AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125230 MtrunA17_Chr1g0187011 96.659 838 28 0 1 838 1 838 0.0 1661
Msa0125230 MtrunA17_Chr4g0071101 49.754 609 282 6 187 783 148 744 0.0 587
Msa0125230 MtrunA17_Chr6g0484411 45.941 579 298 7 193 769 195 760 8.21e-165 499
Msa0125230 MtrunA17_Chr6g0451621 42.949 624 295 8 205 806 145 729 6.50e-158 488
Msa0125230 MtrunA17_Chr8g0391141 42.029 552 263 7 208 750 100 603 3.28e-137 421
Msa0125230 MtrunA17_Chr2g0330811 40.681 617 329 12 180 770 139 744 6.49e-130 406
Msa0125230 MtrunA17_Chr8g0366041 43.172 227 119 2 222 444 1 221 7.80e-54 186
Msa0125230 MtrunA17_Chr1g0171521 39.583 144 81 3 596 737 125 264 1.22e-24 104
Msa0125230 MtrunA17_Chr4g0067911 35.294 187 117 2 592 778 163 345 4.82e-24 104
Msa0125230 MtrunA17_Chr4g0033621 36.496 137 84 1 627 763 170 303 1.02e-19 92.8
Msa0125230 MtrunA17_Chr8g0391361 34.694 147 92 2 592 738 9 151 1.71e-19 86.7
Msa0125230 MtrunA17_Chr6g0449261 30.824 279 160 9 566 819 77 347 1.12e-18 90.9
Msa0125230 MtrunA17_Chr8g0366051 38.947 95 58 0 509 603 7 101 4.73e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125230 AT3G23070.1 60.147 818 284 16 1 793 1 801 0.0 906
Msa0125230 AT4G14510.1 59.362 721 238 10 111 793 125 828 0.0 825
Msa0125230 AT4G29750.1 45.911 697 329 14 133 819 181 839 0.0 573
Msa0125230 AT4G29750.2 46.508 673 313 13 133 795 181 816 0.0 567
Msa0125230 AT3G18390.1 46.411 599 304 4 179 769 203 792 1.58e-176 531
Msa0125230 AT3G01370.1 40.637 753 402 11 109 834 58 792 1.52e-171 523
Msa0125230 AT5G16180.1 38.907 604 299 10 176 773 177 716 1.53e-114 365
Msa0125230 AT5G16180.2 36.977 430 202 9 176 600 177 542 2.78e-64 225
Msa0125230 AT3G25440.2 36.813 182 107 3 594 770 74 252 1.16e-28 119
Msa0125230 AT3G25440.1 36.813 182 107 3 594 770 138 316 4.19e-28 119
Msa0125230 AT3G25440.4 35.976 164 97 3 612 770 1 161 2.16e-26 110
Msa0125230 AT3G25440.3 35.976 164 97 3 612 770 1 161 2.16e-26 110
Msa0125230 AT3G25440.5 35.976 164 97 3 612 770 1 161 2.16e-26 110
Msa0125230 AT4G13070.1 39.759 166 91 4 592 756 145 302 7.61e-23 101
Msa0125230 AT2G28480.1 38.686 137 81 1 627 763 161 294 4.56e-21 96.7
Msa0125230 AT3G27550.3 36.364 143 81 4 626 766 88 222 1.08e-15 81.3
Msa0125230 AT3G27550.1 36.364 143 81 4 626 766 88 222 1.08e-15 81.3
Msa0125230 AT3G27550.2 36.364 143 81 4 626 766 144 278 1.11e-15 81.6
Msa0125230 AT5G54890.1 35.664 143 75 7 164 301 104 234 7.27e-11 65.5

Find 215 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCAAGAAGTCTTTATTTC+TGG 0.089553 1_3:-53647285 None:intergenic
GTTGAGAAATTGAAGAAATT+TGG 0.119699 1_3:+53644948 Msa0125230:CDS
TCTTCATCGGTTATACTTTC+AGG 0.150823 1_3:-53647973 None:intergenic
GAAGAAGGAGTGATAGAAAA+AGG 0.162996 1_3:+53645002 Msa0125230:CDS
AAAACCCCGCGTGGCGGTTT+TGG 0.168258 1_3:-53644831 None:intergenic
TAATTGCTTATACACTATTA+AGG 0.248837 1_3:+53650578 Msa0125230:three_prime_UTR
CTCCAGAAATAAAGACTTCT+TGG 0.255053 1_3:+53647283 Msa0125230:CDS
GTTCTTACTCTGTTCTGTTC+TGG 0.277137 1_3:-53644484 None:intergenic
CCCTTCAGAGTTCTTCCTTT+CGG 0.281539 1_3:+53646399 Msa0125230:CDS
TTGAGAAATTGAAGAAATTT+GGG 0.281718 1_3:+53644949 Msa0125230:CDS
AATTATCAAGGTTCTGGAAA+TGG 0.293760 1_3:+53644855 Msa0125230:CDS
AAGACACCTCCACCTTCATT+AGG 0.294774 1_3:-53647924 None:intergenic
ATGAAAGCTTTCTTACTTCT+TGG 0.300263 1_3:+53648027 Msa0125230:CDS
TTAACATATGCTTGAGGAAT+AGG 0.312732 1_3:+53650670 Msa0125230:three_prime_UTR
GATATTCTATACTTGTTTAC+CGG 0.312793 1_3:+53648412 Msa0125230:CDS
GAAATTGAAGATGAAGATTC+TGG 0.316685 1_3:-53644509 None:intergenic
ATGCTTCCTCCAACTGTTCC+TGG 0.321744 1_3:+53646366 Msa0125230:CDS
CTCTTTGTCAAGAGATTCTT+CGG 0.322123 1_3:-53648468 None:intergenic
AGATTTATGTTTCGCAAGTT+AGG 0.324411 1_3:+53647997 Msa0125230:CDS
AGCTGAGAGTGGTGGTGTTC+TGG 0.328282 1_3:+53648365 Msa0125230:CDS
TGTTTATTCTGTTGTATTGA+AGG 0.336472 1_3:-53646087 None:intergenic
CTCCTCATCCTGCATTGCTT+TGG 0.339324 1_3:-53647375 None:intergenic
GGAAGACTTCTGAGATTGTT+AGG 0.341719 1_3:+53645351 Msa0125230:CDS
AGATGAAGTAGACAAGTTAT+TGG 0.342599 1_3:+53646281 Msa0125230:CDS
TCATCTTCATAACTGAGTTT+TGG 0.351011 1_3:-53646264 None:intergenic
GAAGAGGATGCATGAGATAT+TGG 0.355195 1_3:+53645406 Msa0125230:CDS
ATCAATAGTACGTACTATTT+CGG 0.357584 1_3:-53649962 None:intergenic
CGGAGAGAATGATGGAAGTT+AGG 0.358160 1_3:-53644651 None:intergenic
GAATGAAGAGTGGAAATTAA+AGG 0.360053 1_3:-53644569 None:intergenic
CCATTTGGGATTGGAAGTTA+TGG 0.366402 1_3:+53645098 Msa0125230:CDS
AAACTGGTGGTCTGGTGATT+TGG 0.369744 1_3:+53646016 Msa0125230:CDS
TGGAAATTAAAGGATGATTA+TGG 0.374945 1_3:-53644559 None:intergenic
ATGTATGTATATACATTTGT+TGG 0.380642 1_3:+53650611 Msa0125230:three_prime_UTR
CCAATCCCAAATGGTGATTC+CGG 0.385507 1_3:-53645089 None:intergenic
TCAGCGGAGGCTGGGACTCT+TGG 0.390512 1_3:+53647458 Msa0125230:CDS
ATTATCAAGGTTCTGGAAAT+GGG 0.399633 1_3:+53644856 Msa0125230:CDS
CTTCATCGGTTATACTTTCA+GGG 0.406225 1_3:-53647972 None:intergenic
TTTCGCCGGAATCACCATTT+GGG 0.408552 1_3:+53645084 Msa0125230:CDS
TATCAGTGCAGAAACTCTTA+TGG 0.409703 1_3:-53644776 None:intergenic
CTTTGTGAGGCAAATTCCTC+AGG 0.411665 1_3:-53650383 None:intergenic
GGGTCTGCTCTGCTTTCTGA+TGG 0.412809 1_3:-53647952 None:intergenic
ATTGTATAACAGATTAGATT+CGG 0.413344 1_3:+53650117 Msa0125230:CDS
TTAAAGGATGATTATGGTGT+TGG 0.414002 1_3:-53644553 None:intergenic
CAATTATCTTGACCAGTTCC+CGG 0.415828 1_3:-53648293 None:intergenic
GAGACCGACACTTGGTTTCA+AGG 0.416038 1_3:+53646425 Msa0125230:CDS
CTTGACAAAGAGAAAGGCTT+TGG 0.418224 1_3:+53648479 Msa0125230:CDS
GAAAACCCACCTCTTGTATT+AGG 0.419315 1_3:-53645065 None:intergenic
GAAGAAGAGTAAGACTTCTA+TGG 0.420084 1_3:+53645202 Msa0125230:CDS
GTGAGTAGTGGATAGAAAAC+TGG 0.422425 1_3:-53644433 None:intergenic
CCAGGCCAATCTGTATATCT+AGG 0.423225 1_3:-53646315 None:intergenic
TCAGAGTTGTCAGCGGAGGC+TGG 0.425100 1_3:+53647449 Msa0125230:CDS
TTCAACTTTGCAAAGTAAAG+TGG 0.426017 1_3:+53649927 Msa0125230:CDS
GTGGTGAAGTGAGGTTTCCT+TGG 0.428101 1_3:+53645132 Msa0125230:CDS
TCAACTTCTTCATCCACTAC+TGG 0.428246 1_3:-53645161 None:intergenic
GCCTCACAAAGTTGAAGGTC+AGG 0.432274 1_3:+53650395 Msa0125230:exon
GGTCTGGTGATTTGGAGGTC+TGG 0.432516 1_3:+53646024 Msa0125230:CDS
TGGCAGTGACACTCAATTCA+TGG 0.436703 1_3:+53650461 Msa0125230:three_prime_UTR
CTCTTCTGCCATTCTCTCAC+TGG 0.438822 1_3:-53646685 None:intergenic
CCGGAATCACCATTTGGGAT+TGG 0.439424 1_3:+53645089 Msa0125230:CDS
TAAAGGATGATTATGGTGTT+GGG 0.441276 1_3:-53644552 None:intergenic
AACAGAATAAACAGTTATAT+AGG 0.443141 1_3:+53646097 Msa0125230:CDS
TCAGTTGACAAAGTTTCAAA+AGG 0.445552 1_3:+53648390 Msa0125230:CDS
AGACACCTCCACCTTCATTA+GGG 0.451516 1_3:-53647923 None:intergenic
TGGGACTCTTGGCGAAACTT+TGG 0.452256 1_3:+53647469 Msa0125230:CDS
TGCACTTGCACTGGAAGTAC+CGG 0.454136 1_3:+53648274 Msa0125230:CDS
CTTCTCTACGAAGGATTGCT+AGG 0.455152 1_3:+53646454 Msa0125230:CDS
TTCTTCGGTCTCATCATTGA+AGG 0.455321 1_3:-53648453 None:intergenic
ATTGTTAGGCTTAAGTTTGA+AGG 0.455427 1_3:+53645365 Msa0125230:CDS
CATTCATGTAAATTCATCAA+TGG 0.457268 1_3:+53644587 Msa0125230:exon
ATTGAGCATGAACTTATCAA+TGG 0.464762 1_3:-53650530 None:intergenic
AACTCTGATGTATTAATAGC+TGG 0.465778 1_3:-53647434 None:intergenic
AACTCTGTTTCCTTGTACAG+AGG 0.467317 1_3:+53646048 Msa0125230:CDS
GCACTGGAAGTACCGGGAAC+TGG 0.473145 1_3:+53648281 Msa0125230:CDS
