AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1325980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325980 MtrunA17_Chr8g0360611 86.523 371 13 3 1 363 1 342 0.0 644
Msa1325980 MtrunA17_Chr7g0276581 33.529 170 78 4 75 238 91 231 2.61e-17 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325980 AT1G53250.1 43.713 167 60 2 82 243 101 238 6.76e-34 129
Msa1325980 AT1G53800.1 34.351 131 57 2 81 211 103 204 6.54e-14 73.2
Msa1325980 AT1G53800.2 34.351 131 57 2 81 211 107 208 6.94e-14 73.2
Msa1325980 AT1G53800.3 34.351 131 57 2 81 211 107 208 6.94e-14 73.2

Find 81 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACCACTCCCTCCTTTCT+TGG 0.150737 8_4:+39215375 None:intergenic
TGTGGCCTCAATTGCGGTTT+TGG 0.198465 8_4:-39218791 Msa1325980:CDS
CCCTCCTTTCTTTGCTGATT+TGG 0.211087 8_4:+39215207 None:intergenic
AGGAAAAGTACCTTGGAATA+AGG 0.265892 8_4:-39219099 Msa1325980:CDS
CTCTTACTTGACTTCACCTT+GGG 0.334743 8_4:+39218933 None:intergenic
TTCCCAACAATTATTATTCA+AGG 0.353791 8_4:-39219322 Msa1325980:CDS
TTTCCTCTGCCTGCAGAATT+CGG 0.363745 8_4:+39215299 None:intergenic
AATGTTGATTTAGGGATTGT+TGG 0.376629 8_4:+39219251 None:intergenic
CTGAACATCCCCGTTGTCAT+AGG 0.379002 8_4:-39218536 Msa1325980:intron
GTTATTCTCTGAGACGTGTC+TGG 0.381332 8_4:-39215471 Msa1325980:CDS
TTGTGTTTACCTATGACAAC+GGG 0.385549 8_4:+39218527 None:intergenic
CAAATAAATTATTTCATTTG+TGG 0.389580 8_4:-39215243 Msa1325980:CDS
GAAAAGCTGATGACAATTGT+TGG 0.401409 8_4:-39215268 Msa1325980:CDS
GTGGAGAAGAAGAACTTGAT+TGG 0.402138 8_4:-39215183 Msa1325980:CDS
GGAAAAGTACCTTGGAATAA+GGG 0.402627 8_4:-39219098 Msa1325980:CDS
TTGTTCAACATTGTGGTGTT+CGG 0.419568 8_4:+39219211 None:intergenic
AATTAGGATGAGAACATTAG+AGG 0.421479 8_4:-39218967 Msa1325980:CDS
TGGAGAAGAAGAACTTGATT+GGG 0.436550 8_4:-39215182 Msa1325980:CDS
TGCCTTGAATAATAATTGTT+GGG 0.454127 8_4:+39219320 None:intergenic
TGATTTAGGGATTGTTGGAG+GGG 0.458850 8_4:+39219256 None:intergenic
GAGAACATTAGAGGCTTTGA+AGG 0.459307 8_4:-39218958 Msa1325980:CDS
AATTCTGCAGGCAGAGGAAA+AGG 0.466502 8_4:-39215296 Msa1325980:CDS
CGACTGAAGTCACAGCGGGC+AGG 0.473175 8_4:-39215442 Msa1325980:CDS
GTTGGTTGGAAAGAGCAGTT+AGG 0.475690 8_4:+39219924 None:intergenic
TGTTTCCTTCCCTTATTCCA+AGG 0.489715 8_4:+39219089 None:intergenic
TTGATTTAGGGATTGTTGGA+GGG 0.493657 8_4:+39219255 None:intergenic
AGAATGAGGAGAATGAGAAT+AGG 0.494493 8_4:-39219134 Msa1325980:CDS
TGTTCCCAAAACCGCAATTG+AGG 0.499931 8_4:+39218786 None:intergenic
CAAAATAAAAGCGGAGAAAG+AGG 0.500535 8_4:-39215074 Msa1325980:CDS
TTGCCTTGAATAATAATTGT+TGG 0.504529 8_4:+39219319 None:intergenic
GAAGGCAAAGGCCAAAGAGA+TGG 0.510646 8_4:-39215098 Msa1325980:CDS
AGACCACATATAGATAGAAC+CGG 0.512688 8_4:-39219994 Msa1325980:five_prime_UTR
GACTGAAGTCACAGCGGGCA+GGG 0.513912 8_4:-39215441 Msa1325980:CDS
GAGCAGTTAGGAAGGTGAAA+AGG 0.514326 8_4:+39219936 None:intergenic
GAAAAGGAACATGAATGAGT+TGG 0.515172 8_4:+39219952 None:intergenic
TGAGTTCCACCGAATTCTGC+AGG 0.515380 8_4:-39215308 Msa1325980:CDS
GTTGATTTAGGGATTGTTGG+AGG 0.515416 8_4:+39219254 None:intergenic
GTTACTCAAGAATTCAAACT+TGG 0.519014 8_4:-39214920 Msa1325980:CDS
ACTGAAGTCACAGCGGGCAG+GGG 0.520282 8_4:-39215440 Msa1325980:CDS
TAAATTATTTCATTTGTGGA+CGG 0.522542 8_4:-39215239 Msa1325980:CDS
TTCTCATCCTAATTCGCTCA+CGG 0.524851 8_4:+39218976 None:intergenic
AAGAATCTTGTTCAACATTG+TGG 0.527596 8_4:+39219204 None:intergenic
GTTGGAAAGAGCAGTTAGGA+AGG 0.529033 8_4:+39219928 None:intergenic
AACTCAGACACCAGCGACTC+CGG 0.530721 8_4:+39219975 None:intergenic
TCAGCAAAGAAAGGAGGGAG+TGG 0.535966 8_4:-39215202 Msa1325980:CDS
ATAGCAAATGCAGCCAAGAA+AGG 0.538382 8_4:-39215388 Msa1325980:CDS
CAAACAAAGGAAAAGTACCT+TGG 0.546625 8_4:-39219106 Msa1325980:CDS
ACTCTTACTTGACTTCACCT+TGG 0.548598 8_4:+39218932 None:intergenic
GCAAATGCAGCCAAGAAAGG+AGG 0.553430 8_4:-39215385 Msa1325980:CDS
CCTCTGCCTGCAGAATTCGG+TGG 0.556848 8_4:+39215302 None:intergenic
ATAGCCAAATCAGCAAAGAA+AGG 0.558567 8_4:-39215211 Msa1325980:CDS
CCAAATCAGCAAAGAAAGGA+GGG 0.563567 8_4:-39215207 Msa1325980:CDS
CAAATGCAGCCAAGAAAGGA+GGG 0.563593 8_4:-39215384 Msa1325980:CDS
CTTGTGTTTACCTATGACAA+CGG 0.564622 8_4:+39218526 None:intergenic
AGAGCGACTGAAGTCACAGC+GGG 0.564801 8_4:-39215446 Msa1325980:CDS
GTTAAATGTGGCCTCAATTG+CGG 0.565001 8_4:-39218797 Msa1325980:CDS
GCCAAATCAGCAAAGAAAGG+AGG 0.565416 8_4:-39215208 Msa1325980:CDS
TTCCTGCAGTGATCAGATCA+AGG 0.567895 8_4:-39215503 Msa1325980:intron
TTGTTGGGAATATGATTCAA+AGG 0.569799 8_4:+39219335 None:intergenic
TTATTCTCTGAGACGTGTCT+GGG 0.580357 8_4:-39215470 Msa1325980:CDS
TCTCATCCTAATTCGCTCAC+GGG 0.585592 8_4:+39218977 None:intergenic
CTCTTGATAAAGAGAGAATG+AGG 0.588623 8_4:-39219148 Msa1325980:CDS
AAGTACCTTGGAATAAGGGA+AGG 0.596523 8_4:-39219094 Msa1325980:CDS
GCAGCCAAGAAAGGAGGGAG+TGG 0.599753 8_4:-39215379 Msa1325980:CDS
TTGAAGTAGAGCATGTTGGT+TGG 0.602629 8_4:+39219910 None:intergenic
GAATTCTTGAGTAACATCCT+CGG 0.607837 8_4:+39214928 None:intergenic
ACTCCGGTTCTATCTATATG+TGG 0.610701 8_4:+39219991 None:intergenic
