631523 | 7_4:+5677032 | None:intergenic |
| TATGTCCTCACAAAGGATGA+GGG | 0.635467 | 7_4:-5677037 | Msa1136980:CDS |
| CATCAGGTGCAGATACAACA+AGG | 0.636841 | 7_4:+5678733 | None:intergenic |
| GACCTTCTACAAGTTTCCAG+GGG | 0.639890 | 7_4:-5678320 | Msa1136980:CDS |
| AATAGAATAGTCAGGTCCTG+GGG | 0.640833 | 7_4:+5676530 | None:intergenic |
| TGGGTAGCGTCATCGGTGAG+AGG | 0.643356 | 7_4:+5680652 | None:intergenic |
| AATGTTGGTCTTCTTCTCCG+TGG | 0.651935 | 7_4:-5677309 | Msa1136980:CDS |
| ACAAACCCTGTGATATTCAG+CGG | 0.672382 | 7_4:-5676501 | Msa1136980:three_prime_UTR |
| GTGAACGAGTGAGAGAAGTG+TGG | 0.678699 | 7_4:+5680689 | None:intergenic |
| AATTACCGCTGAATATCACA+GGG | 0.682416 | 7_4:+5676496 | None:intergenic |
| ATCGTAGAAATGAAGGTTTG+GGG | 0.683413 | 7_4:+5680791 | None:intergenic |
| ATAGTTCCGACGTTAACATG+AGG | 0.685603 | 7_4:+5680492 | None:intergenic |
| AGAGATATATGTCCTCACAA+AGG | 0.697518 | 7_4:-5677044 | Msa1136980:CDS |
| TCGTAGAAATGAAGGTTTGG+GGG | 0.700032 | 7_4:+5680792 | None:intergenic |
| GCAGTCCTCAAGTAAAACTG+AGG | 0.704069 | 7_4:+5676980 | None:intergenic |
| CTTGTAGAAATGGAGCTCCG+TGG | 0.705529 | 7_4:-5678485 | Msa1136980:intron |
| TGAAGGGAAAGCAAAAGCTG+TGG | 0.710762 | 7_4:-5680285 | Msa1136980:CDS |
| AGAAAGCCTCATGTTAACGT+CGG | 0.718585 | 7_4:-5680498 | Msa1136980:CDS |
| GGAGCTGCCCAAATGGACGG+TGG | 0.721733 | 7_4:-5678759 | Msa1136980:CDS |
| GTAGCCATGGATCTCCACCA+AGG | 0.736526 | 7_4:+5680613 | None:intergenic |
| AAACGTGAAGACATTCAGCG+TGG | 0.768476 | 7_4:-5677282 | Msa1136980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATTATTTTTTTTA+AGG | - | chr7_4:5679299-5679318 | Msa1136980:intron | 0.0% |
| !!! | TTTTTAATTATTTTTTTTAA+GGG | - | chr7_4:5679300-5679319 | Msa1136980:intron | 0.0% |
| !! | TAGAAATTAAATACATTTAT+TGG | + | chr7_4:5677194-5677213 | None:intergenic | 10.0% |
| !! | TTTAATTATAAATAATCCTT+GGG | + | chr7_4:5677414-5677433 | None:intergenic | 10.0% |
| !!! | TTAAAAACTCATTAATTTTT+AGG | + | chr7_4:5677811-5677830 | None:intergenic | 10.0% |
| !!! | AAGGTATTAAAAAAATAAAA+AGG | - | chr7_4:5678066-5678085 | Msa1136980:intron | 10.0% |
| !! | TTAACATCAAAACAATAAAT+CGG | + | chr7_4:5676695-5676714 | None:intergenic | 15.0% |
| !!! | TAATTGATTGTTTAATTTTC+AGG | - | chr7_4:5677067-5677086 | Msa1136980:CDS | 15.0% |
| !!! | TTTTGATGTTAAAATATGAT+TGG | - | chr7_4:5677281-5677300 | Msa1136980:CDS | 15.0% |
| !!! | AATTTTTAAGATTTATGAAG+CGG | - | chr7_4:5677375-5677394 | Msa1136980:intron | 15.0% |
| !! | CTTTAATTATAAATAATCCT+TGG | + | chr7_4:5677415-5677434 | None:intergenic | 15.0% |
| !! | CAAGGATTATTTATAATTAA+AGG | - | chr7_4:5677413-5677432 | Msa1136980:intron | 15.0% |
| !!! | GATTTGATTAAGTTTTATTT+TGG | - | chr7_4:5677499-5677518 | Msa1136980:intron | 15.0% |
| !! | TATTAAAATTGAAAATGCAA+AGG | - | chr7_4:5677989-5678008 | Msa1136980:intron | 15.0% |
| !!! | TTTTTAATCATTAATTGACA+CGG | - | chr7_4:5679086-5679105 | Msa1136980:intron | 15.0% |
| !!! | TTATATATTTTATTTGCTGT+TGG | - | chr7_4:5679497-5679516 | Msa1136980:intron | 15.0% |
| !!! | ATTAATGTTTTATTCTTGTT+TGG | - | chr7_4:5679525-5679544 | Msa1136980:intron | 15.0% |
| !! | TAGTGTATATTAAACTAATA+TGG | - | chr7_4:5679737-5679756 | Msa1136980:intron | 15.0% |
| !!! | TTTTATTAAAAAGGACAATA+AGG | - | chr7_4:5680286-5680305 | Msa1136980:CDS | 15.0% |
| !!! | ACTTGTTATTTTATTTTACA+GGG | - | chr7_4:5680423-5680442 | Msa1136980:intron | 15.0% |
| !!! | TAAAATTTTTAAGTGAAGTG+AGG | - | chr7_4:5676716-5676735 | Msa1136980:intron | 20.0% |
| !!! | ATTGATTGATTTGATTTTGT+AGG | - | chr7_4:5676777-5676796 | Msa1136980:intron | 20.0% |
| !! | AAACCTTACTTTAACATAAT+CGG | + | chr7_4:5677153-5677172 | None:intergenic | 20.0% |
| !! | GGATTATTTATAATTAAAGG+TGG | - | chr7_4:5677416-5677435 | Msa1136980:intron | 20.0% |
| !! | TTATTTATAATTAAAGGTGG+TGG | - | chr7_4:5677419-5677438 | Msa1136980:CDS | 20.0% |
| !! | AATTCTCAATATTGTCAATT+TGG | - | chr7_4:5677944-5677963 | Msa1136980:intron | 20.0% |
| !! | ATTCTCAATATTGTCAATTT+GGG | - | chr7_4:5677945-5677964 | Msa1136980:intron | 20.0% |
| !!! | TTTTCAATTTTAATAGAGGA+TGG | + | chr7_4:5677984-5678003 | None:intergenic | 20.0% |
