AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432680 MtrunA17_Chr3g0137751 94.688 320 10 3 1 314 2 320 0.0 617
Msa0432680 MtrunA17_Chr4g0037131 37.500 240 128 7 83 308 13 244 3.36e-41 144
Msa0432680 MtrunA17_Chr5g0405731 37.759 241 128 6 82 308 11 243 1.46e-40 142
Msa0432680 MtrunA17_Chr4g0030171 38.983 236 119 8 89 308 20 246 3.23e-37 133
Msa0432680 MtrunA17_Chr3g0124821 34.818 247 113 9 104 311 121 358 1.40e-29 116
Msa0432680 MtrunA17_Chr3g0129051 27.941 272 129 10 87 304 43 301 6.52e-22 94.0
Msa0432680 MtrunA17_Chr4g0053871 28.025 314 160 10 52 310 7 309 1.74e-21 92.8
Msa0432680 MtrunA17_Chr6g0467121 27.445 317 147 10 54 304 43 342 3.72e-21 92.8
Msa0432680 MtrunA17_Chr4g0013191 29.961 257 115 7 102 306 78 321 7.79e-21 91.3
Msa0432680 MtrunA17_Chr4g0038151 29.520 271 126 10 88 304 41 300 3.00e-20 89.4
Msa0432680 MtrunA17_Chr4g0013201 29.699 266 142 9 83 306 57 319 1.89e-19 87.4
Msa0432680 MtrunA17_Chr1g0188431 30.196 255 109 8 101 304 70 306 1.94e-19 87.0
Msa0432680 MtrunA17_Chr6g0477071 29.286 280 127 10 87 313 69 330 2.70e-19 87.0
Msa0432680 MtrunA17_Chr7g0225221 27.068 266 146 6 88 310 45 305 6.05e-19 85.9
Msa0432680 MtrunA17_Chr8g0364291 29.329 283 118 10 87 304 38 303 7.17e-19 85.5
Msa0432680 MtrunA17_Chr5g0405991 28.409 264 119 10 102 308 55 305 1.44e-18 84.7
Msa0432680 MtrunA17_Chr4g0068621 29.137 278 112 11 101 314 69 325 4.91e-18 83.2
Msa0432680 MtrunA17_Chr1g0157051 30.233 258 112 9 102 304 56 300 6.25e-18 82.8
Msa0432680 MtrunA17_Chr7g0244451 28.938 273 129 10 88 308 40 299 6.74e-18 82.8
Msa0432680 MtrunA17_Chr7g0244461 28.676 272 127 10 88 306 36 293 9.34e-18 82.0
Msa0432680 MtrunA17_Chr3g0106921 28.405 257 116 10 102 304 57 299 1.19e-17 82.0
Msa0432680 MtrunA17_Chr6g0467251 28.413 271 127 9 87 304 51 307 8.37e-17 80.1
Msa0432680 MtrunA17_Chr8g0371381 27.652 264 121 9 102 308 58 308 1.70e-16 78.6
Msa0432680 MtrunA17_Chr3g0128061 29.286 280 142 10 81 309 36 310 1.78e-16 78.6
Msa0432680 MtrunA17_Chr3g0114451 28.195 266 124 7 88 304 50 297 1.89e-16 78.6
Msa0432680 MtrunA17_Chr5g0401431 32.778 180 89 8 88 248 47 213 1.92e-16 78.6
Msa0432680 MtrunA17_Chr2g0320071 28.906 256 113 9 102 304 57 296 2.40e-16 78.2
Msa0432680 MtrunA17_Chr2g0320101 27.473 273 127 11 87 304 40 296 2.40e-16 78.2
Msa0432680 MtrunA17_Chr5g0438021 26.812 276 135 10 83 304 42 304 5.32e-16 77.4
Msa0432680 MtrunA17_Chr5g0404721 27.599 279 131 10 87 306 45 311 1.06e-15 76.6
Msa0432680 MtrunA17_Chr2g0292251 28.906 256 132 9 102 309 60 313 1.06e-15 76.6
Msa0432680 MtrunA17_Chr2g0320051 25.547 274 132 9 87 304 40 297 1.33e-15 76.3
Msa0432680 MtrunA17_Chr6g0451571 25.818 275 137 8 87 304 49 313 3.53e-15 75.1
Msa0432680 MtrunA17_Chr8g0372601 27.376 263 122 7 101 306 61 311 8.26e-15 73.9
Msa0432680 MtrunA17_Chr2g0278671 34.667 150 80 6 95 233 49 191 5.19e-14 71.6
Msa0432680 MtrunA17_Chr3g0129061 28.235 255 118 9 102 304 60 301 1.40e-13 70.1
Msa0432680 MtrunA17_Chr1g0155611 27.941 272 110 9 101 306 77 328 1.65e-13 70.1
Msa0432680 MtrunA17_Chr4g0072091 26.761 284 128 10 88 310 44 308 6.32e-13 68.6
Msa0432680 MtrunA17_Chr1g0148021 30.337 178 111 4 91 258 48 222 1.23e-12 67.4
Msa0432680 MtrunA17_Chr7g0258811 26.984 252 137 8 102 306 101 352 1.58e-12 67.4
Msa0432680 MtrunA17_Chr1g0213061 34.752 141 79 5 102 232 59 196 2.61e-12 66.6
Msa0432680 MtrunA17_Chr7g0254201 25.448 279 135 11 87 309 35 296 6.60e-12 65.5
Msa0432680 MtrunA17_Chr5g0432401 26.990 289 161 13 44 306 3 267 7.84e-12 64.7
Msa0432680 MtrunA17_Chr1g0194271 30.645 186 110 7 87 258 45 225 8.82e-12 65.1
Msa0432680 MtrunA17_Chr3g0106901 29.070 258 114 9 102 306 63 304 9.87e-12 64.7
Msa0432680 MtrunA17_Chr3g0136751 25.896 251 140 8 104 310 59 307 1.01e-11 64.7
Msa0432680 MtrunA17_Chr5g0426581 30.818 159 75 6 104 227 120 278 1.05e-11 65.1
Msa0432680 MtrunA17_Chr2g0292211 28.405 257 132 10 102 309 72 325 1.32e-11 64.7
Msa0432680 MtrunA17_Chr2g0292241 26.471 272 150 10 87 309 44 314 1.35e-11 64.7
Msa0432680 MtrunA17_Chr2g0292091 25.591 254 143 9 102 309 56 309 2.09e-11 63.9
Msa0432680 MtrunA17_Chr3g0129041 27.473 273 131 10 88 306 44 303 3.67e-11 63.2
Msa0432680 MtrunA17_Chr2g0299691 26.493 268 140 11 88 306 80 339 5.68e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432680 AT4G32320.1 65.714 280 84 4 37 314 60 329 3.21e-133 382
Msa0432680 AT3G09640.2 36.653 251 126 7 83 308 4 246 3.89e-39 138
Msa0432680 AT3G09640.1 36.653 251 126 7 83 308 4 246 3.89e-39 138
Msa0432680 AT4G35970.1 37.500 240 127 7 83 308 11 241 1.59e-38 137
Msa0432680 AT4G35000.1 37.551 245 131 7 83 313 12 248 3.44e-38 137
Msa0432680 AT1G07890.6 36.910 233 128 6 89 308 20 246 7.23e-37 132
Msa0432680 AT1G07890.2 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0432680 AT1G07890.8 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0432680 AT1G07890.4 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0432680 AT1G07890.7 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0432680 AT1G07890.1 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0432680 AT1G07890.3 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0432680 AT1G07890.5 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa0432680 AT4G35970.2 37.727 220 114 7 83 288 11 221 8.07e-34 124