TTCTAACTTTCTAACGATGT+TGG 0.473608 1_3:-53647573 None:intergenic
ATTTGTTGGTTAAGTTCTCT+AGG 0.473943 1_3:+53650625 Msa0125230:three_prime_UTR
CATTCTTTCCCTCTCTAGCA+AGG 0.474225 1_3:-53647351 None:intergenic
AGCAAGGCTTGAGTGACATC+TGG 0.475279 1_3:-53647335 None:intergenic
ACTGGTCAAGATAATTGTTA+AGG 0.475719 1_3:+53648299 Msa0125230:CDS
AAGAAGCATAAGACGAGAAT+CGG 0.477508 1_3:+53645281 Msa0125230:CDS
AAGAAATTGTGGTGAAGAAA+CGG 0.481559 1_3:-53644671 None:intergenic
ACAGGCAGTGGCTCACATCC+AGG 0.483842 1_3:-53646333 None:intergenic
TACTCACTAGTATCAAGCTT+TGG 0.484985 1_3:+53644449 Msa0125230:five_prime_UTR
GGTAGAAACAAGCAGCTTCA+AGG 0.487654 1_3:+53646582 Msa0125230:intron
AATGAGAATATAAAAGAAGA+AGG 0.487703 1_3:+53644987 Msa0125230:CDS
CTGAAGGGAGGTTGGTAACC+AGG 0.489214 1_3:-53646384 None:intergenic
AAGAATGGCCAAAGCAATGC+AGG 0.492191 1_3:+53647367 Msa0125230:CDS
CAGAGTTGTCAGCGGAGGCT+GGG 0.492293 1_3:+53647450 Msa0125230:CDS
TTCCGGATGCAGAAACTGAC+AGG 0.492339 1_3:+53647248 Msa0125230:intron
GAGAATGGCAGAAGAGATCA+AGG 0.494655 1_3:+53646692 Msa0125230:CDS
GCTAACTACCAGTGAGAGAA+TGG 0.496690 1_3:+53646677 Msa0125230:CDS
AAGTTAGGAGAAGTGTGAAA+TGG 0.499054 1_3:-53644636 None:intergenic
TTGAAGAGAGGACGAATTCG+CGG 0.500477 1_3:+53645180 Msa0125230:CDS
TGACGATTCACATAGGCATC+AGG 0.501133 1_3:-53650437 None:intergenic
GGCCAAAGCAATGCAGGATG+AGG 0.501682 1_3:+53647373 Msa0125230:CDS
AGAGTTTCTGCACTGATACA+TGG 0.502378 1_3:+53644781 Msa0125230:CDS
GTCTCATCATTGAAGGGCGC+TGG 0.502908 1_3:-53648446 None:intergenic
CTGGTGGTCTGGTGATTTGG+AGG 0.504053 1_3:+53646019 Msa0125230:CDS
GAATCTCTTGACAAAGAGAA+AGG 0.507492 1_3:+53648473 Msa0125230:CDS
ATAGAGAAAGTAAAGGAGGA+AGG 0.508637 1_3:+53650085 Msa0125230:CDS
TATACTTGTTTACCGGGGAA+AGG 0.509017 1_3:+53648419 Msa0125230:CDS
CCATAACTTCCAATCCCAAA+TGG 0.510654 1_3:-53645098 None:intergenic
ACAAATAGAGAAAGTAAAGG+AGG 0.514034 1_3:+53650081 Msa0125230:CDS
AGTTAGGAGAAGTGTGAAAT+GGG 0.515124 1_3:-53644635 None:intergenic
AATTTGCCTCACAAAGTTGA+AGG 0.518599 1_3:+53650390 Msa0125230:CDS
TCGAAAACATGCACTTGCAC+TGG 0.520324 1_3:+53648265 Msa0125230:CDS
AAGTGTGAAATGGGTGAAGT+TGG 0.525049 1_3:-53644626 None:intergenic
GTGAGGCAAATTCCTCAGGT+TGG 0.525666 1_3:-53650379 None:intergenic
AAGACGAGAATCGGTGGTGG+TGG 0.526783 1_3:+53645290 Msa0125230:CDS
ATATTCTATACTTGTTTACC+GGG 0.530412 1_3:+53648413 Msa0125230:CDS
TCCACTACTGGTTTCTCCCA+AGG 0.538339 1_3:-53645149 None:intergenic
CTTGCTAGAGAGGGAAAGAA+TGG 0.538645 1_3:+53647352 Msa0125230:CDS
TGCAAAGTGGGGAAAGACAT+TGG 0.539254 1_3:+53647499 Msa0125230:CDS
GGGATTGGAAGTTATGGAAG+TGG 0.539360 1_3:+53645104 Msa0125230:CDS
GGTTGGTAACCAGGAACAGT+TGG 0.539492 1_3:-53646375 None:intergenic
TTTGGATGCAGATGCAAAGT+GGG 0.539561 1_3:+53647487 Msa0125230:CDS
CTCTTCCTGAGTCTGAATTG+AGG 0.540388 1_3:+53645234 Msa0125230:CDS
GGAAGCATATCCGCATCGAC+AGG 0.540888 1_3:-53646351 None:intergenic
CCTAGATATACAGATTGGCC+TGG 0.541076 1_3:+53646315 Msa0125230:CDS
GGGTGATGGTGGTAGTAGAA+TGG 0.541287 1_3:+53644917 Msa0125230:CDS
AAACATAAATCTCTCTTCAT+CGG 0.542564 1_3:-53647986 None:intergenic
ACCTGACCTTCAACTTTGTG+AGG 0.546210 1_3:-53650396 None:intergenic
GTAGCTCACACCTCTGTACA+AGG 0.549963 1_3:-53646058 None:intergenic
GAGGATGCATGAGATATTGG+AGG 0.550479 1_3:+53645409 Msa0125230:CDS
TGAAGAAACGGAGAGAATGA+TGG 0.551109 1_3:-53644659 None:intergenic
GGCAGTGACACTCAATTCAT+GGG 0.551146 1_3:+53650462 Msa0125230:three_prime_UTR
TCACTCAAGCCTTGCTAGAG+AGG 0.551580 1_3:+53647342 Msa0125230:CDS
TTGATAAGATTCATGAGAGG+TGG 0.551714 1_3:+53645330 Msa0125230:CDS
AACCTCCTCAATTCAGACTC+AGG 0.552435 1_3:-53645239 None:intergenic
CTGATACATGGTTAAAACGC+TGG 0.556259 1_3:+53644793 Msa0125230:CDS
TTCTCTACGAAGGATTGCTA+GGG 0.556681 1_3:+53646455 Msa0125230:CDS
TCCGAAAGGAAGAACTCTGA+AGG 0.556767 1_3:-53646400 None:intergenic
GGAAGTTATGGAAGTGGTGA+TGG 0.559350 1_3:+53645110 Msa0125230:CDS
TGGTGAAGTGAGGTTTCCTT+GGG 0.559431 1_3:+53645133 Msa0125230:CDS
TGCTATTAATTTCCAACCTG+AGG 0.561229 1_3:+53650367 Msa0125230:CDS
TTCACTTCAAAATCATTCGA+AGG 0.561434 1_3:-53646153 None:intergenic
CTCTAGGATTGAATAAGTCA+AGG 0.562097 1_3:+53650641 Msa0125230:three_prime_UTR
GGCGCTGGTAATCCTTTCCC+CGG 0.562420 1_3:-53648431 None:intergenic
GAAGAACTCTGAAGGGAGGT+TGG 0.563635 1_3:-53646392 None:intergenic
TAGGTCCTAGATATACAGAT+TGG 0.563776 1_3:+53646310 Msa0125230:CDS
TTCGGAGTGAGACCGACACT+TGG 0.564308 1_3:+53646417 Msa0125230:CDS
ATCGCCCAAAACCGCCACGC+GGG 0.566037 1_3:+53644826 Msa0125230:CDS
ATGTTGCCTAATACAAGAGG+TGG 0.568407 1_3:+53645059 Msa0125230:CDS
GGAACAAATAGAGAAAGTAA+AGG 0.569961 1_3:+53650078 Msa0125230:intron
TGGATGAAGAAGTTGAAGAG+AGG 0.576446 1_3:+53645168 Msa0125230:CDS
TCTAGGATTGAATAAGTCAA+GGG 0.580496 1_3:+53650642 Msa0125230:three_prime_UTR
CAAAGCAATGCAGGATGAGG+AGG 0.581413 1_3:+53647376 Msa0125230:CDS
AGCTGAAAGAGCCCTAATGA+AGG 0.582758 1_3:+53647912 Msa0125230:CDS
GAAGTAGACAAGTTATTGGA+TGG 0.582788 1_3:+53646285 Msa0125230:CDS
CACTCAAGCCTTGCTAGAGA+GGG 0.584330 1_3:+53647343 Msa0125230:CDS
GTACAGAGGTGTGAGCTACA+AGG 0.584665 1_3:+53646062 Msa0125230:CDS
TTCATGGTTGCAGGTAGACG+TGG 0.590174 1_3:+53648225 Msa0125230:intron
GACAAGTTATTGGATGGTCT+AGG 0.590262 1_3:+53646291 Msa0125230:CDS
ATATCCGCATCGACAGGCAG+TGG 0.591204 1_3:-53646345 None:intergenic
TGGTAACCAGGAACAGTTGG+AGG 0.592101 1_3:-53646372 None:intergenic
CTTTGGATGCAGATGCAAAG+TGG 0.592246 1_3:+53647486 Msa0125230:CDS
ACCAGGCTGAAAGAAAGATA+AGG 0.592259 1_3:+53647887 Msa0125230:intron
GTGGTGATGGTGGTGAAGTG+AGG 0.598555 1_3:+53645123 Msa0125230:CDS
ATGCCTATGTGAATCGTCAA+TGG 0.599208 1_3:+53650441 Msa0125230:three_prime_UTR
TCGCCCAAAACCGCCACGCG+GGG 0.599879 1_3:+53644827 Msa0125230:CDS
CCGAAAGGAAGAACTCTGAA+GGG 0.601959 1_3:-53646399 None:intergenic
TTCCTGAGTCTGAATTGAGG+AGG 0.601987 1_3:+53645237 Msa0125230:CDS
AGCTTGATACTAGTGAGTAG+TGG 0.602358 1_3:-53644445 None:intergenic
AAGAGCCCTAATGAAGGTGG+AGG 0.602601 1_3:+53647918 Msa0125230:CDS
TCTTCGGTCTCATCATTGAA+GGG 0.605550 1_3:-53648452 None:intergenic
GAATCAGAAGTAAATTCAGA+AGG 0.606031 1_3:-53646177 None:intergenic
CATGTAGGCGGAGGATGATG+AGG 0.607642 1_3:+53650283 Msa0125230:intron
GCCTCCTTGAAACCAAGTGT+CGG 0.611476 1_3:-53646429 None:intergenic
TAATTTAAAACCCCGCGTGG+CGG 0.613765 1_3:-53644837 None:intergenic
TGAGAGAAGTAGAACAACTA+CGG 0.614641 1_3:+53647546 Msa0125230:CDS
AATGGGTGAAGTTGGCGAGT+GGG 0.618212 1_3:-53644618 None:intergenic
AGTTATGGAAGTGGTGATGG+TGG 0.618975 1_3:+53645113 Msa0125230:CDS
TGCAGCCATGATCAAACTGT+GGG 0.619304 1_3:+53646611 Msa0125230:CDS
CTGCCATTGACGATTCACAT+AGG 0.619380 1_3:-53650444 None:intergenic
GCACTTGCACTGGAAGTACC+GGG 0.621505 1_3:+53648275 Msa0125230:CDS
GAATTTACATGAATGAAGAG+TGG 0.621584 1_3:-53644579 None:intergenic
GATTGAAGAAGAAGAAATTG+TGG 0.622735 1_3:-53644682 None:intergenic
CAACCTAATGCAAAATGTGG+AGG 0.623738 1_3:-53646483 None:intergenic
AGGAGGCAACTTCTCTACGA+AGG 0.627538 1_3:+53646445 Msa0125230:CDS
AACCTAATGCAAAATGTGGA+GGG 0.630249 1_3:-53646482 None:intergenic
ATGCTGCACTTAACATGAAG+AGG 0.634551 1_3:+53645390 Msa0125230:CDS
TCCTTGGGAGAAACCAGTAG+TGG 0.634853 1_3:+53645148 Msa0125230:CDS
TACATCAGAGTTGTCAGCGG+AGG 0.635595 1_3:+53647445 Msa0125230:CDS
GACCAACCTAATGCAAAATG+TGG 0.636495 1_3:-53646486 None:intergenic