| !!! | TGCATTTTCAATTTTAATAG+AGG | + | chr7_4:5677988-5678007 | None:intergenic | 20.0% |
| !!! | TTTTAATACCTTACACATTA+TGG | + | chr7_4:5678058-5678077 | None:intergenic | 20.0% |
| !!! | TATATTTGTCTTCTTTTATG+AGG | - | chr7_4:5678190-5678209 | Msa1136980:CDS | 20.0% |
| !!! | AACAATAAATGCAAACTTTT+AGG | - | chr7_4:5678456-5678475 | Msa1136980:intron | 20.0% |
| !! | TTCAAAATTTAACAATTACG+AGG | + | chr7_4:5678718-5678737 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTAATCATCTATC+TGG | - | chr7_4:5678742-5678761 | Msa1136980:CDS | 20.0% |
| !!! | AAAGGCCATTTTAAAATTAA+TGG | - | chr7_4:5678865-5678884 | Msa1136980:intron | 20.0% |
| !!! | ATAACCATTTTAACATTTTC+TGG | + | chr7_4:5680166-5680185 | None:intergenic | 20.0% |
| !! | ATTGCAACATATGAAAAAAT+GGG | + | chr7_4:5680342-5680361 | None:intergenic | 20.0% |
| !! | CTGTAAAATAAAATAACAAG+TGG | + | chr7_4:5680424-5680443 | None:intergenic | 20.0% |
| !!! | CACTTGTTATTTTATTTTAC+AGG | - | chr7_4:5680422-5680441 | Msa1136980:intron | 20.0% |
| !!! | ATCAAAAGCATGTTTTTTTT+AGG | + | chr7_4:5680697-5680716 | None:intergenic | 20.0% |
| !!! | CATATTATTTTTCATAAAGC+AGG | + | chr7_4:5680734-5680753 | None:intergenic | 20.0% |
| !!! | CATCCTTGTTTGTTTTTTTA+TGG | - | chr7_4:5677035-5677054 | Msa1136980:CDS | 25.0% |
| ! | TTGCCATAAAAAAACAAACA+AGG | + | chr7_4:5677041-5677060 | None:intergenic | 25.0% |
| ! | GTTAAAGTAAGGTTTACATT+TGG | - | chr7_4:5677158-5677177 | Msa1136980:intron | 25.0% |
| !!! | TTTACTGTTTTTTGACCTAT+TGG | - | chr7_4:5677236-5677255 | Msa1136980:intron | 25.0% |
| !!! | TTTTTTGACCTATTGGAAAT+AGG | - | chr7_4:5677243-5677262 | Msa1136980:intron | 25.0% |
| ! | TTAATCAAATCTCTATGACA+TGG | + | chr7_4:5677490-5677509 | None:intergenic | 25.0% |
| !!! | TTAAGTTTTATTTTGGTCGT+CGG | - | chr7_4:5677506-5677525 | Msa1136980:intron | 25.0% |
| ! | TATATATACACCGAACATTA+TGG | - | chr7_4:5677839-5677858 | Msa1136980:intron | 25.0% |
| ! | AATTCTAACCATAATGTGTA+AGG | - | chr7_4:5678047-5678066 | Msa1136980:intron | 25.0% |
| !! | TTTTTGCAGAATATGATTAC+TGG | - | chr7_4:5678315-5678334 | Msa1136980:CDS | 25.0% |
| ! | TATTTGTACATGAATTGTAC+AGG | - | chr7_4:5678519-5678538 | Msa1136980:CDS | 25.0% |
| !!! | GGCATCCATTAATTTTAAAA+TGG | + | chr7_4:5678873-5678892 | None:intergenic | 25.0% |
| ! | ATTGAGAATACATCTTCAAT+GGG | + | chr7_4:5678950-5678969 | None:intergenic | 25.0% |
| ! | AATTGAGAATACATCTTCAA+TGG | + | chr7_4:5678951-5678970 | None:intergenic | 25.0% |
| ! | TAAGATAAAAAAAGAACCCA+TGG | + | chr7_4:5678985-5679004 | None:intergenic | 25.0% |
| ! | TCGTATTTAATTCAATGAGT+TGG | + | chr7_4:5679023-5679042 | None:intergenic | 25.0% |
| !!! | ATTATTTTTTTTAAGGGACG+AGG | - | chr7_4:5679306-5679325 | Msa1136980:intron | 25.0% |
| !!! | TTTTATTCTTGTTTGGACAT+TGG | - | chr7_4:5679532-5679551 | Msa1136980:intron | 25.0% |
| !! | TATGGATTTTCACATTTTGT+AGG | - | chr7_4:5679755-5679774 | Msa1136980:intron | 25.0% |
| ! | CATTGCAACATATGAAAAAA+TGG | + | chr7_4:5680343-5680362 | None:intergenic | 25.0% |
| ! | AATAAATTCAACCTATGATG+AGG | + | chr7_4:5680370-5680389 | None:intergenic | 25.0% |
| !!! | AACTGAGTAAATTTTAGAGA+AGG | - | chr7_4:5680627-5680646 | Msa1136980:CDS | 25.0% |
| !! | ATGAAGTTTGAAACAAAATG+AGG | + | chr7_4:5680836-5680855 | None:intergenic | 25.0% |
| AATCGTAGAAATGAAGGTTT+GGG | + | chr7_4:5676308-5676327 | None:intergenic | 30.0% | |
| !! | TTTTAAGTGAAGTGAGGATT+TGG | - | chr7_4:5676722-5676741 | Msa1136980:intron | 30.0% |
| !! | ATTTGGTGTTGGGTTAATTA+GGG | - | chr7_4:5676739-5676758 | Msa1136980:intron | 30.0% |
| !!! | TGCGTTTTGAGATTAATTTG+TGG | - | chr7_4:5676935-5676954 | Msa1136980:CDS | 30.0% |
| TTATAAACCTAGCACTGTAA+AGG | - | chr7_4:5676965-5676984 | Msa1136980:CDS | 30.0% | |
| TATAAACCTAGCACTGTAAA+GGG | - | chr7_4:5676966-5676985 | Msa1136980:CDS | 30.0% | |
| ! | GACAAAAAGTTTTACACTGT+CGG | - | chr7_4:5677010-5677029 | Msa1136980:CDS | 30.0% |
| ! | ATGCCGATTATGTTAAAGTA+AGG | - | chr7_4:5677147-5677166 | Msa1136980:intron | 30.0% |
| TCTCAATACCTATTTCCAAT+AGG | + | chr7_4:5677254-5677273 | None:intergenic | 30.0% | |
| GGAATGAGCTCAAATAATTT+AGG | - | chr7_4:5677440-5677459 | Msa1136980:CDS | 30.0% | |
