AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382500 MtrunA17_Chr3g0137751 94.688 320 10 3 1 314 2 320 0.0 617
Msa0382500 MtrunA17_Chr4g0037131 37.500 240 128 7 83 308 13 244 3.36e-41 144
Msa0382500 MtrunA17_Chr5g0405731 37.759 241 128 6 82 308 11 243 1.46e-40 142
Msa0382500 MtrunA17_Chr4g0030171 38.983 236 119 8 89 308 20 246 3.23e-37 133
Msa0382500 MtrunA17_Chr3g0124821 34.818 247 113 9 104 311 121 358 1.40e-29 116
Msa0382500 MtrunA17_Chr3g0129051 27.941 272 129 10 87 304 43 301 6.52e-22 94.0
Msa0382500 MtrunA17_Chr4g0053871 28.025 314 160 10 52 310 7 309 1.74e-21 92.8
Msa0382500 MtrunA17_Chr6g0467121 27.445 317 147 10 54 304 43 342 3.72e-21 92.8
Msa0382500 MtrunA17_Chr4g0013191 29.961 257 115 7 102 306 78 321 7.79e-21 91.3
Msa0382500 MtrunA17_Chr4g0038151 29.520 271 126 10 88 304 41 300 3.00e-20 89.4
Msa0382500 MtrunA17_Chr4g0013201 29.699 266 142 9 83 306 57 319 1.89e-19 87.4
Msa0382500 MtrunA17_Chr1g0188431 30.196 255 109 8 101 304 70 306 1.94e-19 87.0
Msa0382500 MtrunA17_Chr6g0477071 29.286 280 127 10 87 313 69 330 2.70e-19 87.0
Msa0382500 MtrunA17_Chr7g0225221 27.068 266 146 6 88 310 45 305 6.05e-19 85.9
Msa0382500 MtrunA17_Chr8g0364291 29.329 283 118 10 87 304 38 303 7.17e-19 85.5
Msa0382500 MtrunA17_Chr5g0405991 28.409 264 119 10 102 308 55 305 1.44e-18 84.7
Msa0382500 MtrunA17_Chr4g0068621 29.137 278 112 11 101 314 69 325 4.91e-18 83.2
Msa0382500 MtrunA17_Chr1g0157051 30.233 258 112 9 102 304 56 300 6.25e-18 82.8
Msa0382500 MtrunA17_Chr7g0244451 28.938 273 129 10 88 308 40 299 6.74e-18 82.8
Msa0382500 MtrunA17_Chr7g0244461 28.676 272 127 10 88 306 36 293 9.34e-18 82.0
Msa0382500 MtrunA17_Chr3g0106921 28.405 257 116 10 102 304 57 299 1.19e-17 82.0
Msa0382500 MtrunA17_Chr6g0467251 28.413 271 127 9 87 304 51 307 8.37e-17 80.1
Msa0382500 MtrunA17_Chr8g0371381 27.652 264 121 9 102 308 58 308 1.70e-16 78.6
Msa0382500 MtrunA17_Chr3g0128061 29.286 280 142 10 81 309 36 310 1.78e-16 78.6
Msa0382500 MtrunA17_Chr3g0114451 28.195 266 124 7 88 304 50 297 1.89e-16 78.6
Msa0382500 MtrunA17_Chr5g0401431 32.778 180 89 8 88 248 47 213 1.92e-16 78.6
Msa0382500 MtrunA17_Chr2g0320071 28.906 256 113 9 102 304 57 296 2.40e-16 78.2
Msa0382500 MtrunA17_Chr2g0320101 27.473 273 127 11 87 304 40 296 2.40e-16 78.2
Msa0382500 MtrunA17_Chr5g0438021 26.812 276 135 10 83 304 42 304 5.32e-16 77.4
Msa0382500 MtrunA17_Chr5g0404721 27.599 279 131 10 87 306 45 311 1.06e-15 76.6
Msa0382500 MtrunA17_Chr2g0292251 28.906 256 132 9 102 309 60 313 1.06e-15 76.6
Msa0382500 MtrunA17_Chr2g0320051 25.547 274 132 9 87 304 40 297 1.33e-15 76.3
Msa0382500 MtrunA17_Chr6g0451571 25.818 275 137 8 87 304 49 313 3.53e-15 75.1
Msa0382500 MtrunA17_Chr8g0372601 27.376 263 122 7 101 306 61 311 8.26e-15 73.9
Msa0382500 MtrunA17_Chr2g0278671 34.667 150 80 6 95 233 49 191 5.19e-14 71.6
Msa0382500 MtrunA17_Chr3g0129061 28.235 255 118 9 102 304 60 301 1.40e-13 70.1
Msa0382500 MtrunA17_Chr1g0155611 27.941 272 110 9 101 306 77 328 1.65e-13 70.1
Msa0382500 MtrunA17_Chr4g0072091 26.761 284 128 10 88 310 44 308 6.32e-13 68.6
Msa0382500 MtrunA17_Chr1g0148021 30.337 178 111 4 91 258 48 222 1.23e-12 67.4
Msa0382500 MtrunA17_Chr7g0258811 26.984 252 137 8 102 306 101 352 1.58e-12 67.4
Msa0382500 MtrunA17_Chr1g0213061 34.752 141 79 5 102 232 59 196 2.61e-12 66.6
Msa0382500 MtrunA17_Chr7g0254201 25.448 279 135 11 87 309 35 296 6.60e-12 65.5
Msa0382500 MtrunA17_Chr5g0432401 26.990 289 161 13 44 306 3 267 7.84e-12 64.7
Msa0382500 MtrunA17_Chr1g0194271 30.645 186 110 7 87 258 45 225 8.82e-12 65.1
Msa0382500 MtrunA17_Chr3g0106901 29.070 258 114 9 102 306 63 304 9.87e-12 64.7
Msa0382500 MtrunA17_Chr3g0136751 25.896 251 140 8 104 310 59 307 1.01e-11 64.7
Msa0382500 MtrunA17_Chr5g0426581 30.818 159 75 6 104 227 120 278 1.05e-11 65.1
Msa0382500 MtrunA17_Chr2g0292211 28.405 257 132 10 102 309 72 325 1.32e-11 64.7
Msa0382500 MtrunA17_Chr2g0292241 26.471 272 150 10 87 309 44 314 1.35e-11 64.7
Msa0382500 MtrunA17_Chr2g0292091 25.591 254 143 9 102 309 56 309 2.09e-11 63.9
Msa0382500 MtrunA17_Chr3g0129041 27.473 273 131 10 88 306 44 303 3.67e-11 63.2
Msa0382500 MtrunA17_Chr2g0299691 26.493 268 140 11 88 306 80 339 5.68e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382500 AT4G32320.1 65.714 280 84 4 37 314 60 329 3.21e-133 382
Msa0382500 AT3G09640.2 36.653 251 126 7 83 308 4 246 3.89e-39 138
Msa0382500 AT3G09640.1 36.653 251 126 7 83 308 4 246 3.89e-39 138
Msa0382500 AT4G35970.1 37.500 240 127 7 83 308 11 241 1.59e-38 137
Msa0382500 AT4G35000.1 37.551 245 131 7 83 313 12 248 3.44e-38 137
Msa0382500 AT1G07890.6 36.910 233 128 6 89 308 20 246 7.23e-37 132
Msa0382500 AT1G07890.2 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0382500 AT1G07890.8 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0382500 AT1G07890.4 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0382500 AT1G07890.7 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0382500 AT1G07890.1 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0382500 AT1G07890.3 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0382500 AT1G07890.5 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0382500 AT4G35970.2 37.727 220 114 7 83 288 11 221 8.07e-34 124