CGGAGAATCGCAGTTAAATG+TGG 0.611385 8_4:-39218809 Msa1325980:CDS
ATATGATTCAAAGGAGTGTG+TGG 0.612561 8_4:+39219344 None:intergenic
GAAAATGTTGTCAGTGTGAG+AGG 0.617334 8_4:-39219377 Msa1325980:intron
AGAGGCTTTGAAGGACCCCA+AGG 0.638810 8_4:-39218949 Msa1325980:CDS
TCTTACTTGACTTCACCTTG+GGG 0.641871 8_4:+39218934 None:intergenic
AAGGGAAGGAAACACACTGC+AGG 0.642716 8_4:-39219080 Msa1325980:intron
AGAATAGGACTAGCAAACAA+AGG 0.645416 8_4:-39219119 Msa1325980:CDS
TGAGTTGAAGTAGAGCATGT+TGG 0.645834 8_4:+39219906 None:intergenic
AGAGAAAAGATCTCCGAGAG+AGG 0.649225 8_4:-39215012 Msa1325980:CDS
GCGTATTACAGAGAAGGCAA+AGG 0.664179 8_4:-39215110 Msa1325980:intron
AGAGATGGCCAAAATAAAAG+CGG 0.667301 8_4:-39215083 Msa1325980:CDS
AGAGGAAGACAAATGTGCCG+AGG 0.686719 8_4:-39214945 Msa1325980:CDS
AAGAGCGACTGAAGTCACAG+CGG 0.775304 8_4:-39215447 Msa1325980:CDS
TGTGTTTACCTATGACAACG+GGG 0.785259 8_4:+39218528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTCTTTTACT+TGG - chr8_4:39216258-39216277 Msa1325980:intron 10.0%
!! TGTGAAATATTAATAAATTA+TGG + chr8_4:39216563-39216582 None:intergenic 10.0%
!!! TTTTTTATTAAGTTATAGTA+CGG - chr8_4:39218223-39218242 Msa1325980:intron 10.0%
!!! AATAAGTTAATTTTTTAAGA+CGG - chr8_4:39218279-39218298 Msa1325980:intron 10.0%
!!! AATTATGTCATTTTCTTTAA+GGG - chr8_4:39215162-39215181 Msa1325980:CDS 15.0%
!! ACAAATTATGAAAATTATCA+AGG - chr8_4:39216492-39216511 Msa1325980:intron 15.0%
!!! TTAACAAAGGATATTTTTTT+TGG + chr8_4:39216623-39216642 None:intergenic 15.0%
!!! AAGATATTAGGTTTTTATAT+TGG - chr8_4:39216665-39216684 Msa1325980:intron 15.0%
!!! AGATATTAGGTTTTTATATT+GGG - chr8_4:39216666-39216685 Msa1325980:intron 15.0%
!!! ATCATATTAGGTTTTTATAT+TGG - chr8_4:39216791-39216810 Msa1325980:intron 15.0%
!!! ATCATATTAGGTTTTTATAT+TGG - chr8_4:39216791-39216810 Msa1325980:intron 15.0%
!!! TAATAGTTAGGTTTTTATAT+TGG - chr8_4:39217295-39217314 Msa1325980:intron 15.0%
!!! TAAAAGTAACAATGTTTTTT+AGG - chr8_4:39217718-39217737 Msa1325980:intron 15.0%
!!! AATAATGTAATTGCTTTTAA+AGG - chr8_4:39218033-39218052 Msa1325980:intron 15.0%
!!! TTTCTTTTTATTGTGTTTAA+GGG + chr8_4:39218068-39218087 None:intergenic 15.0%
!! AAAGAAACTAAATAATTGTT+TGG - chr8_4:39218081-39218100 Msa1325980:intron 15.0%
!! TTGATAAAAAAATGTATTAC+AGG + chr8_4:39218159-39218178 None:intergenic 15.0%
!! TCTTAATTATATTATTGAAG+TGG + chr8_4:39218876-39218895 None:intergenic 15.0%
!! TAGAATATATTACTATTAGA+AGG + chr8_4:39219196-39219215 None:intergenic 15.0%
!! CAAATAAATTATTTCATTTG+TGG - chr8_4:39219662-39219681 Msa1325980:intron 15.0%
!!! GAATTATGTCATTTTCTTTA+AGG - chr8_4:39215161-39215180 Msa1325980:CDS 20.0%
!! AACAACAATAAAGTTTAAAG+AGG + chr8_4:39215442-39215461 None:intergenic 20.0%
!!! AAAAAGACAATGTTGATTTA+GGG + chr8_4:39215665-39215684 None:intergenic 20.0%
!!! AAAATCAAGGTTTTAAATAG+TGG + chr8_4:39216169-39216188 None:intergenic 20.0%
!!! CTATTTAAAACCTTGATTTT+AGG - chr8_4:39216169-39216188 Msa1325980:intron 20.0%
!!! TGAAAATTTTTTAGTTGAAG+GGG + chr8_4:39216332-39216351 None:intergenic 20.0%
!!! CTGAAAATTTTTTAGTTGAA+GGG + chr8_4:39216333-39216352 None:intergenic 20.0%
!! ATTGAGAAGGAAAAATTATT+TGG - chr8_4:39216519-39216538 Msa1325980:intron 20.0%
!!! TTTTTTGGTTACATTAACAA+AGG + chr8_4:39216608-39216627 None:intergenic 20.0%
!! GATAGATATGTTATTAACAA+AGG + chr8_4:39216636-39216655 None:intergenic 20.0%
!! ATCTCTCTTTATAAGATATT+AGG - chr8_4:39216653-39216672 Msa1325980:intron 20.0%
!!! AGCATATTAGGTTTTTATAT+TGG - chr8_4:39217467-39217486 Msa1325980:intron 20.0%
!!! TAGTTTTATTGTATGTTACT+TGG - chr8_4:39217665-39217684 Msa1325980:intron 20.0%
!! TTAGTAGTATATGTTACAAT+CGG + chr8_4:39217701-39217720 None:intergenic 20.0%
!! TGTTACCCTTATTAATATAA+GGG - chr8_4:39217853-39217872 Msa1325980:intron 20.0%
!!! GTTTCTTTTTATTGTGTTTA+AGG + chr8_4:39218069-39218088 None:intergenic 20.0%
!! AACGTAAATTTATAACTGAA+TGG + chr8_4:39218413-39218432 None:intergenic 20.0%
!!! TGAATATTTTTCAGACATAA+GGG + chr8_4:39218827-39218846 None:intergenic 20.0%
!!! TTGAATATTTTTCAGACATA+AGG + chr8_4:39218828-39218847 None:intergenic 20.0%
!! AAAAAAAAGTGAAATATGCA+TGG + chr8_4:39218916-39218935 None:intergenic 20.0%
!!! TTTCTGCAAAAGTATATTAT+AGG - chr8_4:39218937-39218956 Msa1325980:intron 20.0%
!!! TTCTGCAAAAGTATATTATA+GGG - chr8_4:39218938-39218957 Msa1325980:intron 20.0%
!! ATTTCTCATTTGTTTGTAAT+TGG + chr8_4:39218984-39219003 None:intergenic 20.0%
!! CAAGATCATAACAAATTATT+CGG - chr8_4:39219119-39219138 Msa1325980:CDS 20.0%
!!! ATTGTTAGACAGAAATTTTT+AGG - chr8_4:39219306-39219325 Msa1325980:CDS 20.0%
!! TAAATTATTTCATTTGTGGA+CGG - chr8_4:39219666-39219685 Msa1325980:intron 20.0%
! TTATTTACTTTACTGTTGCA+CGG - chr8_4:39215073-39215092 Msa1325980:CDS 25.0%
! ATTGCAAAATAATCCTTGAA+TGG - chr8_4:39215249-39215268 Msa1325980:CDS 25.0%
! TTCCCAACAATTATTATTCA+AGG - chr8_4:39215583-39215602 Msa1325980:intron 25.0%
! TGCCTTGAATAATAATTGTT+GGG + chr8_4:39215588-39215607 None:intergenic 25.0%
! TTGCCTTGAATAATAATTGT+TGG + chr8_4:39215589-39215608 None:intergenic 25.0%
!!! GAAAAAGACAATGTTGATTT+AGG + chr8_4:39215666-39215685 None:intergenic 25.0%
