AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0698830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698830 MtrunA17_Chr4g0052291 99.764 423 1 0 1 423 1 423 0.0 880
Msa0698830 MtrunA17_Chr4g0036951 53.165 395 168 5 21 414 17 395 6.29e-142 410
Msa0698830 MtrunA17_Chr2g0299271 31.651 436 248 12 17 415 58 480 1.14e-61 207
Msa0698830 MtrunA17_Chr2g0330271 29.148 446 256 12 17 415 17 449 3.77e-50 176
Msa0698830 MtrunA17_Chr8g0377441 29.825 285 158 7 119 373 156 428 1.06e-30 123
Msa0698830 MtrunA17_Chr5g0406931 28.746 327 177 14 118 408 142 448 7.45e-25 105
Msa0698830 MtrunA17_Chr2g0283891 23.411 299 187 6 105 403 54 310 9.20e-19 86.7
Msa0698830 MtrunA17_Chr2g0283891 24.571 175 117 2 230 404 64 223 1.48e-11 65.1
Msa0698830 MtrunA17_Chr5g0401671 26.840 231 132 10 182 404 351 552 6.70e-15 76.6
Msa0698830 MtrunA17_Chr4g0053651 26.556 241 140 10 174 406 326 537 9.35e-15 76.3
Msa0698830 MtrunA17_Chr5g0401661 26.778 239 138 10 174 404 433 642 9.43e-15 76.3
Msa0698830 MtrunA17_Chr5g0447911 27.778 180 114 3 177 349 250 420 7.28e-13 70.1
Msa0698830 MtrunA17_Chr4g0004241 25.123 203 130 5 194 385 30 221 1.02e-12 70.1
Msa0698830 MtrunA17_Chr2g0281451 27.885 208 121 9 194 389 73 263 1.30e-12 70.1
Msa0698830 MtrunA17_Chr2g0281451 25.592 211 129 8 194 404 31 213 6.22e-11 64.7
Msa0698830 MtrunA17_Chr2g0331981 24.631 203 131 5 194 385 30 221 2.01e-12 69.3
Msa0698830 MtrunA17_Chr6g0448921 25.000 192 122 7 221 411 10 180 5.13e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698830 AT5G58230.1 88.942 416 46 0 1 416 1 416 0.0 776
Msa0698830 AT2G16780.1 53.555 422 164 8 2 414 5 403 3.28e-152 437
Msa0698830 AT4G35050.1 52.439 410 175 6 6 409 4 399 1.43e-147 426
Msa0698830 AT2G19520.1 32.353 442 240 13 17 415 64 489 1.53e-62 210
Msa0698830 AT4G29730.1 29.412 442 251 12 13 415 50 469 1.31e-55 191
Msa0698830 AT4G29730.3 29.008 393 225 11 13 373 50 420 6.79e-45 162
Msa0698830 AT4G29730.2 29.008 393 225 11 13 373 50 420 6.79e-45 162
Msa0698830 AT2G19540.1 29.375 320 187 9 119 408 153 463 6.87e-31 124
Msa0698830 AT1G29260.1 25.957 235 152 4 169 403 97 309 3.98e-17 82.4
Msa0698830 AT1G29260.1 28.000 175 111 2 230 404 63 222 6.30e-14 72.8
Msa0698830 AT1G52360.4 25.616 203 129 5 194 385 30 221 8.67e-13 70.9
Msa0698830 AT1G52360.1 25.616 203 129 5 194 385 30 221 8.67e-13 70.9
Msa0698830 AT1G52360.3 25.616 203 129 5 194 385 30 221 9.63e-13 70.9
Msa0698830 AT2G32950.2 25.941 239 157 8 114 347 241 464 1.20e-12 70.1
Msa0698830 AT1G11160.3 28.431 204 125 9 194 389 31 221 1.23e-12 70.5
Msa0698830 AT1G52360.2 25.616 203 129 5 194 385 74 265 1.35e-12 70.5
Msa0698830 AT2G32950.1 25.941 239 157 8 114 347 354 577 1.46e-12 70.1
Msa0698830 AT1G11160.1 26.000 250 134 8 184 389 21 263 1.61e-12 70.1
Msa0698830 AT3G63460.3 26.923 182 117 6 174 346 118 292 1.67e-12 70.1
Msa0698830 AT3G63460.2 26.923 182 117 6 174 346 118 292 1.72e-12 70.1
Msa0698830 AT3G63460.1 26.923 182 117 6 174 346 118 292 1.78e-12 70.1
Msa0698830 AT1G11160.4 26.000 250 134 8 184 389 21 263 2.02e-12 69.7
Msa0698830 AT1G11160.2 26.000 250 134 8 184 389 21 263 2.04e-12 69.7
Msa0698830 AT3G49660.1 29.224 219 138 9 163 372 6 216 4.01e-12 67.4
Msa0698830 AT5G23430.3 25.543 184 116 6 221 404 10 172 4.78e-12 68.6
Msa0698830 AT5G23430.2 25.543 184 116 6 221 404 10 172 4.78e-12 68.6
Msa0698830 AT5G08390.1 25.000 192 122 7 221 411 10 180 4.83e-12 68.6
Msa0698830 AT5G23430.1 25.543 184 116 6 221 404 10 172 4.87e-12 68.6
Msa0698830 AT3G15980.7 25.123 203 130 5 194 385 30 221 5.17e-12 68.6
Msa0698830 AT3G15980.1 25.123 203 130 5 194 385 30 221 5.58e-12 68.2
Msa0698830 AT3G15980.3 25.123 203 130 5 194 385 30 221 5.70e-12 68.2
Msa0698830 AT3G15980.6 25.123 203 130 5 194 385 30 221 5.70e-12 68.2
Msa0698830 AT3G15980.2 25.123 203 130 5 194 385 30 221 5.70e-12 68.2
Msa0698830 AT3G15980.4 25.123 203 130 5 194 385 30 221 5.70e-12 68.2
Msa0698830 AT3G15980.5 25.123 203 130 5 194 385 30 221 5.88e-12 68.2
Msa0698830 AT5G13480.2 24.286 280 165 12 127 402 136 372 3.59e-11 65.5
Msa0698830 AT5G13480.3 24.286 280 165 12 127 402 113 349 3.60e-11 65.5
Msa0698830 AT5G13480.1 24.286 280 165 12 127 402 125 361 3.62e-11 65.5
Msa0698830 AT5G13480.4 24.286 280 165 12 127 402 113 349 3.78e-11 65.5
Msa0698830 AT1G79990.1 24.631 203 131 5 194 385 30 221 4.51e-11 65.5
Msa0698830 AT1G79990.2 24.631 203 131 5 194 385 30 221 4.86e-11 65.5
Msa0698830 AT2G43770.1 26.160 237 143 10 170 404 45 251 5.48e-11 63.9

Find 115 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAGACAGTTTCATTCTT+TGG 0.185089 4_4:+69237215 None:intergenic
AACTGAGTTCAATTACATTA+AGG 0.220917 4_4:+69236174 None:intergenic
ATTTGTTTGTGGGATATTAA+TGG 0.257426 4_4:-69239362 Msa0698830:CDS
CTGTGCGAGCATGAGGTAAT+TGG 0.260060 4_4:+69239739 None:intergenic
AGGTTGAATGTTTGGGTCTA+AGG 0.261250 4_4:-69236138 Msa0698830:three_prime_UTR
CCAAGACAGTTTCATTCTTT+GGG 0.298461 4_4:+69237216 None:intergenic
CGTCCTGAAGTTGGAGGGTT+TGG 0.303486 4_4:-69239662 Msa0698830:CDS
GCATCAAGAGACTTATTCTT+AGG 0.319433 4_4:+69239335 None:intergenic