| TGGAAATAAAATGAGCATAG+CGG | - | chr7_4:5677597-5677616 | Msa1136980:intron | 30.0% | |
| ATATCAACAGAATACCTACT+TGG | + | chr7_4:5678428-5678447 | None:intergenic | 30.0% | |
| AAGTAGGTATTCTGTTGATA+TGG | - | chr7_4:5678427-5678446 | Msa1136980:intron | 30.0% | |
| ! | TTTAAAAAGCACACAAGAGA+TGG | + | chr7_4:5678553-5678572 | None:intergenic | 30.0% |
| GTTCATTCTTATCATGAAGA+GGG | + | chr7_4:5678673-5678692 | None:intergenic | 30.0% | |
| TGAAGATGTATTCTCAATTC+AGG | - | chr7_4:5678952-5678971 | Msa1136980:intron | 30.0% | |
| GTATTCTCAATTCAGGTAAA+AGG | - | chr7_4:5678959-5678978 | Msa1136980:intron | 30.0% | |
| CATTGAATTAAATACGAGCT+CGG | - | chr7_4:5679026-5679045 | Msa1136980:intron | 30.0% | |
| !! | TTACAGTACATGTTAGTCTT+GGG | - | chr7_4:5679060-5679079 | Msa1136980:intron | 30.0% |
| TATTGAATAGATGCTGCATT+GGG | + | chr7_4:5679112-5679131 | None:intergenic | 30.0% | |
| ATATTGAATAGATGCTGCAT+TGG | + | chr7_4:5679113-5679132 | None:intergenic | 30.0% | |
| AGCATCTATTCAATATCAGT+TGG | - | chr7_4:5679117-5679136 | Msa1136980:intron | 30.0% | |
| ACATTCTGGATATGAAATCA+AGG | + | chr7_4:5679262-5679281 | None:intergenic | 30.0% | |
| GAACAAGGAATCATCAAAAT+TGG | - | chr7_4:5679351-5679370 | Msa1136980:intron | 30.0% | |
| ! | ATGTTGATTGAGTCATTTAC+TGG | - | chr7_4:5679407-5679426 | Msa1136980:intron | 30.0% |
| ATAAATTCCTTGCATTGCAA+TGG | - | chr7_4:5679580-5679599 | Msa1136980:intron | 30.0% | |
| ! | TCCTAAAACTAAGTTTTTCC+TGG | - | chr7_4:5679607-5679626 | Msa1136980:intron | 30.0% |
| !! | ACCAGGAAAAACTTAGTTTT+AGG | + | chr7_4:5679611-5679630 | None:intergenic | 30.0% |
| ! | AAAACTAAGTTTTTCCTGGT+AGG | - | chr7_4:5679611-5679630 | Msa1136980:intron | 30.0% |
| ! | AAACTAAGTTTTTCCTGGTA+GGG | - | chr7_4:5679612-5679631 | Msa1136980:intron | 30.0% |
| GTTGCCAGAAAATGTTAAAA+TGG | - | chr7_4:5680159-5680178 | Msa1136980:intron | 30.0% | |
| AATGTTAAAATGGTTATGCC+TGG | - | chr7_4:5680169-5680188 | Msa1136980:intron | 30.0% | |
| CATTAAATTATATACCGACC+TGG | + | chr7_4:5680244-5680263 | None:intergenic | 30.0% | |
| GGTCGGTATATAATTTAATG+AGG | - | chr7_4:5680244-5680263 | Msa1136980:CDS | 30.0% | |
| ! | TTTTAGACACATTCACAACA+AGG | - | chr7_4:5680533-5680552 | Msa1136980:intron | 30.0% |
| TTTAGACACATTCACAACAA+GGG | - | chr7_4:5680534-5680553 | Msa1136980:intron | 30.0% | |
| ! | GTGTTTTCAATAGAATAGTC+AGG | + | chr7_4:5680576-5680595 | None:intergenic | 30.0% |
| ATCGTAGAAATGAAGGTTTG+GGG | + | chr7_4:5676307-5676326 | None:intergenic | 35.0% | |
| GAATCGTAGAAATGAAGGTT+TGG | + | chr7_4:5676309-5676328 | None:intergenic | 35.0% | |
| ATTTCTACGATTCGCTTCAA+TGG | - | chr7_4:5676316-5676335 | Msa1136980:three_prime_UTR | 35.0% | |
| TTAGAGAGAGAATTACGTTC+TGG | + | chr7_4:5676513-5676532 | None:intergenic | 35.0% | |
| GAGAAATCGAATACTTACTC+TGG | + | chr7_4:5676673-5676692 | None:intergenic | 35.0% | |
| !! | GATTTGGTGTTGGGTTAATT+AGG | - | chr7_4:5676738-5676757 | Msa1136980:intron | 35.0% |
| TTGGGTTAATTAGGGTTTAG+AGG | - | chr7_4:5676747-5676766 | Msa1136980:intron | 35.0% | |
| GGCGTTTGATGAAATTGATA+AGG | - | chr7_4:5676831-5676850 | Msa1136980:intron | 35.0% | |
| AAGAGGGATTACAATTGCTA+CGG | - | chr7_4:5676870-5676889 | Msa1136980:intron | 35.0% | |
| ATAAACCTAGCACTGTAAAG+GGG | - | chr7_4:5676967-5676986 | Msa1136980:CDS | 35.0% | |
| ! | ATTAGCTTAATGACGCAAGA+TGG | - | chr7_4:5677349-5677368 | Msa1136980:intron | 35.0% |
| !! | CGGTTGAATATTTTTACCCA+AGG | - | chr7_4:5677395-5677414 | Msa1136980:intron | 35.0% |
| TAAAAGGAGAGGATTGTGTT+AGG | + | chr7_4:5677535-5677554 | None:intergenic | 35.0% | |
| GTAGTAAGACTTGACAAGAT+AGG | - | chr7_4:5677644-5677663 | Msa1136980:intron | 35.0% | |
| AGACTTGACAAGATAGGATT+AGG | - | chr7_4:5677650-5677669 | Msa1136980:intron | 35.0% | |
| TATCTACTCTCCTTACTCTA+CGG | + | chr7_4:5677742-5677761 | None:intergenic | 35.0% | |
| AAGGAGAGTAGATAAGATGA+AGG | - | chr7_4:5677748-5677767 | Msa1136980:CDS | 35.0% | |
| AGGAGAGTAGATAAGATGAA+GGG | - | chr7_4:5677749-5677768 | Msa1136980:CDS | 35.0% | |
| CAATAAGTATGATGGCTACA+TGG | + | chr7_4:5677876-5677895 | None:intergenic | 35.0% | |