!!! CGAGTTTATTTTACCATTTT+TGG - chr8_4:39215859-39215878 Msa1325980:intron 25.0%
! ACAACAAAATGATCCAAAAA+TGG + chr8_4:39215875-39215894 None:intergenic 25.0%
! TGATGTGAACACAAAAATAA+AGG + chr8_4:39216020-39216039 None:intergenic 25.0%
! CCTAAATCATTTCAACAATA+AGG + chr8_4:39216055-39216074 None:intergenic 25.0%
! CCTTATTGTTGAAATGATTT+AGG - chr8_4:39216052-39216071 Msa1325980:intron 25.0%
!!! CCTGAAAATTTTTTAGTTGA+AGG + chr8_4:39216334-39216353 None:intergenic 25.0%
!! CCTTCAACTAAAAAATTTTC+AGG - chr8_4:39216331-39216350 Msa1325980:intron 25.0%
!! AACATAAACATGATTTTGCA+GGG + chr8_4:39216460-39216479 None:intergenic 25.0%
!! TAACATAAACATGATTTTGC+AGG + chr8_4:39216461-39216480 None:intergenic 25.0%
! TTATCAAGGATTAATTGAGA+AGG - chr8_4:39216506-39216525 Msa1325980:intron 25.0%
! ACCTTATCTTTAATCTATGT+GGG - chr8_4:39217557-39217576 Msa1325980:intron 25.0%
! ACTTGGTTATTCCAATAATA+TGG - chr8_4:39217580-39217599 Msa1325980:intron 25.0%
!!! TTGCTGTTTTTTTTTCTCTA+AGG - chr8_4:39217768-39217787 Msa1325980:intron 25.0%
!!! TGCTGTTTTTTTTTCTCTAA+GGG - chr8_4:39217769-39217788 Msa1325980:intron 25.0%
! TAATAAGGGTAACAGAAATT+GGG + chr8_4:39217847-39217866 None:intergenic 25.0%
! TTAATAAGGGTAACAGAAAT+TGG + chr8_4:39217848-39217867 None:intergenic 25.0%
! CTGTTACCCTTATTAATATA+AGG - chr8_4:39217852-39217871 Msa1325980:intron 25.0%
! AGTAGATTTGATGTAATGTT+TGG - chr8_4:39217976-39217995 Msa1325980:intron 25.0%
!! TTTGTATTTTCTTGATGCAA+TGG - chr8_4:39218433-39218452 Msa1325980:intron 25.0%
! GTGTAAAAAAAAACAAGGTA+AGG + chr8_4:39218726-39218745 None:intergenic 25.0%
! CTCTTGTGTAAAAAAAAACA+AGG + chr8_4:39218731-39218750 None:intergenic 25.0%
!!! CTTGTTTTTTTTTACACAAG+AGG - chr8_4:39218729-39218748 Msa1325980:intron 25.0%
!! ATTTCACTGTGTTTTCAATA+AGG - chr8_4:39219032-39219051 Msa1325980:intron 25.0%
!!! GATTGAAATTAGTTTCTAGT+TGG + chr8_4:39219160-39219179 None:intergenic 25.0%
! ACAGATAAAAGCGATAAAAA+AGG - chr8_4:39219855-39219874 Msa1325980:intron 25.0%
ACACAATAAATACAGTGTGA+GGG + chr8_4:39215044-39215063 None:intergenic 30.0%
AACACAATAAATACAGTGTG+AGG + chr8_4:39215045-39215064 None:intergenic 30.0%
TTGCAATTTATCTGCATTCA+AGG + chr8_4:39215236-39215255 None:intergenic 30.0%
TTGTTGGGAATATGATTCAA+AGG + chr8_4:39215573-39215592 None:intergenic 30.0%
!! AATGTTGATTTAGGGATTGT+TGG + chr8_4:39215657-39215676 None:intergenic 30.0%
AAGAATCTTGTTCAACATTG+TGG + chr8_4:39215704-39215723 None:intergenic 30.0%
AATTAGGATGAGAACATTAG+AGG - chr8_4:39215938-39215957 Msa1325980:intron 30.0%
! GTAAGAGTCTTTGTTTAGAT+TGG - chr8_4:39215988-39216007 Msa1325980:intron 30.0%
ATTGTTGAAATGATTTAGGC+AGG - chr8_4:39216056-39216075 Msa1325980:intron 30.0%
TTGTTGAAATGATTTAGGCA+GGG - chr8_4:39216057-39216076 Msa1325980:intron 30.0%
!!! GAGATACTATTTTGGTTATG+TGG - chr8_4:39216197-39216216 Msa1325980:intron 30.0%
AATTAGCATCTGACTAATGA+GGG + chr8_4:39216230-39216249 None:intergenic 30.0%
GATAGGCATGAAATCATATT+AGG - chr8_4:39216779-39216798 Msa1325980:intron 30.0%
!! ATAGGCACTGATATCATATT+AGG - chr8_4:39216947-39216966 Msa1325980:intron 30.0%
!! ATAGGCACTGATATCATATT+AGG - chr8_4:39216947-39216966 Msa1325980:intron 30.0%
GCTAGCAAAAACATGATATT+CGG - chr8_4:39217246-39217265 Msa1325980:intron 30.0%
GCTAGCAAAAACATGATATT+CGG - chr8_4:39217246-39217265 Msa1325980:intron 30.0%
TGACCAAAGTTTATAAAGAG+AGG + chr8_4:39217536-39217555 None:intergenic 30.0%
GACCTTATCTTTAATCTATG+TGG - chr8_4:39217556-39217575 Msa1325980:intron 30.0%
TCCCACATAGATTAAAGATA+AGG + chr8_4:39217561-39217580 None:intergenic 30.0%
GTAGGAACATTCCATATTAT+TGG + chr8_4:39217594-39217613 None:intergenic 30.0%
! TTATTGTATGTTACTTGGCT+TGG - chr8_4:39217670-39217689 Msa1325980:intron 30.0%
! TTCTCTAAGGGATATATTCA+TGG - chr8_4:39217781-39217800 Msa1325980:intron 30.0%
! TCTCTAAGGGATATATTCAT+GGG - chr8_4:39217782-39217801 Msa1325980:intron 30.0%
! AAAAGTATAGAATGACCTCA+AGG + chr8_4:39217822-39217841 None:intergenic 30.0%
!! GAAATTTTGAAGAGAGAAGT+AGG - chr8_4:39217913-39217932 Msa1325980:intron 30.0%
!!! AATTTTTTAAGACGGAAGTG+TGG - chr8_4:39218287-39218306 Msa1325980:intron 30.0%
! TATTTTCTTGATGCAATGGA+GGG - chr8_4:39218437-39218456 Msa1325980:intron 30.0%
AAGAGAGAGTTAAAATCTGT+GGG + chr8_4:39218540-39218559 None:intergenic 30.0%
! AGTATATTATAGGGAGTACA+AGG - chr8_4:39218947-39218966 Msa1325980:CDS 30.0%
! GTATATTATAGGGAGTACAA+GGG - chr8_4:39218948-39218967 Msa1325980:CDS 30.0%
TATACCTAATTGAAACCAAC+AGG + chr8_4:39219266-39219285 None:intergenic 30.0%
TAACAATAGAATGTAGCCAA+TGG - chr8_4:39219351-39219370 Msa1325980:CDS 30.0%
!!! TTTTATTTTGGCCATCTCTT+TGG + chr8_4:39219821-39219840 None:intergenic 30.0%
GTTACTCAAGAATTCAAACT+TGG - chr8_4:39219985-39220004 Msa1325980:five_prime_UTR 30.0%
AGACCACATATAGATAGAAC+CGG - chr8_4:39214911-39214930 Msa1325980:CDS 35.0%
GAAAAGGAACATGAATGAGT+TGG + chr8_4:39214956-39214975 None:intergenic 35.0%
TCAATATAATCACAAGTGCC+AGG + chr8_4:39215143-39215162 None:intergenic 35.0%
GCAAAATAATCCTTGAATGG+AGG - chr8_4:39215252-39215271 Msa1325980:CDS 35.0%