ATGATCAGTATTTGCTTGTA+TGG 0.322224 4_4:-69239144 Msa0698830:CDS
CCATCAATTGGAGGCTTAGA+AGG 0.322579 4_4:+69239494 None:intergenic
GGGGCCTGTGCTGACTGTTC+TGG 0.324266 4_4:+69236195 None:intergenic
CTTTCAATCCCTTCAATGAA+TGG 0.340735 4_4:-69237445 Msa0698830:CDS
CCTTCTAAGCCTCCAATTGA+TGG 0.346065 4_4:-69239494 Msa0698830:CDS
TTGAGGCATGAGTATTTGTT+TGG 0.347301 4_4:-69239178 Msa0698830:CDS
TTGTTATGCGTTGAGTCATT+AGG 0.350010 4_4:-69235992 Msa0698830:three_prime_UTR
TGTCCTCTTAACCTCAAATC+AGG 0.355268 4_4:+69239461 None:intergenic
AAGACAACATACTTCAAATA+TGG 0.358936 4_4:-69236257 Msa0698830:CDS
CATGGAACCCATGTGAAGAT+TGG 0.363420 4_4:-69236299 Msa0698830:CDS
ACTGAGTTCAATTACATTAA+GGG 0.365910 4_4:+69236175 None:intergenic
TGAAATATAGGTTGAATGTT+TGG 0.371631 4_4:-69236146 Msa0698830:three_prime_UTR
TCAACGAAGAATACAAAATC+TGG 0.373066 4_4:-69239919 Msa0698830:CDS
CTCAGTTTAGTGTGAAATAT+AGG 0.376554 4_4:-69236158 Msa0698830:three_prime_UTR
AGTATTTGTTTGGTTCTGTT+GGG 0.383674 4_4:-69239168 Msa0698830:CDS
ATTGTAGCTGTATTTCAATA+TGG 0.388934 4_4:-69236073 Msa0698830:three_prime_UTR
GTCTTGGCTTCTTGTTGTCT+TGG 0.391546 4_4:-69237200 Msa0698830:CDS
GTGAAGAAGTGAGGAAGTAG+TGG 0.394173 4_4:-69240088 None:intergenic
TGGCTTCTTGTTGTCTTGGT+AGG 0.395080 4_4:-69237196 Msa0698830:CDS
CAACCAAACCCTCCAACTTC+AGG 0.396221 4_4:+69239659 None:intergenic
AAACAAGGACATTTGCTTAG+TGG 0.397496 4_4:-69239401 Msa0698830:CDS
GGACATAATACTGAAGGTTA+TGG 0.401530 4_4:-69239443 Msa0698830:CDS
CCGGCGGGTTCAGTGCGATC+TGG 0.403346 4_4:+69239818 None:intergenic
AACCCTGATTTGAGGTTAAG+AGG 0.408019 4_4:-69239464 Msa0698830:CDS
CTGAAGGTTATGGTTTGTCT+TGG 0.425247 4_4:-69239433 Msa0698830:CDS
GGGTTACAACTTCCATCAAT+TGG 0.425575 4_4:+69239482 None:intergenic
TTTGTTTGTTAGGTTCATGA+AGG 0.438709 4_4:-69239226 Msa0698830:intron
GGCAAAATGCTTTCGTGCAC+AGG 0.440751 4_4:+69235875 None:intergenic
GAGTATTTGTTTGGTTCTGT+TGG 0.442494 4_4:-69239169 Msa0698830:CDS
TCTTGATGTGAAAAGTTCTC+AGG 0.447672 4_4:-69235947 Msa0698830:three_prime_UTR
GGAGGGTTTGGTTGTGCGAA+TGG 0.452217 4_4:-69239650 Msa0698830:CDS
TTGTGGGATCTGCGCAAGAT+TGG 0.469154 4_4:-69237386 Msa0698830:CDS
AGGAAGTAGTGGGATAGAGA+AGG 0.469360 4_4:-69240077 Msa0698830:five_prime_UTR
TGAGCAATGCAAGACTGAAC+AGG 0.469797 4_4:+69239094 None:intergenic
ACATCACATTTGAGAGAGCT+AGG 0.470373 4_4:-69240004 Msa0698830:five_prime_UTR
TCTTTGGGTTCCAGCCAACC+TGG 0.471969 4_4:+69237231 None:intergenic
GGAAGTAGTGGGATAGAGAA+GGG 0.472455 4_4:-69240076 Msa0698830:five_prime_UTR
GGACCATCTTCAGCATCCTC+TGG 0.473998 4_4:+69236375 None:intergenic
GAAATATAGGTTGAATGTTT+GGG 0.476064 4_4:-69236145 Msa0698830:three_prime_UTR
TGATGCTCAGATTTGTTTGT+GGG 0.482057 4_4:-69239372 Msa0698830:CDS
TGTGCGAGCATGAGGTAATT+GGG 0.482873 4_4:+69239740 None:intergenic
GAGGGTTTGGTTGTGCGAAT+GGG 0.487731 4_4:-69239649 Msa0698830:CDS
CGGACAAAACAGTGAAATTG+TGG 0.487959 4_4:-69237403 Msa0698830:CDS
CCCAAAGAATGAAACTGTCT+TGG 0.489287 4_4:-69237216 Msa0698830:CDS
GCAAAATATCCGACTTCTCA+TGG 0.491026 4_4:-69236317 Msa0698830:CDS
GATGACGATCGTCCTGAAGT+TGG 0.499636 4_4:-69239671 Msa0698830:CDS
AAGATGTGGCTTGGCATTTG+AGG 0.499952 4_4:-69239195 Msa0698830:CDS
AGCAACTATCCATTCATTGA+AGG 0.510302 4_4:+69237436 None:intergenic
ATGATGCTCAGATTTGTTTG+TGG 0.513746 4_4:-69239373 Msa0698830:CDS
AATGAATGGATAGTTGCTAC+TGG 0.517233 4_4:-69237431 Msa0698830:CDS
TGATGGTGTGGGATCTTAGC+AGG 0.518950 4_4:-69237169 Msa0698830:intron
TGATCAGTATTTGCTTGTAT+GGG 0.519134 4_4:-69239143 Msa0698830:CDS
ATGGAACCCATGTGAAGATT+GGG 0.525962 4_4:-69236298 Msa0698830:CDS
TTACAACTTCCATCAATTGG+AGG 0.527832 4_4:+69239485 None:intergenic
GATAGTTGCTACTGGTTCTA+CGG 0.527969 4_4:-69237423 Msa0698830:CDS
TTGTCTTGGTAGGAGACTGA+TGG 0.532965 4_4:-69237186 Msa0698830:CDS
ACAGCTACAATTGTGTAGAA+AGG 0.533467 4_4:+69236085 None:intergenic
TGAAGAAGTGAGGAAGTAGT+GGG 0.539371 4_4:-69240087 None:intergenic
TCATCACTCACGCTCTCGAA+TGG 0.541702 4_4:-69239865 Msa0698830:CDS
CTGAGTTCAATTACATTAAG+GGG 0.543271 4_4:+69236176 None:intergenic
GCAACTATCCATTCATTGAA+GGG 0.546007 4_4:+69237437 None:intergenic
TCACCAGAGGATGCTGAAGA+TGG 0.548104 4_4:-69236378 Msa0698830:CDS
GGACAAAACAGTGAAATTGT+GGG 0.548577 4_4:-69237402 Msa0698830:CDS
GGCCATCTCTCACCGTCGAA+TGG 0.548676 4_4:-69239844 Msa0698830:CDS
TACTAAGACGGTTAGTGCTG+AGG 0.555717 4_4:-69239543 Msa0698830:CDS
AGATTGGGTTGTTGCTAGTG+TGG 0.562356 4_4:-69236283 Msa0698830:CDS
ATTCAACAGATTAATCATGA+TGG 0.562715 4_4:-69239614 Msa0698830:CDS
CATCACATTTGAGAGAGCTA+GGG 0.567154 4_4:-69240003 Msa0698830:five_prime_UTR
GAAGTAGTGGGATAGAGAAG+GGG 0.568091 4_4:-69240075 Msa0698830:five_prime_UTR
GTTTGGTTGTGCGAATGGGA+AGG 0.569019 4_4:-69239645 Msa0698830:CDS
GACGATCGTCCTGAAGTTGG+AGG 0.569228 4_4:-69239668 Msa0698830:CDS
GTATTTGTTTGGTTCTGTTG+GGG 0.571264 4_4:-69239167 Msa0698830:CDS
CAATTACCTCATGCTCGCAC+AGG 0.571545 4_4:-69239738 Msa0698830:CDS
TTAGGTTCATGAAGGTGTTG+TGG 0.572025 4_4:-69239218 Msa0698830:intron
AGTAACAGCACGAATACAGA+TGG 0.573291 4_4:+69236108 None:intergenic
GTTGAACCTGTGCGAGCATG+AGG 0.573425 4_4:+69239732 None:intergenic
GTCCTCTTAACCTCAAATCA+GGG 0.573483 4_4:+69239462 None:intergenic
