Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699700 | XP_039685619.1 | 94.083 | 338 | 18 | 2 | 1 | 338 | 1 | 336 | 0.0 | 651 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699700 | sp|Q8VYZ2|PPA8_ARATH | 61.538 | 325 | 124 | 1 | 8 | 332 | 5 | 328 | 4.76e-146 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699700 | A0A396GMG7 | 85.503 | 338 | 48 | 1 | 1 | 338 | 38 | 374 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050360 | Msa0699700 | 0.803338 | 3.655662e-49 | -8.615850e-47 |
| Msa0615850 | Msa0699700 | 0.810118 | 1.351247e-50 | -8.615850e-47 |
| Msa0616350 | Msa0699700 | 0.966006 | 2.392885e-125 | -8.615850e-47 |
| Msa0640880 | Msa0699700 | 0.820521 | 6.564535e-53 | -8.615850e-47 |
| Msa0698880 | Msa0699700 | 0.814431 | 1.545910e-51 | -8.615850e-47 |
| Msa0698900 | Msa0699700 | 0.815693 | 8.111466e-52 | -8.615850e-47 |
| Msa0699700 | Msa0702070 | 0.803020 | 4.254333e-49 | -8.615850e-47 |
| Msa0699700 | Msa0707780 | 0.806802 | 6.890432e-50 | -8.615850e-47 |
| Msa0699700 | Msa0990520 | 0.805180 | 1.511652e-49 | -8.615850e-47 |
| Msa0699700 | Msa1022310 | 0.806894 | 6.591527e-50 | -8.615850e-47 |
| Msa0699700 | Msa1061180 | 0.801378 | 9.264445e-49 | -8.615850e-47 |
| Msa0699700 | Msa1106560 | 0.804581 | 2.016954e-49 | -8.615850e-47 |
| Msa0699700 | Msa1325980 | 0.806444 | 8.200878e-50 | -8.615850e-47 |
| Msa0699700 | Msa1367940 | 0.802026 | 6.819276e-49 | -8.615850e-47 |
| Msa0699700 | Msa1458920 | 0.802092 | 6.609087e-49 | -8.615850e-47 |
| Msa0125230 | Msa0699700 | 0.812630 | 3.848591e-51 | -8.615850e-47 |
| Msa0225010 | Msa0699700 | 0.805210 | 1.489741e-49 | -8.615850e-47 |
| Msa0227290 | Msa0699700 | 0.803469 | 3.435322e-49 | -8.615850e-47 |
| Msa0227490 | Msa0699700 | 0.814146 | 1.787769e-51 | -8.615850e-47 |
| Msa0382500 | Msa0699700 | 0.801879 | 7.310317e-49 | -8.615850e-47 |
| Msa0432680 | Msa0699700 | 0.810840 | 9.437241e-51 | -8.615850e-47 |
| Msa0253410 | Msa0699700 | 0.800511 | 1.392636e-48 | -8.615850e-47 |
| Msa0253980 | Msa0699700 | 0.802141 | 6.459173e-49 | -8.615850e-47 |
| Msa0574170 | Msa0699700 | 0.808741 | 2.668308e-50 | -8.615850e-47 |
| Msa0576420 | Msa0699700 | 0.814846 | 1.251020e-51 | -8.615850e-47 |
| Msa0600390 | Msa0699700 | 0.819020 | 1.446084e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699700 | MtrunA17_Chr8g0375821 | 85.503 | 338 | 48 | 1 | 1 | 338 | 38 | 374 | 0.0 | 600 |
| Msa0699700 | MtrunA17_Chr8g0375781 | 82.249 | 338 | 59 | 1 | 1 | 338 | 1 | 337 | 0.0 | 580 |
| Msa0699700 | MtrunA17_Chr8g0375791 | 87.732 | 269 | 26 | 2 | 1 | 263 | 1 | 268 | 1.62e-171 | 481 |
| Msa0699700 | MtrunA17_Chr6g0479451 | 60.714 | 336 | 121 | 3 | 2 | 337 | 6 | 330 | 3.36e-145 | 413 |
| Msa0699700 | MtrunA17_Chr8g0375761 | 61.709 | 316 | 120 | 1 | 19 | 334 | 8 | 322 | 1.07e-143 | 409 |
| Msa0699700 | MtrunA17_Chr8g0393271 | 63.158 | 304 | 112 | 0 | 34 | 337 | 37 | 340 | 1.70e-143 | 409 |
| Msa0699700 | MtrunA17_Chr8g0375901 | 67.416 | 267 | 10 | 3 | 72 | 338 | 1 | 190 | 7.39e-115 | 330 |
| Msa0699700 | MtrunA17_Chr8g0375921 | 75.000 | 100 | 25 | 0 | 239 | 338 | 64 | 163 | 8.54e-50 | 164 |
| Msa0699700 | MtrunA17_Chr8g0375921 | 56.296 | 135 | 36 | 5 | 1 | 135 | 1 | 112 | 7.79e-33 | 119 |
| Msa0699700 | MtrunA17_Chr8g0375811 | 91.429 | 70 | 5 | 1 | 269 | 338 | 6 | 74 | 1.17e-37 | 129 |
| Msa0699700 | MtrunA17_Chr8g0375891 | 82.692 | 52 | 9 | 0 | 72 | 123 | 47 | 98 | 1.74e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699700 | AT2G01890.1 | 61.538 | 325 | 124 | 1 | 8 | 332 | 5 | 328 | 4.84e-147 | 418 |