GGAATGTTGCCTAATACAAG+AGG 0.637246 1_3:+53645056 Msa0125230:CDS
TGTTTCGCAAGTTAGGATTG+CGG 0.639050 1_3:+53648004 Msa0125230:CDS
AGTGTCGGTCTCACTCCGAA+AGG 0.639614 1_3:-53646414 None:intergenic
AAGCATAAGACGAGAATCGG+TGG 0.644894 1_3:+53645284 Msa0125230:CDS
AAATGGGTGAAGTTGGCGAG+TGG 0.645078 1_3:-53644619 None:intergenic
CTGCAGCCATGATCAAACTG+TGG 0.648025 1_3:+53646610 Msa0125230:CDS
AATCGAGCTTCAACGACATG+AGG 0.650049 1_3:+53648509 Msa0125230:CDS
TTTGATAGCTCTGATGATGA+GGG 0.651437 1_3:+53644897 Msa0125230:CDS
TGTTGCCTAATACAAGAGGT+GGG 0.652697 1_3:+53645060 Msa0125230:CDS
GGTGCTGACAGAAACTTCGA+AGG 0.652731 1_3:-53646132 None:intergenic
TCTGATGATGAGGGTGATGG+TGG 0.657403 1_3:+53644906 Msa0125230:CDS
TGAAAGAGCCCTAATGAAGG+TGG 0.658133 1_3:+53647915 Msa0125230:CDS
AGCTCTGATGATGAGGGTGA+TGG 0.659433 1_3:+53644903 Msa0125230:CDS
GAAGAGTAAGACTTCTATGG+CGG 0.662513 1_3:+53645205 Msa0125230:CDS
CTAGCACTTGAAGCTGAGAG+TGG 0.663111 1_3:+53648354 Msa0125230:CDS
GCGAAAGTTGCACTCAAACG+TGG 0.665701 1_3:+53646648 Msa0125230:CDS
CATAAGACGAGAATCGGTGG+TGG 0.666864 1_3:+53645287 Msa0125230:CDS
GCACTTGAAGCTGAGAGTGG+TGG 0.667962 1_3:+53648357 Msa0125230:CDS
CTAGGATTGAATAAGTCAAG+GGG 0.670029 1_3:+53650643 Msa0125230:three_prime_UTR
GGTCTGTTAACATATGCTTG+AGG 0.672068 1_3:+53650664 Msa0125230:three_prime_UTR
CGGATGCAGAAACTGACAGG+TGG 0.683372 1_3:+53647251 Msa0125230:intron
TACAGATGATGATAACTCTG+AGG 0.690871 1_3:+53650147 Msa0125230:CDS
TGATAATTTAAAACCCCGCG+TGG 0.693389 1_3:-53644840 None:intergenic
TTGGATGCAGATGCAAAGTG+GGG 0.693666 1_3:+53647488 Msa0125230:CDS
AAAGGAAGAACTCTGAAGGG+AGG 0.696481 1_3:-53646396 None:intergenic
AATCGCCCAAAACCGCCACG+CGG 0.701184 1_3:+53644825 Msa0125230:CDS
TGAGCCACTGCCTGTCGATG+CGG 0.707365 1_3:+53646341 Msa0125230:CDS
TATTCTATACTTGTTTACCG+GGG 0.713369 1_3:+53648414 Msa0125230:CDS
TAATACATCAGAGTTGTCAG+CGG 0.714007 1_3:+53647442 Msa0125230:CDS
TCTCTACGAAGGATTGCTAG+GGG 0.724320 1_3:+53646456 Msa0125230:CDS
ACCGACACTTGGTTTCAAGG+AGG 0.731383 1_3:+53646428 Msa0125230:CDS
TTGTTGATAAGATTCATGAG+AGG 0.747036 1_3:+53645327 Msa0125230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATATTTTTTTTTATTTC+CGG + chr1_3:53647231-53647250 Msa0125230:intron 10.0%
!! TATACAGTATTTATATTAAT+TGG - chr1_3:53648620-53648639 None:intergenic 10.0%
!! ATAAATTAATTGTGAAATGT+AGG + chr1_3:53646561-53646580 Msa0125230:intron 15.0%
!! AGATATAAGTATTAAGTTAT+AGG + chr1_3:53647130-53647149 Msa0125230:intron 15.0%
!! ATTGAAAATAATGAATATCT+GGG - chr1_3:53647737-53647756 None:intergenic 15.0%
!! TATTGAAAATAATGAATATC+TGG - chr1_3:53647738-53647757 None:intergenic 15.0%
!!! ATTTACAAACTTTTACAAAA+AGG + chr1_3:53648700-53648719 Msa0125230:intron 15.0%
!! ATGTATGTTAAATATCTAAT+CGG - chr1_3:53649001-53649020 None:intergenic 15.0%
!! TACATAAAAGTTTATCAATT+TGG + chr1_3:53649016-53649035 Msa0125230:intron 15.0%
!!! AAAGATTTTCTATAACATTA+AGG - chr1_3:53649129-53649148 None:intergenic 15.0%
!! TATTTACACACAAATATAAA+AGG - chr1_3:53650256-53650275 None:intergenic 15.0%
!!! AGAAAGATAAGTGAAATTTT+TGG - chr1_3:53644736-53644755 None:intergenic 20.0%
!! TTGAGAAATTGAAGAAATTT+GGG + chr1_3:53644949-53644968 Msa0125230:CDS 20.0%
!! AATGAGAATATAAAAGAAGA+AGG + chr1_3:53644987-53645006 Msa0125230:CDS 20.0%
!!! GATATATTTTATGTAGAAGA+AGG + chr1_3:53645035-53645054 Msa0125230:CDS 20.0%
!! AACAGAATAAACAGTTATAT+AGG + chr1_3:53646097-53646116 Msa0125230:CDS 20.0%
!! ACAAAATTTATTAGTTGAAC+CGG - chr1_3:53646735-53646754 None:intergenic 20.0%
!! TATACTTAATGTCAACTTAA+TGG - chr1_3:53646898-53646917 None:intergenic 20.0%
!! AATTTCAGATATAAACTTGA+AGG - chr1_3:53647620-53647639 None:intergenic 20.0%
!! TTGAAAATAATGAATATCTG+GGG - chr1_3:53647736-53647755 None:intergenic 20.0%
!!! GTAATGTAAATTTTTCTATC+TGG - chr1_3:53648139-53648158 None:intergenic 20.0%
!! ATCAAAATGAATGTAATTCA+TGG + chr1_3:53648209-53648228 Msa0125230:intron 20.0%
!! TATTACAATTAGCATTTGAT+TGG - chr1_3:53648557-53648576 None:intergenic 20.0%
!! GTATTGAATTCAGAATAAAT+AGG - chr1_3:53648836-53648855 None:intergenic 20.0%
!! TGTATGTTAAATATCTAATC+GGG - chr1_3:53649000-53649019 None:intergenic 20.0%
!!! TGGCAAAACAATTTTTTTTT+TGG + chr1_3:53649070-53649089 Msa0125230:intron 20.0%
!! ATTGTATAACAGATTAGATT+CGG + chr1_3:53650117-53650136 Msa0125230:CDS 20.0%
!! TGTAAATATCTTATACATGT+AGG + chr1_3:53650268-53650287 Msa0125230:intron 20.0%
!! TAATTGCTTATACACTATTA+AGG + chr1_3:53650578-53650597 Msa0125230:three_prime_UTR 20.0%
!! ATGTATGTATATACATTTGT+TGG + chr1_3:53650611-53650630 Msa0125230:three_prime_UTR 20.0%
!!! TTTTCTATAAGCTAAAATGA+AGG - chr1_3:53650697-53650716 None:intergenic 20.0%
! TGGAAATTAAAGGATGATTA+TGG - chr1_3:53644562-53644581 None:intergenic 25.0%
! CATTCATGTAAATTCATCAA+TGG + chr1_3:53644587-53644606 Msa0125230:exon 25.0%
!!! TTTTGAAAATGAAGCTTTTG+TGG - chr1_3:53644707-53644726 None:intergenic 25.0%
!!! AGATAAGTGAAATTTTTGGT+GGG - chr1_3:53644732-53644751 None:intergenic 25.0%
!!! AAGATAAGTGAAATTTTTGG+TGG - chr1_3:53644733-53644752 None:intergenic 25.0%
! GAAACTCTTATGGTAAAAAA+TGG - chr1_3:53644769-53644788 None:intergenic 25.0%
!!! GTTTTAAATTATCAAGGTTC+TGG + chr1_3:53644849-53644868 Msa0125230:CDS 25.0%
! GTTGAGAAATTGAAGAAATT+TGG + chr1_3:53644948-53644967 Msa0125230:CDS 25.0%
! TTGAATATACAAGAAGCAAA+AGG - chr1_3:53645447-53645466 None:intergenic 25.0%
! AGGTATAAATGCATACAATT+CGG - chr1_3:53645541-53645560 None:intergenic 25.0%
! ATACCTCAGTGTTTAAATAT+AGG + chr1_3:53645555-53645574 Msa0125230:intron 25.0%
! ATCACAGAAATTAAGAAAGT+TGG + chr1_3:53645592-53645611 Msa0125230:intron 25.0%
! ATAAACAAACTCTATCTTGA+AGG - chr1_3:53645666-53645685 None:intergenic 25.0%
!! ATATTTTGTAGACATTTCAC+TGG + chr1_3:53645904-53645923 Msa0125230:intron 25.0%
! TACTACATTCAGAAAAAAAC+TGG + chr1_3:53646000-53646019 Msa0125230:intron 25.0%
! TGTTTATTCTGTTGTATTGA+AGG - chr1_3:53646090-53646109 None:intergenic 25.0%
! AAAAACATCGTTGGAAAAAT+TGG + chr1_3:53646206-53646225 Msa0125230:CDS 25.0%
! CAAAATTTATTAGTTGAACC+GGG - chr1_3:53646734-53646753 None:intergenic 25.0%
! AAAATCTATGCTTTAGTGAA+TGG - chr1_3:53646821-53646840 None:intergenic 25.0%
! AGTTGACATTAAGTATAAAG+AGG + chr1_3:53646901-53646920 Msa0125230:intron 25.0%
! AACACAAACAAAATATGATC+AGG + chr1_3:53647159-53647178 Msa0125230:intron 25.0%
! ACAGCTATAACACAAAATTT+AGG - chr1_3:53647664-53647683 None:intergenic 25.0%
!! AAATTTTGTGTTATAGCTGT+TGG + chr1_3:53647664-53647683 Msa0125230:intron 25.0%
! TATTATGTACACAATGTTAG+TGG + chr1_3:53647756-53647775 Msa0125230:intron 25.0%
!!! TATTCATTATTGTCGACTTT+TGG + chr1_3:53647794-53647813 Msa0125230:intron 25.0%
! AAACATAAATCTCTCTTCAT+CGG - chr1_3:53647989-53648008 None:intergenic 25.0%
!! TGACTTTTATTGAGTAATCT+TGG + chr1_3:53648645-53648664 Msa0125230:intron 25.0%
!! GACTTTTATTGAGTAATCTT+GGG + chr1_3:53648646-53648665 Msa0125230:intron 25.0%
! TGTGTTAAGATATCTGATAA+AGG - chr1_3:53648970-53648989 None:intergenic 25.0%
! TCAAGATTACTCTTAGAATT+TGG + chr1_3:53649199-53649218 Msa0125230:intron 25.0%
! CAAGATTACTCTTAGAATTT+GGG + chr1_3:53649200-53649219 Msa0125230:intron 25.0%
! GTGTAGTGTTTATAAAGATT+GGG - chr1_3:53649273-53649292 None:intergenic 25.0%
! TGTGTAGTGTTTATAAAGAT+TGG - chr1_3:53649274-53649293 None:intergenic 25.0%
! GTGTAGTGTTTATAAAGATT+GGG - chr1_3:53649273-53649292 None:intergenic 25.0%