GAAGTTGTAACCCTGATTTG+AGG 0.574752 4_4:-69239472 Msa0698830:CDS
AGCCATTCGACGGTGAGAGA+TGG 0.578728 4_4:+69239842 None:intergenic
TTGGTAGGAGACTGATGGTG+TGG 0.580867 4_4:-69237181 Msa0698830:CDS
AAGTAGTGGGATAGAGAAGG+GGG 0.585061 4_4:-69240074 Msa0698830:five_prime_UTR
CTGGCATATCATCTTCGTCA+TGG 0.595465 4_4:+69236214 None:intergenic
TTTCGGAAGTGTGGGTCCCG+AGG 0.597109 4_4:+69239768 None:intergenic
TCTTGGAGTAAGTTTAAACA+AGG 0.601573 4_4:-69239416 Msa0698830:CDS
CCAGATCGCACTGAACCCGC+CGG 0.601917 4_4:-69239818 Msa0698830:CDS
TGGTAGGAGACTGATGGTGT+GGG 0.611927 4_4:-69237180 Msa0698830:CDS
GATGACGAGATCGTAGAGGA+AGG 0.612226 4_4:+69239883 None:intergenic
ATGTTACTTATGGCAATCAA+AGG 0.614738 4_4:+69237349 None:intergenic
ACATGGGTTCCATGAGAAGT+CGG 0.616608 4_4:+69236308 None:intergenic
ACAGATTAATCATGATGGTG+AGG 0.616848 4_4:-69239609 Msa0698830:CDS
GCAACAACCCAATCTTCACA+TGG 0.617675 4_4:+69236291 None:intergenic
CATACTTCAAATATGGCAGA+TGG 0.618787 4_4:-69236250 Msa0698830:CDS
ACGATCGTCCTGAAGTTGGA+GGG 0.619003 4_4:-69239667 Msa0698830:CDS
TGAAGGTGTTGTGGAAGATG+TGG 0.623313 4_4:-69239209 Msa0698830:CDS
TTAAGAGGACATAATACTGA+AGG 0.624264 4_4:-69239449 Msa0698830:CDS
GCAATCACAAAACTATTCTG+AGG 0.629163 4_4:+69239566 None:intergenic
ATGACGAGATCGTAGAGGAA+GGG 0.633340 4_4:+69239884 None:intergenic
TATGCCAGAACAGTCAGCAC+AGG 0.635935 4_4:-69236199 Msa0698830:CDS
GCGATCTGGAAGCCATTCGA+CGG 0.637412 4_4:+69239832 None:intergenic
AAAGAAGACGAAGAAATGAG+AGG 0.647955 4_4:-69239962 Msa0698830:CDS
GTGTTGTGGAAGATGTGGCT+TGG 0.652239 4_4:-69239204 Msa0698830:CDS
TTGCATTGCTCATTCAAGCG+AGG 0.660555 4_4:-69239083 Msa0698830:intron
TGAACAGGCTTAGTAACAGA+CGG 0.667956 4_4:+69239109 None:intergenic
TGACGAAGAGCAGTCACCAG+AGG 0.673679 4_4:-69236391 Msa0698830:CDS
ATGGTGAGGTTAATAGAGCG+AGG 0.684540 4_4:-69239595 Msa0698830:CDS
GAGTGATGACGAGATCGTAG+AGG 0.686206 4_4:+69239879 None:intergenic
CAACAACCCAATCTTCACAT+GGG 0.694803 4_4:+69236292 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATATAGAAAAATCTA+CGG + chr4_4:69238635-69238654 None:intergenic 10.0%
!! ATTTGTTTGTATATAATATA+TGG - chr4_4:69239232-69239251 Msa0698830:intron 10.0%
!! TTTGTTTGTATATAATATAT+GGG - chr4_4:69239233-69239252 Msa0698830:intron 10.0%
!!! TTTTATCTATGTTTAAATCT+AGG - chr4_4:69236902-69236921 Msa0698830:intron 15.0%
!!! TTTTACATTTGGTTTTTTTA+AGG - chr4_4:69236948-69236967 Msa0698830:intron 15.0%
!!! TTAATCTAGACAATTATTTT+TGG - chr4_4:69237050-69237069 Msa0698830:intron 15.0%
!!! TAGTTTTTTATGCTTTTTAT+AGG + chr4_4:69237890-69237909 None:intergenic 15.0%
!!! TTTTCTTTATATAATGACAT+TGG - chr4_4:69238464-69238483 Msa0698830:intron 15.0%
!!! TTATAAGCTCTTTTTACATT+TGG - chr4_4:69236937-69236956 Msa0698830:intron 20.0%
!!! TAAGGAAGTATAATTAGTTT+AGG - chr4_4:69236966-69236985 Msa0698830:intron 20.0%
!!! AAGGAAGTATAATTAGTTTA+GGG - chr4_4:69236967-69236986 Msa0698830:intron 20.0%
!!! ATAATAAGCTCTTTTACATT+TGG - chr4_4:69237277-69237296 Msa0698830:intron 20.0%
!!! TAATAAGCTCTTTTACATTT+GGG - chr4_4:69237278-69237297 Msa0698830:intron 20.0%
!!! CGCTTAATTTATTTTCATAT+TGG + chr4_4:69237652-69237671 None:intergenic 20.0%
!!! TAATATCACTATGTTTTGAT+GGG + chr4_4:69238108-69238127 None:intergenic 20.0%
!! TGATAATTGAAAACTAAACA+CGG - chr4_4:69238174-69238193 Msa0698830:intron 20.0%
!! TTAAAAAATTGACAATTGAG+AGG + chr4_4:69238974-69238993 None:intergenic 20.0%
!!! TTTTAACTTGAAACATTTGA+GGG + chr4_4:69239413-69239432 None:intergenic 20.0%
!!! ATTTTAACTTGAAACATTTG+AGG + chr4_4:69239414-69239433 None:intergenic 20.0%
!!! TGAACATAATTCTGAAAAAT+TGG - chr4_4:69239926-69239945 Msa0698830:CDS 20.0%
! ATTCAACAGATTAATCATGA+TGG - chr4_4:69236341-69236360 Msa0698830:CDS 25.0%
! ATTTGTTTGTGGGATATTAA+TGG - chr4_4:69236593-69236612 Msa0698830:intron 25.0%
! AATGAAAACATAAGTCGAAA+AGG + chr4_4:69236674-69236693 None:intergenic 25.0%
!! AGTATAATTAGTTTAGGGTT+TGG - chr4_4:69236972-69236991 Msa0698830:intron 25.0%
! ATTATCCAAAATAAACTCCT+AGG + chr4_4:69237262-69237281 None:intergenic 25.0%
!! AAGGAAGTATAATTAGTTCA+TGG - chr4_4:69237306-69237325 Msa0698830:intron 25.0%
! AGTATAATTAGTTCATGGTT+TGG - chr4_4:69237311-69237330 Msa0698830:intron 25.0%
! TTAATCTAGACAATTGTTTG+TGG - chr4_4:69237404-69237423 Msa0698830:CDS 25.0%
! TGAAAATAAATTAAGCGTGA+CGG - chr4_4:69237655-69237674 Msa0698830:intron 25.0%
! ACCTATAGTAGAAAAAATAG+TGG - chr4_4:69237762-69237781 Msa0698830:intron 25.0%
!!! TCCACTATTTTTTCTACTAT+AGG + chr4_4:69237766-69237785 None:intergenic 25.0%
!! TAGAAAAAATAGTGGAAACT+AGG - chr4_4:69237770-69237789 Msa0698830:intron 25.0%
! AAATCTTGAGATTAATGAGT+TGG - chr4_4:69237918-69237937 Msa0698830:intron 25.0%
!! TGAGTTGGATAGAAAAATAT+TGG - chr4_4:69237933-69237952 Msa0698830:intron 25.0%
!!! CTAATATCACTATGTTTTGA+TGG + chr4_4:69238109-69238128 None:intergenic 25.0%
!! TAATGACATTGGATTTTGTT+AGG - chr4_4:69238475-69238494 Msa0698830:intron 25.0%
!!! TTGATCTAGATTGTTGTTTT+CGG - chr4_4:69238681-69238700 Msa0698830:intron 25.0%
! AAAACTCAGTAAACATTTCA+GGG + chr4_4:69238870-69238889 None:intergenic 25.0%
! TAAATAATAAACCCAAAAGC+CGG - chr4_4:69238920-69238939 Msa0698830:intron 25.0%