ACTAACATAGTCTGCATTCA+AGG + chr8_4:39215300-39215319 None:intergenic 35.0%
ACTAACAGAGTGTACATTCA+GGG + chr8_4:39215332-39215351 None:intergenic 35.0%
ACCAACAAGGTCTATATTCA+GGG - chr8_4:39215372-39215391 Msa1325980:CDS 35.0%
TTTGCAATTTCTCTGCATTG+AGG - chr8_4:39215400-39215419 Msa1325980:CDS 35.0%
TTGCAATTTCTCTGCATTGA+GGG - chr8_4:39215401-39215420 Msa1325980:CDS 35.0%
! ATATGATTCAAAGGAGTGTG+TGG + chr8_4:39215564-39215583 None:intergenic 35.0%
! ACAACTTTTGAGCAATAGGT+TGG - chr8_4:39215608-39215627 Msa1325980:intron 35.0%
TTGATTTAGGGATTGTTGGA+GGG + chr8_4:39215653-39215672 None:intergenic 35.0%
TTGTTCAACATTGTGGTGTT+CGG + chr8_4:39215697-39215716 None:intergenic 35.0%
CTCTTGATAAAGAGAGAATG+AGG - chr8_4:39215757-39215776 Msa1325980:intron 35.0%
AGAATGAGGAGAATGAGAAT+AGG - chr8_4:39215771-39215790 Msa1325980:intron 35.0%
! AGAATAGGACTAGCAAACAA+AGG - chr8_4:39215786-39215805 Msa1325980:intron 35.0%
!! CAAACAAAGGAAAAGTACCT+TGG - chr8_4:39215799-39215818 Msa1325980:intron 35.0%
!! AGGAAAAGTACCTTGGAATA+AGG - chr8_4:39215806-39215825 Msa1325980:intron 35.0%
!! GGAAAAGTACCTTGGAATAA+GGG - chr8_4:39215807-39215826 Msa1325980:intron 35.0%
!!! TTAGGCAGGGTTTTAAATAG+AGG - chr8_4:39216070-39216089 Msa1325980:intron 35.0%
!!! AGGGTTTTAAATAGAGGTTG+CGG - chr8_4:39216076-39216095 Msa1325980:intron 35.0%
ATCTCAGAGTCCTAAAATCA+AGG + chr8_4:39216182-39216201 None:intergenic 35.0%
!!! AGGACTCTGAGATACTATTT+TGG - chr8_4:39216189-39216208 Msa1325980:intron 35.0%
CAATTAGCATCTGACTAATG+AGG + chr8_4:39216231-39216250 None:intergenic 35.0%
CTCATTAGTCAGATGCTAAT+TGG - chr8_4:39216229-39216248 Msa1325980:intron 35.0%
!! TTCTTTTACTTGGTAGTTCC+TGG - chr8_4:39216268-39216287 Msa1325980:intron 35.0%
AATGACCAGAAGTGAATCAT+GGG + chr8_4:39216294-39216313 None:intergenic 35.0%
!!! TTTTCAGGTGAAGAAGAAGA+TGG - chr8_4:39216346-39216365 Msa1325980:intron 35.0%
TTGTGTTTACCTATGACAAC+GGG + chr8_4:39216381-39216400 None:intergenic 35.0%
CTTGTGTTTACCTATGACAA+CGG + chr8_4:39216382-39216401 None:intergenic 35.0%
TAAGCTTACAATCTGTCTTG+AGG + chr8_4:39216435-39216454 None:intergenic 35.0%
GATAGCAAAAACCTGATAGT+TGG - chr8_4:39216739-39216758 Msa1325980:intron 35.0%
ATATGATTTCATGCCTATCC+AGG + chr8_4:39216778-39216797 None:intergenic 35.0%
!! TTTTTGCTATCTAACCACTC+CGG + chr8_4:39216897-39216916 None:intergenic 35.0%
GATAGCAAAAACCTGATAGT+CGG - chr8_4:39216739-39216758 Msa1325980:intron 35.0%
GATAGCAAAAACCTGATAGT+CGG - chr8_4:39216739-39216758 Msa1325980:intron 35.0%
! ATACGCACTGATAGCATATT+AGG - chr8_4:39217455-39217474 Msa1325980:intron 35.0%
GTGCCTCTCTTTATAAACTT+TGG - chr8_4:39217530-39217549 Msa1325980:intron 35.0%
TCTTTAATCTATGTGGGACT+TGG - chr8_4:39217563-39217582 Msa1325980:intron 35.0%
GTTCCTACTGTACATAATTC+TGG - chr8_4:39217606-39217625 Msa1325980:intron 35.0%
GCTTATTTGTCTAAACCTTG+AGG - chr8_4:39217804-39217823 Msa1325980:intron 35.0%
GGCAGCCCTTATATTAATAA+GGG + chr8_4:39217861-39217880 None:intergenic 35.0%
AGGCAGCCCTTATATTAATA+AGG + chr8_4:39217862-39217881 None:intergenic 35.0%
TTATTAATATAAGGGCTGCC+TGG - chr8_4:39217861-39217880 Msa1325980:intron 35.0%
GAGTTTGAGAAGAGAGAAAA+AGG - chr8_4:39217943-39217962 Msa1325980:intron 35.0%
TAAGTTATAGTACGGAAGTG+TGG - chr8_4:39218231-39218250 Msa1325980:intron 35.0%
! GTATTTTCTTGATGCAATGG+AGG - chr8_4:39218436-39218455 Msa1325980:intron 35.0%
!!! CTGATTTTTGAGTCTTCTCA+TGG + chr8_4:39218512-39218531 None:intergenic 35.0%
TGAGAAGACTCAAAAATCAG+TGG - chr8_4:39218512-39218531 Msa1325980:intron 35.0%
GAGAAGACTCAAAAATCAGT+GGG - chr8_4:39218513-39218532 Msa1325980:intron 35.0%
AGAGAGAGTTAAAATCTGTG+GGG + chr8_4:39218539-39218558 None:intergenic 35.0%
GAAGAGAGAGTTAAAATCTG+TGG + chr8_4:39218541-39218560 None:intergenic 35.0%
!! TTACACAAGAGGTTGTTTCT+AGG - chr8_4:39218740-39218759 Msa1325980:intron 35.0%
!!! TTTTAGGTTGTCTTGCTCTT+TGG - chr8_4:39219322-39219341 Msa1325980:CDS 35.0%
ATTGGAGAATGAATTGCCAT+TGG + chr8_4:39219370-39219389 None:intergenic 35.0%
!! CTATGTTTTGTTCCCATAAG+AGG + chr8_4:39219501-39219520 None:intergenic 35.0%
!! TGGTCAAGTTGAGTTAGATT+GGG - chr8_4:39219546-39219565 Msa1325980:intron 35.0%
GAAAAGCTGATGACAATTGT+TGG - chr8_4:39219637-39219656 Msa1325980:intron 35.0%
ATAGCCAAATCAGCAAAGAA+AGG - chr8_4:39219694-39219713 Msa1325980:intron 35.0%
TGGAGAAGAAGAACTTGATT+GGG - chr8_4:39219723-39219742 Msa1325980:intron 35.0%
AGAGATGGCCAAAATAAAAG+CGG - chr8_4:39219822-39219841 Msa1325980:intron 35.0%
!! CTCTTTCTCCGCTTTTATTT+TGG + chr8_4:39219833-39219852 None:intergenic 35.0%
CAAAATAAAAGCGGAGAAAG+AGG - chr8_4:39219831-39219850 Msa1325980:intron 35.0%
TCAACCATACAAAAATGCAG+AGG - chr8_4:39219942-39219961 Msa1325980:five_prime_UTR 35.0%
! TCTTCCTCTGCATTTTTGTA+TGG + chr8_4:39219949-39219968 None:intergenic 35.0%
GAATTCTTGAGTAACATCCT+CGG + chr8_4:39219980-39219999 None:intergenic 35.0%
ACTCCGGTTCTATCTATATG+TGG + chr8_4:39214917-39214936 None:intergenic 40.0%
TTGAAGTAGAGCATGTTGGT+TGG + chr8_4:39214998-39215017 None:intergenic 40.0%