| GTAGCCATCATACTTATTGT+TGG | - | chr7_4:5677877-5677896 | Msa1136980:intron | 35.0% | |
| CCATCATACTTATTGTTGGT+GGG | - | chr7_4:5677881-5677900 | Msa1136980:intron | 35.0% | |
| ! | ATTGTTGGTGGGATAAGAAT+CGG | - | chr7_4:5677892-5677911 | Msa1136980:intron | 35.0% |
| AGCATGCCTTAATGTCTTAT+CGG | - | chr7_4:5678160-5678179 | Msa1136980:CDS | 35.0% | |
| AAACACCCGATAAGACATTA+AGG | + | chr7_4:5678169-5678188 | None:intergenic | 35.0% | |
| ! | TCCTCATCAAATAGTGTTGA+TGG | + | chr7_4:5678241-5678260 | None:intergenic | 35.0% |
| !! | AGAATGTGCTCTTTAGTTTG+AGG | + | chr7_4:5678396-5678415 | None:intergenic | 35.0% |
| TGTACATGAATTGTACAGGT+TGG | - | chr7_4:5678523-5678542 | Msa1136980:CDS | 35.0% | |
| GTTGTTAGAGCTTGTAGAAA+TGG | - | chr7_4:5678600-5678619 | Msa1136980:intron | 35.0% | |
| CTTATCATGAAGAGGGAAAA+GGG | + | chr7_4:5678666-5678685 | None:intergenic | 35.0% | |
| TCTTATCATGAAGAGGGAAA+AGG | + | chr7_4:5678667-5678686 | None:intergenic | 35.0% | |
| GGTTCATTCTTATCATGAAG+AGG | + | chr7_4:5678674-5678693 | None:intergenic | 35.0% | |
| GATGATATCCCTATCATTAG+AGG | - | chr7_4:5678797-5678816 | Msa1136980:intron | 35.0% | |
| ATGCTGAACCTCTAATGATA+GGG | + | chr7_4:5678808-5678827 | None:intergenic | 35.0% | |
| AATGCTGAACCTCTAATGAT+AGG | + | chr7_4:5678809-5678828 | None:intergenic | 35.0% | |
| TGCTTTACAAGGTACAAATG+AGG | - | chr7_4:5678832-5678851 | Msa1136980:intron | 35.0% | |
| AAATGAGGAGATTGGAAGAA+AGG | - | chr7_4:5678847-5678866 | Msa1136980:intron | 35.0% | |
| GTCAGGAATGTATTCATCAA+CGG | + | chr7_4:5678894-5678913 | None:intergenic | 35.0% | |
| ! | CTTACAGTACATGTTAGTCT+TGG | - | chr7_4:5679059-5679078 | Msa1136980:intron | 35.0% |
| !! | TACAGTACATGTTAGTCTTG+GGG | - | chr7_4:5679061-5679080 | Msa1136980:intron | 35.0% |
| AGAGACAACAATGTTTGTCA+AGG | + | chr7_4:5679151-5679170 | None:intergenic | 35.0% | |
| !! | CAAAATTGGTGATGAAGTTG+AGG | - | chr7_4:5679365-5679384 | Msa1136980:intron | 35.0% |
| CTTTCAGTATATTAAGCACG+AGG | + | chr7_4:5679463-5679482 | None:intergenic | 35.0% | |
| TGAGATGTTCAAGAAGATGT+TGG | - | chr7_4:5679665-5679684 | Msa1136980:intron | 35.0% | |
| TTCAAGAAGATGTTGGATCA+AGG | - | chr7_4:5679672-5679691 | Msa1136980:intron | 35.0% | |
| ! | GATTTTCACATTTTGTAGGC+CGG | - | chr7_4:5679759-5679778 | Msa1136980:intron | 35.0% |
| AAGAAGACCAACATTATCAC+CGG | + | chr7_4:5679781-5679800 | None:intergenic | 35.0% | |
| TGCAACAGTAACTAACAAAG+AGG | + | chr7_4:5679867-5679886 | None:intergenic | 35.0% | |
| !!! | GACGTTGTCTTGTTTTGAAA+AGG | - | chr7_4:5679982-5680001 | Msa1136980:CDS | 35.0% |
| TATCTCTGCTTCAAATCTCT+TGG | + | chr7_4:5680038-5680057 | None:intergenic | 35.0% | |
| AGAGATATATGTCCTCACAA+AGG | - | chr7_4:5680051-5680070 | Msa1136980:intron | 35.0% | |
| ! | ATAGACCTCAGTTTTACTTG+AGG | - | chr7_4:5680110-5680129 | Msa1136980:intron | 35.0% |
| TGCAATGTTATCCTCATCAT+AGG | - | chr7_4:5680356-5680375 | Msa1136980:intron | 35.0% | |
| TTAGACACATTCACAACAAG+GGG | - | chr7_4:5680535-5680554 | Msa1136980:intron | 35.0% | |
| AATTACCGCTGAATATCACA+GGG | + | chr7_4:5680602-5680621 | None:intergenic | 35.0% | |
| GACTGTTAACGTATAAAGAG+AGG | + | chr7_4:5680766-5680785 | None:intergenic | 35.0% | |
| TCGTAGAAATGAAGGTTTGG+GGG | + | chr7_4:5676306-5676325 | None:intergenic | 40.0% | |
| GAAGCGAATCGTAGAAATGA+AGG | + | chr7_4:5676314-5676333 | None:intergenic | 40.0% | |
| AATTGAGAGGAGAAGAGGAA+AGG | + | chr7_4:5676386-5676405 | None:intergenic | 40.0% | |
| GTGAGAGGTGATTGAGAAAT+CGG | + | chr7_4:5676431-5676450 | None:intergenic | 40.0% | |
| AGAAAGCCTCATGTTAACGT+CGG | - | chr7_4:5676597-5676616 | Msa1136980:exon | 40.0% | |
| ATAGTTCCGACGTTAACATG+AGG | + | chr7_4:5676606-5676625 | None:intergenic | 40.0% | |
| CATGTTAACGTCGGAACTAT+TGG | - | chr7_4:5676606-5676625 | Msa1136980:CDS | 40.0% | |
| !! | TGAAGTGAGGATTTGGTGTT+GGG | - | chr7_4:5676729-5676748 | Msa1136980:intron | 40.0% |
| CTCCTGAAGAGAAGAAAAGA+GGG | - | chr7_4:5676854-5676873 | Msa1136980:intron | 40.0% | |
| ! | ATCCCTCTTTTCTTCTCTTC+AGG | + | chr7_4:5676859-5676878 | None:intergenic | 40.0% |
| GGATTACAATTGCTACGGTT+CGG | - | chr7_4:5676875-5676894 | Msa1136980:CDS | 40.0% | |