Msa0432680 AT4G08390.3 33.333 246 120 8 104 312 126 364 2.13e-29 115
Msa0432680 AT4G08390.2 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa0432680 AT4G08390.5 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa0432680 AT4G08390.1 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa0432680 AT1G77490.1 33.835 266 130 9 86 312 86 344 1.00e-28 114
Msa0432680 AT1G77490.2 33.835 266 130 9 86 312 86 344 1.12e-28 114
Msa0432680 AT4G08390.4 33.778 225 121 8 104 312 127 339 1.01e-24 102
Msa0432680 AT1G14550.1 30.909 275 120 12 88 306 42 302 2.01e-21 93.2
Msa0432680 AT1G14540.1 27.660 282 115 10 88 304 37 294 6.30e-20 89.0
Msa0432680 AT4G16270.1 31.179 263 108 9 101 304 81 329 8.79e-20 89.0
Msa0432680 AT5G47000.1 30.189 265 121 8 101 312 64 317 9.46e-20 88.6
Msa0432680 AT4G31760.1 29.688 256 124 9 104 310 63 311 5.37e-19 86.3
Msa0432680 AT5G40150.1 29.562 274 120 9 93 309 55 312 1.08e-18 85.5
Msa0432680 AT5G14130.1 29.329 283 129 8 86 310 46 315 3.77e-18 84.0
Msa0432680 AT3G28200.1 27.509 269 133 8 93 310 44 301 4.61e-18 83.6
Msa0432680 AT4G17690.1 30.153 262 120 8 101 310 57 307 5.55e-18 83.6
Msa0432680 AT4G33420.2 30.315 254 128 10 101 313 115 360 8.76e-18 83.6
Msa0432680 AT5G14130.2 29.329 283 129 8 86 310 87 356 9.04e-18 83.2
Msa0432680 AT4G33420.1 29.545 264 117 9 101 313 68 313 9.57e-18 82.8
Msa0432680 AT2G24800.1 26.459 257 132 8 104 310 65 314 2.22e-16 79.0
Msa0432680 AT3G50990.1 28.679 265 116 10 101 306 72 322 3.89e-16 78.2
Msa0432680 AT4G37520.1 29.670 273 111 9 105 313 62 317 4.36e-16 78.2
Msa0432680 AT4G37530.1 27.586 290 127 10 88 313 47 317 6.05e-16 77.8
Msa0432680 AT1G24110.1 25.949 316 153 10 61 314 15 311 6.54e-16 77.4
Msa0432680 AT5G42180.1 27.985 268 154 10 63 308 8 258 8.44e-16 77.0
Msa0432680 AT3G17070.1 26.616 263 133 10 95 304 63 318 2.70e-15 75.9
Msa0432680 AT4G37530.2 32.402 179 91 7 88 248 47 213 5.73e-15 74.3
Msa0432680 AT5G17820.1 25.243 309 150 10 54 304 7 292 1.70e-14 73.2
Msa0432680 AT5G05340.1 26.667 255 122 9 102 304 62 303 2.96e-14 72.8
Msa0432680 AT4G37520.2 29.455 275 110 10 103 313 60 314 3.78e-14 72.4
Msa0432680 AT5G06720.1 26.667 270 140 9 88 306 52 314 4.22e-14 72.4
Msa0432680 AT5G17820.2 25.243 309 150 10 54 304 60 345 5.90e-14 72.0
Msa0432680 AT2G18150.1 27.444 266 118 8 101 306 67 317 7.24e-14 71.6
Msa0432680 AT5G06730.1 25.912 274 143 10 87 306 48 315 1.12e-13 71.2
Msa0432680 AT2G22420.1 26.766 269 140 8 87 304 38 300 1.12e-13 70.9
Msa0432680 AT1G71695.1 26.199 271 136 8 87 304 59 318 1.35e-13 70.9
Msa0432680 AT3G17070.2 27.523 218 114 8 131 304 38 255 1.02e-12 67.8
Msa0432680 AT4G09010.2 32.061 131 55 5 104 200 51 181 2.08e-11 63.9
Msa0432680 AT4G09010.1 32.061 131 55 5 104 200 116 246 2.89e-11 63.9
Msa0432680 AT4G09010.3 32.061 131 55 5 104 200 163 293 5.72e-11 63.2

Find 76 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACATGACGGTTGTAATT+TGG 0.179181 3_2:-84898518 None:intergenic
TAACCAAAGTATTTACATTA+AGG 0.197456 3_2:+84902917 Msa0432680:three_prime_UTR
TTCATATTATAAGGTTCTTT+TGG 0.228709 3_2:+84901426 Msa0432680:CDS
CGCTCCGACCATGCTTCTTC+AGG 0.236229 3_2:+84898556 Msa0432680:CDS
GAGGAAACTCTTGATGCTTC+TGG 0.303467 3_2:+84900914 Msa0432680:CDS
AACAAGATATCTATCCTAAA+AGG 0.305705 3_2:+84898399 Msa0432680:five_prime_UTR
CTTTACCTTTGTTAGTATCC+TGG 0.313796 3_2:+84900500 Msa0432680:intron
GAGAAGCCATGGACGCCTTC+TGG 0.322202 3_2:+84901448 Msa0432680:CDS
AACCAAAGTATTTACATTAA+GGG 0.348545 3_2:+84902918 Msa0432680:three_prime_UTR
TTAGGATAGATATCTTGTTT+AGG 0.349280 3_2:-84898395 None:intergenic
ACTCTTGGAAGTAAAGGTTT+TGG 0.369606 3_2:+84901382 Msa0432680:CDS
CGTATTGTGCAGTGCGCATC+AGG 0.370162 3_2:+84898475 Msa0432680:CDS
CACCCTTAATGTAAATACTT+TGG 0.385557 3_2:-84902920 None:intergenic
AAGTGTTTATATTAATTTGT+TGG 0.386924 3_2:+84902960 Msa0432680:three_prime_UTR
GGCTGCAGGTGTGCTTCGTT+TGG 0.388465 3_2:+84899433 Msa0432680:CDS
GGAAGTTTCCCTTCAGGATC+AGG 0.389840 3_2:-84900890 None:intergenic
TCCTCGGGAAGTTTCCCTTC+AGG 0.392970 3_2:-84900896 None:intergenic
TATGTCAAGCTGGTGAATTC+TGG 0.399120 3_2:+84902776 Msa0432680:CDS
TTTGAAATTGATGACAATAC+AGG 0.426747 3_2:+84899476 Msa0432680:CDS
TTTACCTTTGTTAGTATCCT+GGG 0.437764 3_2:+84900501 Msa0432680:intron
AGTGGAATAGCTTATAAATC+AGG 0.438593 3_2:+84902804 Msa0432680:exon
ATATTAATTTGTTGGTCTGA+TGG 0.440040 3_2:+84902968 Msa0432680:three_prime_UTR
ACTTCGATCTTCTAATACTC+TGG 0.444660 3_2:+84902995 Msa0432680:three_prime_UTR
TATGAATTGTCAAAAGAAGT+AGG 0.453434 3_2:-84901409 None:intergenic
TTTCAAAAGTTCCAGCATCA+TGG 0.457488 3_2:-84899460 None:intergenic
TTGTCTGGAGCTCACACTCT+TGG 0.477240 3_2:+84901367 Msa0432680:CDS
TTGAGGATGATGAATGCTTA+AGG 0.477644 3_2:+84901639 Msa0432680:CDS