! TGAGTTGAAGTAGAGCATGT+TGG + chr8_4:39215002-39215021 None:intergenic 40.0%
TATAATCACAAGTGCCAGGA+CGG + chr8_4:39215139-39215158 None:intergenic 40.0%
! AGTCACTTTAGACCCTGAAT+AGG - chr8_4:39215190-39215209 Msa1325980:CDS 40.0%
GACGACTCATTTCCTATTCA+GGG + chr8_4:39215205-39215224 None:intergenic 40.0%
TGACGACTCATTTCCTATTC+AGG + chr8_4:39215206-39215225 None:intergenic 40.0%
GACTAACAGAGTGTACATTC+AGG + chr8_4:39215333-39215352 None:intergenic 40.0%
GACCTTGTTGGTCAATTTCA+GGG + chr8_4:39215364-39215383 None:intergenic 40.0%
AGACCTTGTTGGTCAATTTC+AGG + chr8_4:39215365-39215384 None:intergenic 40.0%
GACCAACAAGGTCTATATTC+AGG - chr8_4:39215371-39215390 Msa1325980:CDS 40.0%
TCCCTGAATATAGACCTTGT+TGG + chr8_4:39215376-39215395 None:intergenic 40.0%
GAAAATGTTGTCAGTGTGAG+AGG - chr8_4:39215528-39215547 Msa1325980:intron 40.0%
! GGCAACAACTTTTGAGCAAT+AGG - chr8_4:39215604-39215623 Msa1325980:intron 40.0%
TGATTTAGGGATTGTTGGAG+GGG + chr8_4:39215652-39215671 None:intergenic 40.0%
! GTTGATTTAGGGATTGTTGG+AGG + chr8_4:39215654-39215673 None:intergenic 40.0%
AAGTACCTTGGAATAAGGGA+AGG - chr8_4:39215811-39215830 Msa1325980:intron 40.0%
TGTTTCCTTCCCTTATTCCA+AGG + chr8_4:39215819-39215838 None:intergenic 40.0%
TTCTCATCCTAATTCGCTCA+CGG + chr8_4:39215932-39215951 None:intergenic 40.0%
! GAGAACATTAGAGGCTTTGA+AGG - chr8_4:39215947-39215966 Msa1325980:intron 40.0%
TCTTACTTGACTTCACCTTG+GGG + chr8_4:39215974-39215993 None:intergenic 40.0%
CTCTTACTTGACTTCACCTT+GGG + chr8_4:39215975-39215994 None:intergenic 40.0%
ACTCTTACTTGACTTCACCT+TGG + chr8_4:39215976-39215995 None:intergenic 40.0%
GTTAAATGTGGCCTCAATTG+CGG - chr8_4:39216108-39216127 Msa1325980:intron 40.0%
GAATGACCAGAAGTGAATCA+TGG + chr8_4:39216295-39216314 None:intergenic 40.0%
TGTGTTTACCTATGACAACG+GGG + chr8_4:39216380-39216399 None:intergenic 40.0%
TATGATATCAGTGCCTATCC+AGG + chr8_4:39216945-39216964 None:intergenic 40.0%
TATGATATCAGTGCCTATCC+AGG + chr8_4:39216945-39216964 None:intergenic 40.0%
CGCTCCAAATGTTCAATTCT+GGG + chr8_4:39217207-39217226 None:intergenic 40.0%
ACGCTCCAAATGTTCAATTC+TGG + chr8_4:39217208-39217227 None:intergenic 40.0%
CGCTCCAAATGTTCAATTCT+GGG + chr8_4:39217207-39217226 None:intergenic 40.0%
ACGCTCCAAATGTTCAATTC+TGG + chr8_4:39217208-39217227 None:intergenic 40.0%
CCACCAGAATTATGTACAGT+AGG + chr8_4:39217612-39217631 None:intergenic 40.0%
CCTACTGTACATAATTCTGG+TGG - chr8_4:39217609-39217628 Msa1325980:intron 40.0%
! GATGCAATGGAGGGTATAAT+TGG - chr8_4:39218446-39218465 Msa1325980:intron 40.0%
TCTCATGGATGAGAAGAAAC+AGG + chr8_4:39218497-39218516 None:intergenic 40.0%
! ACACTTCTCTTGTTTGGTTG+TGG + chr8_4:39218575-39218594 None:intergenic 40.0%
! CAACCAAACAAGAGAAGTGT+AGG - chr8_4:39218575-39218594 Msa1325980:intron 40.0%
AGTCCTACACTTCTCTTGTT+TGG + chr8_4:39218581-39218600 None:intergenic 40.0%
GAAGTTGAAGAGAGAGAAGT+AGG + chr8_4:39218609-39218628 None:intergenic 40.0%
GTGTTTGGTAGAGGAGAAAA+AGG + chr8_4:39218639-39218658 None:intergenic 40.0%
CTTTACACTGTGTTTGGTAG+AGG + chr8_4:39218648-39218667 None:intergenic 40.0%
AGACATAAGGGTAACAACCT+TGG + chr8_4:39218815-39218834 None:intergenic 40.0%
AACACAGTGAAATGATCGAG+AGG + chr8_4:39219025-39219044 None:intergenic 40.0%
!! TCGTCCTGTTGGTTTCAATT+AGG - chr8_4:39219259-39219278 Msa1325980:CDS 40.0%
!! TTATTCTCTGAGACGTGTCT+GGG - chr8_4:39219435-39219454 Msa1325980:intron 40.0%
! GGAGCAGTTTTTCCTCTTAT+GGG - chr8_4:39219486-39219505 Msa1325980:intron 40.0%
ATAGCAAATGCAGCCAAGAA+AGG - chr8_4:39219517-39219536 Msa1325980:intron 40.0%
!! GTGGTCAAGTTGAGTTAGAT+TGG - chr8_4:39219545-39219564 Msa1325980:intron 40.0%
CCAAATCAGCAAAGAAAGGA+GGG - chr8_4:39219698-39219717 Msa1325980:intron 40.0%
GTGGAGAAGAAGAACTTGAT+TGG - chr8_4:39219722-39219741 Msa1325980:intron 40.0%
GAGCAGTTAGGAAGGTGAAA+AGG + chr8_4:39214972-39214991 None:intergenic 45.0%
GTTGGAAAGAGCAGTTAGGA+AGG + chr8_4:39214980-39214999 None:intergenic 45.0%
GTTGGTTGGAAAGAGCAGTT+AGG + chr8_4:39214984-39215003 None:intergenic 45.0%
GCACGGACACTTAAGATTGA+AGG - chr8_4:39215090-39215109 Msa1325980:CDS 45.0%
AACAGAGTCTCCTCCATTCA+AGG + chr8_4:39215265-39215284 None:intergenic 45.0%
GTCCCTGAAATTGACCAACA+AGG - chr8_4:39215359-39215378 Msa1325980:intron 45.0%
TCTCATCCTAATTCGCTCAC+GGG + chr8_4:39215931-39215950 None:intergenic 45.0%
CGGAGAATCGCAGTTAAATG+TGG - chr8_4:39216096-39216115 Msa1325980:intron 45.0%
TGTTCCCAAAACCGCAATTG+AGG + chr8_4:39216122-39216141 None:intergenic 45.0%
GCTTACAATCTGTCTTGAGG+AGG + chr8_4:39216432-39216451 None:intergenic 45.0%
CGCTCCAAATGTTCAATCCT+GGG + chr8_4:39216704-39216723 None:intergenic 45.0%
ACGCTCCAAATGTTCAATCC+TGG + chr8_4:39216705-39216724 None:intergenic 45.0%
!! CACTACAAGTTGGTTGCGTA+CGG + chr8_4:39216828-39216847 None:intergenic 45.0%
CAACCAACTTGTAGTGTGAC+CGG - chr8_4:39216832-39216851 Msa1325980:intron 45.0%
CGCTCCAAATGTTCAATCCT+GGG + chr8_4:39216704-39216723 None:intergenic 45.0%
ACGCTCCAAATGTTCAATCC+TGG + chr8_4:39216705-39216724 None:intergenic 45.0%
! TTGAACATTTGGAGCGTGAC+CGG - chr8_4:39216708-39216727 Msa1325980:intron 45.0%