!!! TATAGTGGGTAAATTGATAA+AGG + chr1_3:53649744-53649763 Msa0125230:intron 25.0%
! ATCAATAGTACGTACTATTT+CGG - chr1_3:53649965-53649984 None:intergenic 25.0%
! CATATAATATACAGCTTAGA+TGG - chr1_3:53650012-53650031 None:intergenic 25.0%
! CATCTAAGCTGTATATTATA+TGG + chr1_3:53650010-53650029 Msa0125230:intron 25.0%
! TGTATATTATATGGAAACCT+AGG + chr1_3:53650019-53650038 Msa0125230:intron 25.0%
! AAATATCTTATACATGTAGG+CGG + chr1_3:53650271-53650290 Msa0125230:intron 25.0%
GAAATTGAAGATGAAGATTC+TGG - chr1_3:53644512-53644531 None:intergenic 30.0%
TAAAGGATGATTATGGTGTT+GGG - chr1_3:53644555-53644574 None:intergenic 30.0%
TTAAAGGATGATTATGGTGT+TGG - chr1_3:53644556-53644575 None:intergenic 30.0%
GAATGAAGAGTGGAAATTAA+AGG - chr1_3:53644572-53644591 None:intergenic 30.0%
GAATTTACATGAATGAAGAG+TGG - chr1_3:53644582-53644601 None:intergenic 30.0%
AAGAAATTGTGGTGAAGAAA+CGG - chr1_3:53644674-53644693 None:intergenic 30.0%
GATTGAAGAAGAAGAAATTG+TGG - chr1_3:53644685-53644704 None:intergenic 30.0%
!! AATTATCAAGGTTCTGGAAA+TGG + chr1_3:53644855-53644874 Msa0125230:CDS 30.0%
!! ATTATCAAGGTTCTGGAAAT+GGG + chr1_3:53644856-53644875 Msa0125230:CDS 30.0%
AAGAAGGAGTGATAGAAAAA+GGG + chr1_3:53645003-53645022 Msa0125230:CDS 30.0%
! TTGTTGATAAGATTCATGAG+AGG + chr1_3:53645327-53645346 Msa0125230:CDS 30.0%
ATTGTTAGGCTTAAGTTTGA+AGG + chr1_3:53645365-53645384 Msa0125230:CDS 30.0%
GGTATAAATGCATACAATTC+GGG - chr1_3:53645540-53645559 None:intergenic 30.0%
TCCATCGTAGTATTTATTGT+TGG + chr1_3:53645689-53645708 Msa0125230:intron 30.0%
ACCAACAATAAATACTACGA+TGG - chr1_3:53645693-53645712 None:intergenic 30.0%
!! GTAGTATTTATTGTTGGTTC+AGG + chr1_3:53645695-53645714 Msa0125230:intron 30.0%
TGCAGTTGAAAATTCAGATT+AGG + chr1_3:53645743-53645762 Msa0125230:intron 30.0%
! TCAAGAGGGTCTTATATTTA+GGG + chr1_3:53645791-53645810 Msa0125230:intron 30.0%
AATTGTGCAATCTTCTATGA+TGG + chr1_3:53645872-53645891 Msa0125230:intron 30.0%
TACATTCAGAAAAAAACTGG+TGG + chr1_3:53646003-53646022 Msa0125230:intron 30.0%
TTCACTTCAAAATCATTCGA+AGG - chr1_3:53646156-53646175 None:intergenic 30.0%
GAATCAGAAGTAAATTCAGA+AGG - chr1_3:53646180-53646199 None:intergenic 30.0%
! TCATCTTCATAACTGAGTTT+TGG - chr1_3:53646267-53646286 None:intergenic 30.0%
AGATGAAGTAGACAAGTTAT+TGG + chr1_3:53646281-53646300 Msa0125230:CDS 30.0%
! TGTGTACATTTTCAAACAGA+AGG - chr1_3:53646844-53646863 None:intergenic 30.0%
TACAAACTAACATAGTGTAC+TGG - chr1_3:53646933-53646952 None:intergenic 30.0%
TTTGTAATCCATAAGTGCTA+GGG + chr1_3:53646947-53646966 Msa0125230:intron 30.0%
ACATTGTGATAAACTTAGTG+TGG + chr1_3:53647037-53647056 Msa0125230:intron 30.0%
!! AGATAGTTTTGCAATTAGCT+TGG + chr1_3:53647081-53647100 Msa0125230:intron 30.0%
AACTCTGATGTATTAATAGC+TGG - chr1_3:53647437-53647456 None:intergenic 30.0%
TTCTAACTTTCTAACGATGT+TGG - chr1_3:53647576-53647595 None:intergenic 30.0%
!! TTTAGGCTTGTTGGTAATTA+GGG - chr1_3:53647647-53647666 None:intergenic 30.0%
!! ATTTAGGCTTGTTGGTAATT+AGG - chr1_3:53647648-53647667 None:intergenic 30.0%
AACACAAAATTTAGGCTTGT+TGG - chr1_3:53647656-53647675 None:intergenic 30.0%
TTATAGCTGTTGGACATATT+TGG + chr1_3:53647674-53647693 Msa0125230:intron 30.0%
TTGGTACTTAATTTCACACT+AGG + chr1_3:53647813-53647832 Msa0125230:intron 30.0%
CAATCACGTAAATTCTAAAC+TGG - chr1_3:53647847-53647866 None:intergenic 30.0%
AGATTTATGTTTCGCAAGTT+AGG + chr1_3:53647997-53648016 Msa0125230:CDS 30.0%
ATGAAAGCTTTCTTACTTCT+TGG + chr1_3:53648027-53648046 Msa0125230:CDS 30.0%
! ATTCATGATAATGATATGCG+AGG + chr1_3:53648170-53648189 Msa0125230:intron 30.0%
! TTCATGATAATGATATGCGA+GGG + chr1_3:53648171-53648190 Msa0125230:intron 30.0%
ACTGGTCAAGATAATTGTTA+AGG + chr1_3:53648299-53648318 Msa0125230:CDS 30.0%
TCAGTTGACAAAGTTTCAAA+AGG + chr1_3:53648390-53648409 Msa0125230:CDS 30.0%
TACAAAAAGGAATATTGTGC+TGG + chr1_3:53648713-53648732 Msa0125230:intron 30.0%
TGATAAAGGAACAATACAGA+AGG - chr1_3:53648956-53648975 None:intergenic 30.0%
CCAGAAAAAATGAAAGAATG+GGG - chr1_3:53649053-53649072 None:intergenic 30.0%
GCCAGAAAAAATGAAAGAAT+GGG - chr1_3:53649054-53649073 None:intergenic 30.0%
TGCCAGAAAAAATGAAAGAA+TGG - chr1_3:53649055-53649074 None:intergenic 30.0%
CTAAATCAACCTTAGAAAAC+CGG + chr1_3:53649229-53649248 Msa0125230:intron 30.0%
TAGGACAGATTCTTAGAATT+TGG + chr1_3:53649508-53649527 Msa0125230:intron 30.0%
AGGACAGATTCTTAGAATTT+GGG + chr1_3:53649509-53649528 Msa0125230:intron 30.0%
CGTGTAGTGTTTATAAAGAT+TGG - chr1_3:53649583-53649602 None:intergenic 30.0%
ATCTTTATAAACACTACACG+TGG + chr1_3:53649583-53649602 Msa0125230:intron 30.0%
TCAATTTACCCACTATATCT+TGG - chr1_3:53649741-53649760 None:intergenic 30.0%
ACATATGCACATTTACAAGA+TGG - chr1_3:53649817-53649836 None:intergenic 30.0%
TTGTCAATAAAATGAGGCAA+AGG - chr1_3:53649886-53649905 None:intergenic 30.0%
TTCAACTTTGCAAAGTAAAG+TGG + chr1_3:53649927-53649946 Msa0125230:CDS 30.0%
CTATTTGTTCCTGTGAAAAT+TGG - chr1_3:53650069-53650088 None:intergenic 30.0%
GGAACAAATAGAGAAAGTAA+AGG + chr1_3:53650078-53650097 Msa0125230:intron 30.0%
ACAAATAGAGAAAGTAAAGG+AGG + chr1_3:53650081-53650100 Msa0125230:CDS 30.0%
ATTGAGCATGAACTTATCAA+TGG - chr1_3:53650533-53650552 None:intergenic 30.0%
! ATTTGTTGGTTAAGTTCTCT+AGG + chr1_3:53650625-53650644 Msa0125230:three_prime_UTR 30.0%
! TCTAGGATTGAATAAGTCAA+GGG + chr1_3:53650642-53650661 Msa0125230:three_prime_UTR 30.0%
TTAACATATGCTTGAGGAAT+AGG + chr1_3:53650670-53650689 Msa0125230:three_prime_UTR 30.0%
TACTCACTAGTATCAAGCTT+TGG + chr1_3:53644449-53644468 Msa0125230:five_prime_UTR 35.0%
! AGTTAGGAGAAGTGTGAAAT+GGG - chr1_3:53644638-53644657 None:intergenic 35.0%
! AAGTTAGGAGAAGTGTGAAA+TGG - chr1_3:53644639-53644658 None:intergenic 35.0%
TATCAGTGCAGAAACTCTTA+TGG - chr1_3:53644779-53644798 None:intergenic 35.0%
!!! TTTTGATAGCTCTGATGATG+AGG + chr1_3:53644896-53644915 Msa0125230:CDS 35.0%
!! TTTGATAGCTCTGATGATGA+GGG + chr1_3:53644897-53644916 Msa0125230:CDS 35.0%
GAAGAAGGAGTGATAGAAAA+AGG + chr1_3:53645002-53645021 Msa0125230:CDS 35.0%
GAAGAAGAGTAAGACTTCTA+TGG + chr1_3:53645202-53645221 Msa0125230:CDS 35.0%
! AAGAAGCATAAGACGAGAAT+CGG + chr1_3:53645281-53645300 Msa0125230:CDS 35.0%
TTGATAAGATTCATGAGAGG+TGG + chr1_3:53645330-53645349 Msa0125230:CDS 35.0%
TTGAAAAACCAGTGCAACTT+AGG + chr1_3:53645488-53645507 Msa0125230:intron 35.0%
TGAAAAACCAGTGCAACTTA+GGG + chr1_3:53645489-53645508 Msa0125230:intron 35.0%
TAAATGCATACAATTCGGGT+TGG - chr1_3:53645536-53645555 None:intergenic 35.0%
GGTCCTATATTTAAACACTG+AGG - chr1_3:53645561-53645580 None:intergenic 35.0%
TTTCTGTGATTTAGTCGACA+AGG - chr1_3:53645582-53645601 None:intergenic 35.0%
! CTCAAGAGGGTCTTATATTT+AGG + chr1_3:53645790-53645809 Msa0125230:intron 35.0%
! GGTCTTATATTTAGGGATGA+AGG + chr1_3:53645798-53645817 Msa0125230:intron 35.0%
ACAATTACGCATCACTACAT+TGG - chr1_3:53645858-53645877 None:intergenic 35.0%
! TTATTGATAGTCAAGGATGC+AGG - chr1_3:53645955-53645974 None:intergenic 35.0%
TCCTTGACTATCAATAACTG+TGG + chr1_3:53645958-53645977 Msa0125230:intron 35.0%
!! TTCTGAGACAAAAACATCGT+TGG + chr1_3:53646197-53646216 Msa0125230:CDS 35.0%
GAAGTAGACAAGTTATTGGA+TGG + chr1_3:53646285-53646304 Msa0125230:CDS 35.0%
TAGGTCCTAGATATACAGAT+TGG + chr1_3:53646310-53646329 Msa0125230:CDS 35.0%
AACCTAATGCAAAATGTGGA+GGG - chr1_3:53646485-53646504 None:intergenic 35.0%