| Msa0699700 | AT1G14700.1 | 60.909 | 330 | 119 | 5 | 13 | 339 | 41 | 363 | 9.75e-146 | 416 |
| Msa0699700 | AT3G17790.1 | 56.627 | 332 | 137 | 3 | 7 | 334 | 5 | 333 | 5.77e-143 | 408 |
| Msa0699700 | AT1G14700.2 | 60.303 | 330 | 119 | 6 | 13 | 339 | 41 | 361 | 1.18e-142 | 408 |
| Msa0699700 | AT2G01880.1 | 61.635 | 318 | 119 | 3 | 18 | 333 | 8 | 324 | 2.34e-142 | 406 |
| Msa0699700 | AT1G25230.1 | 60.000 | 310 | 118 | 1 | 36 | 339 | 27 | 336 | 3.05e-138 | 396 |
| Msa0699700 | AT1G25230.3 | 60.000 | 310 | 118 | 1 | 36 | 339 | 50 | 359 | 6.95e-138 | 396 |
| Msa0699700 | AT1G14700.3 | 65.799 | 269 | 89 | 2 | 72 | 339 | 1 | 267 | 2.67e-131 | 375 |
| Msa0699700 | AT2G01890.3 | 66.031 | 262 | 89 | 0 | 72 | 333 | 1 | 262 | 1.65e-129 | 371 |
| Msa0699700 | AT2G01890.2 | 56.308 | 325 | 113 | 2 | 8 | 332 | 5 | 300 | 1.75e-125 | 362 |
| Msa0699700 | AT1G25230.2 | 61.567 | 268 | 103 | 0 | 72 | 339 | 1 | 268 | 1.02e-124 | 359 |
| Msa0699700 | AT1G14700.4 | 62.055 | 253 | 89 | 3 | 13 | 263 | 41 | 288 | 5.79e-115 | 335 |
Find 77 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATAGGTGTGCTCTTT+TGG | 0.177187 | 4_4:-70484464 | None:intergenic |
| GAAATTGTGTGAGAACTTTC+TGG | 0.178152 | 4_4:+70483045 | Msa0699700:five_prime_UTR |
| TGCCAAAGCCTTGGGCTTCT+TGG | 0.192897 | 4_4:+70485827 | Msa0699700:three_prime_UTR |
| TTCAAGGGAAAGTGATTTAT+TGG | 0.232129 | 4_4:+70485752 | Msa0699700:three_prime_UTR |
| GCAGCTTCTTCCCATCTTAA+AGG | 0.266349 | 4_4:+70484970 | Msa0699700:CDS |
| GCCAAAGCCTTGGGCTTCTT+GGG | 0.301492 | 4_4:+70485828 | Msa0699700:three_prime_UTR |
| ATGTTTCATTAGTCCGAAAA+AGG | 0.301564 | 4_4:+70485659 | Msa0699700:three_prime_UTR |
| GGTAAAACTTCACTTCTTCC+AGG | 0.341025 | 4_4:-70485451 | None:intergenic |
| CCCCGAGCCTGCAAAAGATT+TGG | 0.369661 | 4_4:+70483862 | Msa0699700:CDS |
| AGGAAACTACAATCAATCTT+TGG | 0.388602 | 4_4:+70483258 | Msa0699700:CDS |
| TATAAATTTGTATGCACAAA+TGG | 0.389687 | 4_4:+70485685 | Msa0699700:three_prime_UTR |
| TCACTTTCCCTTGAATTGAA+TGG | 0.394588 | 4_4:-70485744 | None:intergenic |
| TCCCAAGAAGCCCAAGGCTT+TGG | 0.399030 | 4_4:-70485829 | None:intergenic |
| TGATCCATTTACCTTTAAGA+TGG | 0.409186 | 4_4:-70484981 | None:intergenic |
| TGGTGCAATCCAAGGCAAAA+TGG | 0.410813 | 4_4:+70484879 | Msa0699700:CDS |
| TCAATCTTTGGTCGCCCATC+AGG | 0.411471 | 4_4:+70483270 | Msa0699700:CDS |
| ACACTAGAATGGAAGATAAC+AGG | 0.413725 | 4_4:-70483112 | None:intergenic |
| GATTTGTAGATGGGAATTGT+AGG | 0.414707 | 4_4:+70483726 | Msa0699700:intron |
| TTATCGTGCAGAACTCTTGA+AGG | 0.422587 | 4_4:+70484511 | Msa0699700:CDS |
| AGAGCATTTGCCAAAGCCTT+GGG | 0.424646 | 4_4:+70485819 | Msa0699700:three_prime_UTR |
| ACACATCATCTTCTCTTGAA+TGG | 0.427032 | 4_4:+70483017 | Msa0699700:five_prime_UTR |
| GTAGAATGTTGATTCAGCTT+TGG | 0.428724 | 4_4:+70484859 | Msa0699700:intron |
| CGGACTAATGAAACATTTGT+GGG | 0.433274 | 4_4:-70485652 | None:intergenic |
| TTCCCTTGCCATTCAATTCA+AGG | 0.433642 | 4_4:+70485736 | Msa0699700:three_prime_UTR |
| TTCACTTCATTTCAAGCACT+TGG | 0.438374 | 4_4:-70485867 | None:intergenic |
| CAAAAGAGCACACCTATGAT+TGG | 0.439184 | 4_4:+70484465 | Msa0699700:CDS |
| CATTTCTTCACAAGTGGAGG+TGG | 0.441690 | 4_4:+70485392 | Msa0699700:CDS |
| TAGAGCATTTGCCAAAGCCT+TGG | 0.446500 | 4_4:+70485818 | Msa0699700:three_prime_UTR |
| TCGGACTAATGAAACATTTG+TGG | 0.455368 | 4_4:-70485653 | None:intergenic |