| TAAACCTAGCACTGTAAAGG+GGG | - | chr7_4:5676968-5676987 | Msa1136980:CDS | 40.0% | |
| TTGAGTATGAGACTGCGAAA+AGG | - | chr7_4:5677096-5677115 | Msa1136980:intron | 40.0% | |
| TAACATAATCGGCATGTCCA+GGG | + | chr7_4:5677142-5677161 | None:intergenic | 40.0% | |
| TTAACATAATCGGCATGTCC+AGG | + | chr7_4:5677143-5677162 | None:intergenic | 40.0% | |
| !!! | ATTAGTTTTTTACCGCCCCA+AGG | + | chr7_4:5677576-5677595 | None:intergenic | 40.0% |
| GGGGCGGTAAAAAACTAATA+TGG | - | chr7_4:5677577-5677596 | Msa1136980:intron | 40.0% | |
| TCGACTTATCGTAGAAAAGC+TGG | - | chr7_4:5677674-5677693 | Msa1136980:intron | 40.0% | |
| ACTTATCGTAGAAAAGCTGG+TGG | - | chr7_4:5677677-5677696 | Msa1136980:intron | 40.0% | |
| GAGAAAATACCCGTAGAGTA+AGG | - | chr7_4:5677729-5677748 | Msa1136980:CDS | 40.0% | |
| ATCTACTCTCCTTACTCTAC+GGG | + | chr7_4:5677741-5677760 | None:intergenic | 40.0% | |
| TCAAACGACGCCATAATGTT+CGG | + | chr7_4:5677852-5677871 | None:intergenic | 40.0% | |
| GCCATCATACTTATTGTTGG+TGG | - | chr7_4:5677880-5677899 | Msa1136980:intron | 40.0% | |
| CCCACCAACAATAAGTATGA+TGG | + | chr7_4:5677884-5677903 | None:intergenic | 40.0% | |
| ! | TTTGCTGTGTCTCAGATAAC+AGG | - | chr7_4:5678111-5678130 | Msa1136980:intron | 40.0% |
| GCATGCCTTAATGTCTTATC+GGG | - | chr7_4:5678161-5678180 | Msa1136980:CDS | 40.0% | |
| GCCATCAACACTATTTGATG+AGG | - | chr7_4:5678237-5678256 | Msa1136980:CDS | 40.0% | |
| TTTGATGAGGAATGCTTCTG+CGG | - | chr7_4:5678250-5678269 | Msa1136980:CDS | 40.0% | |
| !! | TGCTCTTTAGTTTGAGGCAT+TGG | + | chr7_4:5678390-5678409 | None:intergenic | 40.0% |
| CCTTAGAAGCAAGGAAGTAA+CGG | + | chr7_4:5678486-5678505 | None:intergenic | 40.0% | |
| GAATGTTGACCTTAGAAGCA+AGG | + | chr7_4:5678495-5678514 | None:intergenic | 40.0% | |
| ! | TCTACAAGCTCTAACAACTC+TGG | + | chr7_4:5678598-5678617 | None:intergenic | 40.0% |
| TCTTAGAGAAAAACCCACCA+CGG | + | chr7_4:5678630-5678649 | None:intergenic | 40.0% | |
| ACTACTACAGGAAGTTACGA+AGG | + | chr7_4:5678695-5678714 | None:intergenic | 40.0% | |
| ACAATTACGAGGACTACTAC+AGG | + | chr7_4:5678707-5678726 | None:intergenic | 40.0% | |
| TTGACCTTCTACAAGTTTCC+AGG | - | chr7_4:5678773-5678792 | Msa1136980:CDS | 40.0% | |
| TGACCTTCTACAAGTTTCCA+GGG | - | chr7_4:5678774-5678793 | Msa1136980:CDS | 40.0% | |
| TCAGCATTGTCTGCTTTACA+AGG | - | chr7_4:5678821-5678840 | Msa1136980:intron | 40.0% | |
| CAAGGTACAAATGAGGAGAT+TGG | - | chr7_4:5678839-5678858 | Msa1136980:intron | 40.0% | |
| !! | TCAAGAAAGGCTTTTCAAGC+TGG | + | chr7_4:5678925-5678944 | None:intergenic | 40.0% |
| TCTTCAATGGGCATCAAGAA+AGG | + | chr7_4:5678938-5678957 | None:intergenic | 40.0% | |
| TCAATTCAGGTAAAAGGCCA+TGG | - | chr7_4:5678965-5678984 | Msa1136980:intron | 40.0% | |
| CAATTCAGGTAAAAGGCCAT+GGG | - | chr7_4:5678966-5678985 | Msa1136980:intron | 40.0% | |
| !! | TGGTGATGAAGTTGAGGTTT+TGG | - | chr7_4:5679371-5679390 | Msa1136980:intron | 40.0% |
| ! | GGTGATGAAGTTGAGGTTTT+GGG | - | chr7_4:5679372-5679391 | Msa1136980:intron | 40.0% |
| GAGGAATGACGAGAATTCAA+GGG | + | chr7_4:5679444-5679463 | None:intergenic | 40.0% | |
| !!! | CCAGTAACTGTTGTTTTCAG+AGG | + | chr7_4:5679642-5679661 | None:intergenic | 40.0% |
| ! | CCTCTGAAAACAACAGTTAC+TGG | - | chr7_4:5679639-5679658 | Msa1136980:intron | 40.0% |
| ACAAGACAACGTCAGTAAAG+TGG | + | chr7_4:5679975-5679994 | None:intergenic | 40.0% | |
| GAAAAGGTCATTGCTAAACC+CGG | - | chr7_4:5679998-5680017 | Msa1136980:CDS | 40.0% | |
| ATATGTCCTCACAAAGGATG+AGG | - | chr7_4:5680057-5680076 | Msa1136980:intron | 40.0% | |
| TATGTCCTCACAAAGGATGA+GGG | - | chr7_4:5680058-5680077 | Msa1136980:intron | 40.0% | |
| !! | TTCTGGCAACTCTACTTTTC+CGG | + | chr7_4:5680149-5680168 | None:intergenic | 40.0% |
| ATGCACTTTATGCTAGTGTG+TGG | - | chr7_4:5680390-5680409 | Msa1136980:intron | 40.0% | |
| CAAAGATTTGCCTTGAGAGA+GGG | - | chr7_4:5680446-5680465 | Msa1136980:CDS | 40.0% | |
| AATAGAATAGTCAGGTCCTG+GGG | + | chr7_4:5680568-5680587 | None:intergenic | 40.0% | |
| CAATAGAATAGTCAGGTCCT+GGG | + | chr7_4:5680569-5680588 | None:intergenic | 40.0% | |
| TCAATAGAATAGTCAGGTCC+TGG | + | chr7_4:5680570-5680589 | None:intergenic | 40.0% | |