Msa0382500 AT4G08390.3 33.333 246 120 8 104 312 126 364 2.13e-29 115
Msa0382500 AT4G08390.2 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa0382500 AT4G08390.5 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa0382500 AT4G08390.1 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa0382500 AT1G77490.1 33.835 266 130 9 86 312 86 344 1.00e-28 114
Msa0382500 AT1G77490.2 33.835 266 130 9 86 312 86 344 1.12e-28 114
Msa0382500 AT4G08390.4 33.778 225 121 8 104 312 127 339 1.01e-24 102
Msa0382500 AT1G14550.1 30.909 275 120 12 88 306 42 302 2.01e-21 93.2
Msa0382500 AT1G14540.1 27.660 282 115 10 88 304 37 294 6.30e-20 89.0
Msa0382500 AT4G16270.1 31.179 263 108 9 101 304 81 329 8.79e-20 89.0
Msa0382500 AT5G47000.1 30.189 265 121 8 101 312 64 317 9.46e-20 88.6
Msa0382500 AT4G31760.1 29.688 256 124 9 104 310 63 311 5.37e-19 86.3
Msa0382500 AT5G40150.1 29.562 274 120 9 93 309 55 312 1.08e-18 85.5
Msa0382500 AT5G14130.1 29.329 283 129 8 86 310 46 315 3.77e-18 84.0
Msa0382500 AT3G28200.1 27.509 269 133 8 93 310 44 301 4.61e-18 83.6
Msa0382500 AT4G17690.1 30.153 262 120 8 101 310 57 307 5.55e-18 83.6
Msa0382500 AT4G33420.2 30.315 254 128 10 101 313 115 360 8.76e-18 83.6
Msa0382500 AT5G14130.2 29.329 283 129 8 86 310 87 356 9.04e-18 83.2
Msa0382500 AT4G33420.1 29.545 264 117 9 101 313 68 313 9.57e-18 82.8
Msa0382500 AT2G24800.1 26.459 257 132 8 104 310 65 314 2.22e-16 79.0
Msa0382500 AT3G50990.1 28.679 265 116 10 101 306 72 322 3.89e-16 78.2
Msa0382500 AT4G37520.1 29.670 273 111 9 105 313 62 317 4.36e-16 78.2
Msa0382500 AT4G37530.1 27.586 290 127 10 88 313 47 317 6.05e-16 77.8
Msa0382500 AT1G24110.1 25.949 316 153 10 61 314 15 311 6.54e-16 77.4
Msa0382500 AT5G42180.1 27.985 268 154 10 63 308 8 258 8.44e-16 77.0
Msa0382500 AT3G17070.1 26.616 263 133 10 95 304 63 318 2.70e-15 75.9
Msa0382500 AT4G37530.2 32.402 179 91 7 88 248 47 213 5.73e-15 74.3
Msa0382500 AT5G17820.1 25.243 309 150 10 54 304 7 292 1.70e-14 73.2
Msa0382500 AT5G05340.1 26.667 255 122 9 102 304 62 303 2.96e-14 72.8
Msa0382500 AT4G37520.2 29.455 275 110 10 103 313 60 314 3.78e-14 72.4
Msa0382500 AT5G06720.1 26.667 270 140 9 88 306 52 314 4.22e-14 72.4
Msa0382500 AT5G17820.2 25.243 309 150 10 54 304 60 345 5.90e-14 72.0
Msa0382500 AT2G18150.1 27.444 266 118 8 101 306 67 317 7.24e-14 71.6
Msa0382500 AT5G06730.1 25.912 274 143 10 87 306 48 315 1.12e-13 71.2
Msa0382500 AT2G22420.1 26.766 269 140 8 87 304 38 300 1.12e-13 70.9
Msa0382500 AT1G71695.1 26.199 271 136 8 87 304 59 318 1.35e-13 70.9
Msa0382500 AT3G17070.2 27.523 218 114 8 131 304 38 255 1.02e-12 67.8
Msa0382500 AT4G09010.2 32.061 131 55 5 104 200 51 181 2.08e-11 63.9
Msa0382500 AT4G09010.1 32.061 131 55 5 104 200 116 246 2.89e-11 63.9
Msa0382500 AT4G09010.3 32.061 131 55 5 104 200 163 293 5.72e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACATGACGGTTGTAATT+TGG 0.179181 3_1:-85122966 None:intergenic
TAACCAAAGTATTTACATTA+AGG 0.197456 3_1:+85127366 Msa0382500:three_prime_UTR
TTCATATTATAAGGTTCTTT+TGG 0.228709 3_1:+85125875 Msa0382500:CDS
CGCTCCGACCATGCTTCTTC+AGG 0.236229 3_1:+85123004 Msa0382500:CDS
GAGGAAACTCTTGATGCTTC+TGG 0.303467 3_1:+85125363 Msa0382500:CDS
AACAAGATATCTATCCTAAA+AGG 0.305705 3_1:+85122843 Msa0382500:five_prime_UTR
CTTTACCTTTGTTAGTATCC+TGG 0.313796 3_1:+85124949 Msa0382500:intron
GAGAAGCCATGGACGCCTTC+TGG 0.322202 3_1:+85125897 Msa0382500:CDS
AACCAAAGTATTTACATTAA+GGG 0.348545 3_1:+85127367 Msa0382500:three_prime_UTR
TTAGGATAGATATCTTGTTT+AGG 0.349280 3_1:-85122839 None:intergenic
ACTCTTGGAAGTAAAGGTTT+TGG 0.369606 3_1:+85125831 Msa0382500:CDS
CGTATTGTGCAGTGCGCATC+AGG 0.370162 3_1:+85122923 Msa0382500:CDS
CACCCTTAATGTAAATACTT+TGG 0.385557 3_1:-85127369 None:intergenic
AAGTGTTTATATTAATTTGT+TGG 0.386924 3_1:+85127409 Msa0382500:three_prime_UTR
GGCTGCAGGTGTGCTTCGTT+TGG 0.388465 3_1:+85123881 Msa0382500:CDS
GGAAGTTTCCCTTCAGGATC+AGG 0.389840 3_1:-85125339 None:intergenic
TCCTCGGGAAGTTTCCCTTC+AGG 0.392970 3_1:-85125345 None:intergenic
TATGTCAAGCTGGTGAATTC+TGG 0.399120 3_1:+85127225 Msa0382500:CDS
TTTGAAATTGATGACAATAC+AGG 0.426747 3_1:+85123924 Msa0382500:CDS
TTTACCTTTGTTAGTATCCT+GGG 0.437764 3_1:+85124950 Msa0382500:intron
AGTGGAATAGCTTATAAATC+AGG 0.438593 3_1:+85127253 Msa0382500:exon
ATATTAATTTGTTGGTCTGA+TGG 0.440040 3_1:+85127417 Msa0382500:three_prime_UTR
ACTTCGATCTTCTAATACTC+TGG 0.444660 3_1:+85127444 Msa0382500:three_prime_UTR
AAAGGAAAAGGAAAAGGAAA+AGG 0.452628 3_1:+85122861 Msa0382500:five_prime_UTR
TATGAATTGTCAAAAGAAGT+AGG 0.453434 3_1:-85125858 None:intergenic
TTTCAAAAGTTCCAGCATCA+TGG 0.457488 3_1:-85123908 None:intergenic
TTGTCTGGAGCTCACACTCT+TGG 0.477240 3_1:+85125816 Msa0382500:CDS