| ATCAAAAGTGTTGGGCATCA+TGG | 0.462730 | 4_4:+70484926 | Msa0699700:CDS |
| AGATGATGTGTGTGCATTGG+TGG | 0.466893 | 4_4:-70483005 | None:intergenic |
| CTGCAAAAGATTTGGTATAG+TGG | 0.480578 | 4_4:+70483870 | Msa0699700:CDS |
| AAGGACACCATTCCAATCAT+AGG | 0.489134 | 4_4:-70484477 | None:intergenic |
| TCCCTTGAATTGAATGGCAA+GGG | 0.491454 | 4_4:-70485738 | None:intergenic |
| ATCATACCATCAAAAGTGTT+GGG | 0.491747 | 4_4:+70484918 | Msa0699700:CDS |
| TCCCTTGCCATTCAATTCAA+GGG | 0.497676 | 4_4:+70485737 | Msa0699700:three_prime_UTR |
| TTTAGATGGTGTTCAAACCT+TGG | 0.498027 | 4_4:-70483184 | None:intergenic |
| CGATATCAAGTCATGGAACC+TGG | 0.498083 | 4_4:+70485433 | Msa0699700:CDS |
| TTTCAAGCACTTGGATGCCA+TGG | 0.499209 | 4_4:-70485858 | None:intergenic |
| AAGTTAAGAGATTGTTGTTG+TGG | 0.499896 | 4_4:-70483208 | None:intergenic |
| GTCGGAGATTGGGGAAGAAA+AGG | 0.511677 | 4_4:+70483238 | Msa0699700:CDS |
| TTGCTGCTGAGAAGCTTCCA+AGG | 0.511973 | 4_4:+70483167 | Msa0699700:CDS |
| TTCCCTTGAATTGAATGGCA+AGG | 0.515658 | 4_4:-70485739 | None:intergenic |
| GATCCATTTACCTTTAAGAT+GGG | 0.516464 | 4_4:-70484980 | None:intergenic |
| CATCATACCATCAAAAGTGT+TGG | 0.519638 | 4_4:+70484917 | Msa0699700:CDS |
| GAGAAAGCAATTGTTTGATG+AGG | 0.524781 | 4_4:-70485793 | None:intergenic |
| TTCAGCTTTGGTGCAATCCA+AGG | 0.528201 | 4_4:+70484871 | Msa0699700:CDS |
| ACAAATGATTCATAGAATGT+AGG | 0.528252 | 4_4:-70483825 | None:intergenic |
| GGAATTCATTTCTTCACAAG+TGG | 0.529011 | 4_4:+70485386 | Msa0699700:CDS |
| AGCGTAATACTACACTAGAA+TGG | 0.529661 | 4_4:-70483123 | None:intergenic |
| CAACATCACCCCTGTAGTCA+TGG | 0.535679 | 4_4:-70484018 | None:intergenic |
| GGGGTAAATGATTACCTGAT+GGG | 0.540759 | 4_4:-70483284 | None:intergenic |
| CACAAGTGGAGGTGGATCAA+AGG | 0.543166 | 4_4:+70485400 | Msa0699700:CDS |
| ATTCATTTCTTCACAAGTGG+AGG | 0.548786 | 4_4:+70485389 | Msa0699700:CDS |
| ACATGAATCCTTGTCCATCA+TGG | 0.549619 | 4_4:-70485472 | None:intergenic |
| AAGCTTCTCAGCAGCAACAA+TGG | 0.549652 | 4_4:-70483161 | None:intergenic |
| CAAGGCAAAATGGAAGATAG+TGG | 0.570741 | 4_4:+70484889 | Msa0699700:CDS |
| AGCACATAATTGACAACGAA+AGG | 0.573877 | 4_4:+70485274 | Msa0699700:CDS |
| TGATGTGTGTGCATTGGTGG+AGG | 0.576604 | 4_4:-70483002 | None:intergenic |
| TGGTTCTGAAAGACATGGCA+CGG | 0.577625 | 4_4:+70483065 | Msa0699700:exon |
| AATATTGATGCATACATCAA+CGG | 0.582530 | 4_4:+70485234 | Msa0699700:CDS |
| TTTGGGTAACCATGACTACA+GGG | 0.585069 | 4_4:+70484009 | Msa0699700:CDS |
| GCTTCTTGGGACTTGCACCA+TGG | 0.586041 | 4_4:+70485841 | Msa0699700:three_prime_UTR |
| TGGTAATACACAAGAGCTTG+AGG | 0.597820 | 4_4:+70484946 | Msa0699700:CDS |
| CACGATAAGATTCACGAGGA+AGG | 0.605639 | 4_4:-70484496 | None:intergenic |
| CTTTCTGGTTCTGAAAGACA+TGG | 0.607494 | 4_4:+70483060 | Msa0699700:exon |
| GGCAAAATGGAAGATAGTGG+TGG | 0.614472 | 4_4:+70484892 | Msa0699700:CDS |
| GAGCACACCTATGATTGGAA+TGG | 0.624719 | 4_4:+70484470 | Msa0699700:CDS |
| GGCGAGGCGATATCAAGTCA+TGG | 0.627535 | 4_4:+70485426 | Msa0699700:CDS |
| CAATTATGTGCTGCAAACAA+TGG | 0.630087 | 4_4:-70485263 | None:intergenic |
| GTGGAGGTGGATCAAAGGCA+TGG | 0.631356 | 4_4:+70485405 | Msa0699700:CDS |
| AGAAGATGATGTGTGTGCAT+TGG | 0.635325 | 4_4:-70483008 | None:intergenic |
| GGTGGATCAAAGGCATGGCG+AGG | 0.636737 | 4_4:+70485410 | Msa0699700:CDS |
| GCAAAATGGAAGATAGTGGT+GGG | 0.652491 | 4_4:+70484893 | Msa0699700:CDS |
| TGCAAGTCCCAAGAAGCCCA+AGG | 0.673004 | 4_4:-70485835 | None:intergenic |