!!! TTGTCAATTTTTTAACCTCA+TGG - chr4_4:69238979-69238998 Msa0698830:intron 25.0%
!!! TGTCAATTTTTTAACCTCAT+GGG - chr4_4:69238980-69238999 Msa0698830:intron 25.0%
! AACCTAATATAACTCAAGAA+AGG + chr4_4:69239056-69239075 None:intergenic 25.0%
! TGTATATAATATATGGGCTT+CGG - chr4_4:69239239-69239258 Msa0698830:intron 25.0%
! AACAACTAACTTCTAACATT+TGG + chr4_4:69239311-69239330 None:intergenic 25.0%
! AAATGTTAGAAGTTAGTTGT+TGG - chr4_4:69239310-69239329 Msa0698830:intron 25.0%
! TCAAGTTAAAATGTCTAAAG+TGG - chr4_4:69239422-69239441 Msa0698830:CDS 25.0%
!! CAAGTTAAAATGTCTAAAGT+GGG - chr4_4:69239423-69239442 Msa0698830:CDS 25.0%
! AAGACAACATACTTCAAATA+TGG - chr4_4:69239698-69239717 Msa0698830:CDS 25.0%
! ACTGAGTTCAATTACATTAA+GGG + chr4_4:69239783-69239802 None:intergenic 25.0%
! AACTGAGTTCAATTACATTA+AGG + chr4_4:69239784-69239803 None:intergenic 25.0%
!! TGAAATATAGGTTGAATGTT+TGG - chr4_4:69239809-69239828 Msa0698830:CDS 25.0%
!! GAAATATAGGTTGAATGTTT+GGG - chr4_4:69239810-69239829 Msa0698830:CDS 25.0%
! ATTGTAGCTGTATTTCAATA+TGG - chr4_4:69239882-69239901 Msa0698830:CDS 25.0%
!!! ATGTGATGTTGTTTTTTCGA+GGG + chr4_4:69235940-69235959 None:intergenic 30.0%
!!! AATGTGATGTTGTTTTTTCG+AGG + chr4_4:69235941-69235960 None:intergenic 30.0%
TCAACGAAGAATACAAAATC+TGG - chr4_4:69236036-69236055 Msa0698830:three_prime_UTR 30.0%
! TTTTGTGATTGCTACTAAGA+CGG - chr4_4:69236400-69236419 Msa0698830:intron 30.0%
TTAAGAGGACATAATACTGA+AGG - chr4_4:69236506-69236525 Msa0698830:intron 30.0%
TCTTGGAGTAAGTTTAAACA+AGG - chr4_4:69236539-69236558 Msa0698830:intron 30.0%
! TGATGCTCATCAGATTTTTA+AGG - chr4_4:69236637-69236656 Msa0698830:intron 30.0%
! TATGTTTTCATTGTTTTCGC+TGG - chr4_4:69236682-69236701 Msa0698830:intron 30.0%
!!! TGTGTGGTTTTTTGTTTGTT+AGG - chr4_4:69236719-69236738 Msa0698830:intron 30.0%
! TTTGTTTGTTAGGTTCATGA+AGG - chr4_4:69236729-69236748 Msa0698830:intron 30.0%
!! AGTATTTGTTTGGTTCTGTT+GGG - chr4_4:69236787-69236806 Msa0698830:intron 30.0%
ATGATCAGTATTTGCTTGTA+TGG - chr4_4:69236811-69236830 Msa0698830:intron 30.0%
TGATCAGTATTTGCTTGTAT+GGG - chr4_4:69236812-69236831 Msa0698830:intron 30.0%
ATTTGCATCACATAAAGCAT+CGG + chr4_4:69237230-69237249 None:intergenic 30.0%
!! CTTTTACATTTGGGTTTTCA+AGG - chr4_4:69237287-69237306 Msa0698830:intron 30.0%
! TGAAAGTAGCAACTATTTTG+TGG - chr4_4:69237429-69237448 Msa0698830:CDS 30.0%
! ATTTTGTGGAAATTAGTGTG+AGG - chr4_4:69237443-69237462 Msa0698830:CDS 30.0%
! TTTTGTGGAAATTAGTGTGA+GGG - chr4_4:69237444-69237463 Msa0698830:CDS 30.0%
ATGTTAAGTGAACAGATACA+GGG - chr4_4:69237507-69237526 Msa0698830:intron 30.0%
!! AGTTGATGGGAAAATTTCAT+TGG - chr4_4:69237613-69237632 Msa0698830:intron 30.0%
TTGTGTTGAAAGACTTCATT+CGG - chr4_4:69238145-69238164 Msa0698830:intron 30.0%
TTGAAAATCTGAGTAAAGAC+AGG + chr4_4:69238322-69238341 None:intergenic 30.0%
! ATTTTGTTAGGTTAACTGCT+TGG - chr4_4:69238487-69238506 Msa0698830:intron 30.0%
! ATGTTACTTATGGCAATCAA+AGG + chr4_4:69238609-69238628 None:intergenic 30.0%
!!! TGATCTAGATTGTTGTTTTC+GGG - chr4_4:69238682-69238701 Msa0698830:intron 30.0%
CAAAACTCAGTAAACATTTC+AGG + chr4_4:69238871-69238890 None:intergenic 30.0%
! CTGAAATGTTTACTGAGTTT+TGG - chr4_4:69238869-69238888 Msa0698830:intron 30.0%
!! TTTACTGAGTTTTGGTATGT+TGG - chr4_4:69238877-69238896 Msa0698830:intron 30.0%
TAAGAGAAACTTTAATCCAG+TGG + chr4_4:69238951-69238970 None:intergenic 30.0%
ACTTAATTCGCTAAAAAGAG+TGG + chr4_4:69239018-69239037 None:intergenic 30.0%
!! ACTCTTTTTAGCGAATTAAG+TGG - chr4_4:69239017-69239036 Msa0698830:intron 30.0%
TGCCTTTCTTGAGTTATATT+AGG - chr4_4:69239051-69239070 Msa0698830:intron 30.0%
TAATGAGACTAATGGAGTAA+TGG - chr4_4:69239079-69239098 Msa0698830:intron 30.0%
TTAATATTTACTCCTTCGTC+CGG - chr4_4:69239334-69239353 Msa0698830:CDS 30.0%
! TGTTGTTCACTCTTTTATGT+AGG - chr4_4:69239539-69239558 Msa0698830:CDS 30.0%
TGAATAAAAAGCAATTCTGG+TGG + chr4_4:69239604-69239623 None:intergenic 30.0%
CCATGAATAAAAAGCAATTC+TGG + chr4_4:69239607-69239626 None:intergenic 30.0%
!!! CCAGAATTGCTTTTTATTCA+TGG - chr4_4:69239604-69239623 Msa0698830:CDS 30.0%
!!! GAATTGCTTTTTATTCATGG+TGG - chr4_4:69239607-69239626 Msa0698830:CDS 30.0%
CTGAGTTCAATTACATTAAG+GGG + chr4_4:69239782-69239801 None:intergenic 30.0%
CTCAGTTTAGTGTGAAATAT+AGG - chr4_4:69239797-69239816 Msa0698830:CDS 30.0%
AAAGAAGACGAAGAAATGAG+AGG - chr4_4:69235993-69236012 Msa0698830:three_prime_UTR 35.0%
! ACAGATTAATCATGATGGTG+AGG - chr4_4:69236346-69236365 Msa0698830:CDS 35.0%
GCAATCACAAAACTATTCTG+AGG + chr4_4:69236392-69236411 None:intergenic 35.0%
TTACAACTTCCATCAATTGG+AGG + chr4_4:69236473-69236492 None:intergenic 35.0%
GGACATAATACTGAAGGTTA+TGG - chr4_4:69236512-69236531 Msa0698830:intron 35.0%
AAACAAGGACATTTGCTTAG+TGG - chr4_4:69236554-69236573 Msa0698830:intron 35.0%
! ATGATGCTCAGATTTGTTTG+TGG - chr4_4:69236582-69236601 Msa0698830:intron 35.0%
! TGATGCTCAGATTTGTTTGT+GGG - chr4_4:69236583-69236602 Msa0698830:intron 35.0%
GCATCAAGAGACTTATTCTT+AGG + chr4_4:69236623-69236642 None:intergenic 35.0%
TTGAGGCATGAGTATTTGTT+TGG - chr4_4:69236777-69236796 Msa0698830:intron 35.0%