TTGAGGATGATGAATGCTTA+AGG 0.477644 3_1:+85126088 Msa0382500:CDS
ATCCTAAAAGGAAAAGGAAA+AGG 0.478683 3_1:+85122855 Msa0382500:five_prime_UTR
CAAGAACTAGTAGCTTTGTC+TGG 0.485206 3_1:+85125801 Msa0382500:CDS
GCGGACGTTATTGCTGTGGC+TGG 0.487431 3_1:+85124972 Msa0382500:CDS
ATATCTATCCTAAAAGGAAA+AGG 0.496884 3_1:+85122849 Msa0382500:five_prime_UTR
CATGACGGTTGTAATTTGGC+GGG 0.504477 3_1:-85122962 None:intergenic
GGGTGCTTACGGCATGGCGT+TGG 0.513752 3_1:-85123210 None:intergenic
TTGAGGAAGGTATTGACAAA+GGG 0.514007 3_1:+85123855 Msa0382500:CDS
ACATGACGGTTGTAATTTGG+CGG 0.514760 3_1:-85122963 None:intergenic
ATGAATTGTCAAAAGAAGTA+GGG 0.515097 3_1:-85125857 None:intergenic
TTCAGATCACGCACTTGTTG+AGG 0.515812 3_1:+85126071 Msa0382500:CDS
CCGAGCGAAACTGTGATAGT+AGG 0.518423 3_1:-85125023 None:intergenic
GTTGTTGTAGGTGGTATGAA+TGG 0.519310 3_1:+85124582 Msa0382500:intron
AAACAAGATGTCCCTTGAGT+TGG 0.519443 3_1:-85127287 None:intergenic
AGAAGCATCAAGAGTTTCCT+CGG 0.519712 3_1:-85125361 None:intergenic
CTGATGCGCACTGCACAATA+CGG 0.521753 3_1:-85122922 None:intergenic
TTGACAAAGGGAAAGGCTGC+AGG 0.522171 3_1:+85123867 Msa0382500:CDS
GCTCACACTCTTGGAAGTAA+AGG 0.522477 3_1:+85125825 Msa0382500:CDS
AGAAGCAAAGATATGAGTGA+GGG 0.525513 3_1:-85123180 None:intergenic
GAGAAGCAAAGATATGAGTG+AGG 0.527735 3_1:-85123181 None:intergenic
GTTGAGGAAGGTATTGACAA+AGG 0.532606 3_1:+85123854 Msa0382500:CDS
CACAGCAATAACGTCCGCCC+AGG 0.540378 3_1:-85124967 None:intergenic
CAGATAGATGCTATCCATCC+AGG 0.541954 3_1:+85124860 Msa0382500:CDS
ACTTTACCAGAAGGCGTCCA+TGG 0.549342 3_1:-85125903 None:intergenic
CTCACCTGAAGAAGCATGGT+CGG 0.559728 3_1:-85123008 None:intergenic
TCAACAAGTGCGTGATCTGA+AGG 0.564701 3_1:-85126069 None:intergenic
CTTGAAAGACCTGAAAATGC+TGG 0.570720 3_1:+85124621 Msa0382500:CDS
AGGTTTCAAGTAGTAGCAGT+AGG 0.580648 3_1:+85123111 Msa0382500:CDS
GGTGGTATGTCGACTATGAT+CGG 0.580931 3_1:+85126042 Msa0382500:intron
TTCTAATTAAACAAGAGTTG+AGG 0.581889 3_1:+85123838 Msa0382500:CDS
GCTGAAGCAGTTGAAGTATG+TGG 0.592512 3_1:+85124996 Msa0382500:CDS
AGTTGAAAGTTCCAACTCAA+GGG 0.598778 3_1:+85127276 Msa0382500:three_prime_UTR
GAAGCATCAAGAGTTTCCTC+GGG 0.599360 3_1:-85125360 None:intergenic
GAAGCAAAGATATGAGTGAG+GGG 0.603163 3_1:-85123179 None:intergenic
CCTACTATCACAGTTTCGCT+CGG 0.605954 3_1:+85125023 Msa0382500:CDS
CTCACTCACCTGAAGAAGCA+TGG 0.606221 3_1:-85123012 None:intergenic
AGAGAAAACAAGGACCTGGA+TGG 0.607635 3_1:-85124874 None:intergenic
GAGTTGAAAGTTCCAACTCA+AGG 0.610408 3_1:+85127275 Msa0382500:three_prime_UTR
ATTGTGCAGTGCGCATCAGG+TGG 0.617666 3_1:+85122926 Msa0382500:CDS
GAAGGTATTGACAAAGGGAA+AGG 0.621122 3_1:+85123860 Msa0382500:CDS
TGAGTGAGGGGAAGAAGACA+TGG 0.622960 3_1:-85123167 None:intergenic
AATTAAACAAGAGTTGAGGA+AGG 0.623996 3_1:+85123842 Msa0382500:CDS
CTGGGCGGACGTTATTGCTG+TGG 0.636998 3_1:+85124968 Msa0382500:CDS
AAGTAGTAGCAGTAGGAGAG+CGG 0.646507 3_1:+85123118 Msa0382500:CDS
TGGTGAATTCTGGTGTGAAG+TGG 0.657138 3_1:+85127235 Msa0382500:CDS
TTAACAGTTGACACACATGA+CGG 0.670912 3_1:-85122977 None:intergenic
TCCTGAAGGGAAACTTCCCG+AGG 0.679146 3_1:+85125344 Msa0382500:CDS
GAAGCAGTTGAAGTATGTGG+AGG 0.696962 3_1:+85124999 Msa0382500:CDS
ACCTTTGTTAGTATCCTGGG+CGG 0.708491 3_1:+85124953 Msa0382500:intron
GGTTCAAAACAAGCACACAA+CGG 0.722533 3_1:+85127465 Msa0382500:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCATTAAATCTATATTA+AGG + chr3_1:85123250-85123269 Msa0382500:intron 10.0%
!!! TTTTTTTTACTTTCTTTTAT+TGG + chr3_1:85123669-85123688 Msa0382500:intron 10.0%
!!! TTTTTTTACTTTCTTTTATT+GGG + chr3_1:85123670-85123689 Msa0382500:intron 10.0%
!! AATATGAATGAAAATATTAT+AGG - chr3_1:85125305-85125324 None:intergenic 10.0%
!!! AATATTTTCATTCATATTAA+TGG + chr3_1:85125307-85125326 Msa0382500:intron 10.0%
!! TAGATTTAATGAATTAATAC+AGG - chr3_1:85123245-85123264 None:intergenic 15.0%
!!! TTTTTTACTTTCTTTTATTG+GGG + chr3_1:85123671-85123690 Msa0382500:intron 15.0%
!! TTCAGTAAAAAAAATCAAAA+CGG - chr3_1:85124161-85124180 None:intergenic 15.0%
!!! GATATTTTTTTATGTTTTCT+TGG + chr3_1:85124447-85124466 Msa0382500:intron 15.0%
!!! AAAGGTAAAGTAAATTTTAT+TGG - chr3_1:85124939-85124958 None:intergenic 15.0%
!!! ATCATAACTTTTTTTTTAAG+AGG - chr3_1:85125481-85125500 None:intergenic 15.0%
!!! TTTTGACAATTCATATTATA+AGG + chr3_1:85125866-85125885 Msa0382500:CDS 15.0%
!!! ATTTTAAATTTCAACTAGAA+CGG - chr3_1:85126464-85126483 None:intergenic 15.0%
!!! TAAGGAATTTTTTTTTTTGA+AGG - chr3_1:85126529-85126548 None:intergenic 15.0%
!!! AAGTGTTTATATTAATTTGT+TGG + chr3_1:85127409-85127428 Msa0382500:three_prime_UTR 15.0%
!! TAATGAATTAATACAGGAAT+GGG - chr3_1:85123239-85123258 None:intergenic 20.0%
!! TTAATGAATTAATACAGGAA+TGG - chr3_1:85123240-85123259 None:intergenic 20.0%
!! AGCTCAAATAAAACAATTTA+AGG - chr3_1:85123454-85123473 None:intergenic 20.0%
!! AAATCTGAATCTTGTATAAA+AGG + chr3_1:85124031-85124050 Msa0382500:intron 20.0%
!!! GTTGAATATTATTCAGTTTT+AGG + chr3_1:85124096-85124115 Msa0382500:intron 20.0%