| TTGGGTAACCATGACTACAG+GGG | 0.715140 | 4_4:+70484010 | Msa0699700:CDS |
| TCTGCACGATAAGATTCACG+AGG | 0.785903 | 4_4:-70484500 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAATAAATATTTTCATT+GGG | - | chr4_4:70483966-70483985 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAATATTTTCAT+TGG | - | chr4_4:70483967-70483986 | None:intergenic | 10.0% |
| !!! | TTAAAAACAAACATTTTATT+AGG | - | chr4_4:70484169-70484188 | None:intergenic | 10.0% |
| !!! | TAATAAAATGTTTGTTTTTA+AGG | + | chr4_4:70484168-70484187 | Msa0699700:intron | 10.0% |
| !!! | TTTTATAGAAAAGTATTTTA+CGG | + | chr4_4:70484439-70484458 | Msa0699700:CDS | 10.0% |
| !! | TGTCTATTACATATATAAAA+TGG | + | chr4_4:70483439-70483458 | Msa0699700:intron | 15.0% |
| !! | ATTACATATATAAAATGGTT+AGG | + | chr4_4:70483444-70483463 | Msa0699700:intron | 15.0% |
| !! | TTACATATATAAAATGGTTA+GGG | + | chr4_4:70483445-70483464 | Msa0699700:intron | 15.0% |
| !! | ACAGTTAATTAACAAATTAA+AGG | + | chr4_4:70483518-70483537 | Msa0699700:intron | 15.0% |
| !!! | TGCATTAGATATTTTTTAAA+AGG | - | chr4_4:70484127-70484146 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATATCTAATGC+AGG | + | chr4_4:70484126-70484145 | Msa0699700:intron | 15.0% |
| !!! | GTAAAATACTTTTCTATAAA+AGG | - | chr4_4:70484440-70484459 | None:intergenic | 15.0% |
| !!! | ATTTTCAATATCTAACATTT+TGG | + | chr4_4:70484724-70484743 | Msa0699700:intron | 15.0% |
| !! | AATACACACATAATTAAAAG+AGG | - | chr4_4:70483319-70483338 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTGATTTGTAGA+TGG | + | chr4_4:70483716-70483735 | Msa0699700:intron | 20.0% |
| !!! | TTTTTGTTTGATTTGTAGAT+GGG | + | chr4_4:70483717-70483736 | Msa0699700:intron | 20.0% |
| !!! | TATCTTTTTGTCTTAGAATT+GGG | - | chr4_4:70484057-70484076 | None:intergenic | 20.0% |
| !!! | TGGAATCAAATTTTATTTAG+AGG | - | chr4_4:70484195-70484214 | None:intergenic | 20.0% |
| !! | AAATTTGATTCCAAAAAATC+TGG | + | chr4_4:70484202-70484221 | Msa0699700:intron | 20.0% |
| !!! | TATTTTGTAACCAGATTTTT+TGG | - | chr4_4:70484215-70484234 | None:intergenic | 20.0% |
| !!! | AATTGTAGAATTTTTCTTTG+TGG | + | chr4_4:70484406-70484425 | Msa0699700:CDS | 20.0% |
| !! | ACATTATTTATTCTCTACTA+TGG | - | chr4_4:70484642-70484661 | None:intergenic | 20.0% |
| !!! | ACATAATTTTAATTTTGTGG+AGG | + | chr4_4:70485622-70485641 | Msa0699700:three_prime_UTR | 20.0% |
| !!! | CAAATTTATAGTTCCTTTTT+CGG | - | chr4_4:70485675-70485694 | None:intergenic | 20.0% |
| !! | TATAAATTTGTATGCACAAA+TGG | + | chr4_4:70485685-70485704 | Msa0699700:three_prime_UTR | 20.0% |
| !! | ACAACAATCTCTTAACTTTT+TGG | + | chr4_4:70483213-70483232 | Msa0699700:CDS | 25.0% |
| ! | ATATAAAATGGTTAGGGATT+TGG | + | chr4_4:70483451-70483470 | Msa0699700:intron | 25.0% |
| ! | ACAAATGATTCATAGAATGT+AGG | - | chr4_4:70483828-70483847 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGTTGCCAGTTT+TGG | + | chr4_4:70483991-70484010 | Msa0699700:intron | 25.0% |
| !!! | TTTTTTTTGTTGCCAGTTTT+GGG | + | chr4_4:70483992-70484011 | Msa0699700:intron | 25.0% |
| !! | CTATCTTTTTGTCTTAGAAT+TGG | - | chr4_4:70484058-70484077 | None:intergenic | 25.0% |
| !! | TTGAGATCTTTTATTCTTGA+TGG | + | chr4_4:70484091-70484110 | Msa0699700:CDS | 25.0% |
| ! | AAACACACGTTTATATTTCT+TGG | + | chr4_4:70484244-70484263 | Msa0699700:intron | 25.0% |
| ! | GATGTGAAGTAAAAAATATG+AGG | - | chr4_4:70485054-70485073 | None:intergenic | 25.0% |
| ! | AATATTGATGCATACATCAA+CGG | + | chr4_4:70485234-70485253 | Msa0699700:CDS | 25.0% |