ATCCTAAAAGGAAAAGGAAA+AGG 0.478683 3_2:+84898411 Msa0432680:five_prime_UTR
CAAGAACTAGTAGCTTTGTC+TGG 0.485206 3_2:+84901352 Msa0432680:CDS
GCGGACGTTATTGCTGTGGC+TGG 0.487431 3_2:+84900523 Msa0432680:CDS
ATATCTATCCTAAAAGGAAA+AGG 0.496884 3_2:+84898405 Msa0432680:five_prime_UTR
CATGACGGTTGTAATTTGGC+GGG 0.504477 3_2:-84898514 None:intergenic
GGGTGCTTACGGCATGGCGT+TGG 0.513752 3_2:-84898762 None:intergenic
TTGAGGAAGGTATTGACAAA+GGG 0.514007 3_2:+84899407 Msa0432680:CDS
ACATGACGGTTGTAATTTGG+CGG 0.514760 3_2:-84898515 None:intergenic
ATGAATTGTCAAAAGAAGTA+GGG 0.515097 3_2:-84901408 None:intergenic
TTCAGATCACGCACTTGTTG+AGG 0.515812 3_2:+84901622 Msa0432680:CDS
CCGAGCGAAACTGTGATAGT+AGG 0.518423 3_2:-84900574 None:intergenic
GTTGTTGTAGGTGGTATGAA+TGG 0.519310 3_2:+84900133 Msa0432680:intron
AAACAAGATGTCCCTTGAGT+TGG 0.519443 3_2:-84902838 None:intergenic
AGAAGCATCAAGAGTTTCCT+CGG 0.519712 3_2:-84900912 None:intergenic
CTGATGCGCACTGCACAATA+CGG 0.521753 3_2:-84898474 None:intergenic
TTGACAAAGGGAAAGGCTGC+AGG 0.522171 3_2:+84899419 Msa0432680:CDS
GCTCACACTCTTGGAAGTAA+AGG 0.522477 3_2:+84901376 Msa0432680:CDS
AGAAGCAAAGATATGAGTGA+GGG 0.525513 3_2:-84898732 None:intergenic
GAGAAGCAAAGATATGAGTG+AGG 0.527735 3_2:-84898733 None:intergenic
GTTGAGGAAGGTATTGACAA+AGG 0.532606 3_2:+84899406 Msa0432680:CDS
CACAGCAATAACGTCCGCCC+AGG 0.540378 3_2:-84900518 None:intergenic
CAGATAGATGCTATCCATCC+AGG 0.541954 3_2:+84900411 Msa0432680:CDS
ACTTTACCAGAAGGCGTCCA+TGG 0.549342 3_2:-84901454 None:intergenic
CTCACCTGAAGAAGCATGGT+CGG 0.559728 3_2:-84898560 None:intergenic
TCAACAAGTGCGTGATCTGA+AGG 0.564701 3_2:-84901620 None:intergenic
CTTGAAAGACCTGAAAATGC+TGG 0.570720 3_2:+84900172 Msa0432680:CDS
AGGTTTCAAGTAGTAGCAGT+AGG 0.580648 3_2:+84898663 Msa0432680:CDS
GGTGGTATGTCGACTATGAT+CGG 0.580931 3_2:+84901593 Msa0432680:intron
TTCTAATTAAACAAGAGTTG+AGG 0.581889 3_2:+84899390 Msa0432680:CDS
GCTGAAGCAGTTGAAGTATG+TGG 0.592512 3_2:+84900547 Msa0432680:CDS
AGTTGAAAGTTCCAACTCAA+GGG 0.598778 3_2:+84902827 Msa0432680:three_prime_UTR
GAAGCATCAAGAGTTTCCTC+GGG 0.599360 3_2:-84900911 None:intergenic
GAAGCAAAGATATGAGTGAG+GGG 0.603163 3_2:-84898731 None:intergenic
CCTACTATCACAGTTTCGCT+CGG 0.605954 3_2:+84900574 Msa0432680:CDS
CTCACTCACCTGAAGAAGCA+TGG 0.606221 3_2:-84898564 None:intergenic
AGAGAAAACAAGGACCTGGA+TGG 0.607635 3_2:-84900425 None:intergenic
GAGTTGAAAGTTCCAACTCA+AGG 0.610408 3_2:+84902826 Msa0432680:three_prime_UTR
ATTGTGCAGTGCGCATCAGG+TGG 0.617666 3_2:+84898478 Msa0432680:CDS
GAAGGTATTGACAAAGGGAA+AGG 0.621122 3_2:+84899412 Msa0432680:CDS
TGAGTGAGGGGAAGAAGACA+TGG 0.622960 3_2:-84898719 None:intergenic
AATTAAACAAGAGTTGAGGA+AGG 0.623996 3_2:+84899394 Msa0432680:CDS
CTGGGCGGACGTTATTGCTG+TGG 0.636998 3_2:+84900519 Msa0432680:CDS
AAGTAGTAGCAGTAGGAGAG+CGG 0.646507 3_2:+84898670 Msa0432680:CDS
TGGTGAATTCTGGTGTGAAG+TGG 0.657138 3_2:+84902786 Msa0432680:CDS
TTAACAGTTGACACACATGA+CGG 0.670912 3_2:-84898529 None:intergenic
TCCTGAAGGGAAACTTCCCG+AGG 0.679146 3_2:+84900895 Msa0432680:CDS
GAAGCAGTTGAAGTATGTGG+AGG 0.696962 3_2:+84900550 Msa0432680:CDS
ACCTTTGTTAGTATCCTGGG+CGG 0.708491 3_2:+84900504 Msa0432680:intron
GGTTCAAAACAAGCACACAA+CGG 0.722533 3_2:+84903016 Msa0432680:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCATTAAATCTATATTA+AGG + chr3_2:84898802-84898821 Msa0432680:intron 10.0%
!!! TTTTTTTTACTTTCTTTTAT+TGG + chr3_2:84899221-84899240 Msa0432680:intron 10.0%
!!! TTTTTTTACTTTCTTTTATT+GGG + chr3_2:84899222-84899241 Msa0432680:intron 10.0%
!! AATATGAATGAAAATATTAT+AGG - chr3_2:84900856-84900875 None:intergenic 10.0%
!!! AATATTTTCATTCATATTAA+TGG + chr3_2:84900858-84900877 Msa0432680:intron 10.0%
!! TAGATTTAATGAATTAATAC+AGG - chr3_2:84898797-84898816 None:intergenic 15.0%
!!! TTTTTTACTTTCTTTTATTG+GGG + chr3_2:84899223-84899242 Msa0432680:intron 15.0%
!! TTCAGTAAAAAAAATCAAAA+CGG - chr3_2:84899712-84899731 None:intergenic 15.0%
!!! GATATTTTTTTATGTTTTCT+TGG + chr3_2:84899998-84900017 Msa0432680:intron 15.0%
!!! AAAGGTAAAGTAAATTTTAT+TGG - chr3_2:84900490-84900509 None:intergenic 15.0%
!!! TCATAACTTTTTTTTTTAAG+AGG - chr3_2:84901032-84901051 None:intergenic 15.0%
!!! TTTTGACAATTCATATTATA+AGG + chr3_2:84901417-84901436 Msa0432680:CDS 15.0%
!!! ATTTTAAATTTCAACTAGAA+CGG - chr3_2:84902015-84902034 None:intergenic 15.0%
!!! TAAGGAATTTTTTTTTTTGA+AGG - chr3_2:84902080-84902099 None:intergenic 15.0%
!!! AAGTGTTTATATTAATTTGT+TGG + chr3_2:84902960-84902979 Msa0432680:three_prime_UTR 15.0%
!! TAATGAATTAATACAGGAAT+GGG - chr3_2:84898791-84898810 None:intergenic 20.0%
!! TTAATGAATTAATACAGGAA+TGG - chr3_2:84898792-84898811 None:intergenic 20.0%
!! AGCTCAAATAAAACAATTTA+AGG - chr3_2:84899006-84899025 None:intergenic 20.0%
!!! GTTGAATATTATTCAGTTTT+AGG + chr3_2:84899647-84899666 Msa0432680:intron 20.0%
!! TCTGAGCAAAAAAAATAAAT+TGG + chr3_2:84899966-84899985 Msa0432680:intron 20.0%
!! TATTCAAGTAATAAACGTAA+AGG - chr3_2:84900256-84900275 None:intergenic 20.0%