! TTTTTCCCACAGTTTGATCA+TGG - chr1_3:53646619-53646638 None:intergenic 35.0%
!! TTGCATCGTTTGCTATATGT+AGG + chr1_3:53646869-53646888 Msa0125230:intron 35.0%
GTTTGTAATCCATAAGTGCT+AGG + chr1_3:53646946-53646965 Msa0125230:intron 35.0%
ATCAACAAATCCTCACATAG+TGG - chr1_3:53647212-53647231 None:intergenic 35.0%
CTCCAGAAATAAAGACTTCT+TGG + chr1_3:53647283-53647302 Msa0125230:CDS 35.0%
! GACCAAGAAGTCTTTATTTC+TGG - chr1_3:53647288-53647307 None:intergenic 35.0%
!! ACTTCTTGGTCTTTTATCGA+GGG + chr1_3:53647297-53647316 Msa0125230:CDS 35.0%
TAATACATCAGAGTTGTCAG+CGG + chr1_3:53647442-53647461 Msa0125230:CDS 35.0%
TGAGAGAAGTAGAACAACTA+CGG + chr1_3:53647546-53647565 Msa0125230:CDS 35.0%
GTACACAATGTTAGTGGTAT+CGG + chr1_3:53647762-53647781 Msa0125230:intron 35.0%
! CTTCATCGGTTATACTTTCA+GGG - chr1_3:53647975-53647994 None:intergenic 35.0%
! TCTTCATCGGTTATACTTTC+AGG - chr1_3:53647976-53647995 None:intergenic 35.0%
TGAATGTAATTCATGGTTGC+AGG + chr1_3:53648216-53648235 Msa0125230:intron 35.0%
CTCTTTGTCAAGAGATTCTT+CGG - chr1_3:53648471-53648490 None:intergenic 35.0%
GAATCTCTTGACAAAGAGAA+AGG + chr1_3:53648473-53648492 Msa0125230:CDS 35.0%
TCGAATGCAACAAATTGAAG+TGG - chr1_3:53648584-53648603 None:intergenic 35.0%
TGTTGCATTCGAATAGAAAC+TGG + chr1_3:53648592-53648611 Msa0125230:intron 35.0%
TATCAAGTGGTTAATTGGGT+GGG - chr1_3:53648793-53648812 None:intergenic 35.0%
TTATCAAGTGGTTAATTGGG+TGG - chr1_3:53648794-53648813 None:intergenic 35.0%
GGGTTATCAAGTGGTTAATT+GGG - chr1_3:53648797-53648816 None:intergenic 35.0%
TGGGTTATCAAGTGGTTAAT+TGG - chr1_3:53648798-53648817 None:intergenic 35.0%
CAGAATAAATAGGAAAGCGA+AGG - chr1_3:53648826-53648845 None:intergenic 35.0%
AAAGGAACAATACAGAAGGA+GGG - chr1_3:53648952-53648971 None:intergenic 35.0%
TAAAGGAACAATACAGAAGG+AGG - chr1_3:53648953-53648972 None:intergenic 35.0%
GTTAAATATCTAATCGGGAG+TGG - chr1_3:53648995-53649014 None:intergenic 35.0%
!! ATGAAAGAATGGGGAGTATT+AGG - chr1_3:53649044-53649063 None:intergenic 35.0%
!!! CCCCATTCTTTCATTTTTTC+TGG + chr1_3:53649050-53649069 Msa0125230:intron 35.0%
!! TTTGGCTTAGTTTGTTGTGT+TGG + chr1_3:53649088-53649107 Msa0125230:intron 35.0%
!! TTGGCTTAGTTTGTTGTGTT+GGG + chr1_3:53649089-53649108 Msa0125230:intron 35.0%
ACAGACCATATGATATGTCT+GGG + chr1_3:53649291-53649310 Msa0125230:intron 35.0%
TTCATTGTGTTGGGTGTTAA+GGG - chr1_3:53649337-53649356 None:intergenic 35.0%
TTCAACACCTTCATTGTGTT+GGG - chr1_3:53649346-53649365 None:intergenic 35.0%
CAATGAAGGCAACTCAAATT+AGG + chr1_3:53649668-53649687 Msa0125230:intron 35.0%
! TATATCTTGGTAGTCCTTGT+TGG - chr1_3:53649728-53649747 None:intergenic 35.0%
AAGGACTACCAAGATATAGT+GGG + chr1_3:53649730-53649749 Msa0125230:intron 35.0%
! GCCTCATTTTATTGACAAAC+AGG + chr1_3:53649888-53649907 Msa0125230:intron 35.0%
GCCTGTTTGTCAATAAAATG+AGG - chr1_3:53649892-53649911 None:intergenic 35.0%
AAACAAAGATCAGGAAACCT+AGG - chr1_3:53650039-53650058 None:intergenic 35.0%
! TTTCCTGATCTTTGTTTGTC+TGG + chr1_3:53650042-53650061 Msa0125230:intron 35.0%
ATAGAGAAAGTAAAGGAGGA+AGG + chr1_3:53650085-53650104 Msa0125230:CDS 35.0%
TACAGATGATGATAACTCTG+AGG + chr1_3:53650147-53650166 Msa0125230:CDS 35.0%
TGCTATTAATTTCCAACCTG+AGG + chr1_3:53650367-53650386 Msa0125230:CDS 35.0%
AATTTGCCTCACAAAGTTGA+AGG + chr1_3:53650390-53650409 Msa0125230:CDS 35.0%
!! CTCTAGGATTGAATAAGTCA+AGG + chr1_3:53650641-53650660 Msa0125230:three_prime_UTR 35.0%
CTAGGATTGAATAAGTCAAG+GGG + chr1_3:53650643-53650662 Msa0125230:three_prime_UTR 35.0%
!! GTGAGTAGTGGATAGAAAAC+TGG - chr1_3:53644436-53644455 None:intergenic 40.0%
AGCTTGATACTAGTGAGTAG+TGG - chr1_3:53644448-53644467 None:intergenic 40.0%
!!! CTCTGTTCTGTTCTGGTTTT+TGG - chr1_3:53644480-53644499 None:intergenic 40.0%
GTTCTTACTCTGTTCTGTTC+TGG - chr1_3:53644487-53644506 None:intergenic 40.0%
AAGTGTGAAATGGGTGAAGT+TGG - chr1_3:53644629-53644648 None:intergenic 40.0%
TGAAGAAACGGAGAGAATGA+TGG - chr1_3:53644662-53644681 None:intergenic 40.0%
! AGAGTTTCTGCACTGATACA+TGG + chr1_3:53644781-53644800 Msa0125230:CDS 40.0%
CTGATACATGGTTAAAACGC+TGG + chr1_3:53644793-53644812 Msa0125230:CDS 40.0%
! TGATAATTTAAAACCCCGCG+TGG - chr1_3:53644843-53644862 None:intergenic 40.0%
!!! CGCGGGGTTTTAAATTATCA+AGG + chr1_3:53644843-53644862 Msa0125230:CDS 40.0%
AGTGATAGAAAAAGGGTCAG+TGG + chr1_3:53645010-53645029 Msa0125230:CDS 40.0%
GGAATGTTGCCTAATACAAG+AGG + chr1_3:53645056-53645075 Msa0125230:CDS 40.0%
ATGTTGCCTAATACAAGAGG+TGG + chr1_3:53645059-53645078 Msa0125230:CDS 40.0%
TGTTGCCTAATACAAGAGGT+GGG + chr1_3:53645060-53645079 Msa0125230:CDS 40.0%
GAAAACCCACCTCTTGTATT+AGG - chr1_3:53645068-53645087 None:intergenic 40.0%
CCATAACTTCCAATCCCAAA+TGG - chr1_3:53645101-53645120 None:intergenic 40.0%
! CCATTTGGGATTGGAAGTTA+TGG + chr1_3:53645098-53645117 Msa0125230:CDS 40.0%
TCAACTTCTTCATCCACTAC+TGG - chr1_3:53645164-53645183 None:intergenic 40.0%
TGGATGAAGAAGTTGAAGAG+AGG + chr1_3:53645168-53645187 Msa0125230:CDS 40.0%
GAAGAGTAAGACTTCTATGG+CGG + chr1_3:53645205-53645224 Msa0125230:CDS 40.0%
!! GGAAGACTTCTGAGATTGTT+AGG + chr1_3:53645351-53645370 Msa0125230:CDS 40.0%
ATGCTGCACTTAACATGAAG+AGG + chr1_3:53645390-53645409 Msa0125230:CDS 40.0%
GAAGAGGATGCATGAGATAT+TGG + chr1_3:53645406-53645425 Msa0125230:CDS 40.0%
TGCATGAGATATTGGAGGTT+TGG + chr1_3:53645414-53645433 Msa0125230:intron 40.0%
GAAAAACCAGTGCAACTTAG+GGG + chr1_3:53645490-53645509 Msa0125230:intron 40.0%
AGAGACAGACATTTCTCAAG+AGG + chr1_3:53645776-53645795 Msa0125230:intron 40.0%
GAGACAGACATTTCTCAAGA+GGG + chr1_3:53645777-53645796 Msa0125230:intron 40.0%
TACGCATCACTACATTGGAT+TGG - chr1_3:53645853-53645872 None:intergenic 40.0%
! GCCACAGTTATTGATAGTCA+AGG - chr1_3:53645962-53645981 None:intergenic 40.0%
TCAGAAAAAAACTGGTGGTC+TGG + chr1_3:53646008-53646027 Msa0125230:intron 40.0%
AACTCTGTTTCCTTGTACAG+AGG + chr1_3:53646048-53646067 Msa0125230:CDS 40.0%
GACAAGTTATTGGATGGTCT+AGG + chr1_3:53646291-53646310 Msa0125230:CDS 40.0%
TTCTCTACGAAGGATTGCTA+GGG + chr1_3:53646455-53646474 Msa0125230:CDS 40.0%
CAACCTAATGCAAAATGTGG+AGG - chr1_3:53646486-53646505 None:intergenic 40.0%
! CTCCACATTTTGCATTAGGT+TGG + chr1_3:53646484-53646503 Msa0125230:intron 40.0%
GACCAACCTAATGCAAAATG+TGG - chr1_3:53646489-53646508 None:intergenic 40.0%
GGTGATTTATCATGTTCTCC+CGG + chr1_3:53646713-53646732 Msa0125230:intron 40.0%
CTTTAGTGAATGGCATACCA+AGG - chr1_3:53646811-53646830 None:intergenic 40.0%
!! GACTTCTTGGTCTTTTATCG+AGG + chr1_3:53647296-53647315 Msa0125230:CDS 40.0%
TTTGGATGCAGATGCAAAGT+GGG + chr1_3:53647487-53647506 Msa0125230:CDS 40.0%
ATTTACGTGATTGTGATCCC+TGG + chr1_3:53647854-53647873 Msa0125230:intron 40.0%
ACCAGGCTGAAAGAAAGATA+AGG + chr1_3:53647887-53647906 Msa0125230:intron 40.0%
TCCTTATCTTTCTTTCAGCC+TGG - chr1_3:53647891-53647910 None:intergenic 40.0%
TGTTTCGCAAGTTAGGATTG+CGG + chr1_3:53648004-53648023 Msa0125230:CDS 40.0%
TGTGGTGAAGTGAATCAAAG+TGG - chr1_3:53648093-53648112 None:intergenic 40.0%
ATTCACTTCACCACATGCTA+AGG + chr1_3:53648098-53648117 Msa0125230:intron 40.0%
TTCACTTCACCACATGCTAA+GGG + chr1_3:53648099-53648118 Msa0125230:intron 40.0%
CAATTATCTTGACCAGTTCC+CGG - chr1_3:53648296-53648315 None:intergenic 40.0%
TCTTCGGTCTCATCATTGAA+GGG - chr1_3:53648455-53648474 None:intergenic 40.0%