| ACAAACCCTGTGATATTCAG+CGG | - | chr7_4:5680594-5680613 | Msa1136980:intron | 40.0% | |
| CAATTACCGCTGAATATCAC+AGG | + | chr7_4:5680603-5680622 | None:intergenic | 40.0% | |
| CTGTGATATTCAGCGGTAAT+TGG | - | chr7_4:5680601-5680620 | Msa1136980:CDS | 40.0% | |
| ACAGTCTGAATCGTAAGTGT+TGG | - | chr7_4:5680780-5680799 | Msa1136980:exon | 40.0% | |
| CAGTCTGAATCGTAAGTGTT+GGG | - | chr7_4:5680781-5680800 | Msa1136980:exon | 40.0% | |
| !!! | GAGGGTTTTAGGTTCAGAGA+TGG | + | chr7_4:5676279-5676298 | None:intergenic | 45.0% |
| TGTGGAATTGAGAGGAGAAG+AGG | + | chr7_4:5676391-5676410 | None:intergenic | 45.0% | |
| ! | GAGAGAAGTGTGGAATTGAG+AGG | + | chr7_4:5676399-5676418 | None:intergenic | 45.0% |
| AGGAATGGAGGAGGAAGAAT+GGG | + | chr7_4:5676465-5676484 | None:intergenic | 45.0% | |
| AAGGAATGGAGGAGGAAGAA+TGG | + | chr7_4:5676466-5676485 | None:intergenic | 45.0% | |
| ATTCTTCCTCCTCCATTCCT+TGG | - | chr7_4:5676465-5676484 | Msa1136980:three_prime_UTR | 45.0% | |
| ACTATTGGACACGTGGATCA+CGG | - | chr7_4:5676621-5676640 | Msa1136980:CDS | 45.0% | |
| !! | GTGAAGTGAGGATTTGGTGT+TGG | - | chr7_4:5676728-5676747 | Msa1136980:intron | 45.0% |
| ! | TTGTAGGTGCTTGCTGATGA+AGG | - | chr7_4:5676793-5676812 | Msa1136980:intron | 45.0% |
| ! | TGTAGGTGCTTGCTGATGAA+GGG | - | chr7_4:5676794-5676813 | Msa1136980:intron | 45.0% |
| TGAAGGGAAAGCAAAAGCTG+TGG | - | chr7_4:5676810-5676829 | Msa1136980:intron | 45.0% | |
| GCTCCTGAAGAGAAGAAAAG+AGG | - | chr7_4:5676853-5676872 | Msa1136980:intron | 45.0% | |
| CACTGTAAAGGGGGTTTGAT+TGG | - | chr7_4:5676977-5676996 | Msa1136980:CDS | 45.0% | |
| ! | CTCTCCTTTTATCCTCGCTT+GGG | - | chr7_4:5677544-5677563 | Msa1136980:intron | 45.0% |
| AAACTCAGCTTAGGTGGTCT+GGG | - | chr7_4:5677700-5677719 | Msa1136980:intron | 45.0% | |
| AAGGATACCACCGTCCATTT+GGG | + | chr7_4:5678346-5678365 | None:intergenic | 45.0% | |
| CATCAGGTGCAGATACAACA+AGG | + | chr7_4:5678365-5678384 | None:intergenic | 45.0% | |
| ! | CTTGTTGTATCTGCACCTGA+TGG | - | chr7_4:5678363-5678382 | Msa1136980:intron | 45.0% |
| !! | ATTCTTCTAGCTCGCCAAGT+AGG | - | chr7_4:5678411-5678430 | Msa1136980:intron | 45.0% |
| CCGTTACTTCCTTGCTTCTA+AGG | - | chr7_4:5678483-5678502 | Msa1136980:intron | 45.0% | |
| TCATGAAGAGGGAAAAGGGT+GGG | + | chr7_4:5678662-5678681 | None:intergenic | 45.0% | |
| ATCATGAAGAGGGAAAAGGG+TGG | + | chr7_4:5678663-5678682 | None:intergenic | 45.0% | |
| GACCTTCTACAAGTTTCCAG+GGG | - | chr7_4:5678775-5678794 | Msa1136980:intron | 45.0% | |
| ATCCCCTGGAAACTTGTAGA+AGG | + | chr7_4:5678780-5678799 | None:intergenic | 45.0% | |
| ATGATAGGGATATCATCCCC+TGG | + | chr7_4:5678794-5678813 | None:intergenic | 45.0% | |
| AAGCAGCAGACATGACATTC+TGG | + | chr7_4:5679276-5679295 | None:intergenic | 45.0% | |
| !!! | TGAGGTTTTGGGTATGACAC+AGG | - | chr7_4:5679383-5679402 | Msa1136980:intron | 45.0% |
| CGAGGAATGACGAGAATTCA+AGG | + | chr7_4:5679445-5679464 | None:intergenic | 45.0% | |
| GGAAACACCATTGCAATGCA+AGG | + | chr7_4:5679590-5679609 | None:intergenic | 45.0% | |
| ! | CTAAGTTTTTCCTGGTAGGG+TGG | - | chr7_4:5679615-5679634 | Msa1136980:intron | 45.0% |
| GAAGATGTTGGATCAAGGAC+AGG | - | chr7_4:5679677-5679696 | Msa1136980:intron | 45.0% | |
| ! | TTGTAGGCCGGTGATAATGT+TGG | - | chr7_4:5679771-5679790 | Msa1136980:intron | 45.0% |
| !! | AATGTTGGTCTTCTTCTCCG+TGG | - | chr7_4:5679786-5679805 | Msa1136980:intron | 45.0% |
| TGTCTTCACGTTTCAGACCA+CGG | + | chr7_4:5679806-5679825 | None:intergenic | 45.0% | |
| AAACGTGAAGACATTCAGCG+TGG | - | chr7_4:5679813-5679832 | Msa1136980:intron | 45.0% | |
| ! | TTGGATGCTTTTGTAGCACC+GGG | + | chr7_4:5680019-5680038 | None:intergenic | 45.0% |
| ! | CTTGGATGCTTTTGTAGCAC+CGG | + | chr7_4:5680020-5680039 | None:intergenic | 45.0% |
| GCAGTCCTCAAGTAAAACTG+AGG | + | chr7_4:5680118-5680137 | None:intergenic | 45.0% | |
| ACAGCAGTAACATTGTCTCC+AGG | + | chr7_4:5680190-5680209 | None:intergenic | 45.0% | |
| ATATACCGACCTGGTTCAAG+TGG | + | chr7_4:5680235-5680254 | None:intergenic | 45.0% | |
| GCAAAGATTTGCCTTGAGAG+AGG | - | chr7_4:5680445-5680464 | Msa1136980:CDS | 45.0% | |