!! GAGTATTTGTTTGGTTCTGT+TGG - chr4_4:69236786-69236805 Msa0698830:intron 35.0%
!! GTATTTGTTTGGTTCTGTTG+GGG - chr4_4:69236788-69236807 Msa0698830:intron 35.0%
! GAAAGTAGCAACCTATTTTG+TGG - chr4_4:69237076-69237095 Msa0698830:intron 35.0%
CGCACTAATTTCCACAAAAT+AGG + chr4_4:69237090-69237109 None:intergenic 35.0%
! ATTTTGTGGAAATTAGTGCG+AGG - chr4_4:69237090-69237109 Msa0698830:intron 35.0%
! TTTTGTGGAAATTAGTGCGA+GGG - chr4_4:69237091-69237110 Msa0698830:intron 35.0%
TGAATCTGTCAAAATGAGCA+TGG - chr4_4:69237119-69237138 Msa0698830:intron 35.0%
ATAACATGCACCATTCAAAC+TGG - chr4_4:69237181-69237200 Msa0698830:CDS 35.0%
TTTCAACCATCCAGTTTGAA+TGG + chr4_4:69237194-69237213 None:intergenic 35.0%
TTCAAACTGGATGGTTGAAA+TGG - chr4_4:69237194-69237213 Msa0698830:CDS 35.0%
GCTTTATGTGATGCAAATGT+AGG - chr4_4:69237232-69237251 Msa0698830:CDS 35.0%
TATGTGATGCAAATGTAGGA+AGG - chr4_4:69237236-69237255 Msa0698830:CDS 35.0%
!!! TAGTTCATGGTTTGGTTTTG+TGG - chr4_4:69237319-69237338 Msa0698830:intron 35.0%
!!! AGTTCATGGTTTGGTTTTGT+GGG - chr4_4:69237320-69237339 Msa0698830:intron 35.0%
TGAATCTGTCAAAATGAGCA+TGG - chr4_4:69237119-69237138 Msa0698830:intron 35.0%
CTGTATCTGTTCACTTAACA+TGG + chr4_4:69237508-69237527 None:intergenic 35.0%
CATGTTAAGTGAACAGATAC+AGG - chr4_4:69237506-69237525 Msa0698830:intron 35.0%
CGCATCACATAAAATACTTG+AGG + chr4_4:69237580-69237599 None:intergenic 35.0%
!! AAAGTACTGCTCAAGTTGAT+GGG - chr4_4:69237600-69237619 Msa0698830:intron 35.0%
TGTAGTACACTAGACAAGAT+AGG - chr4_4:69237701-69237720 Msa0698830:intron 35.0%
! AAATAGTGGAAACTAGGCTT+AGG - chr4_4:69237776-69237795 Msa0698830:intron 35.0%
GAATTACTAGAGGTAGAAGA+AGG - chr4_4:69237864-69237883 Msa0698830:intron 35.0%
!!! TCACTATGTTTTGATGGGTT+GGG + chr4_4:69238103-69238122 None:intergenic 35.0%
!!! ATCACTATGTTTTGATGGGT+TGG + chr4_4:69238104-69238123 None:intergenic 35.0%
CATAGTGATATTAGACCGAA+AGG - chr4_4:69238115-69238134 Msa0698830:intron 35.0%
CAACACAATGTTGAACCTTT+CGG + chr4_4:69238133-69238152 None:intergenic 35.0%
TGTGTTGAAAGACTTCATTC+GGG - chr4_4:69238146-69238165 Msa0698830:intron 35.0%
CATCGTCAATATTTGAGAAC+TGG - chr4_4:69238217-69238236 Msa0698830:intron 35.0%
GTGGCTATATTTCACATATC+TGG - chr4_4:69238266-69238285 Msa0698830:intron 35.0%
CTTTCAATCCCTTCAATGAA+TGG - chr4_4:69238510-69238529 Msa0698830:intron 35.0%
GCAACTATCCATTCATTGAA+GGG + chr4_4:69238521-69238540 None:intergenic 35.0%
AGCAACTATCCATTCATTGA+AGG + chr4_4:69238522-69238541 None:intergenic 35.0%
AATGAATGGATAGTTGCTAC+TGG - chr4_4:69238524-69238543 Msa0698830:intron 35.0%
GGACAAAACAGTGAAATTGT+GGG - chr4_4:69238553-69238572 Msa0698830:intron 35.0%
! TCTACGGAGAATGTTACTTA+TGG + chr4_4:69238619-69238638 None:intergenic 35.0%
!!! ATTGTTGTTTTCGGGTTAAC+AGG - chr4_4:69238690-69238709 Msa0698830:intron 35.0%
!!! TTGTTGTTTTCGGGTTAACA+GGG - chr4_4:69238691-69238710 Msa0698830:intron 35.0%
CCAAGACAGTTTCATTCTTT+GGG + chr4_4:69238742-69238761 None:intergenic 35.0%
!! AATGAAAGCATCACCATATC+TGG - chr4_4:69238817-69238836 Msa0698830:intron 35.0%
TTCACTAGAAAGTCCAGATA+TGG + chr4_4:69238833-69238852 None:intergenic 35.0%
AGAAACTTTAATCCAGTGGA+AGG + chr4_4:69238947-69238966 None:intergenic 35.0%
AGGTTCTGTAATGAGACTAA+TGG - chr4_4:69239071-69239090 Msa0698830:intron 35.0%
ACATCAAAGTCCAAAGATCA+GGG + chr4_4:69239160-69239179 None:intergenic 35.0%
TACATCAAAGTCCAAAGATC+AGG + chr4_4:69239161-69239180 None:intergenic 35.0%
!!! CACCGACTTTTGTTATAGAT+GGG - chr4_4:69239182-69239201 Msa0698830:CDS 35.0%
!! ACCGACTTTTGTTATAGATG+GGG - chr4_4:69239183-69239202 Msa0698830:CDS 35.0%
ACCCCATCTATAACAAAAGT+CGG + chr4_4:69239187-69239206 None:intergenic 35.0%
! AATCAACAGAAGCATGCAAT+TGG + chr4_4:69239211-69239230 None:intergenic 35.0%
TAATATTTACTCCTTCGTCC+GGG - chr4_4:69239335-69239354 Msa0698830:CDS 35.0%
AACTTGAAACATTTGAGGGT+TGG + chr4_4:69239409-69239428 None:intergenic 35.0%
CATACTTCAAATATGGCAGA+TGG - chr4_4:69239705-69239724 Msa0698830:CDS 35.0%
ACAGCTACAATTGTGTAGAA+AGG + chr4_4:69239873-69239892 None:intergenic 35.0%
TTGTTATGCGTTGAGTCATT+AGG - chr4_4:69239963-69239982 Msa0698830:CDS 35.0%
TCTTGATGTGAAAAGTTCTC+AGG - chr4_4:69240008-69240027 Msa0698830:five_prime_UTR 35.0%
ACATCACATTTGAGAGAGCT+AGG - chr4_4:69235951-69235970 Msa0698830:three_prime_UTR 40.0%
CATCACATTTGAGAGAGCTA+GGG - chr4_4:69235952-69235971 Msa0698830:three_prime_UTR 40.0%
!!! CTAGGGTTTTGAAAGTGGAT+GGG - chr4_4:69235969-69235988 Msa0698830:three_prime_UTR 40.0%
!!! TAGGGTTTTGAAAGTGGATG+GGG - chr4_4:69235970-69235989 Msa0698830:three_prime_UTR 40.0%
! GAGGTAATTGGGTTCGTTTT+CGG + chr4_4:69236207-69236226 None:intergenic 40.0%
GGGTTACAACTTCCATCAAT+TGG + chr4_4:69236476-69236495 None:intergenic 40.0%
! GAAGTTGTAACCCTGATTTG+AGG - chr4_4:69236483-69236502 Msa0698830:intron 40.0%
! AACCCTGATTTGAGGTTAAG+AGG - chr4_4:69236491-69236510 Msa0698830:intron 40.0%
GTCCTCTTAACCTCAAATCA+GGG + chr4_4:69236496-69236515 None:intergenic 40.0%
TGTCCTCTTAACCTCAAATC+AGG + chr4_4:69236497-69236516 None:intergenic 40.0%
! CTGAAGGTTATGGTTTGTCT+TGG - chr4_4:69236522-69236541 Msa0698830:intron 40.0%