TTCTTCGGTCTCATCATTGA+AGG - chr1_3:53648456-53648475 None:intergenic 40.0%
CTTGACAAAGAGAAAGGCTT+TGG + chr1_3:53648479-53648498 Msa0125230:CDS 40.0%
AGGAATATTGTGCTGGAACT+AGG + chr1_3:53648720-53648739 Msa0125230:intron 40.0%
AAGGAACAATACAGAAGGAG+GGG - chr1_3:53648951-53648970 None:intergenic 40.0%
CACAGACCATATGATATGTC+TGG + chr1_3:53649290-53649309 Msa0125230:intron 40.0%
CATTGCCCAGACATATCATA+TGG - chr1_3:53649299-53649318 None:intergenic 40.0%
TCATTGTGTTGGGTGTTAAG+GGG - chr1_3:53649336-53649355 None:intergenic 40.0%
CTTCATTGTGTTGGGTGTTA+AGG - chr1_3:53649338-53649357 None:intergenic 40.0%
CTTAACACCCAACACAATGA+AGG + chr1_3:53649336-53649355 Msa0125230:intron 40.0%
CTTCAACACCTTCATTGTGT+TGG - chr1_3:53649347-53649366 None:intergenic 40.0%
!! CAACACAATGAAGGTGTTGA+AGG + chr1_3:53649345-53649364 Msa0125230:intron 40.0%
CAACCCAAATGCCACAATTA+GGG + chr1_3:53649380-53649399 Msa0125230:intron 40.0%
AACCCAAATGCCACAATTAG+GGG + chr1_3:53649381-53649400 Msa0125230:intron 40.0%
TCTGTCCTAGATCTGTTGTT+GGG - chr1_3:53649497-53649516 None:intergenic 40.0%
ATCTGTCCTAGATCTGTTGT+TGG - chr1_3:53649498-53649517 None:intergenic 40.0%
CAGATTCGTAAGGTTGAGTT+AGG - chr1_3:53649540-53649559 None:intergenic 40.0%
CTAACTCAACCTTACGAATC+TGG + chr1_3:53649538-53649557 Msa0125230:intron 40.0%
ATAAACACTACACGTGGTCT+AGG + chr1_3:53649589-53649608 Msa0125230:intron 40.0%
CTTCGTTGTGTTGGGTTTAA+GGG - chr1_3:53649635-53649654 None:intergenic 40.0%
CAACTCAAATTAGGCAGCTA+GGG + chr1_3:53649677-53649696 Msa0125230:intron 40.0%
AACTCAAATTAGGCAGCTAG+GGG + chr1_3:53649678-53649697 Msa0125230:intron 40.0%
CAAGGACTACCAAGATATAG+TGG + chr1_3:53649729-53649748 Msa0125230:intron 40.0%
! TTGTCTGGACCAATTTTCAC+AGG + chr1_3:53650057-53650076 Msa0125230:intron 40.0%
TATCTTATACATGTAGGCGG+AGG + chr1_3:53650274-53650293 Msa0125230:intron 40.0%
ATGCCTATGTGAATCGTCAA+TGG + chr1_3:53650441-53650460 Msa0125230:three_prime_UTR 40.0%
GGTCTGTTAACATATGCTTG+AGG + chr1_3:53650664-53650683 Msa0125230:three_prime_UTR 40.0%
! CGGAGAGAATGATGGAAGTT+AGG - chr1_3:53644654-53644673 None:intergenic 45.0%
! TAATTTAAAACCCCGCGTGG+CGG - chr1_3:53644840-53644859 None:intergenic 45.0%
GATAGAAAAAGGGTCAGTGG+AGG + chr1_3:53645013-53645032 Msa0125230:CDS 45.0%
! TTTTCGCCGGAATCACCATT+TGG + chr1_3:53645083-53645102 Msa0125230:CDS 45.0%
TTTCGCCGGAATCACCATTT+GGG + chr1_3:53645084-53645103 Msa0125230:CDS 45.0%
CCAATCCCAAATGGTGATTC+CGG - chr1_3:53645092-53645111 None:intergenic 45.0%
GGGATTGGAAGTTATGGAAG+TGG + chr1_3:53645104-53645123 Msa0125230:CDS 45.0%
GGAAGTTATGGAAGTGGTGA+TGG + chr1_3:53645110-53645129 Msa0125230:CDS 45.0%
!! AGTTATGGAAGTGGTGATGG+TGG + chr1_3:53645113-53645132 Msa0125230:CDS 45.0%
TGGTGAAGTGAGGTTTCCTT+GGG + chr1_3:53645133-53645152 Msa0125230:CDS 45.0%
TTGAAGAGAGGACGAATTCG+CGG + chr1_3:53645180-53645199 Msa0125230:CDS 45.0%
CTCTTCCTGAGTCTGAATTG+AGG + chr1_3:53645234-53645253 Msa0125230:CDS 45.0%
TTCCTGAGTCTGAATTGAGG+AGG + chr1_3:53645237-53645256 Msa0125230:CDS 45.0%
AACCTCCTCAATTCAGACTC+AGG - chr1_3:53645242-53645261 None:intergenic 45.0%
AAGCATAAGACGAGAATCGG+TGG + chr1_3:53645284-53645303 Msa0125230:CDS 45.0%
GAGGATGCATGAGATATTGG+AGG + chr1_3:53645409-53645428 Msa0125230:CDS 45.0%
GGTTCAGGCGTATGTTTGTA+AGG + chr1_3:53645710-53645729 Msa0125230:intron 45.0%
AAACTGGTGGTCTGGTGATT+TGG + chr1_3:53646016-53646035 Msa0125230:CDS 45.0%
CCAGGCCAATCTGTATATCT+AGG - chr1_3:53646318-53646337 None:intergenic 45.0%
! CCTAGATATACAGATTGGCC+TGG + chr1_3:53646315-53646334 Msa0125230:CDS 45.0%
! AAAGGAAGAACTCTGAAGGG+AGG - chr1_3:53646399-53646418 None:intergenic 45.0%
CCGAAAGGAAGAACTCTGAA+GGG - chr1_3:53646402-53646421 None:intergenic 45.0%
CCCTTCAGAGTTCTTCCTTT+CGG + chr1_3:53646399-53646418 Msa0125230:CDS 45.0%
TCCGAAAGGAAGAACTCTGA+AGG - chr1_3:53646403-53646422 None:intergenic 45.0%
CTTCTCTACGAAGGATTGCT+AGG + chr1_3:53646454-53646473 Msa0125230:CDS 45.0%
TCTCTACGAAGGATTGCTAG+GGG + chr1_3:53646456-53646475 Msa0125230:CDS 45.0%
! CTCCCTCCACATTTTGCATT+AGG + chr1_3:53646480-53646499 Msa0125230:CDS 45.0%
GGTAGAAACAAGCAGCTTCA+AGG + chr1_3:53646582-53646601 Msa0125230:intron 45.0%
TGCAGCCATGATCAAACTGT+GGG + chr1_3:53646611-53646630 Msa0125230:CDS 45.0%
GCTAACTACCAGTGAGAGAA+TGG + chr1_3:53646677-53646696 Msa0125230:CDS 45.0%
GAGAATGGCAGAAGAGATCA+AGG + chr1_3:53646692-53646711 Msa0125230:CDS 45.0%
CTTCACTGTTCATGCATCCT+TGG + chr1_3:53646791-53646810 Msa0125230:intron 45.0%
TGTAAGTGCCCTAGCACTTA+TGG - chr1_3:53646958-53646977 None:intergenic 45.0%
!! TGCAATTAGCTTGGTGCTGA+TGG + chr1_3:53647090-53647109 Msa0125230:intron 45.0%
CTGTACTACACCACTATGTG+AGG + chr1_3:53647199-53647218 Msa0125230:intron 45.0%
CATTCTTTCCCTCTCTAGCA+AGG - chr1_3:53647354-53647373 None:intergenic 45.0%
CTTGCTAGAGAGGGAAAGAA+TGG + chr1_3:53647352-53647371 Msa0125230:CDS 45.0%
AAGAATGGCCAAAGCAATGC+AGG + chr1_3:53647367-53647386 Msa0125230:CDS 45.0%
CTTTGGATGCAGATGCAAAG+TGG + chr1_3:53647486-53647505 Msa0125230:CDS 45.0%
TTGGATGCAGATGCAAAGTG+GGG + chr1_3:53647488-53647507 Msa0125230:CDS 45.0%
TGCAAAGTGGGGAAAGACAT+TGG + chr1_3:53647499-53647518 Msa0125230:CDS 45.0%
! CACAATGTTAGTGGTATCGG+AGG + chr1_3:53647765-53647784 Msa0125230:intron 45.0%
! TCCCTGGATTTTTGCTTACC+AGG + chr1_3:53647870-53647889 Msa0125230:intron 45.0%
GCCTGGTAAGCAAAAATCCA+GGG - chr1_3:53647874-53647893 None:intergenic 45.0%
AGCCTGGTAAGCAAAAATCC+AGG - chr1_3:53647875-53647894 None:intergenic 45.0%
AGCTGAAAGAGCCCTAATGA+AGG + chr1_3:53647912-53647931 Msa0125230:CDS 45.0%
TGAAAGAGCCCTAATGAAGG+TGG + chr1_3:53647915-53647934 Msa0125230:CDS 45.0%
AGACACCTCCACCTTCATTA+GGG - chr1_3:53647926-53647945 None:intergenic 45.0%
AAGACACCTCCACCTTCATT+AGG - chr1_3:53647927-53647946 None:intergenic 45.0%
TTCATCACACCCTTAGCATG+TGG - chr1_3:53648111-53648130 None:intergenic 45.0%
!! ATGCGAGGGTACTTTAGTTG+TGG + chr1_3:53648185-53648204 Msa0125230:intron 45.0%
! GGTAGACGTGGAGTTTTTGA+CGG + chr1_3:53648237-53648256 Msa0125230:intron 45.0%
TCGAAAACATGCACTTGCAC+TGG + chr1_3:53648265-53648284 Msa0125230:CDS 45.0%
AATCGAGCTTCAACGACATG+AGG + chr1_3:53648509-53648528 Msa0125230:CDS 45.0%
TGCTGGAACTAGGAATTGCA+AGG + chr1_3:53648730-53648749 Msa0125230:intron 45.0%
! CTACCAAGTCTTTGAGAGCT+TGG + chr1_3:53648761-53648780 Msa0125230:intron 45.0%
GAACCAAGCTCTCAAAGACT+TGG - chr1_3:53648767-53648786 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTCTA+AGG - chr1_3:53649241-53649260 None:intergenic 45.0%
!! CCTTAGAAAACCGGCTTGTA+AGG + chr1_3:53649238-53649257 Msa0125230:intron 45.0%
!! AAAACCGGCTTGTAAGGTGA+GGG + chr1_3:53649244-53649263 Msa0125230:intron 45.0%
! GGTGTTGAAGGTTGCAATGA+TGG + chr1_3:53649357-53649376 Msa0125230:intron 45.0%
GCAACCCAAATGCCACAATT+AGG + chr1_3:53649379-53649398 Msa0125230:intron 45.0%
ACCCAAATGCCACAATTAGG+GGG + chr1_3:53649382-53649401 Msa0125230:intron 45.0%
TCATTGGGTCCTAAGTGTGA+GGG - chr1_3:53649448-53649467 None:intergenic 45.0%
ACAAGCCCAACAACAGATCT+AGG + chr1_3:53649489-53649508 Msa0125230:intron 45.0%
CCTTACAAGCCAGATTCGTA+AGG - chr1_3:53649550-53649569 None:intergenic 45.0%
! CCTTACGAATCTGGCTTGTA+AGG + chr1_3:53649547-53649566 Msa0125230:intron 45.0%
! GAATCTGGCTTGTAAGGTGA+GGG + chr1_3:53649553-53649572 Msa0125230:intron 45.0%
GTTGTGTTGGGTTTAAGGGA+TGG - chr1_3:53649631-53649650 None:intergenic 45.0%
CCTTCGTTGTGTTGGGTTTA+AGG - chr1_3:53649636-53649655 None:intergenic 45.0%
CCTTAAACCCAACACAACGA+AGG + chr1_3:53649633-53649652 Msa0125230:intron 45.0%
TCCAACACCTTCGTTGTGTT+GGG - chr1_3:53649643-53649662 None:intergenic 45.0%
GCAACTCAAATTAGGCAGCT+AGG + chr1_3:53649676-53649695 Msa0125230:intron 45.0%
TGGAAATTCCGCCTTCATTG+CGG - chr1_3:53649708-53649727 None:intergenic 45.0%
TGAAGGCGGAATTTCCAACA+AGG + chr1_3:53649711-53649730 Msa0125230:intron 45.0%
GGTCCAGACAAACAAAGATC+AGG - chr1_3:53650048-53650067 None:intergenic 45.0%
CTTTGTGAGGCAAATTCCTC+AGG - chr1_3:53650386-53650405 None:intergenic 45.0%
ACCTGACCTTCAACTTTGTG+AGG - chr1_3:53650399-53650418 None:intergenic 45.0%
TGACGATTCACATAGGCATC+AGG - chr1_3:53650440-53650459 None:intergenic 45.0%
CTGCCATTGACGATTCACAT+AGG - chr1_3:53650447-53650466 None:intergenic 45.0%
TGGCAGTGACACTCAATTCA+TGG + chr1_3:53650461-53650480 Msa0125230:three_prime_UTR 45.0%
GGCAGTGACACTCAATTCAT+GGG + chr1_3:53650462-53650481 Msa0125230:three_prime_UTR 45.0%
AATGGGTGAAGTTGGCGAGT+GGG - chr1_3:53644621-53644640 None:intergenic 50.0%
AAATGGGTGAAGTTGGCGAG+TGG - chr1_3:53644622-53644641 None:intergenic 50.0%
! AGCTCTGATGATGAGGGTGA+TGG + chr1_3:53644903-53644922 Msa0125230:CDS 50.0%
! TCTGATGATGAGGGTGATGG+TGG + chr1_3:53644906-53644925 Msa0125230:CDS 50.0%
!! GGGTGATGGTGGTAGTAGAA+TGG + chr1_3:53644917-53644936 Msa0125230:CDS 50.0%
!! TACAAGAGGTGGGTTTTCGC+CGG + chr1_3:53645070-53645089 Msa0125230:CDS 50.0%
! CCGGAATCACCATTTGGGAT+TGG + chr1_3:53645089-53645108 Msa0125230:CDS 50.0%
GTGGTGAAGTGAGGTTTCCT+TGG + chr1_3:53645132-53645151 Msa0125230:CDS 50.0%
TCCTTGGGAGAAACCAGTAG+TGG + chr1_3:53645148-53645167 Msa0125230:CDS 50.0%
!! TCCACTACTGGTTTCTCCCA+AGG - chr1_3:53645152-53645171 None:intergenic 50.0%
CATAAGACGAGAATCGGTGG+TGG + chr1_3:53645287-53645306 Msa0125230:CDS 50.0%
ACGAATCCCCTAAGTTGCAC+TGG - chr1_3:53645499-53645518 None:intergenic 50.0%
GTAGCTCACACCTCTGTACA+AGG - chr1_3:53646061-53646080 None:intergenic 50.0%
! GTACAGAGGTGTGAGCTACA+AGG + chr1_3:53646062-53646081 Msa0125230:CDS 50.0%
!! GGTGCTGACAGAAACTTCGA+AGG - chr1_3:53646135-53646154 None:intergenic 50.0%
ATGCTTCCTCCAACTGTTCC+TGG + chr1_3:53646366-53646385 Msa0125230:CDS 50.0%
TGGTAACCAGGAACAGTTGG+AGG - chr1_3:53646375-53646394 None:intergenic 50.0%
!! GGTTGGTAACCAGGAACAGT+TGG - chr1_3:53646378-53646397 None:intergenic 50.0%
! GAAGAACTCTGAAGGGAGGT+TGG - chr1_3:53646395-53646414 None:intergenic 50.0%
GAGACCGACACTTGGTTTCA+AGG + chr1_3:53646425-53646444 Msa0125230:CDS 50.0%
ACCGACACTTGGTTTCAAGG+AGG + chr1_3:53646428-53646447 Msa0125230:CDS 50.0%
GCCTCCTTGAAACCAAGTGT+CGG - chr1_3:53646432-53646451 None:intergenic 50.0%
AGGAGGCAACTTCTCTACGA+AGG + chr1_3:53646445-53646464 Msa0125230:CDS 50.0%
CTGCAGCCATGATCAAACTG+TGG + chr1_3:53646610-53646629 Msa0125230:CDS 50.0%
GCGAAAGTTGCACTCAAACG+TGG + chr1_3:53646648-53646667 Msa0125230:CDS 50.0%
CTCTTCTGCCATTCTCTCAC+TGG - chr1_3:53646688-53646707 None:intergenic 50.0%
TTCCGGATGCAGAAACTGAC+AGG + chr1_3:53647248-53647267 Msa0125230:intron 50.0%
CACCTGTCAGTTTCTGCATC+CGG - chr1_3:53647253-53647272 None:intergenic 50.0%
AGCAAGGCTTGAGTGACATC+TGG - chr1_3:53647338-53647357 None:intergenic 50.0%
TCACTCAAGCCTTGCTAGAG+AGG + chr1_3:53647342-53647361 Msa0125230:CDS 50.0%
CACTCAAGCCTTGCTAGAGA+GGG + chr1_3:53647343-53647362 Msa0125230:CDS 50.0%
CTCCTCATCCTGCATTGCTT+TGG - chr1_3:53647378-53647397 None:intergenic 50.0%
CAAAGCAATGCAGGATGAGG+AGG + chr1_3:53647376-53647395 Msa0125230:CDS 50.0%
TACATCAGAGTTGTCAGCGG+AGG + chr1_3:53647445-53647464 Msa0125230:CDS 50.0%
TGGGACTCTTGGCGAAACTT+TGG + chr1_3:53647469-53647488 Msa0125230:CDS 50.0%
AAGAGCCCTAATGAAGGTGG+AGG + chr1_3:53647918-53647937 Msa0125230:CDS 50.0%
TTCATGGTTGCAGGTAGACG+TGG + chr1_3:53648225-53648244 Msa0125230:intron 50.0%
! TGCACTTGCACTGGAAGTAC+CGG + chr1_3:53648274-53648293 Msa0125230:CDS 50.0%
CTAGCACTTGAAGCTGAGAG+TGG + chr1_3:53648354-53648373 Msa0125230:CDS 50.0%
!! AGGCAGAGTGGGTTATCAAG+TGG - chr1_3:53648806-53648825 None:intergenic 50.0%
TAGGAAAGCGAAGGCAGAGT+GGG - chr1_3:53648817-53648836 None:intergenic 50.0%
ATAGGAAAGCGAAGGCAGAG+TGG - chr1_3:53648818-53648837 None:intergenic 50.0%
!! GAAAACCGGCTTGTAAGGTG+AGG + chr1_3:53649243-53649262 Msa0125230:intron 50.0%
TTGTGTTGGGTGTTAAGGGG+TGG - chr1_3:53649333-53649352 None:intergenic 50.0%
GCCCCCTAATTGTGGCATTT+GGG - chr1_3:53649386-53649405 None:intergenic 50.0%
AGCCCCCTAATTGTGGCATT+TGG - chr1_3:53649387-53649406 None:intergenic 50.0%
ATGCCACAATTAGGGGGCTA+CGG + chr1_3:53649388-53649407 Msa0125230:intron 50.0%
!! GCTACGGCGGATTGCAATAA+AGG + chr1_3:53649404-53649423 Msa0125230:intron 50.0%
ATTGGGTCCTAAGTGTGAGG+GGG - chr1_3:53649446-53649465 None:intergenic 50.0%
CATTGGGTCCTAAGTGTGAG+GGG - chr1_3:53649447-53649466 None:intergenic 50.0%
CTCATTGGGTCCTAAGTGTG+AGG - chr1_3:53649449-53649468 None:intergenic 50.0%
GTCCATGCGTCAAGCTCATT+GGG - chr1_3:53649463-53649482 None:intergenic 50.0%
! CGAATCTGGCTTGTAAGGTG+AGG + chr1_3:53649552-53649571 Msa0125230:intron 50.0%
TACACGTGGTCTAGGCAACA+TGG + chr1_3:53649597-53649616 Msa0125230:intron 50.0%
ACACGTGGTCTAGGCAACAT+GGG + chr1_3:53649598-53649617 Msa0125230:intron 50.0%
! ACCCAACACAACGAAGGTGT+TGG + chr1_3:53649639-53649658 Msa0125230:intron 50.0%
CTCCAACACCTTCGTTGTGT+TGG - chr1_3:53649644-53649663 None:intergenic 50.0%
!! CAACACAACGAAGGTGTTGG+AGG + chr1_3:53649642-53649661 Msa0125230:intron 50.0%
! GGTGTTGGAGGTTGCAATGA+AGG + chr1_3:53649654-53649673 Msa0125230:intron 50.0%
TCAAATTAGGCAGCTAGGGG+CGG + chr1_3:53649681-53649700 Msa0125230:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr1_3:53650192-53650211 None:intergenic 50.0%
GTGAGGCAAATTCCTCAGGT+TGG - chr1_3:53650382-53650401 None:intergenic 50.0%
GCCTCACAAAGTTGAAGGTC+AGG + chr1_3:53650395-53650414 Msa0125230:exon 50.0%
!! GGTCAGGTGTCGTGATTTTG+TGG + chr1_3:53650411-53650430 Msa0125230:three_prime_UTR 50.0%
!! GTGGTGATGGTGGTGAAGTG+AGG + chr1_3:53645123-53645142 Msa0125230:CDS 55.0%
! AAGACGAGAATCGGTGGTGG+TGG + chr1_3:53645290-53645309 Msa0125230:CDS 55.0%
! CTGGTGGTCTGGTGATTTGG+AGG + chr1_3:53646019-53646038 Msa0125230:CDS 55.0%
! GGTCTGGTGATTTGGAGGTC+TGG + chr1_3:53646024-53646043 Msa0125230:CDS 55.0%
! ATATCCGCATCGACAGGCAG+TGG - chr1_3:53646348-53646367 None:intergenic 55.0%
! GGAAGCATATCCGCATCGAC+AGG - chr1_3:53646354-53646373 None:intergenic 55.0%
!! CTGAAGGGAGGTTGGTAACC+AGG - chr1_3:53646387-53646406 None:intergenic 55.0%
!! AGTGTCGGTCTCACTCCGAA+AGG - chr1_3:53646417-53646436 None:intergenic 55.0%
TTCGGAGTGAGACCGACACT+TGG + chr1_3:53646417-53646436 Msa0125230:CDS 55.0%
CGGATGCAGAAACTGACAGG+TGG + chr1_3:53647251-53647270 Msa0125230:intron 55.0%
GGCCAAAGCAATGCAGGATG+AGG + chr1_3:53647373-53647392 Msa0125230:CDS 55.0%
GGGTCTGCTCTGCTTTCTGA+TGG - chr1_3:53647955-53647974 None:intergenic 55.0%
!! GCACTTGCACTGGAAGTACC+GGG + chr1_3:53648275-53648294 Msa0125230:CDS 55.0%
GCACTTGAAGCTGAGAGTGG+TGG + chr1_3:53648357-53648376 Msa0125230:CDS 55.0%
! AGCTGAGAGTGGTGGTGTTC+TGG + chr1_3:53648365-53648384 Msa0125230:CDS 55.0%
! GTCTCATCATTGAAGGGCGC+TGG - chr1_3:53648449-53648468 None:intergenic 55.0%
! CTAAGTGTGAGGGGGTGTGT+TGG - chr1_3:53649438-53649457 None:intergenic 55.0%