!! TTCATGTAGATTTAATTCAT+GGG + chr3_2:84900796-84900815 Msa0432680:intron 20.0%
!! AATGAAAATATTATAGGCAA+AGG - chr3_2:84900850-84900869 None:intergenic 20.0%
!! TTCATTCATATTAATGGTAT+AGG + chr3_2:84900864-84900883 Msa0432680:intron 20.0%
!! TCATTCATATTAATGGTATA+GGG + chr3_2:84900865-84900884 Msa0432680:intron 20.0%
!!! TTTTATAGAAAGAATATTCG+CGG - chr3_2:84901083-84901102 None:intergenic 20.0%
!!! TTCATATTATAAGGTTCTTT+TGG + chr3_2:84901426-84901445 Msa0432680:CDS 20.0%
!! AACAAGCTAATAAATATGAT+AGG - chr3_2:84901511-84901530 None:intergenic 20.0%
!! AACAATTGAAAACAATACTT+TGG + chr3_2:84901834-84901853 Msa0432680:intron 20.0%
!! ATTAGTGATTAATTACTTCT+TGG + chr3_2:84901908-84901927 Msa0432680:intron 20.0%
!!! TTTTAAATTTCAACTAGAAC+GGG - chr3_2:84902014-84902033 None:intergenic 20.0%
!!! AATATATAAAAGGAGTATAC+AGG + chr3_2:84902205-84902224 Msa0432680:intron 20.0%
!!! ATATATAAAAGGAGTATACA+GGG + chr3_2:84902206-84902225 Msa0432680:intron 20.0%
!! ACATAAAAAAATGAATCCTA+AGG - chr3_2:84902522-84902541 None:intergenic 20.0%
!!! AACTTTATTTATTGAACAGA+TGG + chr3_2:84902699-84902718 Msa0432680:intron 20.0%
!!! AATACTTTGGTTAACTTTTT+GGG - chr3_2:84902910-84902929 None:intergenic 20.0%
!!! AAATACTTTGGTTAACTTTT+TGG - chr3_2:84902911-84902930 None:intergenic 20.0%
!!! TAACCAAAGTATTTACATTA+AGG + chr3_2:84902917-84902936 Msa0432680:three_prime_UTR 20.0%
!!! AACCAAAGTATTTACATTAA+GGG + chr3_2:84902918-84902937 Msa0432680:three_prime_UTR 20.0%
!! TTAGGATAGATATCTTGTTT+AGG - chr3_2:84898398-84898417 None:intergenic 25.0%
! AACAAGATATCTATCCTAAA+AGG + chr3_2:84898399-84898418 Msa0432680:five_prime_UTR 25.0%
! ATATCTATCCTAAAAGGAAA+AGG + chr3_2:84898405-84898424 Msa0432680:five_prime_UTR 25.0%
! AATTTACACTAATGATGTAG+AGG + chr3_2:84898643-84898662 Msa0432680:intron 25.0%
! AATCTATATTAAGGCCTATT+TGG + chr3_2:84898811-84898830 Msa0432680:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG - chr3_2:84898828-84898847 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATCT+TGG - chr3_2:84898922-84898941 None:intergenic 25.0%
! AATAAGCTGAAAATAGTTGA+TGG - chr3_2:84899085-84899104 None:intergenic 25.0%
! CTTATTTCCATAAACTCTTT+AGG + chr3_2:84899099-84899118 Msa0432680:intron 25.0%
! AATCTATCCTAAAGAGTTTA+TGG - chr3_2:84899109-84899128 None:intergenic 25.0%
!!! AAACTCTTTAGGATAGATTA+AGG + chr3_2:84899110-84899129 Msa0432680:intron 25.0%
! TTCTAATTAAACAAGAGTTG+AGG + chr3_2:84899390-84899409 Msa0432680:CDS 25.0%
!! TTTGAAATTGATGACAATAC+AGG + chr3_2:84899476-84899495 Msa0432680:CDS 25.0%
! GAAATCTGAATCTTGTATAA+AGG + chr3_2:84899582-84899601 Msa0432680:intron 25.0%
! AAAAAAAATCAAAACGGTAC+TGG - chr3_2:84899706-84899725 None:intergenic 25.0%
! AATTTCTTGATCACCTAATT+TGG + chr3_2:84899762-84899781 Msa0432680:intron 25.0%
! ATCAAGAAATTCAAAAAGTC+TGG - chr3_2:84900298-84900317 None:intergenic 25.0%
! CTTCATGTAGATTTAATTCA+TGG + chr3_2:84900795-84900814 Msa0432680:intron 25.0%
! CATTCATATTAATGGTATAG+GGG + chr3_2:84900866-84900885 Msa0432680:intron 25.0%
! ATTCATATTAATGGTATAGG+GGG + chr3_2:84900867-84900886 Msa0432680:intron 25.0%
! AACACAAATGCAAAGTAAAT+GGG - chr3_2:84900991-84901010 None:intergenic 25.0%
! TAACACAAATGCAAAGTAAA+TGG - chr3_2:84900992-84901011 None:intergenic 25.0%
! ATGTGCTAATATTTGTCATT+GGG + chr3_2:84901250-84901269 Msa0432680:intron 25.0%
! TGTGAAAGAAAAGTTTCAAA+TGG - chr3_2:84901327-84901346 None:intergenic 25.0%
! ATGAATTGTCAAAAGAAGTA+GGG - chr3_2:84901411-84901430 None:intergenic 25.0%
! TATGAATTGTCAAAAGAAGT+AGG - chr3_2:84901412-84901431 None:intergenic 25.0%
! TCACAAAAAATAAATGCAGT+GGG - chr3_2:84901714-84901733 None:intergenic 25.0%
! TTCACAAAAAATAAATGCAG+TGG - chr3_2:84901715-84901734 None:intergenic 25.0%
!! ATGTCAGTTTTCAAATAGTA+AGG + chr3_2:84902033-84902052 Msa0432680:intron 25.0%
!!! TTTTTTTTTGAAGGAGGTTA+AGG - chr3_2:84902071-84902090 None:intergenic 25.0%
!!! GGAATTTTTTTTTTTGAAGG+AGG - chr3_2:84902077-84902096 None:intergenic 25.0%
!!! TATTTTAGAAATGTAGAGGT+GGG - chr3_2:84902338-84902357 None:intergenic 25.0%
!!! ATGGTATTTTAGAAATGTAG+AGG - chr3_2:84902342-84902361 None:intergenic 25.0%
! TTAGTCATTTACTACATAAG+AGG - chr3_2:84902584-84902603 None:intergenic 25.0%
!! ATACTTTGGTTAACTTTTTG+GGG - chr3_2:84902909-84902928 None:intergenic 25.0%
!!! ATATTAATTTGTTGGTCTGA+TGG + chr3_2:84902968-84902987 Msa0432680:three_prime_UTR 25.0%
ATCCTAAAAGGAAAAGGAAA+AGG + chr3_2:84898411-84898430 Msa0432680:five_prime_UTR 30.0%
! TTCCTTTTCCTTTTCCTTTT+AGG - chr3_2:84898416-84898435 None:intergenic 30.0%
ATTAATACAGGAATGGGATT+GGG - chr3_2:84898785-84898804 None:intergenic 30.0%
AATTAATACAGGAATGGGAT+TGG - chr3_2:84898786-84898805 None:intergenic 30.0%
!!! CATGTCATAAGCTGTTTTTA+TGG - chr3_2:84898863-84898882 None:intergenic 30.0%
ATAGCAAGTGTTTATGCTAA+TGG - chr3_2:84899032-84899051 None:intergenic 30.0%
TGTGTGTATTACTATTGGAT+TGG + chr3_2:84899249-84899268 Msa0432680:intron 30.0%
! TTACTATTGGATTGGATTAG+AGG + chr3_2:84899257-84899276 Msa0432680:intron 30.0%