! CATTGTTTTCGCTGGATTGT+TGG - chr4_4:69236690-69236709 Msa0698830:intron 40.0%
!!! GGATTGTTGGTGATTTTGTG+TGG - chr4_4:69236703-69236722 Msa0698830:intron 40.0%
!! TTAGGTTCATGAAGGTGTTG+TGG - chr4_4:69236737-69236756 Msa0698830:intron 40.0%
TGAACAGGCTTAGTAACAGA+CGG + chr4_4:69236849-69236868 None:intergenic 40.0%
! GAAGGCCTAGGAGTTTATTT+TGG - chr4_4:69237254-69237273 Msa0698830:intron 40.0%
TGGAAATTAGTGTGAGGGAT+TGG - chr4_4:69237449-69237468 Msa0698830:CDS 40.0%
TGTCAAAATGAGCATGGCAT+GGG - chr4_4:69237478-69237497 Msa0698830:intron 40.0%
TGGGTGGTTGAAATGGAATA+GGG - chr4_4:69237554-69237573 Msa0698830:intron 40.0%
!! GAAAGTACTGCTCAAGTTGA+TGG - chr4_4:69237599-69237618 Msa0698830:intron 40.0%
! AAATTAAGCGTGACGGAGAT+AGG - chr4_4:69237662-69237681 Msa0698830:intron 40.0%
! AATTAAGCGTGACGGAGATA+GGG - chr4_4:69237663-69237682 Msa0698830:intron 40.0%
ACAACATTTGAGAGAGAGCT+GGG - chr4_4:69237734-69237753 Msa0698830:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG - chr4_4:69237785-69237804 Msa0698830:intron 40.0%
CTGATCTATTGTCCTTACGA+CGG + chr4_4:69237836-69237855 None:intergenic 40.0%
CGTAAGGACAATAGATCAGA+TGG - chr4_4:69237837-69237856 Msa0698830:intron 40.0%
AAGGACAATAGATCAGATGG+AGG - chr4_4:69237840-69237859 Msa0698830:intron 40.0%
AGATGGAGGAGAATTACTAG+AGG - chr4_4:69237854-69237873 Msa0698830:intron 40.0%
GTGTTGAAAGACTTCATTCG+GGG - chr4_4:69238147-69238166 Msa0698830:intron 40.0%
GACAGGAAATTCTATCAGCA+AGG + chr4_4:69238305-69238324 None:intergenic 40.0%
!! GATAGTTGCTACTGGTTCTA+CGG - chr4_4:69238532-69238551 Msa0698830:intron 40.0%
CGGACAAAACAGTGAAATTG+TGG - chr4_4:69238552-69238571 Msa0698830:intron 40.0%
CCCAAAGAATGAAACTGTCT+TGG - chr4_4:69238739-69238758 Msa0698830:intron 40.0%
GCCAAGACAGTTTCATTCTT+TGG + chr4_4:69238743-69238762 None:intergenic 40.0%
GGAACTTTAATTCACCCATG+AGG + chr4_4:69238997-69239016 None:intergenic 40.0%
CATCAAAGTCCAAAGATCAG+GGG + chr4_4:69239159-69239178 None:intergenic 40.0%
!!! GCACCGACTTTTGTTATAGA+TGG - chr4_4:69239181-69239200 Msa0698830:CDS 40.0%
GCAAAATATCCGACTTCTCA+TGG - chr4_4:69239638-69239657 Msa0698830:CDS 40.0%
ATGGAACCCATGTGAAGATT+GGG - chr4_4:69239657-69239676 Msa0698830:CDS 40.0%
CAACAACCCAATCTTCACAT+GGG + chr4_4:69239666-69239685 None:intergenic 40.0%
AGGTTGAATGTTTGGGTCTA+AGG - chr4_4:69239817-69239836 Msa0698830:CDS 40.0%
AGTAACAGCACGAATACAGA+TGG + chr4_4:69239850-69239869 None:intergenic 40.0%
! AGGAAGTAGTGGGATAGAGA+AGG - chr4_4:69235878-69235897 Msa0698830:three_prime_UTR 45.0%
! GGAAGTAGTGGGATAGAGAA+GGG - chr4_4:69235879-69235898 Msa0698830:three_prime_UTR 45.0%
! GAAGTAGTGGGATAGAGAAG+GGG - chr4_4:69235880-69235899 Msa0698830:three_prime_UTR 45.0%
! AAGTAGTGGGATAGAGAAGG+GGG - chr4_4:69235881-69235900 Msa0698830:three_prime_UTR 45.0%
!!! GAGAGCTAGGGTTTTGAAAG+TGG - chr4_4:69235964-69235983 Msa0698830:three_prime_UTR 45.0%
!!! GCTAGGGTTTTGAAAGTGGA+TGG - chr4_4:69235968-69235987 Msa0698830:three_prime_UTR 45.0%
ATGACGAGATCGTAGAGGAA+GGG + chr4_4:69236074-69236093 None:intergenic 45.0%
! TTGGACGGAGTAGTCTTTTC+CGG + chr4_4:69236159-69236178 None:intergenic 45.0%
TCCGTCCAAAAACTCATCCT+CGG - chr4_4:69236170-69236189 Msa0698830:three_prime_UTR 45.0%
TGTGCGAGCATGAGGTAATT+GGG + chr4_4:69236218-69236237 None:intergenic 45.0%
!! GTAATGACGAGCGTCGTTTT+CGG + chr4_4:69236264-69236283 None:intergenic 45.0%
ATGGTGAGGTTAATAGAGCG+AGG - chr4_4:69236360-69236379 Msa0698830:CDS 45.0%
TACTAAGACGGTTAGTGCTG+AGG - chr4_4:69236412-69236431 Msa0698830:intron 45.0%
CCATCAATTGGAGGCTTAGA+AGG + chr4_4:69236464-69236483 None:intergenic 45.0%
CCTTCTAAGCCTCCAATTGA+TGG - chr4_4:69236461-69236480 Msa0698830:intron 45.0%
!! TGAAGGTGTTGTGGAAGATG+TGG - chr4_4:69236746-69236765 Msa0698830:intron 45.0%
! AAGATGTGGCTTGGCATTTG+AGG - chr4_4:69236760-69236779 Msa0698830:intron 45.0%
TGAGCAATGCAAGACTGAAC+AGG + chr4_4:69236864-69236883 None:intergenic 45.0%
TTGCATTGCTCATTCAAGCG+AGG - chr4_4:69236872-69236891 Msa0698830:intron 45.0%
TGGAAATTAGTGCGAGGGAT+TGG - chr4_4:69237096-69237115 Msa0698830:intron 45.0%
TGTCAAAATGAGCATGGCCT+GGG - chr4_4:69237125-69237144 Msa0698830:intron 45.0%
ACGTGCTAGGTGGAAAGATA+CGG - chr4_4:69237152-69237171 Msa0698830:intron 45.0%
CATGCACCATTCAAACTGGA+TGG - chr4_4:69237185-69237204 Msa0698830:CDS 45.0%
TGGATGGTTGAAATGGAGCA+GGG - chr4_4:69237201-69237220 Msa0698830:CDS 45.0%
!! TGCATCACATAAAGCATCGG+AGG + chr4_4:69237227-69237246 None:intergenic 45.0%
ATGCAAATGTAGGAAGGCCT+AGG - chr4_4:69237242-69237261 Msa0698830:CDS 45.0%
CTGTCAAAATGAGCATGGCA+TGG - chr4_4:69237477-69237496 Msa0698830:intron 45.0%
GTCAAAATGAGCATGGCATG+GGG - chr4_4:69237479-69237498 Msa0698830:intron 45.0%
TAAACACGCACCATTCAAGC+TGG - chr4_4:69237534-69237553 Msa0698830:intron 45.0%
AAACACGCACCATTCAAGCT+GGG - chr4_4:69237535-69237554 Msa0698830:intron 45.0%
TTTCAACCACCCAGCTTGAA+TGG + chr4_4:69237547-69237566 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - chr4_4:69237547-69237566 Msa0698830:intron 45.0%
CTGGGTGGTTGAAATGGAAT+AGG - chr4_4:69237553-69237572 Msa0698830:intron 45.0%
GACAACATTTGAGAGAGAGC+TGG - chr4_4:69237733-69237752 Msa0698830:intron 45.0%