TGGTTGCGTAAGGTTGAGTT+AGG + chr8_4:39216986-39217005 None:intergenic 45.0%
AATGTTCAATCCTGGGTGTG+AGG + chr8_4:39217032-39217051 None:intergenic 45.0%
CACACCCAGGATTGAACATT+TGG - chr8_4:39217032-39217051 Msa1325980:intron 45.0%
CGCTCCAAATGTTCAATCCT+GGG + chr8_4:39216704-39216723 None:intergenic 45.0%
ACGCTCCAAATGTTCAATCC+TGG + chr8_4:39216705-39216724 None:intergenic 45.0%
! TTGAACATTTGGAGCGTGAC+CGG - chr8_4:39216708-39216727 Msa1325980:intron 45.0%
!! TTTTTGCTATCGAGCCACTC+CGG + chr8_4:39217065-39217084 None:intergenic 45.0%
TCGTTGCGTAAGGTTGAGTT+AGG + chr8_4:39217154-39217173 None:intergenic 45.0%
AATGTTCAATTCTGGGCGTG+AGG + chr8_4:39217200-39217219 None:intergenic 45.0%
CACGCCCAGAATTGAACATT+TGG - chr8_4:39217200-39217219 Msa1325980:intron 45.0%
! TTGAACATTTGGAGCGTGAC+CGG - chr8_4:39216708-39216727 Msa1325980:intron 45.0%
! CATGATATTCGGTGACCCAA+CGG - chr8_4:39217257-39217276 Msa1325980:intron 45.0%
! ATGATATTCGGTGACCCAAC+GGG - chr8_4:39217258-39217277 Msa1325980:intron 45.0%
CTAACTATTAGCGCGTATCC+AGG + chr8_4:39217285-39217304 None:intergenic 45.0%
CTGGATACGCGCTAATAGTT+AGG - chr8_4:39217283-39217302 Msa1325980:intron 45.0%
TCGTTGCGTAAGGTTGAGTT+AGG + chr8_4:39217154-39217173 None:intergenic 45.0%
AATGTTCAATTCTGGGCGTG+AGG + chr8_4:39217200-39217219 None:intergenic 45.0%
CACGCCCAGAATTGAACATT+TGG - chr8_4:39217200-39217219 Msa1325980:intron 45.0%
! TTGAACATTTGGAGCGTGAC+CGG - chr8_4:39216708-39216727 Msa1325980:intron 45.0%
! CATGATATTCGGTGACCCAA+CGG - chr8_4:39217257-39217276 Msa1325980:intron 45.0%
! ATGATATTCGGTGACCCAAC+GGG - chr8_4:39217258-39217277 Msa1325980:intron 45.0%
TATGCTATCAGTGCGTATCC+AGG + chr8_4:39217453-39217472 None:intergenic 45.0%
TGGTTGCGTAAGGTTGTGTT+AGG + chr8_4:39217494-39217513 None:intergenic 45.0%
!! CCTTACAAGTTGGTTGCGTA+AGG + chr8_4:39217504-39217523 None:intergenic 45.0%
CCTTACGCAACCAACTTGTA+AGG - chr8_4:39216993-39217012 Msa1325980:intron 45.0%
CAACCAACTTGTAAGGTCAG+CGG - chr8_4:39217508-39217527 Msa1325980:intron 45.0%
! TAATTCTGGTGGAAGAGCAC+AGG - chr8_4:39217620-39217639 Msa1325980:intron 45.0%
GTTGTTGTCACGTGACTGAA+AGG + chr8_4:39218780-39218799 None:intergenic 45.0%
ACAACTTTACCGTTGCACCA+AGG - chr8_4:39218795-39218814 Msa1325980:CDS 45.0%
ACAGTGAAATGATCGAGAGG+TGG + chr8_4:39219022-39219041 None:intergenic 45.0%
CTAGTATTGTAGTTGCAGCG+AGG - chr8_4:39219230-39219249 Msa1325980:CDS 45.0%
!! GTTATTCTCTGAGACGTGTC+TGG - chr8_4:39219434-39219453 Msa1325980:intron 45.0%
! GGGAGCAGTTTTTCCTCTTA+TGG - chr8_4:39219485-39219504 Msa1325980:intron 45.0%
CAAATGCAGCCAAGAAAGGA+GGG - chr8_4:39219521-39219540 Msa1325980:intron 45.0%
TTTCCTCTGCCTGCAGAATT+CGG + chr8_4:39219609-39219628 None:intergenic 45.0%
AATTCTGCAGGCAGAGGAAA+AGG - chr8_4:39219609-39219628 Msa1325980:intron 45.0%
GCCAAATCAGCAAAGAAAGG+AGG - chr8_4:39219697-39219716 Msa1325980:intron 45.0%
! CCCTCCTTTCTTTGCTGATT+TGG + chr8_4:39219701-39219720 None:intergenic 45.0%
GCTTCAGCGTATTACAGAGA+AGG - chr8_4:39219789-39219808 Msa1325980:intron 45.0%
GCGTATTACAGAGAAGGCAA+AGG - chr8_4:39219795-39219814 Msa1325980:intron 45.0%
AGAGAAAAGATCTCCGAGAG+AGG - chr8_4:39219893-39219912 Msa1325980:intron 45.0%
!!! CTCTAGCTTTTGTCCTCTCT+CGG + chr8_4:39219909-39219928 None:intergenic 45.0%
!!! ACATAATATTTTTTTTTTTA+AGG + chr8_4:39216406-39216425 None:intergenic 5.0%
!!! AAATTATTTTTTTCATAAAA+GGG + chr8_4:39218130-39218149 None:intergenic 5.0%
!!! TAAATTATTTTTTTCATAAA+AGG + chr8_4:39218131-39218150 None:intergenic 5.0%
ATAGATAGAACCGGAGTCGC+TGG - chr8_4:39214920-39214939 Msa1325980:CDS 50.0%
TTGAAGGCTTGTCCCAGTGT+CGG - chr8_4:39215106-39215125 Msa1325980:intron 50.0%
TCAGTGTCGTGTGTCGTGTA+TGG - chr8_4:39215468-39215487 Msa1325980:CDS 50.0%
AAGGGAAGGAAACACACTGC+AGG - chr8_4:39215825-39215844 Msa1325980:intron 50.0%
! TGTGGCCTCAATTGCGGTTT+TGG - chr8_4:39216114-39216133 Msa1325980:intron 50.0%
! GTGGCCTCAATTGCGGTTTT+GGG - chr8_4:39216115-39216134 Msa1325980:intron 50.0%
CTGAACATCCCCGTTGTCAT+AGG - chr8_4:39216369-39216388 Msa1325980:intron 50.0%
ATGTTCAATCCTGGGCGTGA+GGG + chr8_4:39216696-39216715 None:intergenic 50.0%
AATGTTCAATCCTGGGCGTG+AGG + chr8_4:39216697-39216716 None:intergenic 50.0%
CACGCCCAGGATTGAACATT+TGG - chr8_4:39216697-39216716 Msa1325980:intron 50.0%
! CATTTGGAGCGTGACAAGAG+TGG - chr8_4:39216713-39216732 Msa1325980:intron 50.0%
!! CCTGATAGTTGGTGACCCAA+CGG - chr8_4:39216750-39216769 Msa1325980:intron 50.0%
!! CTGATAGTTGGTGACCCAAC+GGG - chr8_4:39216751-39216770 Msa1325980:intron 50.0%
TGGTTGCGTACGGTTGAGTT+AGG + chr8_4:39216818-39216837 None:intergenic 50.0%
AGTCCGGTCACACTACAAGT+TGG + chr8_4:39216838-39216857 None:intergenic 50.0%
AATGTTCAATCCTGGGCGTG+AGG + chr8_4:39216697-39216716 None:intergenic 50.0%
CACGCCCAGGATTGAACATT+TGG - chr8_4:39216697-39216716 Msa1325980:intron 50.0%
!! CGCTACAAGTTGGTTGCGTA+AGG + chr8_4:39216996-39217015 None:intergenic 50.0%
CAACCAACTTGTAGCGTGAC+CGG - chr8_4:39217000-39217019 Msa1325980:intron 50.0%
CGCTTCATGTTCGTTGCGTA+AGG + chr8_4:39217164-39217183 None:intergenic 50.0%
CAACGAACATGAAGCGTGAC+CGG - chr8_4:39217168-39217187 Msa1325980:intron 50.0%
CGCTTCATGTTCGTTGCGTA+AGG + chr8_4:39217164-39217183 None:intergenic 50.0%
CAACGAACATGAAGCGTGAC+TGG - chr8_4:39217168-39217187 Msa1325980:intron 50.0%
AAACACACCCTTAGTGCACC+AGG + chr8_4:39217882-39217901 None:intergenic 50.0%
! TGGTGCACTAAGGGTGTGTT+TGG - chr8_4:39217881-39217900 Msa1325980:intron 50.0%
TGGTTGTGCACTTGTGCTGT+AGG + chr8_4:39218393-39218412 None:intergenic 50.0%
GCGGGACTTTACACTGTGTT+TGG + chr8_4:39218654-39218673 None:intergenic 50.0%
TGTAAAGTCCCGCATACGCA+AGG - chr8_4:39218661-39218680 Msa1325980:intron 50.0%
CAATTGATGAGACCCCTTCC+CGG + chr8_4:39218688-39218707 None:intergenic 50.0%
TCACGTGACTGAAAGGTCAC+GGG + chr8_4:39218773-39218792 None:intergenic 50.0%
GTCACGTGACTGAAAGGTCA+CGG + chr8_4:39218774-39218793 None:intergenic 50.0%
! GGGTAACAACCTTGGTGCAA+CGG + chr8_4:39218807-39218826 None:intergenic 50.0%
!! CGAGGTATTGTTCGTCCTGT+TGG - chr8_4:39219248-39219267 Msa1325980:CDS 50.0%
AAGAGCGACTGAAGTCACAG+CGG - chr8_4:39219458-39219477 Msa1325980:intron 50.0%
GCAAATGCAGCCAAGAAAGG+AGG - chr8_4:39219520-39219539 Msa1325980:intron 50.0%
TTGACCACTCCCTCCTTTCT+TGG + chr8_4:39219533-39219552 None:intergenic 50.0%
TGAGTTCCACCGAATTCTGC+AGG - chr8_4:39219597-39219616 Msa1325980:intron 50.0%
TCAGCAAAGAAAGGAGGGAG+TGG - chr8_4:39219703-39219722 Msa1325980:intron 50.0%
GAAGGCAAAGGCCAAAGAGA+TGG - chr8_4:39219807-39219826 Msa1325980:intron 50.0%
AGAGGAAGACAAATGTGCCG+AGG - chr8_4:39219960-39219979 Msa1325980:five_prime_UTR 50.0%
AACTCAGACACCAGCGACTC+CGG + chr8_4:39214933-39214952 None:intergenic 55.0%
GACGGCAATTGTCCGACACT+GGG + chr8_4:39215121-39215140 None:intergenic 55.0%
CAGAGACCCGTGAGCGAATT+AGG - chr8_4:39215922-39215941 Msa1325980:intron 55.0%
!! AGAGGCTTTGAAGGACCCCA+AGG - chr8_4:39215956-39215975 Msa1325980:intron 55.0%
CCAGAAGTGAATCATGGGCC+AGG + chr8_4:39216289-39216308 None:intergenic 55.0%
CCTGGCCCATGATTCACTTC+TGG - chr8_4:39216286-39216305 Msa1325980:intron 55.0%
CCGTTGGGTCACCAACTATC+AGG + chr8_4:39216753-39216772 None:intergenic 55.0%
ATGCCTATCCAGGACCCGTT+GGG + chr8_4:39216768-39216787 None:intergenic 55.0%
CCTGATAGTCGGTGACCCAA+CGG - chr8_4:39216917-39216936 Msa1325980:intron 55.0%
CTGATAGTCGGTGACCCAAC+GGG - chr8_4:39216918-39216937 Msa1325980:intron 55.0%
AGTCCGGTCACGCTACAAGT+TGG + chr8_4:39217006-39217025 None:intergenic 55.0%
CCTGATAGTCGGTGACCCAA+CGG - chr8_4:39216917-39216936 Msa1325980:intron 55.0%
CTGATAGTCGGTGACCCAAC+GGG - chr8_4:39216918-39216937 Msa1325980:intron 55.0%
TGCTAGCTATCGAGCCACTC+CGG + chr8_4:39217233-39217252 None:intergenic 55.0%
TGCTAGCTATCGAGCCACTC+CGG + chr8_4:39217233-39217252 None:intergenic 55.0%
GCACCGCTGACCTTACAAGT+TGG + chr8_4:39217514-39217533 None:intergenic 55.0%
CGGGAAGGGGTCTCATCAAT+TGG - chr8_4:39218686-39218705 Msa1325980:intron 55.0%
AGAGCGACTGAAGTCACAGC+GGG - chr8_4:39219459-39219478 Msa1325980:intron 55.0%
GGACGGCAATTGTCCGACAC+TGG + chr8_4:39215122-39215141 None:intergenic 60.0%
GTGTCGGACAATTGCCGTCC+TGG - chr8_4:39215122-39215141 Msa1325980:intron 60.0%
CGCTCACGGGTCTCTGCAAT+TGG + chr8_4:39215918-39215937 None:intergenic 60.0%
TCAATCCTGGGCGTGAGGGT+AGG + chr8_4:39216692-39216711 None:intergenic 60.0%
TGACCCAACGGGTCCTGGAT+AGG - chr8_4:39216762-39216781 Msa1325980:intron 60.0%
CATGCCTATCCAGGACCCGT+TGG + chr8_4:39216769-39216788 None:intergenic 60.0%
! CATTTGGAGCGTGACCGGAG+TGG - chr8_4:39216880-39216899 Msa1325980:intron 60.0%
! CCGTTGGGTCACCGACTATC+AGG + chr8_4:39216920-39216939 None:intergenic 60.0%
TGACCCAACGGGTCCTGGAT+AGG - chr8_4:39216762-39216781 Msa1325980:intron 60.0%
GTGCCTATCCAGGACCCGTT+GGG + chr8_4:39216935-39216954 None:intergenic 60.0%
AGTGCCTATCCAGGACCCGT+TGG + chr8_4:39216936-39216955 None:intergenic 60.0%
CCTGGGTGTGAGGTTGAGTC+CGG + chr8_4:39217022-39217041 None:intergenic 60.0%
! CATTTGGAGCGTGACCGGAG+TGG - chr8_4:39216880-39216899 Msa1325980:intron 60.0%
! CCGTTGGGTCACCGACTATC+AGG + chr8_4:39216920-39216939 None:intergenic 60.0%
TGACCCAACGGGTCCTGGAT+AGG - chr8_4:39216762-39216781 Msa1325980:intron 60.0%
GTGCCTATCCAGGACCCGTT+GGG + chr8_4:39216935-39216954 None:intergenic 60.0%
AGTGCCTATCCAGGACCCGT+TGG + chr8_4:39216936-39216955 None:intergenic 60.0%
TCTGGGCGTGAGGTTGAGTC+CGG + chr8_4:39217190-39217209 None:intergenic 60.0%
! CATTTGGAGCGTGACCGGAG+TGG - chr8_4:39216880-39216899 Msa1325980:intron 60.0%
! CATTTGGAGCGTGACCGGAG+TGG - chr8_4:39216880-39216899 Msa1325980:intron 60.0%
GTGCGTATCCAGGACCCGTT+GGG + chr8_4:39217443-39217462 None:intergenic 60.0%
AGTGCGTATCCAGGACCCGT+TGG + chr8_4:39217444-39217463 None:intergenic 60.0%
AAGGGCTGCCTGGTGCACTA+AGG - chr8_4:39217871-39217890 Msa1325980:intron 60.0%
AGGGCTGCCTGGTGCACTAA+GGG - chr8_4:39217872-39217891 Msa1325980:intron 60.0%
AGTCCCGCATACGCAAGGTC+CGG - chr8_4:39218666-39218685 Msa1325980:intron 60.0%
TTCCCGGACCTTGCGTATGC+GGG + chr8_4:39218672-39218691 None:intergenic 60.0%
CTTCCCGGACCTTGCGTATG+CGG + chr8_4:39218673-39218692 None:intergenic 60.0%