! TACTATTGGATTGGATTAGA+GGG + chr3_2:84899258-84899277 Msa0432680:intron 30.0%
! AGAAGATATTCTTTTGTACC+TGG - chr3_2:84899374-84899393 None:intergenic 30.0%
AATTAAACAAGAGTTGAGGA+AGG + chr3_2:84899394-84899413 Msa0432680:CDS 30.0%
CAAGATTCAGATTTCTTCAT+CGG - chr3_2:84899577-84899596 None:intergenic 30.0%
AATAAAATACCCGTGTTGAA+AGG + chr3_2:84899609-84899628 Msa0432680:intron 30.0%
TAATATCAGTCCTTTCAACA+CGG - chr3_2:84899622-84899641 None:intergenic 30.0%
TAGGTGATCAAGAAATTAAG+CGG - chr3_2:84899759-84899778 None:intergenic 30.0%
! GAGTTTTACATAGTACAACA+GGG - chr3_2:84899802-84899821 None:intergenic 30.0%
TTGTACTATGTAAAACTCCA+CGG + chr3_2:84899804-84899823 Msa0432680:intron 30.0%
ATATAAAATCAGGTTTACCG+TGG - chr3_2:84899824-84899843 None:intergenic 30.0%
CAACTTGGCAATATAAAATC+AGG - chr3_2:84899834-84899853 None:intergenic 30.0%
CATAGACATTACATACAACT+TGG - chr3_2:84899849-84899868 None:intergenic 30.0%
GTCTATGTCTATTATCAATG+TGG + chr3_2:84899862-84899881 Msa0432680:intron 30.0%
ATAGTTTCATCACAAGTAAC+AGG + chr3_2:84900023-84900042 Msa0432680:intron 30.0%
TTGTCTGTTTATGTTGTTGT+AGG + chr3_2:84900121-84900140 Msa0432680:intron 30.0%
TGGTCTGAAAAAATCAGTAA+AGG + chr3_2:84900192-84900211 Msa0432680:intron 30.0%
ATAAACGTAAAGGAGAAGAA+GGG - chr3_2:84900246-84900265 None:intergenic 30.0%
AATAAACGTAAAGGAGAAGA+AGG - chr3_2:84900247-84900266 None:intergenic 30.0%
!!! CATCTTATATTTTAATCGCC+AGG + chr3_2:84900327-84900346 Msa0432680:intron 30.0%
! GGATTTATCACATGTTGTTT+AGG + chr3_2:84900368-84900387 Msa0432680:intron 30.0%
ACAAATTACCAGAGAAAACA+AGG - chr3_2:84900438-84900457 None:intergenic 30.0%
TTTACCTTTGTTAGTATCCT+GGG + chr3_2:84900501-84900520 Msa0432680:intron 30.0%
TGCTTGTCATATCCTATATA+CGG - chr3_2:84900644-84900663 None:intergenic 30.0%
TTGTTCTTTATACAACAGCA+TGG - chr3_2:84900752-84900771 None:intergenic 30.0%
!! GAAGCTGTTTCTTTCTAAAA+TGG - chr3_2:84900779-84900798 None:intergenic 30.0%
CAATGACAAATATTAGCACA+TGG - chr3_2:84901251-84901270 None:intergenic 30.0%
CATGTGCTAATATTTGTCAT+TGG + chr3_2:84901249-84901268 Msa0432680:intron 30.0%
ATGCATGAGCAAAATTATTC+TGG - chr3_2:84901298-84901317 None:intergenic 30.0%
CACAAAAAATAAATGCAGTG+GGG - chr3_2:84901713-84901732 None:intergenic 30.0%
ACTAGGATCTCAATTCAAAA+AGG + chr3_2:84901745-84901764 Msa0432680:intron 30.0%
! GGAGGTTAAGGAAATTTTTA+TGG - chr3_2:84902059-84902078 None:intergenic 30.0%
ATTCCTTAACCAAATAGTGA+TGG + chr3_2:84902092-84902111 Msa0432680:intron 30.0%
!! ATTTTAGAAATGTAGAGGTG+GGG - chr3_2:84902337-84902356 None:intergenic 30.0%
!! GTATTTTAGAAATGTAGAGG+TGG - chr3_2:84902339-84902358 None:intergenic 30.0%
! TTTACTTCTGAAAACGTGTA+TGG - chr3_2:84902361-84902380 None:intergenic 30.0%
ACACATCTGAAAAAATGTTG+AGG + chr3_2:84902451-84902470 Msa0432680:intron 30.0%
CACATCTGAAAAAATGTTGA+GGG + chr3_2:84902452-84902471 Msa0432680:intron 30.0%
ACATCTGAAAAAATGTTGAG+GGG + chr3_2:84902453-84902472 Msa0432680:intron 30.0%
!!! GAAAGTTTTAAAATGCTCAC+AGG + chr3_2:84902480-84902499 Msa0432680:intron 30.0%
! ACTACATAAGAGGTTCTTTT+AGG - chr3_2:84902574-84902593 None:intergenic 30.0%
AGTGGAATAGCTTATAAATC+AGG + chr3_2:84902804-84902823 Msa0432680:exon 30.0%
CACCCTTAATGTAAATACTT+TGG - chr3_2:84902923-84902942 None:intergenic 30.0%
TTAACAGTTGACACACATGA+CGG - chr3_2:84898532-84898551 None:intergenic 35.0%
AGAAGCAAAGATATGAGTGA+GGG - chr3_2:84898735-84898754 None:intergenic 35.0%
CAGCTTATGACATGTTCATT+AGG + chr3_2:84898869-84898888 Msa0432680:intron 35.0%
! AGCGCTTCATTCTAAAGAAA+TGG + chr3_2:84899181-84899200 Msa0432680:intron 35.0%
GGCATTGTGTGTATTACTAT+TGG + chr3_2:84899244-84899263 Msa0432680:intron 35.0%
!! CTTCATAATGGGTAAAAGCA+AGG - chr3_2:84899350-84899369 None:intergenic 35.0%
! TTTTACCCATTATGAAGACC+AGG + chr3_2:84899353-84899372 Msa0432680:intron 35.0%
! TTGTACCTGGTCTTCATAAT+GGG - chr3_2:84899361-84899380 None:intergenic 35.0%
! TTTGTACCTGGTCTTCATAA+TGG - chr3_2:84899362-84899381 None:intergenic 35.0%
!! TTGAGGAAGGTATTGACAAA+GGG + chr3_2:84899407-84899426 Msa0432680:CDS 35.0%
TTTCAAAAGTTCCAGCATCA+TGG - chr3_2:84899463-84899482 None:intergenic 35.0%
AATATCAGTCCTTTCAACAC+GGG - chr3_2:84899621-84899640 None:intergenic 35.0%
! GGAGTTTTACATAGTACAAC+AGG - chr3_2:84899803-84899822 None:intergenic 35.0%
ATGTAATTCAAGCGTTTGCT+CGG + chr3_2:84899910-84899929 Msa0432680:intron 35.0%
TGTATGGGTAAATTTGCACA+AGG + chr3_2:84899943-84899962 Msa0432680:intron 35.0%
TCTGTTTATGTTGTTGTAGG+TGG + chr3_2:84900124-84900143 Msa0432680:intron 35.0%
!! TTTTTCAGACCAGCATTTTC+AGG - chr3_2:84900184-84900203 None:intergenic 35.0%
TAAACGTAAAGGAGAAGAAG+GGG - chr3_2:84900245-84900264 None:intergenic 35.0%
CTTTACCTTTGTTAGTATCC+TGG + chr3_2:84900500-84900519 Msa0432680:intron 35.0%
ACCAGACAATCATCAACTTA+CGG - chr3_2:84900613-84900632 None:intergenic 35.0%
!! ACTTGTTGTTTGTCATCCTT+AGG - chr3_2:84900682-84900701 None:intergenic 35.0%
CATGGACATAACTCAAAAGT+AGG - chr3_2:84900734-84900753 None:intergenic 35.0%