| !!! | CGCACATAATTTTAATTTTG+TGG | + | chr4_4:70485619-70485638 | Msa0699700:three_prime_UTR | 25.0% |
| !!! | ATTGTTGTTGTGGTTTTAGA+TGG | - | chr4_4:70483201-70483220 | None:intergenic | 30.0% |
| ! | AAGTTAAGAGATTGTTGTTG+TGG | - | chr4_4:70483211-70483230 | None:intergenic | 30.0% |
| AGGAAACTACAATCAATCTT+TGG | + | chr4_4:70483258-70483277 | Msa0699700:CDS | 30.0% | |
| ATTAAAAGAGGATGGAGTTT+GGG | - | chr4_4:70483307-70483326 | None:intergenic | 30.0% | |
| AATTAAAAGAGGATGGAGTT+TGG | - | chr4_4:70483308-70483327 | None:intergenic | 30.0% | |
| CACACATAATTAAAAGAGGA+TGG | - | chr4_4:70483315-70483334 | None:intergenic | 30.0% | |
| !! | AAATGAGTTACTGACTTTAG+AGG | - | chr4_4:70483479-70483498 | None:intergenic | 30.0% |
| AGTGTAAAGTGAGAAAATGA+AGG | - | chr4_4:70483595-70483614 | None:intergenic | 30.0% | |
| ! | ATAGATTTTGTGATCTCAAC+TGG | + | chr4_4:70483762-70483781 | Msa0699700:CDS | 30.0% |
| ! | GGTGACAATTTTTACAAAGA+TGG | + | chr4_4:70483783-70483802 | Msa0699700:CDS | 30.0% |
| ! | TTTTACAAAGATGGTCTAGA+AGG | + | chr4_4:70483792-70483811 | Msa0699700:CDS | 30.0% |
| TAAGACAAAAAGATAGCAGA+TGG | + | chr4_4:70484062-70484081 | Msa0699700:CDS | 30.0% | |
| AAGACAAAAAGATAGCAGAT+GGG | + | chr4_4:70484063-70484082 | Msa0699700:CDS | 30.0% | |
| ! | AGATCTTTTATTCTTGATGG+AGG | + | chr4_4:70484094-70484113 | Msa0699700:CDS | 30.0% |
| AATATGCAAATTCAGACTTC+TGG | + | chr4_4:70484698-70484717 | Msa0699700:intron | 30.0% | |
| GTTAATTCTATCTGACATTC+TGG | + | chr4_4:70484829-70484848 | Msa0699700:intron | 30.0% | |
| !! | ATCATACCATCAAAAGTGTT+GGG | + | chr4_4:70484918-70484937 | Msa0699700:CDS | 30.0% |
| !! | GATCCATTTACCTTTAAGAT+GGG | - | chr4_4:70484983-70485002 | None:intergenic | 30.0% |
| ! | TGATCCATTTACCTTTAAGA+TGG | - | chr4_4:70484984-70485003 | None:intergenic | 30.0% |
| ! | TCAATATGAGAATGATAACG+TGG | - | chr4_4:70485008-70485027 | None:intergenic | 30.0% |
| TACATGGTAGTTAACATCAA+AGG | + | chr4_4:70485110-70485129 | Msa0699700:intron | 30.0% | |
| ! | TAAGAGTTACATGTTTGCTA+TGG | - | chr4_4:70485143-70485162 | None:intergenic | 30.0% |
| ATGCATCAATATTGTTTGAC+TGG | - | chr4_4:70485227-70485246 | None:intergenic | 30.0% | |
| ! | GTTGTATTCTATGACGTTTT+TGG | + | chr4_4:70485524-70485543 | Msa0699700:CDS | 30.0% |
| !!! | TGTCGCTTCTTTAAGTTTTT+TGG | - | chr4_4:70485576-70485595 | None:intergenic | 30.0% |
| ATGTTTCATTAGTCCGAAAA+AGG | + | chr4_4:70485659-70485678 | Msa0699700:three_prime_UTR | 30.0% | |
| TTCAAGGGAAAGTGATTTAT+TGG | + | chr4_4:70485752-70485771 | Msa0699700:three_prime_UTR | 30.0% | |
| ACACATCATCTTCTCTTGAA+TGG | + | chr4_4:70483017-70483036 | Msa0699700:five_prime_UTR | 35.0% | |
| GAAATTGTGTGAGAACTTTC+TGG | + | chr4_4:70483045-70483064 | Msa0699700:five_prime_UTR | 35.0% | |
| ACACTAGAATGGAAGATAAC+AGG | - | chr4_4:70483115-70483134 | None:intergenic | 35.0% | |
| AGCGTAATACTACACTAGAA+TGG | - | chr4_4:70483126-70483145 | None:intergenic | 35.0% | |
| TTTAGATGGTGTTCAAACCT+TGG | - | chr4_4:70483187-70483206 | None:intergenic | 35.0% | |
| !! | TCTCTTAACTTTTTGGTCGT+CGG | + | chr4_4:70483220-70483239 | Msa0699700:CDS | 35.0% |
| TTAAAAGAGGATGGAGTTTG+GGG | - | chr4_4:70483306-70483325 | None:intergenic | 35.0% | |
| GATTTGTAGATGGGAATTGT+AGG | + | chr4_4:70483726-70483745 | Msa0699700:intron | 35.0% | |
| ! | CACTATACCAAATCTTTTGC+AGG | - | chr4_4:70483872-70483891 | None:intergenic | 35.0% |
| ! | CTGCAAAAGATTTGGTATAG+TGG | + | chr4_4:70483870-70483889 | Msa0699700:CDS | 35.0% |