GCATACGCAAGGTCCGGGAA+GGG - chr8_4:39218672-39218691 Msa1325980:intron 60.0%
CATACGCAAGGTCCGGGAAG+GGG - chr8_4:39218673-39218692 Msa1325980:intron 60.0%
GACTGAAGTCACAGCGGGCA+GGG - chr8_4:39219464-39219483 Msa1325980:intron 60.0%
ACTGAAGTCACAGCGGGCAG+GGG - chr8_4:39219465-39219484 Msa1325980:intron 60.0%
GCAGCCAAGAAAGGAGGGAG+TGG - chr8_4:39219526-39219545 Msa1325980:intron 60.0%
CCTCTGCCTGCAGAATTCGG+TGG + chr8_4:39219606-39219625 None:intergenic 60.0%
CCACCGAATTCTGCAGGCAG+AGG - chr8_4:39219603-39219622 Msa1325980:intron 60.0%
!! GTTGGTGACCCAACGGGTCC+TGG - chr8_4:39216757-39216776 Msa1325980:intron 65.0%
CCTGGGCGTGAGGTTGAGTC+CGG + chr8_4:39216854-39216873 None:intergenic 65.0%
CCGGACTCAACCTCACACCC+AGG - chr8_4:39217019-39217038 Msa1325980:intron 65.0%
TTCGGTGACCCAACGGGTCC+TGG - chr8_4:39217264-39217283 Msa1325980:intron 65.0%
GCGCGTATCCAGGACCCGTT+GGG + chr8_4:39217275-39217294 None:intergenic 65.0%
AGCGCGTATCCAGGACCCGT+TGG + chr8_4:39217276-39217295 None:intergenic 65.0%
TTCGGTGACCCAACGGGTCC+TGG - chr8_4:39217264-39217283 Msa1325980:intron 65.0%
GTCCCGCATACGCAAGGTCC+GGG - chr8_4:39218667-39218686 Msa1325980:intron 65.0%
CGCATACGCAAGGTCCGGGA+AGG - chr8_4:39218671-39218690 Msa1325980:intron 65.0%
CGACTGAAGTCACAGCGGGC+AGG - chr8_4:39219463-39219482 Msa1325980:intron 65.0%
TTGGGCCTACCCTCACGCCC+AGG - chr8_4:39216684-39216703 Msa1325980:intron 70.0%
CCGGACTCAACCTCACGCCC+AGG - chr8_4:39216851-39216870 Msa1325980:intron 70.0%
GTCGGTGACCCAACGGGTCC+TGG - chr8_4:39216924-39216943 Msa1325980:intron 70.0%
GTCGGTGACCCAACGGGTCC+TGG - chr8_4:39216924-39216943 Msa1325980:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 39214907 39220020 39214907 ID=Msa1325980;Name=Msa1325980
chr8_4 mRNA 39214907 39220020 39214907 ID=Msa1325980-mRNA-1;Parent=Msa1325980;Name=Msa1325980-mRNA-1;_AED=0.26;_eAED=0.26;_QI=97|0.57|0.5|1|0.28|0.12|8|0|363
chr8_4 exon 39214907 39215121 39214907 ID=Msa1325980-mRNA-1:exon:11818;Parent=Msa1325980-mRNA-1
chr8_4 exon 39215131 39215354 39215131 ID=Msa1325980-mRNA-1:exon:11817;Parent=Msa1325980-mRNA-1
chr8_4 exon 39215370 39215516 39215370 ID=Msa1325980-mRNA-1:exon:11816;Parent=Msa1325980-mRNA-1
chr8_4 exon 39218537 39218574 39218537 ID=Msa1325980-mRNA-1:exon:11815;Parent=Msa1325980-mRNA-1
chr8_4 exon 39218777 39218853 39218777 ID=Msa1325980-mRNA-1:exon:11814;Parent=Msa1325980-mRNA-1
chr8_4 exon 39218940 39219002 39218940 ID=Msa1325980-mRNA-1:exon:11813;Parent=Msa1325980-mRNA-1
chr8_4 exon 39219081 39219385 39219081 ID=Msa1325980-mRNA-1:exon:11812;Parent=Msa1325980-mRNA-1
chr8_4 exon 39219904 39220020 39219904 ID=Msa1325980-mRNA-1:exon:11811;Parent=Msa1325980-mRNA-1
chr8_4 five_prime_UTR 39219924 39220020 39219924 ID=Msa1325980-mRNA-1:five_prime_utr;Parent=Msa1325980-mRNA-1
chr8_4 CDS 39219904 39219923 39219904 ID=Msa1325980-mRNA-1:cds;Parent=Msa1325980-mRNA-1
chr8_4 CDS 39219081 39219385 39219081 ID=Msa1325980-mRNA-1:cds;Parent=Msa1325980-mRNA-1
chr8_4 CDS 39218940 39219002 39218940 ID=Msa1325980-mRNA-1:cds;Parent=Msa1325980-mRNA-1
chr8_4 CDS 39218777 39218853 39218777 ID=Msa1325980-mRNA-1:cds;Parent=Msa1325980-mRNA-1
chr8_4 CDS 39218537 39218574 39218537 ID=Msa1325980-mRNA-1:cds;Parent=Msa1325980-mRNA-1
chr8_4 CDS 39215370 39215516 39215370 ID=Msa1325980-mRNA-1:cds;Parent=Msa1325980-mRNA-1
chr8_4 CDS 39215131 39215354 39215131 ID=Msa1325980-mRNA-1:cds;Parent=Msa1325980-mRNA-1
chr8_4 CDS 39214907 39215121 39214907 ID=Msa1325980-mRNA-1:cds;Parent=Msa1325980-mRNA-1
Gene Sequence

>Msa1325980

ATGCTCTACTTCAACTCAATTGTGAGAGGAATGTCTGTTCCACACACTCCTTTGAATCATATTCCCAACAATTATTATTCAAGGCAACAACTTTTGAGCAATAGGTTGGATTGCGCTTGTACATTTTCCCCTCCAACAATCCCTAAATCAACATTGTCTTTTTCTGTTGATGCCGAACACCACAATGTTGAACAAGATTCTTTTGATTATTTGAACAATGTCGACTCTCTAAAATCTCTTGATAAAGAGAGAATGAGGAGAATGAGAATAGGACTAGCAAACAAAGGAAAAGTACCTTGGAATAAGGGAAGGAAACACACTGCAGAGACCCGTGAGCGAATTAGGATGAGAACATTAGAGGCTTTGAAGGACCCCAAGGTGAAGTCAAGCAGGGTTTTAAATAGAGGTTGCGGAGAATCGCAGTTAAATGTGGCCTCAATTGCGGTTTTGGGAACATTAAAAACAGTGAAGAAGAAGATGGCTGAACATCCCCGTTGTCATAGTGATCAGATCAAGGAAAAGATAAGTTATTCTCTGAGACGTGTCTGGGAAGAGCGACTGAAGTCACAGCGGGCAGGGGAGCAGTTTTTCCTCTTATGGGAACAAAACATAGCAAATGCAGCCAAGAAAGGAGGGAGTGGTCAAGTTGACTATGATAAGATAAAAGAACAACTTGAGTTCCACCGAATTCTGCAGGCAGAGGAAAAGGAAAAAGAAAAGCTGATGACAATTGTTGGAACAAATAAATTATTTCATTTGTGGACGGAAATCATAGCCAAATCAGCAAAGAAAGGAGGGAGTGGAGAAGAAGAACTTGATTGGGATAGCTACGACAAGATAAAAGAAGAAATGATTCTTCTCAATCAGCTTCAGCAGAAGGCAAAGGCCAAAGAGATGGCCAAAATAAAAGCGGAGAAAGAGGCACAGATAAAAGCGATAAAAAAGGTTATGCTCACTCAAAAGAGAAAAGATCTCCGAGAGAGGACAAAAGCTAGAGAGAATATAAAGAATCAACCATACAAAAATGCAGAGGAAGACAAATGTGCCGAGGATGTTACTCAAGAATTCAAACTTGGCTCTAAATTAACT

Protein sequence

>Msa1325980

MLYFNSIVRGMSVPHTPLNHIPNNYYSRQQLLSNRLDCACTFSPPTIPKSTLSFSVDAEHHNVEQDSFDYLNNVDSLKSLDKERMRRMRIGLANKGKVPWNKGRKHTAETRERIRMRTLEALKDPKVKSSRVLNRGCGESQLNVASIAVLGTLKTVKKKMAEHPRCHSDQIKEKISYSLRRVWEERLKSQRAGEQFFLLWEQNIANAAKKGGSGQVDYDKIKEQLEFHRILQAEEKEKEKLMTIVGTNKLFHLWTEIIAKSAKKGGSGEEELDWDSYDKIKEEMILLNQLQQKAKAKEMAKIKAEKEAQIKAIKKVMLTQKRKDLRERTKARENIKNQPYKNAEEDKCAEDVTQEFKLGSKLT