AAGAGATGCTTCCAGAAAAA+AGG + chr3_2:84900941-84900960 Msa0432680:CDS 35.0%
!!! CTCACGAAAAACCTTTTTTC+TGG - chr3_2:84900955-84900974 None:intergenic 35.0%
CTTTGCATTTGTGTTATGCA+TGG + chr3_2:84900996-84901015 Msa0432680:intron 35.0%
! GTGTTATGCATGGATGATTT+TGG + chr3_2:84901006-84901025 Msa0432680:intron 35.0%
AGTTATGGATGATCAGCAAT+TGG - chr3_2:84901111-84901130 None:intergenic 35.0%
ACGACTCTCATGTTAAGTTA+TGG - chr3_2:84901126-84901145 None:intergenic 35.0%
!!! TGTTGCTCTGGTTTTAACTT+AGG - chr3_2:84901190-84901209 None:intergenic 35.0%
AGTTAAAACCAGAGCAACAA+AGG + chr3_2:84901191-84901210 Msa0432680:intron 35.0%
! ACTCTTGGAAGTAAAGGTTT+TGG + chr3_2:84901382-84901401 Msa0432680:CDS 35.0%
!! TGAGTTGTTACTTTACCAGA+AGG - chr3_2:84901466-84901485 None:intergenic 35.0%
CTGTATAAAAGAGAACCAGT+GGG - chr3_2:84901574-84901593 None:intergenic 35.0%
TTGAGGATGATGAATGCTTA+AGG + chr3_2:84901639-84901658 Msa0432680:CDS 35.0%
GTTCCATCACTATTTGGTTA+AGG - chr3_2:84902098-84902117 None:intergenic 35.0%
!! TTTCTGGTTCCATCACTATT+TGG - chr3_2:84902104-84902123 None:intergenic 35.0%
GGGTCAAACACATACAATAT+GGG + chr3_2:84902134-84902153 Msa0432680:intron 35.0%
GGTCAAACACATACAATATG+GGG + chr3_2:84902135-84902154 Msa0432680:intron 35.0%
TACAGGGAAAATTACAGAGT+TGG + chr3_2:84902222-84902241 Msa0432680:intron 35.0%
ACAGGGAAAATTACAGAGTT+GGG + chr3_2:84902223-84902242 Msa0432680:intron 35.0%
CAAAGGTGAACATTGGTATT+GGG - chr3_2:84902264-84902283 None:intergenic 35.0%
AAAATGCATACCCTGGTTAA+AGG + chr3_2:84902301-84902320 Msa0432680:intron 35.0%
ATCCATATAAGCAAACAACG+AGG + chr3_2:84902546-84902565 Msa0432680:intron 35.0%
GCATGTGACAATTAATATCC+CGG + chr3_2:84902616-84902635 Msa0432680:intron 35.0%
CTCGTAAGTAATGCAAATTG+AGG - chr3_2:84902679-84902698 None:intergenic 35.0%
AGTTGAAAGTTCCAACTCAA+GGG + chr3_2:84902827-84902846 Msa0432680:three_prime_UTR 35.0%
ACTTCGATCTTCTAATACTC+TGG + chr3_2:84902995-84903014 Msa0432680:three_prime_UTR 35.0%
ACATGACGGTTGTAATTTGG+CGG - chr3_2:84898518-84898537 None:intergenic 40.0%
CACACATGACGGTTGTAATT+TGG - chr3_2:84898521-84898540 None:intergenic 40.0%
AAAACACTACCCAGCAGATT+TGG - chr3_2:84898604-84898623 None:intergenic 40.0%
! AGGTTTCAAGTAGTAGCAGT+AGG + chr3_2:84898663-84898682 Msa0432680:CDS 40.0%
GAAGCAAAGATATGAGTGAG+GGG - chr3_2:84898734-84898753 None:intergenic 40.0%
GAGAAGCAAAGATATGAGTG+AGG - chr3_2:84898736-84898755 None:intergenic 40.0%
GCTATAATTGACATGCTCGT+TGG + chr3_2:84899311-84899330 Msa0432680:intron 40.0%
!! GTTGAGGAAGGTATTGACAA+AGG + chr3_2:84899406-84899425 Msa0432680:CDS 40.0%
!! GAAGGTATTGACAAAGGGAA+AGG + chr3_2:84899412-84899431 Msa0432680:CDS 40.0%
! TACAGGTATACATCTAGCTC+AGG + chr3_2:84899493-84899512 Msa0432680:intron 40.0%
! ACAGGTATACATCTAGCTCA+GGG + chr3_2:84899494-84899513 Msa0432680:intron 40.0%
CATGTGCTTGATGCCAAATT+AGG - chr3_2:84899778-84899797 None:intergenic 40.0%
CTAATTTGGCATCAAGCACA+TGG + chr3_2:84899776-84899795 Msa0432680:intron 40.0%
GTTGTTGTAGGTGGTATGAA+TGG + chr3_2:84900133-84900152 Msa0432680:intron 40.0%
CTTGAAAGACCTGAAAATGC+TGG + chr3_2:84900172-84900191 Msa0432680:CDS 40.0%
!! ACCGTAAGTTGATGATTGTC+TGG + chr3_2:84900609-84900628 Msa0432680:intron 40.0%
TGGTACTCTAGTCCGTATAT+AGG + chr3_2:84900629-84900648 Msa0432680:intron 40.0%
ATCCTTAGGAGAAAAGATCG+CGG - chr3_2:84900668-84900687 None:intergenic 40.0%
!! AGAAGCATCAAGAGTTTCCT+CGG - chr3_2:84900915-84900934 None:intergenic 40.0%
TAAAACCAGAGCAACAAAGG+AGG + chr3_2:84901194-84901213 Msa0432680:intron 40.0%
! ATTTTCCTCCTTTGTTGCTC+TGG - chr3_2:84901202-84901221 None:intergenic 40.0%
!! CAAGAACTAGTAGCTTTGTC+TGG + chr3_2:84901352-84901371 Msa0432680:CDS 40.0%
!!! TTTTTTTCACTCTCACCCAC+TGG + chr3_2:84901556-84901575 Msa0432680:intron 40.0%
CCTGTATAAAAGAGAACCAG+TGG - chr3_2:84901575-84901594 None:intergenic 40.0%
!!! CCACTGGTTCTCTTTTATAC+AGG + chr3_2:84901572-84901591 Msa0432680:intron 40.0%
!! CTGGTTCTCTTTTATACAGG+TGG + chr3_2:84901575-84901594 Msa0432680:intron 40.0%
GTTAGTAAGTTCCTTGTGTC+TGG + chr3_2:84901942-84901961 Msa0432680:intron 40.0%
AAACAGATACTCCAGACACA+AGG - chr3_2:84901956-84901975 None:intergenic 40.0%
GGGGTCAAACACATACAATA+TGG + chr3_2:84902133-84902152 Msa0432680:intron 40.0%
! GTGAACATTGGTATTGGGTA+TGG - chr3_2:84902259-84902278 None:intergenic 40.0%
GCAAAGGTGAACATTGGTAT+TGG - chr3_2:84902265-84902284 None:intergenic 40.0%
GCAAATGCAAAGGTGAACAT+TGG - chr3_2:84902271-84902290 None:intergenic 40.0%
CAAGGGAAATGCAAATGCAA+AGG - chr3_2:84902281-84902300 None:intergenic 40.0%
! ACCAGGGTATGCATTTTCAA+GGG - chr3_2:84902298-84902317 None:intergenic 40.0%
! AACCAGGGTATGCATTTTCA+AGG - chr3_2:84902299-84902318 None:intergenic 40.0%
AAATTTGCCGCCTTTAACCA+GGG - chr3_2:84902314-84902333 None:intergenic 40.0%
! TCTAGATGCCATAGTTTGTC+TGG + chr3_2:84902383-84902402 Msa0432680:intron 40.0%
TGAAAAAATGTTGAGGGGCA+TGG + chr3_2:84902458-84902477 Msa0432680:intron 40.0%
AAATGCTCACAGGTGTTTGT+TGG + chr3_2:84902490-84902509 Msa0432680:intron 40.0%