| !!! | TTTTTTTTCTTTTATTAAAA+AGG | - | chr7_4:5680277-5680296 | Msa1136980:CDS | 5.0% |
| GTGAACGAGTGAGAGAAGTG+TGG | + | chr7_4:5676409-5676428 | None:intergenic | 50.0% | |
| GGAAGAATGGGTAGCGTCAT+CGG | + | chr7_4:5676453-5676472 | None:intergenic | 50.0% | |
| CATGGATCTCCACCAAGGAA+TGG | + | chr7_4:5676480-5676499 | None:intergenic | 50.0% | |
| CATTCCTTGGTGGAGATCCA+TGG | - | chr7_4:5676478-5676497 | Msa1136980:three_prime_UTR | 50.0% | |
| CGTTCTGGTGAAAGTAGCCA+TGG | + | chr7_4:5676498-5676517 | None:intergenic | 50.0% | |
| GGTGATTGCAGCAGTTAGTG+TGG | + | chr7_4:5676652-5676671 | None:intergenic | 50.0% | |
| CAAACCCCCTTTACAGTGCT+AGG | + | chr7_4:5676975-5676994 | None:intergenic | 50.0% | |
| ! | TATGCTCATGTTGACTGCCC+TGG | - | chr7_4:5677122-5677141 | Msa1136980:intron | 50.0% |
| CCAAGCGAGGATAAAAGGAG+AGG | + | chr7_4:5677546-5677565 | None:intergenic | 50.0% | |
| ! | CCTCTCCTTTTATCCTCGCT+TGG | - | chr7_4:5677543-5677562 | Msa1136980:intron | 50.0% |
| ! | CCTTTTATCCTCGCTTGGGA+CGG | - | chr7_4:5677548-5677567 | Msa1136980:intron | 50.0% |
| AGCTGGTGGAAACTCAGCTT+AGG | - | chr7_4:5677691-5677710 | Msa1136980:intron | 50.0% | |
| TGGTGGAAACTCAGCTTAGG+TGG | - | chr7_4:5677694-5677713 | Msa1136980:intron | 50.0% | |
| GAAACTCAGCTTAGGTGGTC+TGG | - | chr7_4:5677699-5677718 | Msa1136980:intron | 50.0% | |
| GATTACTGGAGCTGCCCAAA+TGG | - | chr7_4:5678329-5678348 | Msa1136980:CDS | 50.0% | |
| CAAGGATACCACCGTCCATT+TGG | + | chr7_4:5678347-5678366 | None:intergenic | 50.0% | |
| !! | GTTTGAGGCATTGGTCCATC+AGG | + | chr7_4:5678381-5678400 | None:intergenic | 50.0% |
| CTTGTAGAAATGGAGCTCCG+TGG | - | chr7_4:5678610-5678629 | Msa1136980:intron | 50.0% | |
| TAGAAATGGAGCTCCGTGGT+GGG | - | chr7_4:5678614-5678633 | Msa1136980:intron | 50.0% | |
| !! | GCTTTTCAAGCTGGCGAACA+GGG | + | chr7_4:5678916-5678935 | None:intergenic | 50.0% |
| GCTACTGGTCGTGTTGAACA+AGG | - | chr7_4:5679336-5679355 | Msa1136980:intron | 50.0% | |
| TGAAGACATTCAGCGTGGTC+AGG | - | chr7_4:5679818-5679837 | Msa1136980:intron | 50.0% | |
| TCCTCACAAAGGATGAGGGT+GGG | - | chr7_4:5680062-5680081 | Msa1136980:intron | 50.0% | |
| TTGAGGACTGCTGATGTCAC+CGG | - | chr7_4:5680127-5680146 | Msa1136980:intron | 50.0% | |
| CTGTTCCACTTGAACCAGGT+CGG | - | chr7_4:5680227-5680246 | Msa1136980:CDS | 50.0% | |
| AGATTTGCCTTGAGAGAGGG+TGG | - | chr7_4:5680449-5680468 | Msa1136980:CDS | 50.0% | |
| ! | TTGGGGGCGATGAGGGTTTT+AGG | + | chr7_4:5676290-5676309 | None:intergenic | 55.0% |
| TGAAGGTTTGGGGGCGATGA+GGG | + | chr7_4:5676297-5676316 | None:intergenic | 55.0% | |
| ATGAAGGTTTGGGGGCGATG+AGG | + | chr7_4:5676298-5676317 | None:intergenic | 55.0% | |
| CTTCCTCCTCCATTCCTTGG+TGG | - | chr7_4:5676468-5676487 | Msa1136980:three_prime_UTR | 55.0% | |
| TCTCCACCAAGGAATGGAGG+AGG | + | chr7_4:5676474-5676493 | None:intergenic | 55.0% | |
| GGATCTCCACCAAGGAATGG+AGG | + | chr7_4:5676477-5676496 | None:intergenic | 55.0% | |
| GTAGCCATGGATCTCCACCA+AGG | + | chr7_4:5676485-5676504 | None:intergenic | 55.0% | |
| CGTCGGAACTATTGGACACG+TGG | - | chr7_4:5676614-5676633 | Msa1136980:CDS | 55.0% | |
| CCGTCCCAAGCGAGGATAAA+AGG | + | chr7_4:5677551-5677570 | None:intergenic | 55.0% | |
| ACTGGAGCTGCCCAAATGGA+CGG | - | chr7_4:5678333-5678352 | Msa1136980:intron | 55.0% | |
| GTAGAAATGGAGCTCCGTGG+TGG | - | chr7_4:5678613-5678632 | Msa1136980:intron | 55.0% | |
| GAAGAGGGAAAAGGGTGGGA+AGG | + | chr7_4:5678658-5678677 | None:intergenic | 55.0% | |
| !! | GGCTTTTCAAGCTGGCGAAC+AGG | + | chr7_4:5678917-5678936 | None:intergenic | 55.0% |
| GGACGAGGAACAGTTGCTAC+TGG | - | chr7_4:5679321-5679340 | Msa1136980:intron | 55.0% | |
| TTTCAGAGGACCACCCTACC+AGG | + | chr7_4:5679628-5679647 | None:intergenic | 55.0% | |
| GTCCTCACAAAGGATGAGGG+TGG | - | chr7_4:5680061-5680080 | Msa1136980:intron | 55.0% | |
| GTGCCTGTTCCACTTGAACC+AGG | - | chr7_4:5680223-5680242 | Msa1136980:intron | 55.0% | |
| CGACCTGGTTCAAGTGGAAC+AGG | + | chr7_4:5680229-5680248 | None:intergenic | 55.0% | |
| TGTTCTGCCACCCTCTCTCA+AGG | + | chr7_4:5680459-5680478 | None:intergenic | 55.0% | |
| AGAGAGGGTGGCAGAACAGT+TGG | - | chr7_4:5680461-5680480 | Msa1136980:CDS | 55.0% | |