CAACATTTGAGAGAGAGCTG+GGG - chr4_4:69237735-69237754 Msa0698830:intron 45.0%
TAGTGGAAACTAGGCTTAGG+TGG - chr4_4:69237779-69237798 Msa0698830:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - chr4_4:69237784-69237803 Msa0698830:intron 45.0%
TTGAAAGACTTCATTCGGGG+TGG - chr4_4:69238150-69238169 Msa0698830:intron 45.0%
TGAAAGACTTCATTCGGGGT+GGG - chr4_4:69238151-69238170 Msa0698830:intron 45.0%
!!! TTGTTTTCGGGTTAACAGGG+AGG - chr4_4:69238694-69238713 Msa0698830:intron 45.0%
! GTCTTGGCTTCTTGTTGTCT+TGG - chr4_4:69238755-69238774 Msa0698830:intron 45.0%
! TGGCTTCTTGTTGTCTTGGT+AGG - chr4_4:69238759-69238778 Msa0698830:intron 45.0%
TTGTCTTGGTAGGAGACTGA+TGG - chr4_4:69238769-69238788 Msa0698830:intron 45.0%
CTTTAATCCAGTGGAAGGAC+CGG + chr4_4:69238942-69238961 None:intergenic 45.0%
! CTACGGGATAACGAGGTATT+GGG + chr4_4:69239367-69239386 None:intergenic 45.0%
!! AGCTCAACTGGTTTGAGCTA+CGG + chr4_4:69239384-69239403 None:intergenic 45.0%
ACATGGGTTCCATGAGAAGT+CGG + chr4_4:69239650-69239669 None:intergenic 45.0%
CATGGAACCCATGTGAAGAT+TGG - chr4_4:69239656-69239675 Msa0698830:CDS 45.0%
GCAACAACCCAATCTTCACA+TGG + chr4_4:69239667-69239686 None:intergenic 45.0%
! AGATTGGGTTGTTGCTAGTG+TGG - chr4_4:69239672-69239691 Msa0698830:CDS 45.0%
CTGGCATATCATCTTCGTCA+TGG + chr4_4:69239744-69239763 None:intergenic 45.0%
!!! TCTCAGGTCGCTTTTAACAG+AGG - chr4_4:69240024-69240043 Msa0698830:five_prime_UTR 45.0%
GATGACGAGATCGTAGAGGA+AGG + chr4_4:69236075-69236094 None:intergenic 50.0%
! GAGTGATGACGAGATCGTAG+AGG + chr4_4:69236079-69236098 None:intergenic 50.0%
TCATCACTCACGCTCTCGAA+TGG - chr4_4:69236090-69236109 Msa0698830:three_prime_UTR 50.0%
!! CCCGAGGATGAGTTTTTGGA+CGG + chr4_4:69236174-69236193 None:intergenic 50.0%
CCGTCCAAAAACTCATCCTC+GGG - chr4_4:69236171-69236190 Msa0698830:three_prime_UTR 50.0%
!! GGGTTCGTTTTCGGAAGTGT+GGG + chr4_4:69236198-69236217 None:intergenic 50.0%
! TGGGTTCGTTTTCGGAAGTG+TGG + chr4_4:69236199-69236218 None:intergenic 50.0%
CTGTGCGAGCATGAGGTAAT+TGG + chr4_4:69236219-69236238 None:intergenic 50.0%
CAATTACCTCATGCTCGCAC+AGG - chr4_4:69236217-69236236 Msa0698830:CDS 50.0%
GATGACGATCGTCCTGAAGT+TGG - chr4_4:69236284-69236303 Msa0698830:CDS 50.0%
ACGATCGTCCTGAAGTTGGA+GGG - chr4_4:69236288-69236307 Msa0698830:CDS 50.0%
CAACCAAACCCTCCAACTTC+AGG + chr4_4:69236299-69236318 None:intergenic 50.0%
! GAGGGTTTGGTTGTGCGAAT+GGG - chr4_4:69236306-69236325 Msa0698830:CDS 50.0%
GTTTGGTTGTGCGAATGGGA+AGG - chr4_4:69236310-69236329 Msa0698830:CDS 50.0%
GTGTTGTGGAAGATGTGGCT+TGG - chr4_4:69236751-69236770 Msa0698830:intron 50.0%
CTGTCAAAATGAGCATGGCC+TGG - chr4_4:69237124-69237143 Msa0698830:intron 50.0%
GTCAAAATGAGCATGGCCTG+GGG - chr4_4:69237126-69237145 Msa0698830:intron 50.0%
CTGGATGGTTGAAATGGAGC+AGG - chr4_4:69237200-69237219 Msa0698830:CDS 50.0%
CGGAGATAGGGATGTTGTGT+TGG - chr4_4:69237675-69237694 Msa0698830:intron 50.0%
GACATGTGCATTCCGTCGTA+AGG - chr4_4:69237821-69237840 Msa0698830:intron 50.0%
ACAACTGCAGAGTGGAGTCA+TGG + chr4_4:69238243-69238262 None:intergenic 50.0%
TCCACTCTGCAGTTGTACAG+TGG - chr4_4:69238247-69238266 Msa0698830:intron 50.0%
TTGTGGGATCTGCGCAAGAT+TGG - chr4_4:69238569-69238588 Msa0698830:intron 50.0%
!!! TTTTCGGGTTAACAGGGAGG+AGG - chr4_4:69238697-69238716 Msa0698830:intron 50.0%
! TAACAGGGAGGAGGTTTTCC+AGG - chr4_4:69238706-69238725 Msa0698830:intron 50.0%
! TTGGTAGGAGACTGATGGTG+TGG - chr4_4:69238774-69238793 Msa0698830:intron 50.0%
! TGGTAGGAGACTGATGGTGT+GGG - chr4_4:69238775-69238794 Msa0698830:intron 50.0%
! TGATGGTGTGGGATCTTAGC+AGG - chr4_4:69238786-69238805 Msa0698830:intron 50.0%
GTCCAAAGATCAGGGGACAT+GGG + chr4_4:69239152-69239171 None:intergenic 50.0%
AGTCCAAAGATCAGGGGACA+TGG + chr4_4:69239153-69239172 None:intergenic 50.0%
!! CGAGGTATTGGGTTCAAACC+CGG + chr4_4:69239356-69239375 None:intergenic 50.0%
GCTACGGGATAACGAGGTAT+TGG + chr4_4:69239368-69239387 None:intergenic 50.0%
GTTTGAGCTACGGGATAACG+AGG + chr4_4:69239374-69239393 None:intergenic 50.0%
!! GCTCAACTGGTTTGAGCTAC+GGG + chr4_4:69239383-69239402 None:intergenic 50.0%
TGAGGGTTGGATAGCTCAAC+TGG + chr4_4:69239396-69239415 None:intergenic 50.0%
TCACCAGAGGATGCTGAAGA+TGG - chr4_4:69239577-69239596 Msa0698830:CDS 50.0%
TATGCCAGAACAGTCAGCAC+AGG - chr4_4:69239756-69239775 Msa0698830:CDS 50.0%
!!! CAGGTCGCTTTTAACAGAGG+TGG - chr4_4:69240027-69240046 Msa0698830:five_prime_UTR 50.0%
GGCAAAATGCTTTCGTGCAC+AGG + chr4_4:69240083-69240102 None:intergenic 50.0%
AGCCATTCGACGGTGAGAGA+TGG + chr4_4:69236116-69236135 None:intergenic 55.0%
GCGATCTGGAAGCCATTCGA+CGG + chr4_4:69236126-69236145 None:intergenic 55.0%
! ACGGAGTAGTCTTTTCCGGC+GGG + chr4_4:69236155-69236174 None:intergenic 55.0%
! GACGGAGTAGTCTTTTCCGG+CGG + chr4_4:69236156-69236175 None:intergenic 55.0%
! GGGTCCCGAGGATGAGTTTT+TGG + chr4_4:69236178-69236197 None:intergenic 55.0%
GTTGAACCTGTGCGAGCATG+AGG + chr4_4:69236226-69236245 None:intergenic 55.0%
! CGTTTTCGGAGTCGTCGAGA+GGG + chr4_4:69236250-69236269 None:intergenic 55.0%
! TCGTTTTCGGAGTCGTCGAG+AGG + chr4_4:69236251-69236270 None:intergenic 55.0%