AATGCTCACAGGTGTTTGTT+GGG + chr3_2:84902491-84902510 Msa0432680:intron 40.0%
CACCTCGTTGTTTGCTTATA+TGG - chr3_2:84902551-84902570 None:intergenic 40.0%
ACAATTAATATCCCGGTGCA+CGG + chr3_2:84902623-84902642 Msa0432680:intron 40.0%
CAAAAACGTGTATGTCAAGC+TGG + chr3_2:84902766-84902785 Msa0432680:CDS 40.0%
TATGTCAAGCTGGTGAATTC+TGG + chr3_2:84902776-84902795 Msa0432680:CDS 40.0%
GAGTTGAAAGTTCCAACTCA+AGG + chr3_2:84902826-84902845 Msa0432680:three_prime_UTR 40.0%
AAACAAGATGTCCCTTGAGT+TGG - chr3_2:84902841-84902860 None:intergenic 40.0%
GGTTCAAAACAAGCACACAA+CGG + chr3_2:84903016-84903035 Msa0432680:three_prime_UTR 40.0%
CATGACGGTTGTAATTTGGC+GGG - chr3_2:84898517-84898536 None:intergenic 45.0%
CTTGTACCTCCAAATCTGCT+GGG + chr3_2:84898592-84898611 Msa0432680:intron 45.0%
AAGTAGTAGCAGTAGGAGAG+CGG + chr3_2:84898670-84898689 Msa0432680:CDS 45.0%
!!! CGTTTGGTTTTCCATGATGC+TGG + chr3_2:84899449-84899468 Msa0432680:CDS 45.0%
! CAGGTATACATCTAGCTCAG+GGG + chr3_2:84899495-84899514 Msa0432680:intron 45.0%
! TCTTCATCGGTTGACTTTGC+TGG - chr3_2:84899564-84899583 None:intergenic 45.0%
!! AAAACGGTACTGGCAGTATG+TGG - chr3_2:84899696-84899715 None:intergenic 45.0%
CTCGGCAATTGCATCTGTAT+GGG + chr3_2:84899928-84899947 Msa0432680:intron 45.0%
CAGATAGATGCTATCCATCC+AGG + chr3_2:84900411-84900430 Msa0432680:CDS 45.0%
AGAGAAAACAAGGACCTGGA+TGG - chr3_2:84900428-84900447 None:intergenic 45.0%
!!! ATCCAGGTCCTTGTTTTCTC+TGG + chr3_2:84900427-84900446 Msa0432680:intron 45.0%
TACCAGAGAAAACAAGGACC+TGG - chr3_2:84900432-84900451 None:intergenic 45.0%
ACCTTTGTTAGTATCCTGGG+CGG + chr3_2:84900504-84900523 Msa0432680:intron 45.0%
GCTGAAGCAGTTGAAGTATG+TGG + chr3_2:84900547-84900566 Msa0432680:CDS 45.0%
GAAGCAGTTGAAGTATGTGG+AGG + chr3_2:84900550-84900569 Msa0432680:CDS 45.0%
CCTACTATCACAGTTTCGCT+CGG + chr3_2:84900574-84900593 Msa0432680:CDS 45.0%
! AACCGCGATCTTTTCTCCTA+AGG + chr3_2:84900663-84900682 Msa0432680:intron 45.0%
! GAAGCATCAAGAGTTTCCTC+GGG - chr3_2:84900914-84900933 None:intergenic 45.0%
GAGGAAACTCTTGATGCTTC+TGG + chr3_2:84900914-84900933 Msa0432680:CDS 45.0%
GCTCACACTCTTGGAAGTAA+AGG + chr3_2:84901376-84901395 Msa0432680:CDS 45.0%
!! AGGTTCTTTTGGAGAAGCCA+TGG + chr3_2:84901437-84901456 Msa0432680:CDS 45.0%
! GGTGGTATGTCGACTATGAT+CGG + chr3_2:84901593-84901612 Msa0432680:intron 45.0%
TCAACAAGTGCGTGATCTGA+AGG - chr3_2:84901623-84901642 None:intergenic 45.0%
! TTCAGATCACGCACTTGTTG+AGG + chr3_2:84901622-84901641 Msa0432680:CDS 45.0%
TTGTGAAGCAGTCAAGCACT+AGG + chr3_2:84901728-84901747 Msa0432680:intron 45.0%
TCCCTTGAAAATGCATACCC+TGG + chr3_2:84902294-84902313 Msa0432680:intron 45.0%
ATGCATACCCTGGTTAAAGG+CGG + chr3_2:84902304-84902323 Msa0432680:intron 45.0%
GAAATTTGCCGCCTTTAACC+AGG - chr3_2:84902315-84902334 None:intergenic 45.0%
GCACACTTCCAGACAAACTA+TGG - chr3_2:84902394-84902413 None:intergenic 45.0%
! TGTTTGTTGGGCTTAGCCTT+AGG + chr3_2:84902503-84902522 Msa0432680:intron 45.0%
TGGTGAATTCTGGTGTGAAG+TGG + chr3_2:84902786-84902805 Msa0432680:CDS 45.0%
!! TTAATCTAAATATTATTTAA+AGG - chr3_2:84901774-84901793 None:intergenic 5.0%
!! TTATTAAGTAAATATATAAA+AGG + chr3_2:84902195-84902214 Msa0432680:intron 5.0%
CTGATGCGCACTGCACAATA+CGG - chr3_2:84898477-84898496 None:intergenic 50.0%
! CTCACCTGAAGAAGCATGGT+CGG - chr3_2:84898563-84898582 None:intergenic 50.0%
CTCACTCACCTGAAGAAGCA+TGG - chr3_2:84898567-84898586 None:intergenic 50.0%
CATGCTTCTTCAGGTGAGTG+AGG + chr3_2:84898565-84898584 Msa0432680:intron 50.0%
! CCAGCAGATTTGGAGGTACA+AGG - chr3_2:84898594-84898613 None:intergenic 50.0%
CCTTGTACCTCCAAATCTGC+TGG + chr3_2:84898591-84898610 Msa0432680:intron 50.0%
ACACTACCCAGCAGATTTGG+AGG - chr3_2:84898601-84898620 None:intergenic 50.0%
TGAGTGAGGGGAAGAAGACA+TGG - chr3_2:84898722-84898741 None:intergenic 50.0%
GGAATGGGATTGGGTGCTTA+CGG - chr3_2:84898776-84898795 None:intergenic 50.0%
! GGATTGGATTAGAGGGAGTG+AGG + chr3_2:84899265-84899284 Msa0432680:intron 50.0%
! TTGGATTAGAGGGAGTGAGG+AGG + chr3_2:84899268-84899287 Msa0432680:intron 50.0%
TTGACAAAGGGAAAGGCTGC+AGG + chr3_2:84899419-84899438 Msa0432680:CDS 50.0%
GCTCGGCAATTGCATCTGTA+TGG + chr3_2:84899927-84899946 Msa0432680:intron 50.0%
TCCGCCCAGGATACTAACAA+AGG - chr3_2:84900508-84900527 None:intergenic 50.0%
CCGAGCGAAACTGTGATAGT+AGG - chr3_2:84900577-84900596 None:intergenic 50.0%
GGAAGTTTCCCTTCAGGATC+AGG - chr3_2:84900893-84900912 None:intergenic 50.0%
! TTGTCTGGAGCTCACACTCT+TGG + chr3_2:84901367-84901386 Msa0432680:CDS 50.0%
!! ACTTTACCAGAAGGCGTCCA+TGG - chr3_2:84901457-84901476 None:intergenic 50.0%
TGGAACCAGAAACTTGCGTC+AGG + chr3_2:84902112-84902131 Msa0432680:intron 50.0%
GGAACCAGAAACTTGCGTCA+GGG + chr3_2:84902113-84902132 Msa0432680:intron 50.0%
GAACCAGAAACTTGCGTCAG+GGG + chr3_2:84902114-84902133 Msa0432680:intron 50.0%
!! AGTGTGCTTTGAGACGACAC+AGG + chr3_2:84902407-84902426 Msa0432680:intron 50.0%
CGTATTGTGCAGTGCGCATC+AGG + chr3_2:84898475-84898494 Msa0432680:CDS 55.0%
ATTGTGCAGTGCGCATCAGG+TGG + chr3_2:84898478-84898497 Msa0432680:CDS 55.0%