CAACACACCCCCTCACACTT+AGG + chr1_3:53649436-53649455 Msa0125230:intron 55.0%
GACCCAATGAGCTTGACGCA+TGG + chr1_3:53649458-53649477 Msa0125230:intron 55.0%
CGTCCATGCGTCAAGCTCAT+TGG - chr1_3:53649464-53649483 None:intergenic 55.0%
CATGTAGGCGGAGGATGATG+AGG + chr1_3:53650283-53650302 Msa0125230:intron 55.0%
AATCGCCCAAAACCGCCACG+CGG + chr1_3:53644825-53644844 Msa0125230:CDS 60.0%
! AAACCCCGCGTGGCGGTTTT+GGG - chr1_3:53644833-53644852 None:intergenic 60.0%
! AAAACCCCGCGTGGCGGTTT+TGG - chr1_3:53644834-53644853 None:intergenic 60.0%
ACAGGCAGTGGCTCACATCC+AGG - chr1_3:53646336-53646355 None:intergenic 60.0%
TGAGCCACTGCCTGTCGATG+CGG + chr1_3:53646341-53646360 Msa0125230:CDS 60.0%
TCAGAGTTGTCAGCGGAGGC+TGG + chr1_3:53647449-53647468 Msa0125230:CDS 60.0%
CAGAGTTGTCAGCGGAGGCT+GGG + chr1_3:53647450-53647469 Msa0125230:CDS 60.0%
!! GCACTGGAAGTACCGGGAAC+TGG + chr1_3:53648281-53648300 Msa0125230:CDS 60.0%
!! GGCGCTGGTAATCCTTTCCC+CGG - chr1_3:53648434-53648453 None:intergenic 60.0%
GCAGCCCTCACCTTACAAGC+CGG - chr1_3:53649251-53649270 None:intergenic 60.0%
CCACAATTAGGGGGCTACGG+CGG + chr1_3:53649391-53649410 Msa0125230:intron 60.0%
ATCGCCCAAAACCGCCACGC+GGG + chr1_3:53644826-53644845 Msa0125230:CDS 65.0%
TCAGCGGAGGCTGGGACTCT+TGG + chr1_3:53647458-53647477 Msa0125230:CDS 65.0%
CCGCCGTAGCCCCCTAATTG+TGG - chr1_3:53649394-53649413 None:intergenic 65.0%
CTAGGGGCGGACCGCAATGA+AGG + chr1_3:53649694-53649713 Msa0125230:intron 65.0%
TCGCCCAAAACCGCCACGCG+GGG + chr1_3:53644827-53644846 Msa0125230:CDS 70.0%
GGGGCGGACCGCAATGAAGG+CGG + chr1_3:53649697-53649716 Msa0125230:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 53644426 53650781 53644426 ID=Msa0125230;Name=Msa0125230
chr1_3 mRNA 53644426 53650781 53644426 ID=Msa0125230-mRNA-1;Parent=Msa0125230;Name=Msa0125230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=180|1|1|1|1|1|9|372|838
chr1_3 exon 53644426 53645430 53644426 ID=Msa0125230-mRNA-1:exon:16397;Parent=Msa0125230-mRNA-1
chr1_3 exon 53646012 53646501 53646012 ID=Msa0125230-mRNA-1:exon:16398;Parent=Msa0125230-mRNA-1
chr1_3 exon 53646583 53646713 53646583 ID=Msa0125230-mRNA-1:exon:16399;Parent=Msa0125230-mRNA-1
chr1_3 exon 53647260 53647610 53647260 ID=Msa0125230-mRNA-1:exon:16400;Parent=Msa0125230-mRNA-1
chr1_3 exon 53647892 53648048 53647892 ID=Msa0125230-mRNA-1:exon:16401;Parent=Msa0125230-mRNA-1
chr1_3 exon 53648238 53648530 53648238 ID=Msa0125230-mRNA-1:exon:16402;Parent=Msa0125230-mRNA-1
chr1_3 exon 53649910 53649969 53649910 ID=Msa0125230-mRNA-1:exon:16403;Parent=Msa0125230-mRNA-1
chr1_3 exon 53650079 53650168 53650079 ID=Msa0125230-mRNA-1:exon:16404;Parent=Msa0125230-mRNA-1
chr1_3 exon 53650290 53650781 53650290 ID=Msa0125230-mRNA-1:exon:16405;Parent=Msa0125230-mRNA-1
chr1_3 five_prime_UTR 53644426 53644605 53644426 ID=Msa0125230-mRNA-1:five_prime_utr;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53644606 53645430 53644606 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53646012 53646501 53646012 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53646583 53646713 53646583 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53647260 53647610 53647260 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53647892 53648048 53647892 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53648238 53648530 53648238 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53649910 53649969 53649910 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53650079 53650168 53650079 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 CDS 53650290 53650409 53650290 ID=Msa0125230-mRNA-1:cds;Parent=Msa0125230-mRNA-1
chr1_3 three_prime_UTR 53650410 53650781 53650410 ID=Msa0125230-mRNA-1:three_prime_utr;Parent=Msa0125230-mRNA-1
Gene Sequence

>Msa0125230

ATGGCTCTTCTTCCCACTCGCCAACTTCACCCATTTCACACTTCTCCTAACTTCCATCATTCTCTCCGTTTCTTCACCACAATTTCTTCTTCTTCAATCCACAAAAGCTTCATTTTCAAAACACCCACCAAAAATTTCACTTATCTTTCTTCAAAAAATTCCATTTTTTACCATAAGAGTTTCTGCACTGATACATGGTTAAAACGCTGGAATGAACACAATCGCCCAAAACCGCCACGCGGGGTTTTAAATTATCAAGGTTCTGGAAATGGGCATTCATCAAAATCTGATTTTGATAGCTCTGATGATGAGGGTGATGGTGGTAGTAGAATGGATAGAATTGTTGAGAAATTGAAGAAATTTGGGTATGAAAGTGATGAAAATGAGAATATAAAAGAAGAAGGAGTGATAGAAAAAGGGTCAGTGGAGGATATATTTTATGTAGAAGAAGGAATGTTGCCTAATACAAGAGGTGGGTTTTCGCCGGAATCACCATTTGGGATTGGAAGTTATGGAAGTGGTGATGGTGGTGAAGTGAGGTTTCCTTGGGAGAAACCAGTAGTGGATGAAGAAGTTGAAGAGAGGACGAATTCGCGGAAGAAGAGTAAGACTTCTATGGCGGAATTGACTCTTCCTGAGTCTGAATTGAGGAGGTTGCTGAAGTTAACTTTTATGAAGAAGCATAAGACGAGAATCGGTGGTGGTGGTGTTACTCAAGCTGTTGTTGATAAGATTCATGAGAGGTGGAAGACTTCTGAGATTGTTAGGCTTAAGTTTGAAGGTGATGCTGCACTTAACATGAAGAGGATGCATGAGATATTGGAGAAAAAAACTGGTGGTCTGGTGATTTGGAGGTCTGGCAACTCTGTTTCCTTGTACAGAGGTGTGAGCTACAAGGATCCTTCAATACAACAGAATAAACAGTTATATAGGAAAAACGAGAAACCTTCGAAGTTTCTGTCAGCACCTTCGAATGATTTTGAAGTGAAGCCTTCTGAATTTACTTCTGATTCTGAGACAAAAACATCGTTGGAAAAATTGGAATCTACAAATGATCAGAAAGAAAAAGTTAATCTGCCAAAACTCAGTTATGAAGATGAAGTAGACAAGTTATTGGATGGTCTAGGTCCTAGATATACAGATTGGCCTGGATGTGAGCCACTGCCTGTCGATGCGGATATGCTTCCTCCAACTGTTCCTGGTTACCAACCTCCCTTCAGAGTTCTTCCTTTCGGAGTGAGACCGACACTTGGTTTCAAGGAGGCAACTTCTCTACGAAGGATTGCTAGGGGACTCCCTCCACATTTTGCATTAGGTAGAAACAAGCAGCTTCAAGGTTTAGCTGCAGCCATGATCAAACTGTGGGAAAAAAGTTCTATAGCGAAAGTTGCACTCAAACGTGGTGTGCAGCTAACTACCAGTGAGAGAATGGCAGAAGAGATCAAGAAACTGACAGGTGGCATAATGCTCTCCAGAAATAAAGACTTCTTGGTCTTTTATCGAGGGAAGAATTTTTTATCACCAGATGTCACTCAAGCCTTGCTAGAGAGGGAAAGAATGGCCAAAGCAATGCAGGATGAGGAGGAGCATGCAAGATTGAGAGCGTCATCATTGATCTTACCAGCTATTAATACATCAGAGTTGTCAGCGGAGGCTGGGACTCTTGGCGAAACTTTGGATGCAGATGCAAAGTGGGGAAAGACATTGGATGAGCGTCACGAGCAAAAAGTTATGAGAGAAGTAGAACAACTACGGCATGCCAACATCGTTAGAAAGTTAGAAGAGAAGCTTTCACTTGCTGAAAGAAAGATAAGGAGAGCTGAAAGAGCCCTAATGAAGGTGGAGGTGTCTTTGAAGCCATCAGAAAGCAGAGCAGACCCTGAAAGTATAACCGATGAAGAGAGATTTATGTTTCGCAAGTTAGGATTGCGGATGAAAGCTTTCTTACTTCTTGGTAGACGTGGAGTTTTTGACGGTACTATCGAAAACATGCACTTGCACTGGAAGTACCGGGAACTGGTCAAGATAATTGTTAAGGCTAACAACTTTGAACATGTAAAAAAAATTGCACTAGCACTTGAAGCTGAGAGTGGTGGTGTTCTGGTTTCAGTTGACAAAGTTTCAAAAGGATATTCTATACTTGTTTACCGGGGAAAGGATTACCAGCGCCCTTCAATGATGAGACCGAAGAATCTCTTGACAAAGAGAAAGGCTTTGGCACGTTCAATCGAGCTTCAACGACATGAGGCACTTTCAAGTCATATTTCAACTTTGCAAAGTAAAGTGGAGAAGTTAAGATCCGAAATAGAACAAATAGAGAAAGTAAAGGAGGAAGGAGATGAAGCATTGTATAACAGATTAGATTCGGCTTATTCTACAGATGATGATAACTCTGAGGCGGAGGATGATGAGGAAGAAGTTGACGCATATCTTCAGAGTGACAATGATGAAAATGATAGTGAAGTTGAAAGTGATGCTATTAATTTCCAACCTGAGGAATTTGCCTCACAAAGTTGA
Protein sequence

>Msa0125230

MALLPTRQLHPFHTSPNFHHSLRFFTTISSSSIHKSFIFKTPTKNFTYLSSKNSIFYHKSFCTDTWLKRWNEHNRPKPPRGVLNYQGSGNGHSSKSDFDSSDDEGDGGSRMDRIVEKLKKFGYESDENENIKEEGVIEKGSVEDIFYVEEGMLPNTRGGFSPESPFGIGSYGSGDGGEVRFPWEKPVVDEEVEERTNSRKKSKTSMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAVVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDPSIQQNKQLYRKNEKPSKFLSAPSNDFEVKPSEFTSDSETKTSLEKLESTNDQKEKVNLPKLSYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSLRRIARGLPPHFALGRNKQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKLTGGIMLSRNKDFLVFYRGKNFLSPDVTQALLERERMAKAMQDEEEHARLRASSLILPAINTSELSAEAGTLGETLDADAKWGKTLDERHEQKVMREVEQLRHANIVRKLEEKLSLAERKIRRAERALMKVEVSLKPSESRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRPSMMRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEIEQIEKVKEEGDEALYNRLDSAYSTDDDNSEAEDDEEEVDAYLQSDNDENDSEVESDAINFQPEEFASQS*