| ACAATTCCTGCACAAAAAAG+TGG | - | chr4_4:70484392-70484411 | None:intergenic | 35.0% | |
| AAAAGTTATCGAGTGTGTCA+CGG | + | chr4_4:70484611-70484630 | Msa0699700:intron | 35.0% | |
| !! | GTAGAATGTTGATTCAGCTT+TGG | + | chr4_4:70484859-70484878 | Msa0699700:intron | 35.0% |
| ! | CATCATACCATCAAAAGTGT+TGG | + | chr4_4:70484917-70484936 | Msa0699700:CDS | 35.0% |
| CTTCCCATCTTAAAGGTAAA+TGG | + | chr4_4:70484977-70484996 | Msa0699700:intron | 35.0% | |
| !! | GTTACATGTTTGCTATGGTT+CGG | - | chr4_4:70485138-70485157 | None:intergenic | 35.0% |
| TGGAAAGATAGTGTAGAAAG+TGG | - | chr4_4:70485207-70485226 | None:intergenic | 35.0% | |
| CAATTATGTGCTGCAAACAA+TGG | - | chr4_4:70485266-70485285 | None:intergenic | 35.0% | |
| AGCACATAATTGACAACGAA+AGG | + | chr4_4:70485274-70485293 | Msa0699700:CDS | 35.0% | |
| CTACGATGTTTAAGCAAACA+AGG | - | chr4_4:70485365-70485384 | None:intergenic | 35.0% | |
| TGTTTGCTTAAACATCGTAG+TGG | + | chr4_4:70485365-70485384 | Msa0699700:intron | 35.0% | |
| GGAATTCATTTCTTCACAAG+TGG | + | chr4_4:70485386-70485405 | Msa0699700:CDS | 35.0% | |
| ATTCATTTCTTCACAAGTGG+AGG | + | chr4_4:70485389-70485408 | Msa0699700:CDS | 35.0% | |
| ! | GAAGTGAAGTTTTACCATGA+TGG | + | chr4_4:70485458-70485477 | Msa0699700:CDS | 35.0% |
| !!! | AAGTTTTACCATGATGGACA+AGG | + | chr4_4:70485464-70485483 | Msa0699700:CDS | 35.0% |
| !!! | ATTCTATGACGTTTTTGGCA+AGG | + | chr4_4:70485529-70485548 | Msa0699700:CDS | 35.0% |
| CGGACTAATGAAACATTTGT+GGG | - | chr4_4:70485655-70485674 | None:intergenic | 35.0% | |
| TCGGACTAATGAAACATTTG+TGG | - | chr4_4:70485656-70485675 | None:intergenic | 35.0% | |
| TCACTTTCCCTTGAATTGAA+TGG | - | chr4_4:70485747-70485766 | None:intergenic | 35.0% | |
| GAGAAAGCAATTGTTTGATG+AGG | - | chr4_4:70485796-70485815 | None:intergenic | 35.0% | |
| TTCACTTCATTTCAAGCACT+TGG | - | chr4_4:70485870-70485889 | None:intergenic | 35.0% | |
| AGAAGATGATGTGTGTGCAT+TGG | - | chr4_4:70483011-70483030 | None:intergenic | 40.0% | |
| !! | CTTTCTGGTTCTGAAAGACA+TGG | + | chr4_4:70483060-70483079 | Msa0699700:exon | 40.0% |
| GGGGTAAATGATTACCTGAT+GGG | - | chr4_4:70483287-70483306 | None:intergenic | 40.0% | |
| TGGGGTAAATGATTACCTGA+TGG | - | chr4_4:70483288-70483307 | None:intergenic | 40.0% | |
| TGGAGTATAACTATCACACG+AGG | + | chr4_4:70483623-70483642 | Msa0699700:intron | 40.0% | |
| ! | TACCAAATCTTTTGCAGGCT+CGG | - | chr4_4:70483867-70483886 | None:intergenic | 40.0% |
| TAGTCATGGTTACCCAAAAC+TGG | - | chr4_4:70484007-70484026 | None:intergenic | 40.0% | |
| !! | TTTTGGGTAACCATGACTAC+AGG | + | chr4_4:70484008-70484027 | Msa0699700:CDS | 40.0% |
| TTTGGGTAACCATGACTACA+GGG | + | chr4_4:70484009-70484028 | Msa0699700:CDS | 40.0% | |
| !!! | TGCTTTCCACTTTTTTGTGC+AGG | + | chr4_4:70484383-70484402 | Msa0699700:intron | 40.0% |
| ! | CAATCATAGGTGTGCTCTTT+TGG | - | chr4_4:70484467-70484486 | None:intergenic | 40.0% |
| ! | CAAAAGAGCACACCTATGAT+TGG | + | chr4_4:70484465-70484484 | Msa0699700:CDS | 40.0% |
| AAGGACACCATTCCAATCAT+AGG | - | chr4_4:70484480-70484499 | None:intergenic | 40.0% | |
| TTATCGTGCAGAACTCTTGA+AGG | + | chr4_4:70484511-70484530 | Msa0699700:CDS | 40.0% | |
| ! | CACTATCTTCCATTTTGCCT+TGG | - | chr4_4:70484891-70484910 | None:intergenic | 40.0% |
| CAAGGCAAAATGGAAGATAG+TGG | + | chr4_4:70484889-70484908 | Msa0699700:CDS | 40.0% | |
| ! | GCAAAATGGAAGATAGTGGT+GGG | + | chr4_4:70484893-70484912 | Msa0699700:CDS | 40.0% |
| ! | ATGATGCCCAACACTTTTGA+TGG | - | chr4_4:70484927-70484946 | None:intergenic | 40.0% |