!! TCTGAGCAAAAAAAATAAAT+TGG + chr3_1:85124415-85124434 Msa0382500:intron 20.0%
!! TATTCAAGTAATAAACGTAA+AGG - chr3_1:85124705-85124724 None:intergenic 20.0%
!! TTCATGTAGATTTAATTCAT+GGG + chr3_1:85125245-85125264 Msa0382500:intron 20.0%
!! AATGAAAATATTATAGGCAA+AGG - chr3_1:85125299-85125318 None:intergenic 20.0%
!! TTCATTCATATTAATGGTAT+AGG + chr3_1:85125313-85125332 Msa0382500:intron 20.0%
!! TCATTCATATTAATGGTATA+GGG + chr3_1:85125314-85125333 Msa0382500:intron 20.0%
!!! TTTTATAGAAAGAATATTCG+CGG - chr3_1:85125532-85125551 None:intergenic 20.0%
!!! TTCATATTATAAGGTTCTTT+TGG + chr3_1:85125875-85125894 Msa0382500:CDS 20.0%
!! AACAAGCTAATAAATATGAT+AGG - chr3_1:85125960-85125979 None:intergenic 20.0%
!! AACAATTGAAAACAATACTT+TGG + chr3_1:85126283-85126302 Msa0382500:intron 20.0%
!! ATTAGTGATTAATTACTTCT+TGG + chr3_1:85126357-85126376 Msa0382500:intron 20.0%
!!! TTTTAAATTTCAACTAGAAC+GGG - chr3_1:85126463-85126482 None:intergenic 20.0%
!! ACATAAAAAAATGAATCCTA+AGG - chr3_1:85126971-85126990 None:intergenic 20.0%
!!! AACTTTATTTATTGAACAGA+TGG + chr3_1:85127148-85127167 Msa0382500:intron 20.0%
!!! AATACTTTGGTTAACTTTTT+GGG - chr3_1:85127359-85127378 None:intergenic 20.0%
!!! AAATACTTTGGTTAACTTTT+TGG - chr3_1:85127360-85127379 None:intergenic 20.0%
!!! TAACCAAAGTATTTACATTA+AGG + chr3_1:85127366-85127385 Msa0382500:three_prime_UTR 20.0%
!!! AACCAAAGTATTTACATTAA+GGG + chr3_1:85127367-85127386 Msa0382500:three_prime_UTR 20.0%
!! TTAGGATAGATATCTTGTTT+AGG - chr3_1:85122842-85122861 None:intergenic 25.0%
! AACAAGATATCTATCCTAAA+AGG + chr3_1:85122843-85122862 Msa0382500:five_prime_UTR 25.0%
! ATATCTATCCTAAAAGGAAA+AGG + chr3_1:85122849-85122868 Msa0382500:five_prime_UTR 25.0%
! AATTTACACTAATGATGTAG+AGG + chr3_1:85123091-85123110 Msa0382500:intron 25.0%
! AATCTATATTAAGGCCTATT+TGG + chr3_1:85123259-85123278 Msa0382500:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG - chr3_1:85123276-85123295 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATCT+TGG - chr3_1:85123370-85123389 None:intergenic 25.0%
! AATAAGCTGAAAATAGTTGA+TGG - chr3_1:85123533-85123552 None:intergenic 25.0%
! CTTATTTCCATAAACTCTTT+AGG + chr3_1:85123547-85123566 Msa0382500:intron 25.0%
! AATCTATCCTAAAGAGTTTA+TGG - chr3_1:85123557-85123576 None:intergenic 25.0%
!!! AAACTCTTTAGGATAGATTA+AGG + chr3_1:85123558-85123577 Msa0382500:intron 25.0%
! TTCTAATTAAACAAGAGTTG+AGG + chr3_1:85123838-85123857 Msa0382500:CDS 25.0%
!! TTTGAAATTGATGACAATAC+AGG + chr3_1:85123924-85123943 Msa0382500:CDS 25.0%
! AAAAAAAATCAAAACGGTAC+TGG - chr3_1:85124155-85124174 None:intergenic 25.0%
! AATTTCTTGATCACCTAATT+TGG + chr3_1:85124211-85124230 Msa0382500:intron 25.0%
! ATCAAGAAATTCAAAAAGTC+TGG - chr3_1:85124747-85124766 None:intergenic 25.0%
! CTTCATGTAGATTTAATTCA+TGG + chr3_1:85125244-85125263 Msa0382500:intron 25.0%
! CATTCATATTAATGGTATAG+GGG + chr3_1:85125315-85125334 Msa0382500:intron 25.0%
! ATTCATATTAATGGTATAGG+GGG + chr3_1:85125316-85125335 Msa0382500:intron 25.0%
! AACACAAATGCAAAGTAAAT+GGG - chr3_1:85125440-85125459 None:intergenic 25.0%
! TAACACAAATGCAAAGTAAA+TGG - chr3_1:85125441-85125460 None:intergenic 25.0%
! ATGTGCTAATATTTGTCATT+GGG + chr3_1:85125699-85125718 Msa0382500:intron 25.0%
! TGTGAAAGAAAAGTTTCAAA+TGG - chr3_1:85125776-85125795 None:intergenic 25.0%
! ATGAATTGTCAAAAGAAGTA+GGG - chr3_1:85125860-85125879 None:intergenic 25.0%
! TATGAATTGTCAAAAGAAGT+AGG - chr3_1:85125861-85125880 None:intergenic 25.0%
! TCACAAAAAATAAATGCAGT+GGG - chr3_1:85126163-85126182 None:intergenic 25.0%
! TTCACAAAAAATAAATGCAG+TGG - chr3_1:85126164-85126183 None:intergenic 25.0%
!! ATGTCAGTTTTCAAATAGTA+AGG + chr3_1:85126482-85126501 Msa0382500:intron 25.0%
!!! TTTTTTTTTGAAGGAGGTTA+AGG - chr3_1:85126520-85126539 None:intergenic 25.0%
!!! GGAATTTTTTTTTTTGAAGG+AGG - chr3_1:85126526-85126545 None:intergenic 25.0%
!! AATATATAAAAGGAGCATAC+AGG + chr3_1:85126654-85126673 Msa0382500:intron 25.0%
!! ATATATAAAAGGAGCATACA+GGG + chr3_1:85126655-85126674 Msa0382500:intron 25.0%
!!! TATTTTAGAAATGTAGAGGT+GGG - chr3_1:85126787-85126806 None:intergenic 25.0%
!!! ATGGTATTTTAGAAATGTAG+AGG - chr3_1:85126791-85126810 None:intergenic 25.0%
! TTAGTCATTTACTACATAAG+AGG - chr3_1:85127033-85127052 None:intergenic 25.0%
!! ATACTTTGGTTAACTTTTTG+GGG - chr3_1:85127358-85127377 None:intergenic 25.0%
!!! ATATTAATTTGTTGGTCTGA+TGG + chr3_1:85127417-85127436 Msa0382500:three_prime_UTR 25.0%
ATCCTAAAAGGAAAAGGAAA+AGG + chr3_1:85122855-85122874 Msa0382500:five_prime_UTR 30.0%
! TTCCTTTTCCTTTTCCTTTT+AGG - chr3_1:85122860-85122879 None:intergenic 30.0%
AAAGGAAAAGGAAAAGGAAA+AGG + chr3_1:85122861-85122880 Msa0382500:five_prime_UTR 30.0%
ATTAATACAGGAATGGGATT+GGG - chr3_1:85123233-85123252 None:intergenic 30.0%
AATTAATACAGGAATGGGAT+TGG - chr3_1:85123234-85123253 None:intergenic 30.0%
!!! CATGTCATAAGCTGTTTTTA+TGG - chr3_1:85123311-85123330 None:intergenic 30.0%
ATAGCAAGTGTTTATGCTAA+TGG - chr3_1:85123480-85123499 None:intergenic 30.0%
TGTGTGTATTACTATTGGAT+TGG + chr3_1:85123697-85123716 Msa0382500:intron 30.0%
! TTACTATTGGATTGGATTAG+AGG + chr3_1:85123705-85123724 Msa0382500:intron 30.0%
! TACTATTGGATTGGATTAGA+GGG + chr3_1:85123706-85123725 Msa0382500:intron 30.0%
! AGAAGATATTCTTTTGTACC+TGG - chr3_1:85123822-85123841 None:intergenic 30.0%
AATTAAACAAGAGTTGAGGA+AGG + chr3_1:85123842-85123861 Msa0382500:CDS 30.0%
CAAGATTCAGATTTCTTCAT+CGG - chr3_1:85124025-85124044 None:intergenic 30.0%
AATAAAATACCCGTGTTGAA+AGG + chr3_1:85124058-85124077 Msa0382500:intron 30.0%
TAATATCAGTCCTTTCAACA+CGG - chr3_1:85124071-85124090 None:intergenic 30.0%
TAGGTGATCAAGAAATTAAG+CGG - chr3_1:85124208-85124227 None:intergenic 30.0%
! GAGTTTTACATAGTACAACA+GGG - chr3_1:85124251-85124270 None:intergenic 30.0%
TTGTACTATGTAAAACTCCA+CGG + chr3_1:85124253-85124272 Msa0382500:intron 30.0%
ATATAAAATCAGGTTTACCG+TGG - chr3_1:85124273-85124292 None:intergenic 30.0%
CAACTTGGCAATATAAAATC+AGG - chr3_1:85124283-85124302 None:intergenic 30.0%
CATAGACATTACATACAACT+TGG - chr3_1:85124298-85124317 None:intergenic 30.0%
GTCTATGTCTATTATCAATG+TGG + chr3_1:85124311-85124330 Msa0382500:intron 30.0%
ATAGTTTCATCACAAGTAAC+AGG + chr3_1:85124472-85124491 Msa0382500:intron 30.0%
TTGTCTGTTTATGTTGTTGT+AGG + chr3_1:85124570-85124589 Msa0382500:intron 30.0%
TGGTCTGAAAAAATCAGTAA+AGG + chr3_1:85124641-85124660 Msa0382500:intron 30.0%
ATAAACGTAAAGGAGAAGAA+GGG - chr3_1:85124695-85124714 None:intergenic 30.0%
AATAAACGTAAAGGAGAAGA+AGG - chr3_1:85124696-85124715 None:intergenic 30.0%
!!! CATCTTATATTTTAATCGCC+AGG + chr3_1:85124776-85124795 Msa0382500:intron 30.0%
! GGATTTATCACATGTTGTTT+AGG + chr3_1:85124817-85124836 Msa0382500:intron 30.0%
ACAAATTACCAGAGAAAACA+AGG - chr3_1:85124887-85124906 None:intergenic 30.0%
TTTACCTTTGTTAGTATCCT+GGG + chr3_1:85124950-85124969 Msa0382500:intron 30.0%
TGCTTGTCATATCCTATATA+CGG - chr3_1:85125093-85125112 None:intergenic 30.0%
TTGTTCTTTATACAACAGCA+TGG - chr3_1:85125201-85125220 None:intergenic 30.0%
!! GAAGCTGTTTCTTTCTAAAA+TGG - chr3_1:85125228-85125247 None:intergenic 30.0%
CAATGACAAATATTAGCACA+TGG - chr3_1:85125700-85125719 None:intergenic 30.0%
CATGTGCTAATATTTGTCAT+TGG + chr3_1:85125698-85125717 Msa0382500:intron 30.0%
ATGCATGAGCAAAATTATTC+TGG - chr3_1:85125747-85125766 None:intergenic 30.0%
CACAAAAAATAAATGCAGTG+GGG - chr3_1:85126162-85126181 None:intergenic 30.0%
ACTAGGATCTCAATTCAAAA+AGG + chr3_1:85126194-85126213 Msa0382500:intron 30.0%
! GGAGGTTAAGGAAATTTTTA+TGG - chr3_1:85126508-85126527 None:intergenic 30.0%
ATTCCTTAACCAAATAGTGA+TGG + chr3_1:85126541-85126560 Msa0382500:intron 30.0%
!! ATTTTAGAAATGTAGAGGTG+GGG - chr3_1:85126786-85126805 None:intergenic 30.0%
!! GTATTTTAGAAATGTAGAGG+TGG - chr3_1:85126788-85126807 None:intergenic 30.0%
! TTTACTTCTGAAAACGTGTA+TGG - chr3_1:85126810-85126829 None:intergenic 30.0%
ACACATCTGAAAAAATGTTG+AGG + chr3_1:85126900-85126919 Msa0382500:intron 30.0%
CACATCTGAAAAAATGTTGA+GGG + chr3_1:85126901-85126920 Msa0382500:intron 30.0%
ACATCTGAAAAAATGTTGAG+GGG + chr3_1:85126902-85126921 Msa0382500:intron 30.0%
!!! GAAAGTTTTAAAATGCTCAC+AGG + chr3_1:85126929-85126948 Msa0382500:intron 30.0%
! ACTACATAAGAGGTTCTTTT+AGG - chr3_1:85127023-85127042 None:intergenic 30.0%
AGTGGAATAGCTTATAAATC+AGG + chr3_1:85127253-85127272 Msa0382500:exon 30.0%
CACCCTTAATGTAAATACTT+TGG - chr3_1:85127372-85127391 None:intergenic 30.0%
TTAACAGTTGACACACATGA+CGG - chr3_1:85122980-85122999 None:intergenic 35.0%
AGAAGCAAAGATATGAGTGA+GGG - chr3_1:85123183-85123202 None:intergenic 35.0%
CAGCTTATGACATGTTCATT+AGG + chr3_1:85123317-85123336 Msa0382500:intron 35.0%
! AGCGCTTCATTCTAAAGAAA+TGG + chr3_1:85123629-85123648 Msa0382500:intron 35.0%
GGCATTGTGTGTATTACTAT+TGG + chr3_1:85123692-85123711 Msa0382500:intron 35.0%
CTTCATAATGCGTAAAAGCA+AGG - chr3_1:85123798-85123817 None:intergenic 35.0%
! TTTTACGCATTATGAAGACC+AGG + chr3_1:85123801-85123820 Msa0382500:intron 35.0%
!! TTGAGGAAGGTATTGACAAA+GGG + chr3_1:85123855-85123874 Msa0382500:CDS 35.0%
TTTCAAAAGTTCCAGCATCA+TGG - chr3_1:85123911-85123930 None:intergenic 35.0%
AATATCAGTCCTTTCAACAC+GGG - chr3_1:85124070-85124089 None:intergenic 35.0%
! GGAGTTTTACATAGTACAAC+AGG - chr3_1:85124252-85124271 None:intergenic 35.0%
ATGTAATTCAAGCGTTTGCT+CGG + chr3_1:85124359-85124378 Msa0382500:intron 35.0%
TGTATGGGTAAATTTGCACA+AGG + chr3_1:85124392-85124411 Msa0382500:intron 35.0%
TCTGTTTATGTTGTTGTAGG+TGG + chr3_1:85124573-85124592 Msa0382500:intron 35.0%
!! TTTTTCAGACCAGCATTTTC+AGG - chr3_1:85124633-85124652 None:intergenic 35.0%
TAAACGTAAAGGAGAAGAAG+GGG - chr3_1:85124694-85124713 None:intergenic 35.0%
CTTTACCTTTGTTAGTATCC+TGG + chr3_1:85124949-85124968 Msa0382500:intron 35.0%
ACCAGACAATCATCAACTTA+CGG - chr3_1:85125062-85125081 None:intergenic 35.0%
!! ACTTGTTGTTTGTCATCCTT+AGG - chr3_1:85125131-85125150 None:intergenic 35.0%
CATGGACATAACTCAAAAGT+AGG - chr3_1:85125183-85125202 None:intergenic 35.0%
AAGAGATGCTTCCAGAAAAA+AGG + chr3_1:85125390-85125409 Msa0382500:CDS 35.0%
!!! CTCACGAAAAACCTTTTTTC+TGG - chr3_1:85125404-85125423 None:intergenic 35.0%
CTTTGCATTTGTGTTATGCA+TGG + chr3_1:85125445-85125464 Msa0382500:intron 35.0%
! GTGTTATGCATGGATGATTT+TGG + chr3_1:85125455-85125474 Msa0382500:intron 35.0%
AGTTATGGATGATCAGCAAT+TGG - chr3_1:85125560-85125579 None:intergenic 35.0%
ACGACTCTCATGTTAAGTTA+TGG - chr3_1:85125575-85125594 None:intergenic 35.0%
!!! TGTTGCTCTGGTTTTAACTT+AGG - chr3_1:85125639-85125658 None:intergenic 35.0%
AGTTAAAACCAGAGCAACAA+AGG + chr3_1:85125640-85125659 Msa0382500:intron 35.0%
! ACTCTTGGAAGTAAAGGTTT+TGG + chr3_1:85125831-85125850 Msa0382500:CDS 35.0%
!! TGAGTTGTTACTTTACCAGA+AGG - chr3_1:85125915-85125934 None:intergenic 35.0%
CTGTATAAAAGAGAACCAGT+GGG - chr3_1:85126023-85126042 None:intergenic 35.0%
TTGAGGATGATGAATGCTTA+AGG + chr3_1:85126088-85126107 Msa0382500:CDS 35.0%
GTTCCATCACTATTTGGTTA+AGG - chr3_1:85126547-85126566 None:intergenic 35.0%
!! TTTCTGGTTCCATCACTATT+TGG - chr3_1:85126553-85126572 None:intergenic 35.0%
GGGTCAAACACATACAATAT+GGG + chr3_1:85126583-85126602 Msa0382500:intron 35.0%
GGTCAAACACATACAATATG+GGG + chr3_1:85126584-85126603 Msa0382500:intron 35.0%
TACAGGGAAAATTACAGAGT+TGG + chr3_1:85126671-85126690 Msa0382500:intron 35.0%
ACAGGGAAAATTACAGAGTT+GGG + chr3_1:85126672-85126691 Msa0382500:intron 35.0%
CAAAGGTGAACATTGGTATT+GGG - chr3_1:85126713-85126732 None:intergenic 35.0%
AAAATGCATACCCTGGTTAA+AGG + chr3_1:85126750-85126769 Msa0382500:intron 35.0%
ATCCATATAAGCAAACAACG+AGG + chr3_1:85126995-85127014 Msa0382500:intron 35.0%
GCATGTGACAATTAATATCC+CGG + chr3_1:85127065-85127084 Msa0382500:intron 35.0%
CTCGTAAGTAATGCAAATTG+AGG - chr3_1:85127128-85127147 None:intergenic 35.0%
AGTTGAAAGTTCCAACTCAA+GGG + chr3_1:85127276-85127295 Msa0382500:three_prime_UTR 35.0%
ACTTCGATCTTCTAATACTC+TGG + chr3_1:85127444-85127463 Msa0382500:three_prime_UTR 35.0%
ACATGACGGTTGTAATTTGG+CGG - chr3_1:85122966-85122985 None:intergenic 40.0%
CACACATGACGGTTGTAATT+TGG - chr3_1:85122969-85122988 None:intergenic 40.0%
AAAACACTACCCAGCAGATT+TGG - chr3_1:85123052-85123071 None:intergenic 40.0%
! AGGTTTCAAGTAGTAGCAGT+AGG + chr3_1:85123111-85123130 Msa0382500:CDS 40.0%
GAAGCAAAGATATGAGTGAG+GGG - chr3_1:85123182-85123201 None:intergenic 40.0%
GAGAAGCAAAGATATGAGTG+AGG - chr3_1:85123184-85123203 None:intergenic 40.0%
GCTATAATTGACATGCTCGT+TGG + chr3_1:85123759-85123778 Msa0382500:intron 40.0%
!! GTTGAGGAAGGTATTGACAA+AGG + chr3_1:85123854-85123873 Msa0382500:CDS 40.0%
!! GAAGGTATTGACAAAGGGAA+AGG + chr3_1:85123860-85123879 Msa0382500:CDS 40.0%
! TACAGGTATACATCTAGCTC+AGG + chr3_1:85123941-85123960 Msa0382500:intron 40.0%
! ACAGGTATACATCTAGCTCA+GGG + chr3_1:85123942-85123961 Msa0382500:intron 40.0%
CATGTGCTTGATGCCAAATT+AGG - chr3_1:85124227-85124246 None:intergenic 40.0%
CTAATTTGGCATCAAGCACA+TGG + chr3_1:85124225-85124244 Msa0382500:intron 40.0%
GTTGTTGTAGGTGGTATGAA+TGG + chr3_1:85124582-85124601 Msa0382500:intron 40.0%
CTTGAAAGACCTGAAAATGC+TGG + chr3_1:85124621-85124640 Msa0382500:CDS 40.0%
!! ACCGTAAGTTGATGATTGTC+TGG + chr3_1:85125058-85125077 Msa0382500:intron 40.0%
TGGTACTCTAGTCCGTATAT+AGG + chr3_1:85125078-85125097 Msa0382500:intron 40.0%
ATCCTTAGGAGAAAAGATCG+CGG - chr3_1:85125117-85125136 None:intergenic 40.0%
!! AGAAGCATCAAGAGTTTCCT+CGG - chr3_1:85125364-85125383 None:intergenic 40.0%
TAAAACCAGAGCAACAAAGG+AGG + chr3_1:85125643-85125662 Msa0382500:intron 40.0%
! ATTTTCCTCCTTTGTTGCTC+TGG - chr3_1:85125651-85125670 None:intergenic 40.0%
!! CAAGAACTAGTAGCTTTGTC+TGG + chr3_1:85125801-85125820 Msa0382500:CDS 40.0%
!!! TTTTTTTCACTCTCACCCAC+TGG + chr3_1:85126005-85126024 Msa0382500:intron 40.0%
CCTGTATAAAAGAGAACCAG+TGG - chr3_1:85126024-85126043 None:intergenic 40.0%
!!! CCACTGGTTCTCTTTTATAC+AGG + chr3_1:85126021-85126040 Msa0382500:intron 40.0%
!! CTGGTTCTCTTTTATACAGG+TGG + chr3_1:85126024-85126043 Msa0382500:intron 40.0%
GTTAGTAAGTTCCTTGTGTC+TGG + chr3_1:85126391-85126410 Msa0382500:intron 40.0%
AAACAGATACTCCAGACACA+AGG - chr3_1:85126405-85126424 None:intergenic 40.0%
GGGGTCAAACACATACAATA+TGG + chr3_1:85126582-85126601 Msa0382500:intron 40.0%
! GTGAACATTGGTATTGGGTA+TGG - chr3_1:85126708-85126727 None:intergenic 40.0%
GCAAAGGTGAACATTGGTAT+TGG - chr3_1:85126714-85126733 None:intergenic 40.0%
GCAAATGCAAAGGTGAACAT+TGG - chr3_1:85126720-85126739 None:intergenic 40.0%
CAAGGGAAATGCAAATGCAA+AGG - chr3_1:85126730-85126749 None:intergenic 40.0%
! ACCAGGGTATGCATTTTCAA+GGG - chr3_1:85126747-85126766 None:intergenic 40.0%
! AACCAGGGTATGCATTTTCA+AGG - chr3_1:85126748-85126767 None:intergenic 40.0%
AAATTTGCCGCCTTTAACCA+GGG - chr3_1:85126763-85126782 None:intergenic 40.0%
! TCTAGATGCCATAGTTTGTC+TGG + chr3_1:85126832-85126851 Msa0382500:intron 40.0%
TGAAAAAATGTTGAGGGGCA+TGG + chr3_1:85126907-85126926 Msa0382500:intron 40.0%
AAATGCTCACAGGTGTTTGT+TGG + chr3_1:85126939-85126958 Msa0382500:intron 40.0%
AATGCTCACAGGTGTTTGTT+GGG + chr3_1:85126940-85126959 Msa0382500:intron 40.0%
CACCTCGTTGTTTGCTTATA+TGG - chr3_1:85127000-85127019 None:intergenic 40.0%
ACAATTAATATCCCGGTGCA+CGG + chr3_1:85127072-85127091 Msa0382500:intron 40.0%
CAAAAACGTGTATGTCAAGC+TGG + chr3_1:85127215-85127234 Msa0382500:CDS 40.0%
TATGTCAAGCTGGTGAATTC+TGG + chr3_1:85127225-85127244 Msa0382500:CDS 40.0%
GAGTTGAAAGTTCCAACTCA+AGG + chr3_1:85127275-85127294 Msa0382500:three_prime_UTR 40.0%
AAACAAGATGTCCCTTGAGT+TGG - chr3_1:85127290-85127309 None:intergenic 40.0%
GGTTCAAAACAAGCACACAA+CGG + chr3_1:85127465-85127484 Msa0382500:three_prime_UTR 40.0%
CATGACGGTTGTAATTTGGC+GGG - chr3_1:85122965-85122984 None:intergenic 45.0%
CTTGTACCTCCAAATCTGCT+GGG + chr3_1:85123040-85123059 Msa0382500:intron 45.0%
AAGTAGTAGCAGTAGGAGAG+CGG + chr3_1:85123118-85123137 Msa0382500:CDS 45.0%
!!! CGTTTGGTTTTCCATGATGC+TGG + chr3_1:85123897-85123916 Msa0382500:CDS 45.0%
! CAGGTATACATCTAGCTCAG+GGG + chr3_1:85123943-85123962 Msa0382500:intron 45.0%
! TCTTCATCGGTTGACTTTGC+TGG - chr3_1:85124012-85124031 None:intergenic 45.0%
!! AAAACGGTACTGGCAGTATG+TGG - chr3_1:85124145-85124164 None:intergenic 45.0%
CTCGGCAATTGCATCTGTAT+GGG + chr3_1:85124377-85124396 Msa0382500:intron 45.0%
CAGATAGATGCTATCCATCC+AGG + chr3_1:85124860-85124879 Msa0382500:CDS 45.0%
AGAGAAAACAAGGACCTGGA+TGG - chr3_1:85124877-85124896 None:intergenic 45.0%
!!! ATCCAGGTCCTTGTTTTCTC+TGG + chr3_1:85124876-85124895 Msa0382500:intron 45.0%
TACCAGAGAAAACAAGGACC+TGG - chr3_1:85124881-85124900 None:intergenic 45.0%
ACCTTTGTTAGTATCCTGGG+CGG + chr3_1:85124953-85124972 Msa0382500:intron 45.0%
GCTGAAGCAGTTGAAGTATG+TGG + chr3_1:85124996-85125015 Msa0382500:CDS 45.0%
GAAGCAGTTGAAGTATGTGG+AGG + chr3_1:85124999-85125018 Msa0382500:CDS 45.0%
CCTACTATCACAGTTTCGCT+CGG + chr3_1:85125023-85125042 Msa0382500:CDS 45.0%
! AACCGCGATCTTTTCTCCTA+AGG + chr3_1:85125112-85125131 Msa0382500:intron 45.0%
! GAAGCATCAAGAGTTTCCTC+GGG - chr3_1:85125363-85125382 None:intergenic 45.0%
GAGGAAACTCTTGATGCTTC+TGG + chr3_1:85125363-85125382 Msa0382500:CDS 45.0%
GCTCACACTCTTGGAAGTAA+AGG + chr3_1:85125825-85125844 Msa0382500:CDS 45.0%
!! AGGTTCTTTTGGAGAAGCCA+TGG + chr3_1:85125886-85125905 Msa0382500:CDS 45.0%
! GGTGGTATGTCGACTATGAT+CGG + chr3_1:85126042-85126061 Msa0382500:intron 45.0%
TCAACAAGTGCGTGATCTGA+AGG - chr3_1:85126072-85126091 None:intergenic 45.0%
! TTCAGATCACGCACTTGTTG+AGG + chr3_1:85126071-85126090 Msa0382500:CDS 45.0%
TTGTGAAGCAGTCAAGCACT+AGG + chr3_1:85126177-85126196 Msa0382500:intron 45.0%
TCCCTTGAAAATGCATACCC+TGG + chr3_1:85126743-85126762 Msa0382500:intron 45.0%
ATGCATACCCTGGTTAAAGG+CGG + chr3_1:85126753-85126772 Msa0382500:intron 45.0%
GAAATTTGCCGCCTTTAACC+AGG - chr3_1:85126764-85126783 None:intergenic 45.0%
GCACACTTCCAGACAAACTA+TGG - chr3_1:85126843-85126862 None:intergenic 45.0%
! TGTTTGTTGGGCTTAGCCTT+AGG + chr3_1:85126952-85126971 Msa0382500:intron 45.0%
TGGTGAATTCTGGTGTGAAG+TGG + chr3_1:85127235-85127254 Msa0382500:CDS 45.0%
!! TTAATCTAAATATTATTTAA+AGG - chr3_1:85126223-85126242 None:intergenic 5.0%
!! TTATTAAGTAAATATATAAA+AGG + chr3_1:85126644-85126663 Msa0382500:intron 5.0%
CTGATGCGCACTGCACAATA+CGG - chr3_1:85122925-85122944 None:intergenic 50.0%
! CTCACCTGAAGAAGCATGGT+CGG - chr3_1:85123011-85123030 None:intergenic 50.0%
CTCACTCACCTGAAGAAGCA+TGG - chr3_1:85123015-85123034 None:intergenic 50.0%
CATGCTTCTTCAGGTGAGTG+AGG + chr3_1:85123013-85123032 Msa0382500:intron 50.0%
! CCAGCAGATTTGGAGGTACA+AGG - chr3_1:85123042-85123061 None:intergenic 50.0%
CCTTGTACCTCCAAATCTGC+TGG + chr3_1:85123039-85123058 Msa0382500:intron 50.0%
ACACTACCCAGCAGATTTGG+AGG - chr3_1:85123049-85123068 None:intergenic 50.0%
TGAGTGAGGGGAAGAAGACA+TGG - chr3_1:85123170-85123189 None:intergenic 50.0%
GGAATGGGATTGGGTGCTTA+CGG - chr3_1:85123224-85123243 None:intergenic 50.0%
! GGATTGGATTAGAGGGAGTG+AGG + chr3_1:85123713-85123732 Msa0382500:intron 50.0%
! TTGGATTAGAGGGAGTGAGG+AGG + chr3_1:85123716-85123735 Msa0382500:intron 50.0%
TTGACAAAGGGAAAGGCTGC+AGG + chr3_1:85123867-85123886 Msa0382500:CDS 50.0%
GCTCGGCAATTGCATCTGTA+TGG + chr3_1:85124376-85124395 Msa0382500:intron 50.0%
TCCGCCCAGGATACTAACAA+AGG - chr3_1:85124957-85124976 None:intergenic 50.0%
CCGAGCGAAACTGTGATAGT+AGG - chr3_1:85125026-85125045 None:intergenic 50.0%
GGAAGTTTCCCTTCAGGATC+AGG - chr3_1:85125342-85125361 None:intergenic 50.0%
! TTGTCTGGAGCTCACACTCT+TGG + chr3_1:85125816-85125835 Msa0382500:CDS 50.0%
!! ACTTTACCAGAAGGCGTCCA+TGG - chr3_1:85125906-85125925 None:intergenic 50.0%
TGGAACCAGAAACTTGCGTC+AGG + chr3_1:85126561-85126580 Msa0382500:intron 50.0%
GGAACCAGAAACTTGCGTCA+GGG + chr3_1:85126562-85126581 Msa0382500:intron 50.0%
GAACCAGAAACTTGCGTCAG+GGG + chr3_1:85126563-85126582 Msa0382500:intron 50.0%
!! AGTGTGCTTTGAGACGACAC+AGG + chr3_1:85126856-85126875 Msa0382500:intron 50.0%
CGTATTGTGCAGTGCGCATC+AGG + chr3_1:85122923-85122942 Msa0382500:CDS 55.0%
ATTGTGCAGTGCGCATCAGG+TGG + chr3_1:85122926-85122945 Msa0382500:CDS 55.0%
ACTGAGACGTTAGCTGAGCC+TGG - chr3_1:85124797-85124816 None:intergenic 55.0%
AGGCTCAGCTAACGTCTCAG+TGG + chr3_1:85124796-85124815 Msa0382500:intron 55.0%
TATAGGGGGCCTGATCCTGA+AGG + chr3_1:85125330-85125349 Msa0382500:intron 55.0%
ATAGGGGGCCTGATCCTGAA+GGG + chr3_1:85125331-85125350 Msa0382500:intron 55.0%
TCCTGAAGGGAAACTTCCCG+AGG + chr3_1:85125344-85125363 Msa0382500:CDS 55.0%
TCCTCGGGAAGTTTCCCTTC+AGG - chr3_1:85125348-85125367 None:intergenic 55.0%
TGACCCCTGACGCAAGTTTC+TGG - chr3_1:85126569-85126588 None:intergenic 55.0%
TGCATACACATGCCGTGCAC+CGG - chr3_1:85127087-85127106 None:intergenic 55.0%
CGCTCCGACCATGCTTCTTC+AGG + chr3_1:85123004-85123023 Msa0382500:CDS 60.0%
GGGATTGGGTGCTTACGGCA+TGG - chr3_1:85123219-85123238 None:intergenic 60.0%
GGCTGCAGGTGTGCTTCGTT+TGG + chr3_1:85123881-85123900 Msa0382500:CDS 60.0%
CACAGCAATAACGTCCGCCC+AGG - chr3_1:85124970-85124989 None:intergenic 60.0%
CTGGGCGGACGTTATTGCTG+TGG + chr3_1:85124968-85124987 Msa0382500:CDS 60.0%
GCGGACGTTATTGCTGTGGC+TGG + chr3_1:85124972-85124991 Msa0382500:CDS 60.0%
GAGAAGCCATGGACGCCTTC+TGG + chr3_1:85125897-85125916 Msa0382500:CDS 60.0%
GCATACACATGCCGTGCACC+GGG - chr3_1:85127086-85127105 None:intergenic 60.0%
GGGTGCTTACGGCATGGCGT+TGG - chr3_1:85123213-85123232 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85122839 85127493 85122839 ID=Msa0382500;Name=Msa0382500
chr3_1 mRNA 85122839 85127493 85122839 ID=Msa0382500-mRNA-1;Parent=Msa0382500;Name=Msa0382500-mRNA-1;_AED=0.28;_eAED=0.28;_QI=63|0.88|0.9|1|1|1|10|224|314
chr3_1 exon 85122839 85123025 85122839 ID=Msa0382500-mRNA-1:exon:22271;Parent=Msa0382500-mRNA-1
chr3_1 exon 85123111 85123222 85123111 ID=Msa0382500-mRNA-1:exon:22272;Parent=Msa0382500-mRNA-1
chr3_1 exon 85123818 85123945 85123818 ID=Msa0382500-mRNA-1:exon:22273;Parent=Msa0382500-mRNA-1
chr3_1 exon 85124592 85124656 85124592 ID=Msa0382500-mRNA-1:exon:22274;Parent=Msa0382500-mRNA-1
chr3_1 exon 85124839 85124881 85124839 ID=Msa0382500-mRNA-1:exon:22275;Parent=Msa0382500-mRNA-1
chr3_1 exon 85124964 85125060 85124964 ID=Msa0382500-mRNA-1:exon:22276;Parent=Msa0382500-mRNA-1
chr3_1 exon 85125335 85125418 85125335 ID=Msa0382500-mRNA-1:exon:22277;Parent=Msa0382500-mRNA-1
chr3_1 exon 85125797 85125918 85125797 ID=Msa0382500-mRNA-1:exon:22278;Parent=Msa0382500-mRNA-1
chr3_1 exon 85126043 85126109 85126043 ID=Msa0382500-mRNA-1:exon:22279;Parent=Msa0382500-mRNA-1
chr3_1 exon 85127167 85127493 85127167 ID=Msa0382500-mRNA-1:exon:22280;Parent=Msa0382500-mRNA-1
chr3_1 five_prime_UTR 85122839 85122901 85122839 ID=Msa0382500-mRNA-1:five_prime_utr;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85122902 85123025 85122902 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85123111 85123222 85123111 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85123818 85123945 85123818 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85124592 85124656 85124592 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85124839 85124881 85124839 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85124964 85125060 85124964 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85125335 85125418 85125335 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85125797 85125918 85125797 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85126043 85126109 85126043 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 CDS 85127167 85127269 85127167 ID=Msa0382500-mRNA-1:cds;Parent=Msa0382500-mRNA-1
chr3_1 three_prime_UTR 85127270 85127493 85127270 ID=Msa0382500-mRNA-1:three_prime_utr;Parent=Msa0382500-mRNA-1
Gene Sequence

>Msa0382500

ATGTGTTCTAGAGTGAGTAACCGTATTGTGCAGTGCGCATCAGGTGGCGAAAGCAGTTATCCCGCCAAATTACAACCGTCATGTGTGTCAACTGTTAAGTTTCGCTCCGACCATGCTTCTTCAGAGGTTTCAAGTAGTAGCAGTAGGAGAGCGGTAATATTCAGCAGCATAGCTACGTTGCCATGTCTTCTTCCCCTCACTCATATCTTTGCTTCTCTTCAAGCCAACGCCATGCCACCAGGTACAAAAGAATATCTTCTAATTAAACAAGAGTTGAGGAAGGTATTGACAAAGGGAAAGGCTGCAGGTGTGCTTCGTTTGGTTTTCCATGATGCTGGAACTTTTGAAATTGATGACAATACAGGTGGTATGAATGGCTCTGTAGTCTATGAACTTGAAAGACCTGAAAATGCTGGTCTGAAAAAATCAGTTCTACAAAAAGCAAAGACTCAGATAGATGCTATCCATCCAGTATCCTGGGCGGACGTTATTGCTGTGGCTGGAGCTGAAGCAGTTGAAGTATGTGGAGGTCCTACTATCACAGTTTCGCTCGGCAGACAAGACTCACCGGGGCCTGATCCTGAAGGGAAACTTCCCGAGGAAACTCTTGATGCTTCTGGTTTGAAGAGATGCTTCCAGAAAAAAGGTTTTTCAACACAAGAACTAGTAGCTTTGTCTGGAGCTCACACTCTTGGAAGTAAAGGTTTTGGAAGCCCTACTTCTTTTGACAATTCATATTATAAGGTTCTTTTGGAGAAGCCATGGACGCCTTCTGGTGGTATGTCGACTATGATCGGTCTTCCTTCAGATCACGCACTTGTTGAGGATGATGAATGCTTAAGATGGATTAAAAAATACGCAGAGAATGAGAATATGTTCTTTGAAGACTTCAAAAACGTGTATGTCAAGCTGGTGAATTCTGGTGTGAAGTGGAATAGCTTATAA
Protein sequence

>Msa0382500

MCSRVSNRIVQCASGGESSYPAKLQPSCVSTVKFRSDHASSEVSSSSSRRAVIFSSIATLPCLLPLTHIFASLQANAMPPGTKEYLLIKQELRKVLTKGKAAGVLRLVFHDAGTFEIDDNTGGMNGSVVYELERPENAGLKKSVLQKAKTQIDAIHPVSWADVIAVAGAEAVEVCGGPTITVSLGRQDSPGPDPEGKLPEETLDASGLKRCFQKKGFSTQELVALSGAHTLGSKGFGSPTSFDNSYYKVLLEKPWTPSGGMSTMIGLPSDHALVEDDECLRWIKKYAENENMFFEDFKNVYVKLVNSGVKWNSL*