GACGATCGTCCTGAAGTTGG+AGG - chr4_4:69236287-69236306 Msa0698830:CDS 55.0%
CGTCCTGAAGTTGGAGGGTT+TGG - chr4_4:69236293-69236312 Msa0698830:CDS 55.0%
! GGAGGGTTTGGTTGTGCGAA+TGG - chr4_4:69236305-69236324 Msa0698830:CDS 55.0%
GCCACTGTACAACTGCAGAG+TGG + chr4_4:69238251-69238270 None:intergenic 55.0%
! AGGGAGGAGGTTTTCCAGGT+TGG - chr4_4:69238710-69238729 Msa0698830:intron 55.0%
!! AGGAGGTTTTCCAGGTTGGC+TGG - chr4_4:69238714-69238733 Msa0698830:intron 55.0%
! TCTTTGGGTTCCAGCCAACC+TGG + chr4_4:69238727-69238746 None:intergenic 55.0%
!! CAGTGGAAGGACCGGCTTTT+GGG + chr4_4:69238934-69238953 None:intergenic 55.0%
CACCCATGTCCCCTGATCTT+TGG - chr4_4:69239147-69239166 Msa0698830:CDS 55.0%
TTGGGTTCAAACCCGGACGA+AGG + chr4_4:69239349-69239368 None:intergenic 55.0%
TGACGAAGAGCAGTCACCAG+AGG - chr4_4:69239564-69239583 Msa0698830:CDS 55.0%
GGACCATCTTCAGCATCCTC+TGG + chr4_4:69239583-69239602 None:intergenic 55.0%
GGCCATCTCTCACCGTCGAA+TGG - chr4_4:69236111-69236130 Msa0698830:three_prime_UTR 60.0%
! TTTCGGAAGTGTGGGTCCCG+AGG + chr4_4:69236190-69236209 None:intergenic 60.0%
TGGCCTGGGGATAACGTGCT+AGG - chr4_4:69237139-69237158 Msa0698830:intron 60.0%
CCACCTAGCACGTTATCCCC+AGG + chr4_4:69237145-69237164 None:intergenic 60.0%
CCTGGGGATAACGTGCTAGG+TGG - chr4_4:69237142-69237161 Msa0698830:intron 60.0%
CACGCACCATTCAAGCTGGG+TGG - chr4_4:69237538-69237557 Msa0698830:intron 60.0%
!! CCAGTGGAAGGACCGGCTTT+TGG + chr4_4:69238935-69238954 None:intergenic 60.0%
CCAAAAGCCGGTCCTTCCAC+TGG - chr4_4:69238932-69238951 Msa0698830:intron 60.0%
CCAGATCGCACTGAACCCGC+CGG - chr4_4:69236137-69236156 Msa0698830:three_prime_UTR 65.0%
!! GGGGCCTGTGCTGACTGTTC+TGG + chr4_4:69239763-69239782 None:intergenic 65.0%
! CCGGCGGGTTCAGTGCGATC+TGG + chr4_4:69236140-69236159 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 69235875 69240102 69235875 ID=Msa0698830;Name=Msa0698830
chr4_4 mRNA 69235875 69240102 69235875 ID=Msa0698830-mRNA-1;Parent=Msa0698830;Name=Msa0698830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=112|1|1|1|1|1|5|316|423
chr4_4 exon 69235875 69236416 69235875 ID=Msa0698830-mRNA-1:exon:20753;Parent=Msa0698830-mRNA-1
chr4_4 exon 69237170 69237265 69237170 ID=Msa0698830-mRNA-1:exon:20752;Parent=Msa0698830-mRNA-1
chr4_4 exon 69237356 69237480 69237356 ID=Msa0698830-mRNA-1:exon:20751;Parent=Msa0698830-mRNA-1
chr4_4 exon 69239084 69239236 69239084 ID=Msa0698830-mRNA-1:exon:20750;Parent=Msa0698830-mRNA-1
chr4_4 exon 69239319 69240102 69239319 ID=Msa0698830-mRNA-1:exon:20749;Parent=Msa0698830-mRNA-1
chr4_4 five_prime_UTR 69239991 69240102 69239991 ID=Msa0698830-mRNA-1:five_prime_utr;Parent=Msa0698830-mRNA-1
chr4_4 CDS 69239319 69239990 69239319 ID=Msa0698830-mRNA-1:cds;Parent=Msa0698830-mRNA-1
chr4_4 CDS 69239084 69239236 69239084 ID=Msa0698830-mRNA-1:cds;Parent=Msa0698830-mRNA-1
chr4_4 CDS 69237356 69237480 69237356 ID=Msa0698830-mRNA-1:cds;Parent=Msa0698830-mRNA-1
chr4_4 CDS 69237170 69237265 69237170 ID=Msa0698830-mRNA-1:cds;Parent=Msa0698830-mRNA-1
chr4_4 CDS 69236191 69236416 69236191 ID=Msa0698830-mRNA-1:cds;Parent=Msa0698830-mRNA-1
chr4_4 three_prime_UTR 69235875 69236190 69235875 ID=Msa0698830-mRNA-1:three_prime_utr;Parent=Msa0698830-mRNA-1
Gene Sequence

>Msa0698830

ATGGGGAAAGAAGACGAAGAAATGAGAGGCGAAATAGAAGAACGAATAATCAACGAAGAATACAAAATCTGGAAGAAAAACAGTCCCTTCCTCTACGATCTCGTCATCACTCACGCTCTCGAATGGCCATCTCTCACCGTCGAATGGCTTCCAGATCGCACTGAACCCGCCGGAAAAGACTACTCCGTCCAAAAACTCATCCTCGGGACCCACACTTCCGAAAACGAACCCAATTACCTCATGCTCGCACAGGTTCAACTCCCTCTCGACGACTCCGAAAACGACGCTCGTCATTACGATGACGATCGTCCTGAAGTTGGAGGGTTTGGTTGTGCGAATGGGAAGGTTCAGATAATTCAACAGATTAATCATGATGGTGAGGTTAATAGAGCGAGGTATATGCCTCAGAATAGTTTTGTGATTGCTACTAAGACGGTTAGTGCTGAGGTTTATGTGTTTGATTATAGTAAACATCCTTCTAAGCCTCCAATTGATGGAAGTTGTAACCCTGATTTGAGGTTAAGAGGACATAATACTGAAGGTTATGGTTTGTCTTGGAGTAAGTTTAAACAAGGACATTTGCTTAGTGGTTCTGATGATGCTCAGATTTGTTTGTGGGATATTAATGGTACTCCTAAGAATAAGTCTCTTGATGCTCATCAGATTTTTAAGGTTCATGAAGGTGTTGTGGAAGATGTGGCTTGGCATTTGAGGCATGAGTATTTGTTTGGTTCTGTTGGGGATGATCAGTATTTGCTTGTATGGGATCTGAGAACACCGTCTGTTACTAAGCCTGTTCAGTCTTGCATTGCTCATTCAAGCGAGGTTAACTGCTTGGCTTTCAATCCCTTCAATGAATGGATAGTTGCTACTGGTTCTACGGACAAAACAGTGAAATTGTGGGATCTGCGCAAGATTGGCAATGTTCTTCACACCTTTGATTGCCATAAGGAGGAGGTTTTCCAGGTTGGCTGGAACCCAAAGAATGAAACTGTCTTGGCTTCTTGTTGTCTTGGTAGGAGACTGATGGTGTGGGATCTTAGCAGGATTGACGAAGAGCAGTCACCAGAGGATGCTGAAGATGGTCCACCAGAATTGCTTTTTATTCATGGTGGTCATACAAGCAAAATATCCGACTTCTCATGGAACCCATGTGAAGATTGGGTTGTTGCTAGTGTGGCTGAAGACAACATACTTCAAATATGGCAGATGGCAGAGAACATTTACCATGACGAAGATGATATGCCAGAACAGTCAGCACAGGCCCCTTAA
Protein sequence

>Msa0698830

MGKEDEEMRGEIEERIINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRTEPAGKDYSVQKLILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRPEVGGFGCANGKVQIIQQINHDGEVNRARYMPQNSFVIATKTVSAEVYVFDYSKHPSKPPIDGSCNPDLRLRGHNTEGYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAHQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLVWDLRTPSVTKPVQSCIAHSSEVNCLAFNPFNEWIVATGSTDKTVKLWDLRKIGNVLHTFDCHKEEVFQVGWNPKNETVLASCCLGRRLMVWDLSRIDEEQSPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDMPEQSAQAP*