Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616350 | XP_039685619.1 | 94.379 | 338 | 17 | 2 | 1 | 338 | 1 | 336 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616350 | sp|Q8VYZ2|PPA8_ARATH | 61.538 | 325 | 124 | 1 | 8 | 332 | 5 | 328 | 5.49e-146 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0616350 | 0.807289 | 5.435373e-50 | -8.615850e-47 |
| Msa0094420 | Msa0616350 | 0.805688 | 1.182925e-49 | -8.615850e-47 |
| Msa0103060 | Msa0616350 | 0.801829 | 7.485936e-49 | -8.615850e-47 |
| Msa0615850 | Msa0616350 | 0.805754 | 1.145630e-49 | -8.615850e-47 |
| Msa0616350 | Msa0622390 | 0.802739 | 4.862557e-49 | -8.615850e-47 |
| Msa0616350 | Msa0640880 | 0.839174 | 1.855303e-57 | -8.615850e-47 |
| Msa0616350 | Msa0653710 | 0.808102 | 3.652408e-50 | -8.615850e-47 |
| Msa0616350 | Msa0681890 | 0.811262 | 7.644490e-51 | -8.615850e-47 |
| Msa0616350 | Msa0698900 | 0.817906 | 2.585974e-52 | -8.615850e-47 |
| Msa0616350 | Msa0699700 | 0.966006 | 2.392885e-125 | -8.615850e-47 |
| Msa0616350 | Msa0702070 | 0.805928 | 1.053100e-49 | -8.615850e-47 |
| Msa0616350 | Msa0706380 | 0.803747 | 3.007002e-49 | -8.615850e-47 |
| Msa0616350 | Msa0707780 | 0.808340 | 3.250282e-50 | -8.615850e-47 |
| Msa0616350 | Msa0740420 | 0.810132 | 1.342044e-50 | -8.615850e-47 |
| Msa0616350 | Msa0793060 | 0.802040 | 6.774718e-49 | -8.615850e-47 |
| Msa0616350 | Msa0820670 | 0.810593 | 1.067269e-50 | -8.615850e-47 |
| Msa0616350 | Msa0990520 | 0.825179 | 5.399067e-54 | -8.615850e-47 |
| Msa0616350 | Msa0992570 | 0.810258 | 1.260561e-50 | -8.615850e-47 |
| Msa0616350 | Msa0992590 | 0.805490 | 1.302058e-49 | -8.615850e-47 |
| Msa0616350 | Msa1002040 | 0.808956 | 2.399794e-50 | -8.615850e-47 |
| Msa0616350 | Msa1022310 | 0.813563 | 2.402386e-51 | -8.615850e-47 |
| Msa0616350 | Msa1030280 | 0.810517 | 1.108442e-50 | -8.615850e-47 |
| Msa0616350 | Msa1061180 | 0.811027 | 8.594359e-51 | -8.615850e-47 |
| Msa0616350 | Msa1106560 | 0.804971 | 1.671925e-49 | -8.615850e-47 |
| Msa0616350 | Msa1138600 | 0.801825 | 7.499710e-49 | -8.615850e-47 |
| Msa0616350 | Msa1157160 | 0.804819 | 1.798646e-49 | -8.615850e-47 |
| Msa0616350 | Msa1284030 | 0.800896 | 1.162364e-48 | -8.615850e-47 |
| Msa0616350 | Msa1325980 | 0.806579 | 7.680772e-50 | -8.615850e-47 |
| Msa0616350 | Msa1352290 | 0.811256 | 7.665749e-51 | -8.615850e-47 |
| Msa0616350 | Msa1367940 | 0.820099 | 8.203743e-53 | -8.615850e-47 |
| Msa0616350 | Msa1381130 | 0.816422 | 5.575599e-52 | -8.615850e-47 |
| Msa0616350 | Msa1406230 | 0.813271 | 2.785064e-51 | -8.615850e-47 |
| Msa0616350 | Msa1435470 | 0.803787 | 2.950499e-49 | -8.615850e-47 |
| Msa0616350 | Msa1458920 | 0.819086 | 1.396532e-52 | -8.615850e-47 |
| Msa0125230 | Msa0616350 | 0.823415 | 1.402147e-53 | -8.615850e-47 |
| Msa0185390 | Msa0616350 | 0.817685 | 2.901547e-52 | -8.615850e-47 |
| Msa0222070 | Msa0616350 | 0.814938 | 1.193828e-51 | -8.615850e-47 |
| Msa0222120 | Msa0616350 | 0.815527 | 8.833610e-52 | -8.615850e-47 |
| Msa0225010 | Msa0616350 | 0.808838 | 2.544272e-50 | -8.615850e-47 |
| Msa0227290 | Msa0616350 | 0.814358 | 1.604276e-51 | -8.615850e-47 |
| Msa0227490 | Msa0616350 | 0.810706 | 1.008519e-50 | -8.615850e-47 |
| Msa0382500 | Msa0616350 | 0.804563 | 2.034624e-49 | -8.615850e-47 |
| Msa0417630 | Msa0616350 | 0.812443 | 4.228479e-51 | -8.615850e-47 |
| Msa0432680 | Msa0616350 | 0.811447 | 6.969882e-51 | -8.615850e-47 |
| Msa0253410 | Msa0616350 | 0.810411 | 1.168259e-50 | -8.615850e-47 |
| Msa0253980 | Msa0616350 | 0.800765 | 1.235837e-48 | -8.615850e-47 |
| Msa0263620 | Msa0616350 | 0.812914 | 3.335275e-51 | -8.615850e-47 |
| Msa0320540 | Msa0616350 | 0.800511 | 1.392661e-48 | -8.615850e-47 |
| Msa0344070 | Msa0616350 | 0.805698 | 1.177324e-49 | -8.615850e-47 |
| Msa0524120 | Msa0616350 | 0.801571 | 8.454406e-49 | -8.615850e-47 |
| Msa0535450 | Msa0616350 | 0.829751 | 4.319224e-55 | -8.615850e-47 |
| Msa0542040 | Msa0616350 | 0.809023 | 2.322181e-50 | -8.615850e-47 |
| Msa0562490 | Msa0616350 | 0.815866 | 7.423551e-52 | -8.615850e-47 |
| Msa0574170 | Msa0616350 | 0.802776 | 4.778752e-49 | -8.615850e-47 |
| Msa0576420 | Msa0616350 | 0.817102 | 3.925324e-52 | -8.615850e-47 |
| Msa0600390 | Msa0616350 | 0.833260 | 5.908295e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616350 | MtrunA17_Chr8g0375821 | 85.799 | 338 | 47 | 1 | 1 | 338 | 38 | 374 | 0.0 | 602 |
| Msa0616350 | MtrunA17_Chr8g0375781 | 81.953 | 338 | 60 | 1 | 1 | 338 | 1 | 337 | 0.0 | 578 |
| Msa0616350 | MtrunA17_Chr8g0375791 | 87.732 | 269 | 26 | 2 | 1 | 263 | 1 | 268 | 1.96e-171 | 480 |
| Msa0616350 | MtrunA17_Chr6g0479451 | 60.714 | 336 | 121 | 3 | 2 | 337 | 6 | 330 | 2.39e-145 | 413 |
| Msa0616350 | MtrunA17_Chr8g0375761 | 61.129 | 319 | 123 | 1 | 19 | 337 | 8 | 325 | 7.57e-144 | 409 |
| Msa0616350 | MtrunA17_Chr8g0393271 | 63.158 | 304 | 112 | 0 | 34 | 337 | 37 | 340 | 1.47e-143 | 409 |
| Msa0616350 | MtrunA17_Chr8g0375901 | 67.790 | 267 | 9 | 3 | 72 | 338 | 1 | 190 | 6.82e-116 | 333 |
| Msa0616350 | MtrunA17_Chr8g0375921 | 76.000 | 100 | 24 | 0 | 239 | 338 | 64 | 163 | 1.61e-50 | 166 |
| Msa0616350 | MtrunA17_Chr8g0375921 | 56.296 | 135 | 36 | 5 | 1 | 135 | 1 | 112 | 8.04e-33 | 119 |
| Msa0616350 | MtrunA17_Chr8g0375811 | 92.857 | 70 | 4 | 1 | 269 | 338 | 6 | 74 | 2.50e-38 | 131 |
| Msa0616350 | MtrunA17_Chr8g0375891 | 82.692 | 52 | 9 | 0 | 72 | 123 | 47 | 98 | 1.70e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616350 | AT2G01890.1 | 61.538 | 325 | 124 | 1 | 8 | 332 | 5 | 328 | 5.58e-147 | 418 |
| Msa0616350 | AT1G14700.1 | 60.606 | 330 | 120 | 5 | 13 | 339 | 41 | 363 | 8.58e-145 | 414 |
| Msa0616350 | AT3G17790.1 | 56.627 | 332 | 137 | 3 | 7 | 334 | 5 | 333 | 4.74e-143 | 408 |
| Msa0616350 | AT2G01880.1 | 61.635 | 318 | 119 | 3 | 18 | 333 | 8 | 324 | 2.31e-142 | 406 |
| Msa0616350 | AT1G14700.2 | 60.000 | 330 | 120 | 6 | 13 | 339 | 41 | 361 | 8.33e-142 | 406 |
| Msa0616350 | AT1G25230.1 | 60.000 | 310 | 118 | 1 | 36 | 339 | 27 | 336 | 1.62e-138 | 397 |
| Msa0616350 | AT1G25230.3 | 60.000 | 310 | 118 | 1 | 36 | 339 | 50 | 359 | 3.53e-138 | 397 |
| Msa0616350 | AT1G14700.3 | 65.428 | 269 | 90 | 2 | 72 | 339 | 1 | 267 | 1.87e-130 | 374 |
| Msa0616350 | AT2G01890.3 | 66.031 | 262 | 89 | 0 | 72 | 333 | 1 | 262 | 1.30e-129 | 371 |
| Msa0616350 | AT2G01890.2 | 56.308 | 325 | 113 | 2 | 8 | 332 | 5 | 300 | 1.54e-125 | 362 |
| Msa0616350 | AT1G25230.2 | 61.567 | 268 | 103 | 0 | 72 | 339 | 1 | 268 | 5.32e-125 | 360 |
| Msa0616350 | AT1G14700.4 | 62.055 | 253 | 89 | 3 | 13 | 263 | 41 | 288 | 5.86e-115 | 335 |
Find 77 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATAGGTGTGCTCTTT+TGG | 0.177187 | 4_2:-66159795 | None:intergenic |
| GAAATTGTGTGAGAACTTTC+TGG | 0.178152 | 4_2:+66158371 | Msa0616350:five_prime_UTR |
| TGCCAAAGCCTTGGGCTTCT+TGG | 0.192897 | 4_2:+66161158 | Msa0616350:three_prime_UTR |
| TTCAAGGGAAAGTGATTTAT+TGG | 0.232129 | 4_2:+66161083 | Msa0616350:three_prime_UTR |
| GCAGCTTCTTCCCATCTTAA+AGG | 0.266349 | 4_2:+66160301 | Msa0616350:CDS |
| GCCAAAGCCTTGGGCTTCTT+GGG | 0.301492 | 4_2:+66161159 | Msa0616350:three_prime_UTR |
| ATGTTTCATTAGTCCGAAAA+AGG | 0.301564 | 4_2:+66160990 | Msa0616350:three_prime_UTR |
| GGTAAAACTTCACTTCTTCC+AGG | 0.341025 | 4_2:-66160782 | None:intergenic |
| CCCCGAGCCTGCAAAAGATT+TGG | 0.369661 | 4_2:+66159188 | Msa0616350:CDS |
| AGGAAACTACAATCAATCTT+TGG | 0.388602 | 4_2:+66158584 | Msa0616350:CDS |
| TATAAATTTGTATGCACAAA+TGG | 0.389687 | 4_2:+66161016 | Msa0616350:three_prime_UTR |
| TCACTTTCCCTTGAATTGAA+TGG | 0.394588 | 4_2:-66161075 | None:intergenic |
| TCCCAAGAAGCCCAAGGCTT+TGG | 0.399030 | 4_2:-66161160 | None:intergenic |
| TGATCCATTTACCTTTAAGA+TGG | 0.409186 | 4_2:-66160312 | None:intergenic |
| TGGTGCAATCCAAGGCAAAA+TGG | 0.410813 | 4_2:+66160210 | Msa0616350:CDS |
| TCAATCTTTGGTCGCCCATC+AGG | 0.411471 | 4_2:+66158596 | Msa0616350:CDS |
| ACACTAGAATGGAAGATAAC+AGG | 0.413725 | 4_2:-66158438 | None:intergenic |
| GATTTGTAGATGGGAATTGT+AGG | 0.414707 | 4_2:+66159052 | Msa0616350:intron |
| TTATCGTGCAGAACTCTTGA+AGG | 0.422587 | 4_2:+66159842 | Msa0616350:CDS |
| AGAGCATTTGCCAAAGCCTT+GGG | 0.424646 | 4_2:+66161150 | Msa0616350:three_prime_UTR |
| ACACATCATCTTCTCTTGAA+TGG | 0.427032 | 4_2:+66158343 | Msa0616350:five_prime_UTR |
| GTAGAATGTTGATTCAGCTT+TGG | 0.428724 | 4_2:+66160190 | Msa0616350:intron |
| CGGACTAATGAAACATTTGT+GGG | 0.433274 | 4_2:-66160983 | None:intergenic |
| TTCCCTTGCCATTCAATTCA+AGG | 0.433642 | 4_2:+66161067 | Msa0616350:three_prime_UTR |
| TTCACTTCATTTCAAGCACT+TGG | 0.438374 | 4_2:-66161198 | None:intergenic |
| CAAAAGAGCACACCTATGAT+TGG | 0.439184 | 4_2:+66159796 | Msa0616350:CDS |
| CATTTCTTCACAAGTGGAGG+TGG | 0.441690 | 4_2:+66160723 | Msa0616350:CDS |
| TAGAGCATTTGCCAAAGCCT+TGG | 0.446500 | 4_2:+66161149 | Msa0616350:three_prime_UTR |
| TCGGACTAATGAAACATTTG+TGG | 0.455368 | 4_2:-66160984 | None:intergenic |
| ATCAAAAGTGTTGGGCATCA+TGG | 0.462730 | 4_2:+66160257 | Msa0616350:CDS |
| AGATGATGTGTGTGCATTGG+TGG | 0.466893 | 4_2:-66158331 | None:intergenic |
| CTGCAAAAGATTTGGTATAG+TGG | 0.480578 | 4_2:+66159196 | Msa0616350:CDS |
| AAGGACACCATTCCAATCAT+AGG | 0.489134 | 4_2:-66159808 | None:intergenic |
| TCCCTTGAATTGAATGGCAA+GGG | 0.491454 | 4_2:-66161069 | None:intergenic |
| ATCATACCATCAAAAGTGTT+GGG | 0.491747 | 4_2:+66160249 | Msa0616350:CDS |
| TCCCTTGCCATTCAATTCAA+GGG | 0.497676 | 4_2:+66161068 | Msa0616350:three_prime_UTR |
| TTTAGATGGTGTTCAAACCT+TGG | 0.498027 | 4_2:-66158510 | None:intergenic |
| CGATATCAAGTCATGGAACC+TGG | 0.498083 | 4_2:+66160764 | Msa0616350:CDS |
| TTTCAAGCACTTGGATGCCA+TGG | 0.499209 | 4_2:-66161189 | None:intergenic |
| AAGTTAAGAGATTGTTGTTG+TGG | 0.499896 | 4_2:-66158534 | None:intergenic |
| GTCGGAGATTGGGGAAGAAA+AGG | 0.511677 | 4_2:+66158564 | Msa0616350:CDS |
| TTGCTGCTGAGAAGCTTCCA+AGG | 0.511973 | 4_2:+66158493 | Msa0616350:CDS |
| TTCCCTTGAATTGAATGGCA+AGG | 0.515658 | 4_2:-66161070 | None:intergenic |
| GATCCATTTACCTTTAAGAT+GGG | 0.516464 | 4_2:-66160311 | None:intergenic |
| CATCATACCATCAAAAGTGT+TGG | 0.519638 | 4_2:+66160248 | Msa0616350:CDS |
| GAGAAAGCAATTGTTTGATG+AGG | 0.524781 | 4_2:-66161124 | None:intergenic |
| TTCAGCTTTGGTGCAATCCA+AGG | 0.528201 | 4_2:+66160202 | Msa0616350:CDS |
| ACAAATGATTCATAGAATGT+AGG | 0.528252 | 4_2:-66159151 | None:intergenic |
| GGAATTCATTTCTTCACAAG+TGG | 0.529011 | 4_2:+66160717 | Msa0616350:CDS |
| AGCGTAATACTACACTAGAA+TGG | 0.529661 | 4_2:-66158449 | None:intergenic |
| CAACATCACCCCTGTAGTCA+TGG | 0.535679 | 4_2:-66159349 | None:intergenic |
| GGGGTAAATGATTACCTGAT+GGG | 0.540759 | 4_2:-66158610 | None:intergenic |
| CACAAGTGGAGGTGGATCAA+AGG | 0.543166 | 4_2:+66160731 | Msa0616350:CDS |
| ATTCATTTCTTCACAAGTGG+AGG | 0.548786 | 4_2:+66160720 | Msa0616350:CDS |
| ACATGAATCCTTGTCCATCA+TGG | 0.549619 | 4_2:-66160803 | None:intergenic |
| AAGCTTCTCAGCAGCAACAA+TGG | 0.549652 | 4_2:-66158487 | None:intergenic |
| CAAGGCAAAATGGAAGATAG+TGG | 0.570741 | 4_2:+66160220 | Msa0616350:CDS |
| AGCACATAATTGACAACGAA+AGG | 0.573877 | 4_2:+66160605 | Msa0616350:CDS |
| TGATGTGTGTGCATTGGTGG+AGG | 0.576604 | 4_2:-66158328 | None:intergenic |
| TGGTTCTGAAAGACATGGCA+CGG | 0.577625 | 4_2:+66158391 | Msa0616350:exon |
| AATATTGATGCATACATCAA+CGG | 0.582530 | 4_2:+66160565 | Msa0616350:CDS |
| TTTGGGTAACCATGACTACA+GGG | 0.585069 | 4_2:+66159340 | Msa0616350:CDS |
| GCTTCTTGGGACTTGCACCA+TGG | 0.586041 | 4_2:+66161172 | Msa0616350:three_prime_UTR |
| TGGTAATACACAAGAGCTTG+AGG | 0.597820 | 4_2:+66160277 | Msa0616350:CDS |
| CACGATAAGATTCACGAGGA+AGG | 0.605639 | 4_2:-66159827 | None:intergenic |
| CTTTCTGGTTCTGAAAGACA+TGG | 0.607494 | 4_2:+66158386 | Msa0616350:exon |
| GGCAAAATGGAAGATAGTGG+TGG | 0.614472 | 4_2:+66160223 | Msa0616350:CDS |
| GAGCACACCTATGATTGGAA+TGG | 0.624719 | 4_2:+66159801 | Msa0616350:CDS |
| GGCGAGGCGATATCAAGTCA+TGG | 0.627535 | 4_2:+66160757 | Msa0616350:CDS |
| CAATTATGTGCTGCAAACAA+TGG | 0.630087 | 4_2:-66160594 | None:intergenic |
| GTGGAGGTGGATCAAAGGCA+TGG | 0.631356 | 4_2:+66160736 | Msa0616350:CDS |
| AGAAGATGATGTGTGTGCAT+TGG | 0.635325 | 4_2:-66158334 | None:intergenic |
| GGTGGATCAAAGGCATGGCG+AGG | 0.636737 | 4_2:+66160741 | Msa0616350:CDS |
| GCAAAATGGAAGATAGTGGT+GGG | 0.652491 | 4_2:+66160224 | Msa0616350:CDS |
| TGCAAGTCCCAAGAAGCCCA+AGG | 0.673004 | 4_2:-66161166 | None:intergenic |
| TTGGGTAACCATGACTACAG+GGG | 0.715140 | 4_2:+66159341 | Msa0616350:CDS |
| TCTGCACGATAAGATTCACG+AGG | 0.785903 | 4_2:-66159831 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAATAAATATTTTCATT+GGG | - | chr4_2:66159292-66159311 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAATATTTTCAT+TGG | - | chr4_2:66159293-66159312 | None:intergenic | 10.0% |
| !!! | TTAAAAACAAACATTTTTTT+AGG | - | chr4_2:66159500-66159519 | None:intergenic | 10.0% |
| !!! | TAAAAAAATGTTTGTTTTTA+AGG | + | chr4_2:66159499-66159518 | Msa0616350:intron | 10.0% |
| !!! | TTTTATAGAAAAGTATTTTA+CGG | + | chr4_2:66159770-66159789 | Msa0616350:CDS | 10.0% |
| !! | TGTCTATTACATATATAAAA+TGG | + | chr4_2:66158765-66158784 | Msa0616350:intron | 15.0% |
| !! | ATTACATATATAAAATGGTT+AGG | + | chr4_2:66158770-66158789 | Msa0616350:intron | 15.0% |
| !! | TTACATATATAAAATGGTTA+GGG | + | chr4_2:66158771-66158790 | Msa0616350:intron | 15.0% |
| !! | ACAGTTAATTAACAAATTAA+AGG | + | chr4_2:66158844-66158863 | Msa0616350:intron | 15.0% |
| !!! | TGCATTAGATATTTTTTAAA+AGG | - | chr4_2:66159458-66159477 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATATCTAATGC+AGG | + | chr4_2:66159457-66159476 | Msa0616350:intron | 15.0% |
| !!! | GTAAAATACTTTTCTATAAA+AGG | - | chr4_2:66159771-66159790 | None:intergenic | 15.0% |
| !!! | ATTTTCAATATCTAACATTT+TGG | + | chr4_2:66160055-66160074 | Msa0616350:intron | 15.0% |
| !! | AATACACACATAATTAAAAG+AGG | - | chr4_2:66158645-66158664 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTGATTTGTAGA+TGG | + | chr4_2:66159042-66159061 | Msa0616350:intron | 20.0% |
| !!! | TTTTTGTTTGATTTGTAGAT+GGG | + | chr4_2:66159043-66159062 | Msa0616350:intron | 20.0% |
| !!! | TATCTTTTTGTCTTAGAATT+GGG | - | chr4_2:66159388-66159407 | None:intergenic | 20.0% |
| !!! | TGGAATCAAATTTTATTTAG+AGG | - | chr4_2:66159526-66159545 | None:intergenic | 20.0% |
| !! | AAATTTGATTCCAAAAAATC+TGG | + | chr4_2:66159533-66159552 | Msa0616350:intron | 20.0% |
| !!! | TATTTTGTAACCAGATTTTT+TGG | - | chr4_2:66159546-66159565 | None:intergenic | 20.0% |
| !!! | AATTGTAGAATTTTTCTTTG+TGG | + | chr4_2:66159737-66159756 | Msa0616350:CDS | 20.0% |
| !! | ACATTATTTATTCTCTACTA+TGG | - | chr4_2:66159973-66159992 | None:intergenic | 20.0% |
| !!! | ACATAATTTTAATTTTGTGG+AGG | + | chr4_2:66160953-66160972 | Msa0616350:three_prime_UTR | 20.0% |
| !!! | CAAATTTATAGTTCCTTTTT+CGG | - | chr4_2:66161006-66161025 | None:intergenic | 20.0% |
| !! | TATAAATTTGTATGCACAAA+TGG | + | chr4_2:66161016-66161035 | Msa0616350:three_prime_UTR | 20.0% |
| !! | ACAACAATCTCTTAACTTTT+TGG | + | chr4_2:66158539-66158558 | Msa0616350:CDS | 25.0% |
| ! | ATATAAAATGGTTAGGGATT+TGG | + | chr4_2:66158777-66158796 | Msa0616350:intron | 25.0% |
| ! | ACAAATGATTCATAGAATGT+AGG | - | chr4_2:66159154-66159173 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGTTGCCAGTTT+TGG | + | chr4_2:66159322-66159341 | Msa0616350:intron | 25.0% |
| !!! | TTTTTTTTGTTGCCAGTTTT+GGG | + | chr4_2:66159323-66159342 | Msa0616350:intron | 25.0% |
| !! | CTATCTTTTTGTCTTAGAAT+TGG | - | chr4_2:66159389-66159408 | None:intergenic | 25.0% |
| !! | TTGAGATCTTTTATTCTTGA+TGG | + | chr4_2:66159422-66159441 | Msa0616350:CDS | 25.0% |
| ! | AAACACACGTTTATATTTCT+TGG | + | chr4_2:66159575-66159594 | Msa0616350:intron | 25.0% |
| ! | GTTAATTCTATATGTCATTC+TGG | + | chr4_2:66160160-66160179 | Msa0616350:intron | 25.0% |
| ! | GATGTGAAGTAAAAAATATG+AGG | - | chr4_2:66160385-66160404 | None:intergenic | 25.0% |
| ! | AATATTGATGCATACATCAA+CGG | + | chr4_2:66160565-66160584 | Msa0616350:CDS | 25.0% |
| !!! | CGCACATAATTTTAATTTTG+TGG | + | chr4_2:66160950-66160969 | Msa0616350:three_prime_UTR | 25.0% |
| !!! | ATTGTTGTTGTGGTTTTAGA+TGG | - | chr4_2:66158527-66158546 | None:intergenic | 30.0% |
| ! | AAGTTAAGAGATTGTTGTTG+TGG | - | chr4_2:66158537-66158556 | None:intergenic | 30.0% |
| AGGAAACTACAATCAATCTT+TGG | + | chr4_2:66158584-66158603 | Msa0616350:CDS | 30.0% | |
| ATTAAAAGAGGATGGAGTTT+GGG | - | chr4_2:66158633-66158652 | None:intergenic | 30.0% | |
| AATTAAAAGAGGATGGAGTT+TGG | - | chr4_2:66158634-66158653 | None:intergenic | 30.0% | |
| CACACATAATTAAAAGAGGA+TGG | - | chr4_2:66158641-66158660 | None:intergenic | 30.0% | |
| !! | AAATGAGTTACTGACTTTAG+AGG | - | chr4_2:66158805-66158824 | None:intergenic | 30.0% |
| AGTGTAAAGTGAGAAAATGA+AGG | - | chr4_2:66158921-66158940 | None:intergenic | 30.0% | |
| ! | ATAGATTTTGTGATCTCAAC+TGG | + | chr4_2:66159088-66159107 | Msa0616350:CDS | 30.0% |
| ! | GGTGACAATTTTTACAAAGA+TGG | + | chr4_2:66159109-66159128 | Msa0616350:CDS | 30.0% |
| ! | TTTTACAAAGATGGTCTAGA+AGG | + | chr4_2:66159118-66159137 | Msa0616350:CDS | 30.0% |
| TAAGACAAAAAGATAGCAGA+TGG | + | chr4_2:66159393-66159412 | Msa0616350:CDS | 30.0% | |
| AAGACAAAAAGATAGCAGAT+GGG | + | chr4_2:66159394-66159413 | Msa0616350:CDS | 30.0% | |
| ! | AGATCTTTTATTCTTGATGG+AGG | + | chr4_2:66159425-66159444 | Msa0616350:CDS | 30.0% |
| AATATGCAAATTCAGACTTC+TGG | + | chr4_2:66160029-66160048 | Msa0616350:intron | 30.0% | |
| !! | ATCATACCATCAAAAGTGTT+GGG | + | chr4_2:66160249-66160268 | Msa0616350:CDS | 30.0% |
| !! | GATCCATTTACCTTTAAGAT+GGG | - | chr4_2:66160314-66160333 | None:intergenic | 30.0% |
| ! | TGATCCATTTACCTTTAAGA+TGG | - | chr4_2:66160315-66160334 | None:intergenic | 30.0% |
| ! | TCAATATGAGAATGATAACG+TGG | - | chr4_2:66160339-66160358 | None:intergenic | 30.0% |
| TACATGGTAGTTAACATCAA+AGG | + | chr4_2:66160441-66160460 | Msa0616350:intron | 30.0% | |
| ! | TAAGAGTTACATGTTTGCTA+TGG | - | chr4_2:66160474-66160493 | None:intergenic | 30.0% |
| ATGCATCAATATTGTTTGAC+TGG | - | chr4_2:66160558-66160577 | None:intergenic | 30.0% | |
| ! | GTTGTATTCTATGACGTTTT+TGG | + | chr4_2:66160855-66160874 | Msa0616350:CDS | 30.0% |
| ATGTTTCATTAGTCCGAAAA+AGG | + | chr4_2:66160990-66161009 | Msa0616350:three_prime_UTR | 30.0% | |
| TTCAAGGGAAAGTGATTTAT+TGG | + | chr4_2:66161083-66161102 | Msa0616350:three_prime_UTR | 30.0% | |
| ACACATCATCTTCTCTTGAA+TGG | + | chr4_2:66158343-66158362 | Msa0616350:five_prime_UTR | 35.0% | |
| GAAATTGTGTGAGAACTTTC+TGG | + | chr4_2:66158371-66158390 | Msa0616350:five_prime_UTR | 35.0% | |
| ACACTAGAATGGAAGATAAC+AGG | - | chr4_2:66158441-66158460 | None:intergenic | 35.0% | |
| AGCGTAATACTACACTAGAA+TGG | - | chr4_2:66158452-66158471 | None:intergenic | 35.0% | |
| TTTAGATGGTGTTCAAACCT+TGG | - | chr4_2:66158513-66158532 | None:intergenic | 35.0% | |
| !! | TCTCTTAACTTTTTGGTCGT+CGG | + | chr4_2:66158546-66158565 | Msa0616350:CDS | 35.0% |
| TTAAAAGAGGATGGAGTTTG+GGG | - | chr4_2:66158632-66158651 | None:intergenic | 35.0% | |
| GATTTGTAGATGGGAATTGT+AGG | + | chr4_2:66159052-66159071 | Msa0616350:intron | 35.0% | |
| ! | CACTATACCAAATCTTTTGC+AGG | - | chr4_2:66159198-66159217 | None:intergenic | 35.0% |
| ! | CTGCAAAAGATTTGGTATAG+TGG | + | chr4_2:66159196-66159215 | Msa0616350:CDS | 35.0% |
| ACAATTCCTGCACAAAAAAG+TGG | - | chr4_2:66159723-66159742 | None:intergenic | 35.0% | |
| AAAAGTTATCGAGTGTGTCA+CGG | + | chr4_2:66159942-66159961 | Msa0616350:intron | 35.0% | |
| !! | GTAGAATGTTGATTCAGCTT+TGG | + | chr4_2:66160190-66160209 | Msa0616350:intron | 35.0% |
| ! | CATCATACCATCAAAAGTGT+TGG | + | chr4_2:66160248-66160267 | Msa0616350:CDS | 35.0% |
| CTTCCCATCTTAAAGGTAAA+TGG | + | chr4_2:66160308-66160327 | Msa0616350:intron | 35.0% | |
| !! | GTTACATGTTTGCTATGGTT+CGG | - | chr4_2:66160469-66160488 | None:intergenic | 35.0% |
| TGGAAAGATAGTGTAGAAAG+TGG | - | chr4_2:66160538-66160557 | None:intergenic | 35.0% | |
| CAATTATGTGCTGCAAACAA+TGG | - | chr4_2:66160597-66160616 | None:intergenic | 35.0% | |
| AGCACATAATTGACAACGAA+AGG | + | chr4_2:66160605-66160624 | Msa0616350:CDS | 35.0% | |
| CTACGATGTTTAAGCAAACA+AGG | - | chr4_2:66160696-66160715 | None:intergenic | 35.0% | |
| TGTTTGCTTAAACATCGTAG+TGG | + | chr4_2:66160696-66160715 | Msa0616350:intron | 35.0% | |
| GGAATTCATTTCTTCACAAG+TGG | + | chr4_2:66160717-66160736 | Msa0616350:CDS | 35.0% | |
| ATTCATTTCTTCACAAGTGG+AGG | + | chr4_2:66160720-66160739 | Msa0616350:CDS | 35.0% | |
| ! | GAAGTGAAGTTTTACCATGA+TGG | + | chr4_2:66160789-66160808 | Msa0616350:CDS | 35.0% |
| !!! | AAGTTTTACCATGATGGACA+AGG | + | chr4_2:66160795-66160814 | Msa0616350:CDS | 35.0% |
| !!! | ATTCTATGACGTTTTTGGCA+AGG | + | chr4_2:66160860-66160879 | Msa0616350:CDS | 35.0% |
| !!! | TGTCGCTGCTTTAAGTTTTT+TGG | - | chr4_2:66160907-66160926 | None:intergenic | 35.0% |
| CGGACTAATGAAACATTTGT+GGG | - | chr4_2:66160986-66161005 | None:intergenic | 35.0% | |
| TCGGACTAATGAAACATTTG+TGG | - | chr4_2:66160987-66161006 | None:intergenic | 35.0% | |
| TCACTTTCCCTTGAATTGAA+TGG | - | chr4_2:66161078-66161097 | None:intergenic | 35.0% | |
| GAGAAAGCAATTGTTTGATG+AGG | - | chr4_2:66161127-66161146 | None:intergenic | 35.0% | |
| TTCACTTCATTTCAAGCACT+TGG | - | chr4_2:66161201-66161220 | None:intergenic | 35.0% | |
| AGAAGATGATGTGTGTGCAT+TGG | - | chr4_2:66158337-66158356 | None:intergenic | 40.0% | |
| !! | CTTTCTGGTTCTGAAAGACA+TGG | + | chr4_2:66158386-66158405 | Msa0616350:exon | 40.0% |
| GGGGTAAATGATTACCTGAT+GGG | - | chr4_2:66158613-66158632 | None:intergenic | 40.0% | |
| TGGGGTAAATGATTACCTGA+TGG | - | chr4_2:66158614-66158633 | None:intergenic | 40.0% | |
| TCACTTTACACTAGTACTCG+TGG | + | chr4_2:66158929-66158948 | Msa0616350:intron | 40.0% | |
| TGGAGTATAACTATCACACG+AGG | + | chr4_2:66158949-66158968 | Msa0616350:intron | 40.0% | |
| ! | TACCAAATCTTTTGCAGGCT+CGG | - | chr4_2:66159193-66159212 | None:intergenic | 40.0% |
| TAGTCATGGTTACCCAAAAC+TGG | - | chr4_2:66159338-66159357 | None:intergenic | 40.0% | |
| !! | TTTTGGGTAACCATGACTAC+AGG | + | chr4_2:66159339-66159358 | Msa0616350:CDS | 40.0% |
| TTTGGGTAACCATGACTACA+GGG | + | chr4_2:66159340-66159359 | Msa0616350:CDS | 40.0% | |
| !!! | TGCTTTCCACTTTTTTGTGC+AGG | + | chr4_2:66159714-66159733 | Msa0616350:intron | 40.0% |
| ! | CAATCATAGGTGTGCTCTTT+TGG | - | chr4_2:66159798-66159817 | None:intergenic | 40.0% |
| ! | CAAAAGAGCACACCTATGAT+TGG | + | chr4_2:66159796-66159815 | Msa0616350:CDS | 40.0% |
| AAGGACACCATTCCAATCAT+AGG | - | chr4_2:66159811-66159830 | None:intergenic | 40.0% | |
| TTATCGTGCAGAACTCTTGA+AGG | + | chr4_2:66159842-66159861 | Msa0616350:CDS | 40.0% | |
| ! | CACTATCTTCCATTTTGCCT+TGG | - | chr4_2:66160222-66160241 | None:intergenic | 40.0% |
| CAAGGCAAAATGGAAGATAG+TGG | + | chr4_2:66160220-66160239 | Msa0616350:CDS | 40.0% | |
| ! | GCAAAATGGAAGATAGTGGT+GGG | + | chr4_2:66160224-66160243 | Msa0616350:CDS | 40.0% |
| ! | ATGATGCCCAACACTTTTGA+TGG | - | chr4_2:66160258-66160277 | None:intergenic | 40.0% |
| !! | ATCAAAAGTGTTGGGCATCA+TGG | + | chr4_2:66160257-66160276 | Msa0616350:CDS | 40.0% |
| TGGTAATACACAAGAGCTTG+AGG | + | chr4_2:66160277-66160296 | Msa0616350:CDS | 40.0% | |
| TCACATCGAAAATGATTCCG+AGG | + | chr4_2:66160398-66160417 | Msa0616350:intron | 40.0% | |
| AAAATGATTCCGAGGACACA+TGG | + | chr4_2:66160406-66160425 | Msa0616350:intron | 40.0% | |
| !! | AAGCTTCACTTTTAGAGGTG+TGG | - | chr4_2:66160673-66160692 | None:intergenic | 40.0% |
| !! | CAAGGAAGCTTCACTTTTAG+AGG | - | chr4_2:66160678-66160697 | None:intergenic | 40.0% |
| GGTAAAACTTCACTTCTTCC+AGG | - | chr4_2:66160785-66160804 | None:intergenic | 40.0% | |
| ACATGAATCCTTGTCCATCA+TGG | - | chr4_2:66160806-66160825 | None:intergenic | 40.0% | |
| ! | TTGGCAAGGTTTTGCATAGA+TGG | + | chr4_2:66160874-66160893 | Msa0616350:CDS | 40.0% |
| TTCCCTTGCCATTCAATTCA+AGG | + | chr4_2:66161067-66161086 | Msa0616350:three_prime_UTR | 40.0% | |
| TCCCTTGCCATTCAATTCAA+GGG | + | chr4_2:66161068-66161087 | Msa0616350:three_prime_UTR | 40.0% | |
| TCCCTTGAATTGAATGGCAA+GGG | - | chr4_2:66161072-66161091 | None:intergenic | 40.0% | |
| TTCCCTTGAATTGAATGGCA+AGG | - | chr4_2:66161073-66161092 | None:intergenic | 40.0% | |
| AGATGATGTGTGTGCATTGG+TGG | - | chr4_2:66158334-66158353 | None:intergenic | 45.0% | |
| !! | TGGTTCTGAAAGACATGGCA+CGG | + | chr4_2:66158391-66158410 | Msa0616350:exon | 45.0% |
| AAGCTTCTCAGCAGCAACAA+TGG | - | chr4_2:66158490-66158509 | None:intergenic | 45.0% | |
| !! | ACTTTTTGGTCGTCGGAGAT+TGG | + | chr4_2:66158553-66158572 | Msa0616350:CDS | 45.0% |
| !! | CTTTTTGGTCGTCGGAGATT+GGG | + | chr4_2:66158554-66158573 | Msa0616350:CDS | 45.0% |
| !! | TTTTTGGTCGTCGGAGATTG+GGG | + | chr4_2:66158555-66158574 | Msa0616350:CDS | 45.0% |
| ! | ACCAAATCTTTTGCAGGCTC+GGG | - | chr4_2:66159192-66159211 | None:intergenic | 45.0% |
| TTGGGTAACCATGACTACAG+GGG | + | chr4_2:66159341-66159360 | Msa0616350:CDS | 45.0% | |
| GAGCACACCTATGATTGGAA+TGG | + | chr4_2:66159801-66159820 | Msa0616350:CDS | 45.0% | |
| CACGATAAGATTCACGAGGA+AGG | - | chr4_2:66159830-66159849 | None:intergenic | 45.0% | |
| TCTGCACGATAAGATTCACG+AGG | - | chr4_2:66159834-66159853 | None:intergenic | 45.0% | |
| GTGCAGAACTCTTGAAGGTA+AGG | + | chr4_2:66159847-66159866 | Msa0616350:intron | 45.0% | |
| ! | TTCAGCTTTGGTGCAATCCA+AGG | + | chr4_2:66160202-66160221 | Msa0616350:CDS | 45.0% |
| TGGTGCAATCCAAGGCAAAA+TGG | + | chr4_2:66160210-66160229 | Msa0616350:CDS | 45.0% | |
| ! | GGCAAAATGGAAGATAGTGG+TGG | + | chr4_2:66160223-66160242 | Msa0616350:CDS | 45.0% |
| GCAGCTTCTTCCCATCTTAA+AGG | + | chr4_2:66160301-66160320 | Msa0616350:CDS | 45.0% | |
| ATGGCTTAGTGTCGCATACA+TGG | + | chr4_2:66160425-66160444 | Msa0616350:intron | 45.0% | |
| CATTTCTTCACAAGTGGAGG+TGG | + | chr4_2:66160723-66160742 | Msa0616350:CDS | 45.0% | |
| CGATATCAAGTCATGGAACC+TGG | + | chr4_2:66160764-66160783 | Msa0616350:CDS | 45.0% | |
| ! | TAGAGCATTTGCCAAAGCCT+TGG | + | chr4_2:66161149-66161168 | Msa0616350:three_prime_UTR | 45.0% |
| ! | AGAGCATTTGCCAAAGCCTT+GGG | + | chr4_2:66161150-66161169 | Msa0616350:three_prime_UTR | 45.0% |
| TTTCAAGCACTTGGATGCCA+TGG | - | chr4_2:66161192-66161211 | None:intergenic | 45.0% | |
| ! | TGATGTGTGTGCATTGGTGG+AGG | - | chr4_2:66158331-66158350 | None:intergenic | 50.0% |
| TTGCTGCTGAGAAGCTTCCA+AGG | + | chr4_2:66158493-66158512 | Msa0616350:CDS | 50.0% | |
| GTCGGAGATTGGGGAAGAAA+AGG | + | chr4_2:66158564-66158583 | Msa0616350:CDS | 50.0% | |
| TCAATCTTTGGTCGCCCATC+AGG | + | chr4_2:66158596-66158615 | Msa0616350:CDS | 50.0% | |
| ! | CCAAATCTTTTGCAGGCTCG+GGG | - | chr4_2:66159191-66159210 | None:intergenic | 50.0% |
| CAACATCACCCCTGTAGTCA+TGG | - | chr4_2:66159352-66159371 | None:intergenic | 50.0% | |
| GACACTAAGCCATGTGTCCT+CGG | - | chr4_2:66160418-66160437 | None:intergenic | 50.0% | |
| CACAAGTGGAGGTGGATCAA+AGG | + | chr4_2:66160731-66160750 | Msa0616350:CDS | 50.0% | |
| CCCCGAGCCTGCAAAAGATT+TGG | + | chr4_2:66159188-66159207 | Msa0616350:CDS | 55.0% | |
| GTGGAGGTGGATCAAAGGCA+TGG | + | chr4_2:66160736-66160755 | Msa0616350:CDS | 55.0% | |
| GGCGAGGCGATATCAAGTCA+TGG | + | chr4_2:66160757-66160776 | Msa0616350:CDS | 55.0% | |
| TGCCAAAGCCTTGGGCTTCT+TGG | + | chr4_2:66161158-66161177 | Msa0616350:three_prime_UTR | 55.0% | |
| GCCAAAGCCTTGGGCTTCTT+GGG | + | chr4_2:66161159-66161178 | Msa0616350:three_prime_UTR | 55.0% | |
| TCCCAAGAAGCCCAAGGCTT+TGG | - | chr4_2:66161163-66161182 | None:intergenic | 55.0% | |
| TGCAAGTCCCAAGAAGCCCA+AGG | - | chr4_2:66161169-66161188 | None:intergenic | 55.0% | |
| GCTTCTTGGGACTTGCACCA+TGG | + | chr4_2:66161172-66161191 | Msa0616350:three_prime_UTR | 55.0% | |
| ! | GGTGGATCAAAGGCATGGCG+AGG | + | chr4_2:66160741-66160760 | Msa0616350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66158318 | 66161243 | 66158318 | ID=Msa0616350;Name=Msa0616350 |
| chr4_2 | mRNA | 66158318 | 66161243 | 66158318 | ID=Msa0616350-mRNA-1;Parent=Msa0616350;Name=Msa0616350-mRNA-1;_AED=0.30;_eAED=0.30;_QI=87|1|1|1|1|1|7|305|341 |
| chr4_2 | exon | 66158318 | 66158617 | 66158318 | ID=Msa0616350-mRNA-1:exon:18793;Parent=Msa0616350-mRNA-1 |
| chr4_2 | exon | 66159061 | 66159217 | 66159061 | ID=Msa0616350-mRNA-1:exon:18794;Parent=Msa0616350-mRNA-1 |
| chr4_2 | exon | 66159339 | 66159446 | 66159339 | ID=Msa0616350-mRNA-1:exon:18795;Parent=Msa0616350-mRNA-1 |
| chr4_2 | exon | 66159736 | 66159863 | 66159736 | ID=Msa0616350-mRNA-1:exon:18796;Parent=Msa0616350-mRNA-1 |
| chr4_2 | exon | 66160194 | 66160322 | 66160194 | ID=Msa0616350-mRNA-1:exon:18797;Parent=Msa0616350-mRNA-1 |
| chr4_2 | exon | 66160559 | 66160626 | 66160559 | ID=Msa0616350-mRNA-1:exon:18798;Parent=Msa0616350-mRNA-1 |
| chr4_2 | exon | 66160716 | 66161243 | 66160716 | ID=Msa0616350-mRNA-1:exon:18799;Parent=Msa0616350-mRNA-1 |
| chr4_2 | five_prime_UTR | 66158318 | 66158404 | 66158318 | ID=Msa0616350-mRNA-1:five_prime_utr;Parent=Msa0616350-mRNA-1 |
| chr4_2 | CDS | 66158405 | 66158617 | 66158405 | ID=Msa0616350-mRNA-1:cds;Parent=Msa0616350-mRNA-1 |
| chr4_2 | CDS | 66159061 | 66159217 | 66159061 | ID=Msa0616350-mRNA-1:cds;Parent=Msa0616350-mRNA-1 |
| chr4_2 | CDS | 66159339 | 66159446 | 66159339 | ID=Msa0616350-mRNA-1:cds;Parent=Msa0616350-mRNA-1 |
| chr4_2 | CDS | 66159736 | 66159863 | 66159736 | ID=Msa0616350-mRNA-1:cds;Parent=Msa0616350-mRNA-1 |
| chr4_2 | CDS | 66160194 | 66160322 | 66160194 | ID=Msa0616350-mRNA-1:cds;Parent=Msa0616350-mRNA-1 |
| chr4_2 | CDS | 66160559 | 66160626 | 66160559 | ID=Msa0616350-mRNA-1:cds;Parent=Msa0616350-mRNA-1 |
| chr4_2 | CDS | 66160716 | 66160938 | 66160716 | ID=Msa0616350-mRNA-1:cds;Parent=Msa0616350-mRNA-1 |
| chr4_2 | three_prime_UTR | 66160939 | 66161243 | 66160939 | ID=Msa0616350-mRNA-1:three_prime_utr;Parent=Msa0616350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