| !! | ATCAAAAGTGTTGGGCATCA+TGG | + | chr4_4:70484926-70484945 | Msa0699700:CDS | 40.0% |
| TGGTAATACACAAGAGCTTG+AGG | + | chr4_4:70484946-70484965 | Msa0699700:CDS | 40.0% | |
| TCACATCGAAAATGATTCCG+AGG | + | chr4_4:70485067-70485086 | Msa0699700:intron | 40.0% | |
| AAAATGATTCCGAGGACACA+TGG | + | chr4_4:70485075-70485094 | Msa0699700:intron | 40.0% | |
| !! | AAGCTTCACTTTTAGAGGTG+TGG | - | chr4_4:70485342-70485361 | None:intergenic | 40.0% |
| !! | CAAGGAAGCTTCACTTTTAG+AGG | - | chr4_4:70485347-70485366 | None:intergenic | 40.0% |
| GGTAAAACTTCACTTCTTCC+AGG | - | chr4_4:70485454-70485473 | None:intergenic | 40.0% | |
| ACATGAATCCTTGTCCATCA+TGG | - | chr4_4:70485475-70485494 | None:intergenic | 40.0% | |
| ! | TTGGCAAGGTTTTGCATAGA+TGG | + | chr4_4:70485543-70485562 | Msa0699700:CDS | 40.0% |
| TTCCCTTGCCATTCAATTCA+AGG | + | chr4_4:70485736-70485755 | Msa0699700:three_prime_UTR | 40.0% | |
| TCCCTTGCCATTCAATTCAA+GGG | + | chr4_4:70485737-70485756 | Msa0699700:three_prime_UTR | 40.0% | |
| TCCCTTGAATTGAATGGCAA+GGG | - | chr4_4:70485741-70485760 | None:intergenic | 40.0% | |
| TTCCCTTGAATTGAATGGCA+AGG | - | chr4_4:70485742-70485761 | None:intergenic | 40.0% | |
| AGATGATGTGTGTGCATTGG+TGG | - | chr4_4:70483008-70483027 | None:intergenic | 45.0% | |
| !! | TGGTTCTGAAAGACATGGCA+CGG | + | chr4_4:70483065-70483084 | Msa0699700:exon | 45.0% |
| AAGCTTCTCAGCAGCAACAA+TGG | - | chr4_4:70483164-70483183 | None:intergenic | 45.0% | |
| !! | ACTTTTTGGTCGTCGGAGAT+TGG | + | chr4_4:70483227-70483246 | Msa0699700:CDS | 45.0% |
| !! | CTTTTTGGTCGTCGGAGATT+GGG | + | chr4_4:70483228-70483247 | Msa0699700:CDS | 45.0% |
| !! | TTTTTGGTCGTCGGAGATTG+GGG | + | chr4_4:70483229-70483248 | Msa0699700:CDS | 45.0% |
| TCACTTTACACTAGCACTCG+TGG | + | chr4_4:70483603-70483622 | Msa0699700:intron | 45.0% | |
| ! | ACCAAATCTTTTGCAGGCTC+GGG | - | chr4_4:70483866-70483885 | None:intergenic | 45.0% |
| TTGGGTAACCATGACTACAG+GGG | + | chr4_4:70484010-70484029 | Msa0699700:CDS | 45.0% | |
| GAGCACACCTATGATTGGAA+TGG | + | chr4_4:70484470-70484489 | Msa0699700:CDS | 45.0% | |
| CACGATAAGATTCACGAGGA+AGG | - | chr4_4:70484499-70484518 | None:intergenic | 45.0% | |
| TCTGCACGATAAGATTCACG+AGG | - | chr4_4:70484503-70484522 | None:intergenic | 45.0% | |
| GTGCAGAACTCTTGAAGGTA+AGG | + | chr4_4:70484516-70484535 | Msa0699700:intron | 45.0% | |
| ! | TTCAGCTTTGGTGCAATCCA+AGG | + | chr4_4:70484871-70484890 | Msa0699700:CDS | 45.0% |
| TGGTGCAATCCAAGGCAAAA+TGG | + | chr4_4:70484879-70484898 | Msa0699700:CDS | 45.0% | |
| ! | GGCAAAATGGAAGATAGTGG+TGG | + | chr4_4:70484892-70484911 | Msa0699700:CDS | 45.0% |
| GCAGCTTCTTCCCATCTTAA+AGG | + | chr4_4:70484970-70484989 | Msa0699700:CDS | 45.0% | |
| ATGGCTTAGTGTCGCATACA+TGG | + | chr4_4:70485094-70485113 | Msa0699700:intron | 45.0% | |
| CATTTCTTCACAAGTGGAGG+TGG | + | chr4_4:70485392-70485411 | Msa0699700:CDS | 45.0% | |
| CGATATCAAGTCATGGAACC+TGG | + | chr4_4:70485433-70485452 | Msa0699700:CDS | 45.0% | |
| ! | TAGAGCATTTGCCAAAGCCT+TGG | + | chr4_4:70485818-70485837 | Msa0699700:three_prime_UTR | 45.0% |
| ! | AGAGCATTTGCCAAAGCCTT+GGG | + | chr4_4:70485819-70485838 | Msa0699700:three_prime_UTR | 45.0% |
| TTTCAAGCACTTGGATGCCA+TGG | - | chr4_4:70485861-70485880 | None:intergenic | 45.0% | |
| ! | TGATGTGTGTGCATTGGTGG+AGG | - | chr4_4:70483005-70483024 | None:intergenic | 50.0% |
| TTGCTGCTGAGAAGCTTCCA+AGG | + | chr4_4:70483167-70483186 | Msa0699700:CDS | 50.0% | |
| GTCGGAGATTGGGGAAGAAA+AGG | + | chr4_4:70483238-70483257 | Msa0699700:CDS | 50.0% | |
| TCAATCTTTGGTCGCCCATC+AGG | + | chr4_4:70483270-70483289 | Msa0699700:CDS | 50.0% | |
| ! | CCAAATCTTTTGCAGGCTCG+GGG | - | chr4_4:70483865-70483884 | None:intergenic | 50.0% |
| CAACATCACCCCTGTAGTCA+TGG | - | chr4_4:70484021-70484040 | None:intergenic | 50.0% | |
| GACACTAAGCCATGTGTCCT+CGG | - | chr4_4:70485087-70485106 | None:intergenic | 50.0% | |
| CACAAGTGGAGGTGGATCAA+AGG | + | chr4_4:70485400-70485419 | Msa0699700:CDS | 50.0% | |
| CCCCGAGCCTGCAAAAGATT+TGG | + | chr4_4:70483862-70483881 | Msa0699700:CDS | 55.0% | |
| GTGGAGGTGGATCAAAGGCA+TGG | + | chr4_4:70485405-70485424 | Msa0699700:CDS | 55.0% | |
| GGCGAGGCGATATCAAGTCA+TGG | + | chr4_4:70485426-70485445 | Msa0699700:CDS | 55.0% | |
| TGCCAAAGCCTTGGGCTTCT+TGG | + | chr4_4:70485827-70485846 | Msa0699700:three_prime_UTR | 55.0% | |
| GCCAAAGCCTTGGGCTTCTT+GGG | + | chr4_4:70485828-70485847 | Msa0699700:three_prime_UTR | 55.0% | |
| TCCCAAGAAGCCCAAGGCTT+TGG | - | chr4_4:70485832-70485851 | None:intergenic | 55.0% | |
| TGCAAGTCCCAAGAAGCCCA+AGG | - | chr4_4:70485838-70485857 | None:intergenic | 55.0% | |
| GCTTCTTGGGACTTGCACCA+TGG | + | chr4_4:70485841-70485860 | Msa0699700:three_prime_UTR | 55.0% | |
| ! | GGTGGATCAAAGGCATGGCG+AGG | + | chr4_4:70485410-70485429 | Msa0699700:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 70482992 | 70485912 | 70482992 | ID=Msa0699700;Name=Msa0699700 |
| chr4_4 | mRNA | 70482992 | 70485912 | 70482992 | ID=Msa0699700-mRNA-1;Parent=Msa0699700;Name=Msa0699700-mRNA-1;_AED=0.37;_eAED=0.37;_QI=87|1|1|1|1|1|7|305|341 |
| chr4_4 | exon | 70482992 | 70483291 | 70482992 | ID=Msa0699700-mRNA-1:exon:21329;Parent=Msa0699700-mRNA-1 |
| chr4_4 | exon | 70483735 | 70483891 | 70483735 | ID=Msa0699700-mRNA-1:exon:21330;Parent=Msa0699700-mRNA-1 |
| chr4_4 | exon | 70484008 | 70484115 | 70484008 | ID=Msa0699700-mRNA-1:exon:21331;Parent=Msa0699700-mRNA-1 |
| chr4_4 | exon | 70484405 | 70484532 | 70484405 | ID=Msa0699700-mRNA-1:exon:21332;Parent=Msa0699700-mRNA-1 |
| chr4_4 | exon | 70484863 | 70484991 | 70484863 | ID=Msa0699700-mRNA-1:exon:21333;Parent=Msa0699700-mRNA-1 |
| chr4_4 | exon | 70485228 | 70485295 | 70485228 | ID=Msa0699700-mRNA-1:exon:21334;Parent=Msa0699700-mRNA-1 |
| chr4_4 | exon | 70485385 | 70485912 | 70485385 | ID=Msa0699700-mRNA-1:exon:21335;Parent=Msa0699700-mRNA-1 |
| chr4_4 | five_prime_UTR | 70482992 | 70483078 | 70482992 | ID=Msa0699700-mRNA-1:five_prime_utr;Parent=Msa0699700-mRNA-1 |
| chr4_4 | CDS | 70483079 | 70483291 | 70483079 | ID=Msa0699700-mRNA-1:cds;Parent=Msa0699700-mRNA-1 |
| chr4_4 | CDS | 70483735 | 70483891 | 70483735 | ID=Msa0699700-mRNA-1:cds;Parent=Msa0699700-mRNA-1 |
| chr4_4 | CDS | 70484008 | 70484115 | 70484008 | ID=Msa0699700-mRNA-1:cds;Parent=Msa0699700-mRNA-1 |
| chr4_4 | CDS | 70484405 | 70484532 | 70484405 | ID=Msa0699700-mRNA-1:cds;Parent=Msa0699700-mRNA-1 |
| chr4_4 | CDS | 70484863 | 70484991 | 70484863 | ID=Msa0699700-mRNA-1:cds;Parent=Msa0699700-mRNA-1 |
| chr4_4 | CDS | 70485228 | 70485295 | 70485228 | ID=Msa0699700-mRNA-1:cds;Parent=Msa0699700-mRNA-1 |
| chr4_4 | CDS | 70485385 | 70485607 | 70485385 | ID=Msa0699700-mRNA-1:cds;Parent=Msa0699700-mRNA-1 |
| chr4_4 | three_prime_UTR | 70485608 | 70485912 | 70485608 | ID=Msa0699700-mRNA-1:three_prime_utr;Parent=Msa0699700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