ACTGAGACGTTAGCTGAGCC+TGG - chr3_2:84900348-84900367 None:intergenic 55.0%
AGGCTCAGCTAACGTCTCAG+TGG + chr3_2:84900347-84900366 Msa0432680:intron 55.0%
TATAGGGGGCCTGATCCTGA+AGG + chr3_2:84900881-84900900 Msa0432680:intron 55.0%
ATAGGGGGCCTGATCCTGAA+GGG + chr3_2:84900882-84900901 Msa0432680:intron 55.0%
TCCTGAAGGGAAACTTCCCG+AGG + chr3_2:84900895-84900914 Msa0432680:CDS 55.0%
TCCTCGGGAAGTTTCCCTTC+AGG - chr3_2:84900899-84900918 None:intergenic 55.0%
TGACCCCTGACGCAAGTTTC+TGG - chr3_2:84902120-84902139 None:intergenic 55.0%
TGCATACACATGCCGTGCAC+CGG - chr3_2:84902638-84902657 None:intergenic 55.0%
CGCTCCGACCATGCTTCTTC+AGG + chr3_2:84898556-84898575 Msa0432680:CDS 60.0%
GGGATTGGGTGCTTACGGCA+TGG - chr3_2:84898771-84898790 None:intergenic 60.0%
GGCTGCAGGTGTGCTTCGTT+TGG + chr3_2:84899433-84899452 Msa0432680:CDS 60.0%
CACAGCAATAACGTCCGCCC+AGG - chr3_2:84900521-84900540 None:intergenic 60.0%
CTGGGCGGACGTTATTGCTG+TGG + chr3_2:84900519-84900538 Msa0432680:CDS 60.0%
GCGGACGTTATTGCTGTGGC+TGG + chr3_2:84900523-84900542 Msa0432680:CDS 60.0%
GAGAAGCCATGGACGCCTTC+TGG + chr3_2:84901448-84901467 Msa0432680:CDS 60.0%
GCATACACATGCCGTGCACC+GGG - chr3_2:84902637-84902656 None:intergenic 60.0%
GGGTGCTTACGGCATGGCGT+TGG - chr3_2:84898765-84898784 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84898395 84903044 84898395 ID=Msa0432680;Name=Msa0432680
chr3_2 mRNA 84898395 84903044 84898395 ID=Msa0432680-mRNA-1;Parent=Msa0432680;Name=Msa0432680-mRNA-1;_AED=0.28;_eAED=0.28;_QI=59|0.88|0.9|1|1|1|10|224|314
chr3_2 exon 84898395 84898577 84898395 ID=Msa0432680-mRNA-1:exon:24141;Parent=Msa0432680-mRNA-1
chr3_2 exon 84898663 84898774 84898663 ID=Msa0432680-mRNA-1:exon:24142;Parent=Msa0432680-mRNA-1
chr3_2 exon 84899370 84899497 84899370 ID=Msa0432680-mRNA-1:exon:24143;Parent=Msa0432680-mRNA-1
chr3_2 exon 84900143 84900207 84900143 ID=Msa0432680-mRNA-1:exon:24144;Parent=Msa0432680-mRNA-1
chr3_2 exon 84900390 84900432 84900390 ID=Msa0432680-mRNA-1:exon:24145;Parent=Msa0432680-mRNA-1
chr3_2 exon 84900515 84900611 84900515 ID=Msa0432680-mRNA-1:exon:24146;Parent=Msa0432680-mRNA-1
chr3_2 exon 84900886 84900969 84900886 ID=Msa0432680-mRNA-1:exon:24147;Parent=Msa0432680-mRNA-1
chr3_2 exon 84901348 84901469 84901348 ID=Msa0432680-mRNA-1:exon:24148;Parent=Msa0432680-mRNA-1
chr3_2 exon 84901594 84901660 84901594 ID=Msa0432680-mRNA-1:exon:24149;Parent=Msa0432680-mRNA-1
chr3_2 exon 84902718 84903044 84902718 ID=Msa0432680-mRNA-1:exon:24150;Parent=Msa0432680-mRNA-1
chr3_2 five_prime_UTR 84898395 84898453 84898395 ID=Msa0432680-mRNA-1:five_prime_utr;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84898454 84898577 84898454 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84898663 84898774 84898663 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84899370 84899497 84899370 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84900143 84900207 84900143 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84900390 84900432 84900390 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84900515 84900611 84900515 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84900886 84900969 84900886 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84901348 84901469 84901348 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84901594 84901660 84901594 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 CDS 84902718 84902820 84902718 ID=Msa0432680-mRNA-1:cds;Parent=Msa0432680-mRNA-1
chr3_2 three_prime_UTR 84902821 84903044 84902821 ID=Msa0432680-mRNA-1:three_prime_utr;Parent=Msa0432680-mRNA-1
Gene Sequence

>Msa0432680

ATGTGTTCAAGAGTGAGTAACCGTATTGTGCAGTGCGCATCAGGTGGCGAAAGCAGTTATCCCGCCAAATTACAACCGTCATGTGTGTCAACTGTTAAGTTTCGCTCCGACCATGCTTCTTCAGAGGTTTCAAGTAGTAGCAGTAGGAGAGCGGTAATATTCAGCAGCATAGCTACGTTGCCATGTCTTCTTCCCCTCACTCATATCTTTGCTTCTCTTCAAGCCAACGCCATGCCACCAGGTACAAAAGAATATCTTCTAATTAAACAAGAGTTGAGGAAGGTATTGACAAAGGGAAAGGCTGCAGGTGTGCTTCGTTTGGTTTTCCATGATGCTGGAACTTTTGAAATTGATGACAATACAGGTGGTATGAATGGCTCTGTAGTCTATGAACTTGAAAGACCTGAAAATGCTGGTCTGAAAAAATCAGTTCTACAAAAAGCAAAGACTCAGATAGATGCTATCCATCCAGTATCCTGGGCGGACGTTATTGCTGTGGCTGGAGCTGAAGCAGTTGAAGTATGTGGAGGTCCTACTATCACAGTTTCGCTCGGCAGACAAGACTCACCGGGGCCTGATCCTGAAGGGAAACTTCCCGAGGAAACTCTTGATGCTTCTGGTTTGAAGAGATGCTTCCAGAAAAAAGGTTTTTCAACACAAGAACTAGTAGCTTTGTCTGGAGCTCACACTCTTGGAAGTAAAGGTTTTGGAAGCCCTACTTCTTTTGACAATTCATATTATAAGGTTCTTTTGGAGAAGCCATGGACGCCTTCTGGTGGTATGTCGACTATGATCGGTCTTCCTTCAGATCACGCACTTGTTGAGGATGATGAATGCTTAAGATGGATTAAAAAATACGCAGAGAATGAGAATATGTTCTTTGAAGACTTCAAAAACGTGTATGTCAAGCTGGTGAATTCTGGTGTGAAGTGGAATAGCTTATAA
Protein sequence

>Msa0432680

MCSRVSNRIVQCASGGESSYPAKLQPSCVSTVKFRSDHASSEVSSSSSRRAVIFSSIATLPCLLPLTHIFASLQANAMPPGTKEYLLIKQELRKVLTKGKAAGVLRLVFHDAGTFEIDDNTGGMNGSVVYELERPENAGLKKSVLQKAKTQIDAIHPVSWADVIAVAGAEAVEVCGGPTITVSLGRQDSPGPDPEGKLPEETLDASGLKRCFQKKGFSTQELVALSGAHTLGSKGFGSPTSFDNSYYKVLLEKPWTPSGGMSTMIGLPSDHALVEDDECLRWIKKYAENENMFFEDFKNVYVKLVNSGVKWNSL*