| ! | CAGAACAGTTGGTGCAGGTG+TGG | - | chr7_4:5680472-5680491 | Msa1136980:CDS | 55.0% |
| AACAAGGGGTTAGAAGCCCC+AGG | - | chr7_4:5680549-5680568 | Msa1136980:intron | 55.0% | |
| TGGGTAGCGTCATCGGTGAG+AGG | + | chr7_4:5676446-5676465 | None:intergenic | 60.0% | |
| GCTTAGGTGGTCTGGGCTTG+TGG | - | chr7_4:5677707-5677726 | Msa1136980:intron | 60.0% | |
| TCAAGCTGGCGAACAGGGTC+AGG | + | chr7_4:5678911-5678930 | None:intergenic | 60.0% | |
| GCCCACCCTCATCCTTTGTG+AGG | + | chr7_4:5680066-5680085 | None:intergenic | 60.0% | |
| ! | GGTGGCAGAACAGTTGGTGC+AGG | - | chr7_4:5680467-5680486 | Msa1136980:CDS | 60.0% |
| CTCGCTTGGGACGGAGCCTT+GGG | - | chr7_4:5677557-5677576 | Msa1136980:intron | 65.0% | |
| TCGCTTGGGACGGAGCCTTG+GGG | - | chr7_4:5677558-5677577 | Msa1136980:intron | 65.0% | |
| GGAGCTGCCCAAATGGACGG+TGG | - | chr7_4:5678336-5678355 | Msa1136980:intron | 65.0% | |
| CCAAGGCTCCGTCCCAAGCG+AGG | + | chr7_4:5677559-5677578 | None:intergenic | 70.0% | |
| CCTCGCTTGGGACGGAGCCT+TGG | - | chr7_4:5677556-5677575 | Msa1136980:intron | 70.0% | |
| CTTGGGACGGAGCCTTGGGG+CGG | - | chr7_4:5677561-5677580 | Msa1136980:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 5676244 | 5680873 | 5676244 | ID=Msa1136980;Name=Msa1136980 |
| chr7_4 | mRNA | 5676244 | 5680873 | 5676244 | ID=Msa1136980-mRNA-1;Parent=Msa1136980;Name=Msa1136980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=91|1|1|1|1|1|12|359|450 |
| chr7_4 | exon | 5676244 | 5676673 | 5676244 | ID=Msa1136980-mRNA-1:exon:1531;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5676873 | 5677113 | 5676873 | ID=Msa1136980-mRNA-1:exon:1530;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5677278 | 5677340 | 5677278 | ID=Msa1136980-mRNA-1:exon:1529;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5677419 | 5677484 | 5677419 | ID=Msa1136980-mRNA-1:exon:1528;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5677713 | 5677796 | 5677713 | ID=Msa1136980-mRNA-1:exon:1527;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5678144 | 5678349 | 5678144 | ID=Msa1136980-mRNA-1:exon:1526;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5678486 | 5678576 | 5678486 | ID=Msa1136980-mRNA-1:exon:1525;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5678689 | 5678793 | 5678689 | ID=Msa1136980-mRNA-1:exon:1524;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5679954 | 5680028 | 5679954 | ID=Msa1136980-mRNA-1:exon:1523;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5680226 | 5680318 | 5680226 | ID=Msa1136980-mRNA-1:exon:1522;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5680443 | 5680518 | 5680443 | ID=Msa1136980-mRNA-1:exon:1521;Parent=Msa1136980-mRNA-1 |
| chr7_4 | exon | 5680601 | 5680873 | 5680601 | ID=Msa1136980-mRNA-1:exon:1520;Parent=Msa1136980-mRNA-1 |
| chr7_4 | five_prime_UTR | 5680783 | 5680873 | 5680783 | ID=Msa1136980-mRNA-1:five_prime_utr;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5680601 | 5680782 | 5680601 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5680443 | 5680518 | 5680443 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5680226 | 5680318 | 5680226 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5679954 | 5680028 | 5679954 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5678689 | 5678793 | 5678689 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5678486 | 5678576 | 5678486 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5678144 | 5678349 | 5678144 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5677713 | 5677796 | 5677713 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5677419 | 5677484 | 5677419 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5677278 | 5677340 | 5677278 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5676873 | 5677113 | 5676873 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | CDS | 5676603 | 5676673 | 5676603 | ID=Msa1136980-mRNA-1:cds;Parent=Msa1136980-mRNA-1 |
| chr7_4 | three_prime_UTR | 5676244 | 5676602 | 5676244 | ID=Msa1136980-mRNA-1:three_prime_utr;Parent=Msa1136980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
