Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736280 | XP_039690668.1 | 88.000 | 475 | 37 | 1 | 65 | 539 | 1 | 455 | 0.0 | 830 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736280 | A0A396HXY4 | 85.863 | 481 | 40 | 3 | 65 | 539 | 1 | 459 | 0.0 | 822 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026120 | Msa0736280 | 0.810115 | 1.353083e-50 | -8.615850e-47 |
| Msa0046670 | Msa0736280 | 0.804595 | 2.003691e-49 | -8.615850e-47 |
| Msa0112800 | Msa0736280 | 0.811919 | 5.501115e-51 | -8.615850e-47 |
| Msa0713530 | Msa0736280 | 0.803251 | 3.810801e-49 | -8.615850e-47 |
| Msa0736280 | Msa0755590 | 0.806741 | 7.098832e-50 | -8.615850e-47 |
| Msa0736280 | Msa0778030 | 0.870859 | 1.061226e-66 | -8.615850e-47 |
| Msa0736280 | Msa0815380 | 0.905718 | 3.193125e-80 | -8.615850e-47 |
| Msa0736280 | Msa0818950 | 0.800225 | 1.592661e-48 | -8.615850e-47 |
| Msa0736280 | Msa0835010 | 0.800186 | 1.621544e-48 | -8.615850e-47 |
| Msa0736280 | Msa0839730 | 0.812309 | 4.524247e-51 | -8.615850e-47 |
| Msa0736280 | Msa0855520 | 0.883906 | 3.017931e-71 | -8.615850e-47 |
| Msa0736280 | Msa0866960 | 0.814875 | 1.232755e-51 | -8.615850e-47 |
| Msa0736280 | Msa1031220 | 0.819202 | 1.314631e-52 | -8.615850e-47 |
| Msa0736280 | Msa1242430 | 0.803381 | 3.582147e-49 | -8.615850e-47 |
| Msa0736280 | Msa1294520 | 0.814967 | 1.176267e-51 | -8.615850e-47 |
| Msa0736280 | Msa1329820 | 0.808357 | 3.222812e-50 | -8.615850e-47 |
| Msa0736280 | Msa1413880 | 0.801015 | 1.099194e-48 | -8.615850e-47 |
| Msa0736280 | Msa1439160 | 0.805763 | 1.140920e-49 | -8.615850e-47 |
| Msa0166580 | Msa0736280 | 0.825304 | 5.041677e-54 | -8.615850e-47 |
| Msa0201910 | Msa0736280 | 0.804268 | 2.343182e-49 | -8.615850e-47 |
| Msa0207530 | Msa0736280 | 0.824211 | 9.126556e-54 | -8.615850e-47 |
| Msa0207900 | Msa0736280 | 0.828429 | 9.033694e-55 | -8.615850e-47 |
| Msa0413040 | Msa0736280 | 0.824211 | 9.126863e-54 | -8.615850e-47 |
| Msa0451370 | Msa0736280 | 0.824279 | 8.797983e-54 | -8.615850e-47 |
| Msa0477070 | Msa0736280 | 0.814739 | 1.321511e-51 | -8.615850e-47 |
| Msa0282880 | Msa0736280 | 0.801474 | 8.851686e-49 | -8.615850e-47 |
| Msa0359230 | Msa0736280 | 0.810615 | 1.055446e-50 | -8.615850e-47 |
| Msa0493640 | Msa0736280 | 0.813445 | 2.550804e-51 | -8.615850e-47 |
| Msa0521440 | Msa0736280 | 0.811951 | 5.413925e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736280 | MtrunA17_Chr5g0433421 | 85.863 | 481 | 40 | 3 | 65 | 539 | 1 | 459 | 0.0 | 822 |
| Msa0736280 | MtrunA17_Chr5g0433511 | 83.918 | 485 | 55 | 2 | 64 | 525 | 1 | 485 | 0.0 | 800 |
| Msa0736280 | MtrunA17_Chr5g0433351 | 63.017 | 411 | 127 | 5 | 65 | 465 | 1 | 396 | 6.34e-174 | 499 |
| Msa0736280 | MtrunA17_Chr5g0433471 | 57.474 | 475 | 167 | 10 | 74 | 539 | 21 | 469 | 2.13e-172 | 511 |
| Msa0736280 | MtrunA17_Chr5g0433361 | 60.238 | 420 | 121 | 9 | 75 | 465 | 30 | 432 | 5.27e-160 | 478 |
| Msa0736280 | MtrunA17_Chr3g0109541 | 48.255 | 487 | 202 | 14 | 73 | 539 | 13 | 469 | 2.46e-130 | 402 |
| Msa0736280 | MtrunA17_Chr5g0433371 | 46.835 | 474 | 210 | 12 | 73 | 532 | 16 | 461 | 1.08e-126 | 393 |
| Msa0736280 | MtrunA17_Chr5g0433321 | 43.908 | 476 | 224 | 10 | 73 | 532 | 15 | 463 | 7.96e-117 | 366 |
| Msa0736280 | MtrunA17_Chr3g0109551 | 41.876 | 437 | 209 | 13 | 64 | 484 | 5 | 412 | 1.01e-92 | 306 |
| Msa0736280 | MtrunA17_Chr8g0375181 | 32.464 | 422 | 233 | 14 | 74 | 475 | 82 | 471 | 4.69e-59 | 212 |
| Msa0736280 | MtrunA17_Chr8g0375191 | 31.731 | 416 | 234 | 14 | 75 | 472 | 26 | 409 | 4.44e-53 | 195 |
| Msa0736280 | MtrunA17_Chr3g0094211 | 29.567 | 416 | 251 | 13 | 74 | 475 | 17 | 404 | 2.00e-50 | 186 |
| Msa0736280 | MtrunA17_Chr3g0117771 | 47.317 | 205 | 88 | 5 | 96 | 299 | 124 | 309 | 9.14e-48 | 168 |
| Msa0736280 | MtrunA17_Chr8g0375151 | 31.620 | 389 | 220 | 13 | 104 | 475 | 8 | 367 | 1.48e-47 | 178 |
| Msa0736280 | MtrunA17_Chr8g0375861 | 29.829 | 409 | 246 | 13 | 73 | 472 | 21 | 397 | 4.09e-39 | 153 |
| Msa0736280 | MtrunA17_Chr8g0375871 | 29.829 | 409 | 246 | 13 | 73 | 472 | 21 | 397 | 4.48e-39 | 153 |
| Msa0736280 | MtrunA17_Chr4g0030281 | 43.077 | 130 | 61 | 4 | 96 | 224 | 329 | 446 | 1.83e-16 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736280 | AT1G65810.2 | 38.009 | 442 | 234 | 10 | 75 | 496 | 22 | 443 | 4.66e-83 | 279 |
| Msa0736280 | AT1G65810.1 | 38.009 | 442 | 234 | 10 | 75 | 496 | 22 | 443 | 6.50e-83 | 279 |
| Msa0736280 | AT1G65810.3 | 38.009 | 442 | 234 | 10 | 75 | 496 | 22 | 443 | 6.59e-83 | 278 |
| Msa0736280 | AT1G65780.1 | 37.981 | 416 | 220 | 9 | 65 | 474 | 1 | 384 | 2.47e-77 | 264 |
| Msa0736280 | AT5G37150.1 | 36.650 | 412 | 207 | 14 | 69 | 472 | 3 | 368 | 1.73e-66 | 231 |
| Msa0736280 | AT5G37160.1 | 33.705 | 448 | 222 | 14 | 62 | 472 | 7 | 416 | 1.56e-61 | 209 |
| Msa0736280 | AT5G37030.1 | 34.152 | 407 | 191 | 11 | 69 | 467 | 3 | 340 | 1.98e-50 | 183 |
| Msa0736280 | AT5G37140.1 | 41.739 | 230 | 111 | 5 | 248 | 472 | 8 | 219 | 8.48e-46 | 171 |
| Msa0736280 | AT5G52090.1 | 40.807 | 223 | 107 | 6 | 257 | 472 | 1 | 205 | 5.48e-42 | 160 |
| Msa0736280 | AT4G05540.1 | 33.524 | 349 | 179 | 14 | 201 | 530 | 11 | 325 | 4.30e-39 | 152 |
Find 89 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAACAAATGTTCGTATT+TGG | 0.157759 | 5_1:-52374185 | Msa0736280:CDS |
| TACCATATTGCCTATGTTAA+TGG | 0.194743 | 5_1:-52374330 | Msa0736280:CDS |
| TTAAGTGACATTGTGCTATT+TGG | 0.225562 | 5_1:-52373508 | Msa0736280:CDS |
| ATGCTAATACCAAACTGATA+TGG | 0.238865 | 5_1:-52373699 | Msa0736280:CDS |
| TTATAGATATTGTACTTTCT+TGG | 0.269492 | 5_1:-52375331 | Msa0736280:CDS |
| TCCTAGTAAACAATATTTCT+TGG | 0.275195 | 5_1:-52373350 | Msa0736280:CDS |
| AATGATTGTTTAGCAAATAA+TGG | 0.290512 | 5_1:-52375381 | Msa0736280:intron |
| TTCTACATTCAGGACAAGTT+TGG | 0.295395 | 5_1:-52377842 | Msa0736280:intron |
| CCCCATTAACATAGGCAATA+TGG | 0.296858 | 5_1:+52374328 | None:intergenic |
| ACAAGTTTGGGTATGAGTTC+AGG | 0.301067 | 5_1:-52377829 | Msa0736280:CDS |
| AACATCCATCTTCATGCATT+TGG | 0.305607 | 5_1:+52374266 | None:intergenic |
| ACCATATTGCCTATGTTAAT+GGG | 0.311487 | 5_1:-52374329 | Msa0736280:CDS |
| TTTCTTGGAGATGTCCAAAA+AGG | 0.312865 | 5_1:-52373335 | Msa0736280:CDS |
| ACCCTTTGACTTTGAGTTCA+AGG | 0.323180 | 5_1:+52374158 | None:intergenic |
| AAAAGCAGTCAAATTGAGTT+TGG | 0.333989 | 5_1:-52377724 | Msa0736280:CDS |
| TGCTAATACCAAACTGATAT+GGG | 0.358247 | 5_1:-52373698 | Msa0736280:CDS |
| GATTTATCTTCAAGCTTGTC+TGG | 0.361546 | 5_1:-52374588 | Msa0736280:CDS |
| TGCAACACTGCAGTATTAGT+TGG | 0.387175 | 5_1:+52373589 | None:intergenic |
| GTAATTCTTACATTGAGATT+AGG | 0.388186 | 5_1:+52374102 | None:intergenic |
| GGTTACAAGCTGTGCTAGTA+TGG | 0.391737 | 5_1:-52373734 | Msa0736280:CDS |
| ATAATGGAGAAGAGTAGAAA+TGG | 0.394778 | 5_1:-52375365 | Msa0736280:CDS |
| GAGAAGAGTAGAAATGGAAG+TGG | 0.395897 | 5_1:-52375359 | Msa0736280:CDS |
| TTCAGTTCCATCATACCATA+TGG | 0.406454 | 5_1:-52374482 | Msa0736280:CDS |
| TCTACATTCAGGACAAGTTT+GGG | 0.414210 | 5_1:-52377841 | Msa0736280:intron |
| GCTTGTAACCGCATCTTGTT+GGG | 0.416012 | 5_1:+52373747 | None:intergenic |
| GAAAATTATGAACCTGCATC+AGG | 0.416436 | 5_1:-52374420 | Msa0736280:CDS |
| CAGTCAAATTGAGTTTGGTT+CGG | 0.419203 | 5_1:-52377719 | Msa0736280:CDS |
| TTATTGCTATTACATACATT+AGG | 0.420584 | 5_1:-52374392 | Msa0736280:CDS |
| TCCAAGAAATATTGTTTACT+AGG | 0.427879 | 5_1:+52373349 | None:intergenic |
| GAATCTGATAGAGATGAAAA+TGG | 0.430012 | 5_1:-52374444 | Msa0736280:CDS |
| TGGTCTGATTATGAGGTTTG+AGG | 0.438685 | 5_1:-52373242 | Msa0736280:CDS |
| GTTGCTGACTTAAATGTCTC+TGG | 0.443060 | 5_1:+52374660 | None:intergenic |
| TCACTTGACGATGATACATA+TGG | 0.444215 | 5_1:-52373532 | Msa0736280:CDS |
| GGAACTATGGTCTGATTATG+AGG | 0.460379 | 5_1:-52373249 | Msa0736280:CDS |
| CAAGTTTGGGTATGAGTTCA+GGG | 0.460859 | 5_1:-52377828 | Msa0736280:CDS |
| AAGATAAGTAAGGGGAACTA+TGG | 0.462535 | 5_1:-52373262 | Msa0736280:CDS |
| CTGAAATACAAGCATTATAC+AGG | 0.463169 | 5_1:+52373864 | None:intergenic |
| ATGAAAGTGGAAAGTTATCC+AGG | 0.463937 | 5_1:-52373472 | Msa0736280:CDS |
| AGCTTGTAACCGCATCTTGT+TGG | 0.464083 | 5_1:+52373746 | None:intergenic |
| GGGATGAGTAACGGAGATAT+AGG | 0.482119 | 5_1:+52377797 | None:intergenic |
| AATCACTAAGCTATACCAAT+TGG | 0.484827 | 5_1:-52373194 | Msa0736280:CDS |
| ATCTTCCAAATGCATGAAGA+TGG | 0.494801 | 5_1:-52374271 | Msa0736280:CDS |
| AGTTGTACTCTCCAACCATA+TGG | 0.501731 | 5_1:+52374467 | None:intergenic |
| GCCTTGAACTCAAAGTCAAA+GGG | 0.503702 | 5_1:-52374159 | Msa0736280:CDS |
| CGATTTCAAAATACGGGTAC+GGG | 0.506183 | 5_1:+52377777 | None:intergenic |
| TTTCCCCGATTTCAAAATAC+GGG | 0.508106 | 5_1:+52377771 | None:intergenic |
| TGGTGGTCCCCATATCAGTT+TGG | 0.515701 | 5_1:+52373690 | None:intergenic |
| TCATGCATACAAGATAAGTA+AGG | 0.516685 | 5_1:-52373272 | Msa0736280:CDS |
| GTTCCATCATACCATATGGT+TGG | 0.518572 | 5_1:-52374478 | Msa0736280:CDS |
| TCTCCAACCATATGGTATGA+TGG | 0.520600 | 5_1:+52374475 | None:intergenic |
| TCATGCAGTGCTATGCTGAA+TGG | 0.523619 | 5_1:-52373411 | Msa0736280:CDS |
| CCGATTTCAAAATACGGGTA+CGG | 0.523775 | 5_1:+52377776 | None:intergenic |
| GCAATAAGATCTCCTGATGC+AGG | 0.523819 | 5_1:+52374408 | None:intergenic |
| AAATAATAAGAGAATGAAAG+TGG | 0.526470 | 5_1:-52373485 | Msa0736280:CDS |
| AAACTGATATGGGGACCACC+AGG | 0.527115 | 5_1:-52373688 | Msa0736280:CDS |
| AGCCTTGAACTCAAAGTCAA+AGG | 0.539380 | 5_1:-52374160 | Msa0736280:CDS |
| ATAGATCATGGCTATGGTGA+TGG | 0.541006 | 5_1:-52377983 | None:intergenic |
| TGCAGTATTAGTTGGAGCAC+AGG | 0.546178 | 5_1:+52373597 | None:intergenic |
| GTTTGAGGATTATGTTCAGA+AGG | 0.548737 | 5_1:-52373227 | Msa0736280:CDS |
| CATGCATACAAGATAAGTAA+GGG | 0.553040 | 5_1:-52373271 | Msa0736280:CDS |
| AACTCAAACCGAGTCAAAGT+GGG | 0.557349 | 5_1:-52377749 | Msa0736280:CDS |
| TACGGGTACGGGATGAGTAA+CGG | 0.559306 | 5_1:+52377788 | None:intergenic |
| ATATGGGGACCACCAGGGAC+AGG | 0.561447 | 5_1:-52373682 | Msa0736280:CDS |
| AGAAGAGTAGAAATGGAAGT+GGG | 0.561454 | 5_1:-52375358 | Msa0736280:CDS |
| ATTAACATAGGCAATATGGT+AGG | 0.576989 | 5_1:+52374332 | None:intergenic |
| TAGTCGATAGATCATGGCTA+TGG | 0.583469 | 5_1:-52377989 | None:intergenic |
| AAACTCAAACCGAGTCAAAG+TGG | 0.586565 | 5_1:-52377750 | Msa0736280:CDS |
| CGTGTTTCCTCAAACAATAG+AGG | 0.588095 | 5_1:+52374615 | None:intergenic |
| TTCATTGAGAACATCCTCGA+GGG | 0.591146 | 5_1:+52375307 | None:intergenic |
| CAAGTTGAAATCAAGAACAT+TGG | 0.591895 | 5_1:-52373620 | Msa0736280:CDS |
| AGGATTATGTTCAGAAGGCA+CGG | 0.592537 | 5_1:-52373222 | Msa0736280:CDS |
| TTTGGGTATGAGTTCAGGGT+GGG | 0.598074 | 5_1:-52377824 | Msa0736280:CDS |
| AGAAAGATATCTTCAAGACC+TGG | 0.599408 | 5_1:+52373454 | None:intergenic |
| TTAACATAGGCAATATGGTA+GGG | 0.609308 | 5_1:+52374333 | None:intergenic |
| TAATACTGCAGTGTTGCAAG+TGG | 0.613483 | 5_1:-52373584 | Msa0736280:CDS |
| CCATATTGCCTATGTTAATG+GGG | 0.615680 | 5_1:-52374328 | Msa0736280:CDS |
| TGAAAATCTTTACGAAGACA+AGG | 0.616290 | 5_1:-52375288 | Msa0736280:intron |
| GAATGAATCCCAACAAGATG+CGG | 0.631351 | 5_1:-52373755 | Msa0736280:CDS |
| CAGTGTTGCAAGTGGCAACA+AGG | 0.635731 | 5_1:-52373576 | Msa0736280:CDS |
| TTGGTTCGGATGAGTACTCG+CGG | 0.642896 | 5_1:-52377705 | Msa0736280:CDS |
| TGTACTTTCTTGGACCCTCG+AGG | 0.647281 | 5_1:-52375321 | Msa0736280:CDS |
| GCTAATACCAAACTGATATG+GGG | 0.655141 | 5_1:-52373697 | Msa0736280:CDS |
| TGGTTCGGATGAGTACTCGC+GGG | 0.660199 | 5_1:-52377704 | Msa0736280:intron |
| ATGCATACAAGATAAGTAAG+GGG | 0.667893 | 5_1:-52373270 | Msa0736280:CDS |
| GTTTGGGTATGAGTTCAGGG+TGG | 0.668065 | 5_1:-52377825 | Msa0736280:CDS |
| ACTCAAACCGAGTCAAAGTG+GGG | 0.677389 | 5_1:-52377748 | Msa0736280:CDS |
| AACTGATATGGGGACCACCA+GGG | 0.682358 | 5_1:-52373687 | Msa0736280:CDS |
| TTTCATTGAGAACATCCTCG+AGG | 0.686631 | 5_1:+52375306 | None:intergenic |
| ATAATGCTTGTATTTCAGAG+TGG | 0.690857 | 5_1:-52373859 | Msa0736280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATTTTCATATATTTTT+TGG | + | chr5_1:52373689-52373708 | None:intergenic | 10.0% |
| !!! | TATTTTAATTTGTAACAAAA+CGG | + | chr5_1:52374231-52374250 | None:intergenic | 10.0% |
| !! | CAAAATTAACTATAAAAAAA+TGG | - | chr5_1:52374348-52374367 | Msa0736280:CDS | 10.0% |
| !!! | ATAGAAAAATTTATTTTGAT+TGG | - | chr5_1:52374493-52374512 | Msa0736280:CDS | 10.0% |
| !!! | TAGAAAAATTTATTTTGATT+GGG | - | chr5_1:52374494-52374513 | Msa0736280:CDS | 10.0% |
| !!! | TGAGTTTGTTTTTATATAAA+AGG | - | chr5_1:52373248-52373267 | Msa0736280:CDS | 15.0% |
| !!! | GAGTTTGTTTTTATATAAAA+GGG | - | chr5_1:52373249-52373268 | Msa0736280:CDS | 15.0% |
| !!! | AGTTTGTTTTTATATAAAAG+GGG | - | chr5_1:52373250-52373269 | Msa0736280:CDS | 15.0% |
| !!! | TTTTTTTATGTATTGTATCT+AGG | + | chr5_1:52373470-52373489 | None:intergenic | 15.0% |
| !! | TCTCATTTATAAATTATACA+CGG | + | chr5_1:52373785-52373804 | None:intergenic | 15.0% |
| !!! | ATTTTAATTTGTAACAAAAC+GGG | + | chr5_1:52374230-52374249 | None:intergenic | 15.0% |
| !!! | AAATCATGATTTTTTTTGTT+TGG | - | chr5_1:52374294-52374313 | Msa0736280:CDS | 15.0% |
| !!! | GTTTTTAAAAGAGAAAATAT+AGG | - | chr5_1:52374590-52374609 | Msa0736280:CDS | 15.0% |
| !!! | TTTTAAAAGAGAAAAAATAG+AGG | - | chr5_1:52374812-52374831 | Msa0736280:intron | 15.0% |
| !! | TTTAAAAGAGAAAAAATAGA+GGG | - | chr5_1:52374813-52374832 | Msa0736280:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr5_1:52375075-52375094 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATTATTGCAT+TGG | + | chr5_1:52375115-52375134 | None:intergenic | 15.0% |
| !!! | TTTTAAAAGTAGTAATACTT+TGG | + | chr5_1:52375179-52375198 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr5_1:52375206-52375225 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr5_1:52375205-52375224 | Msa0736280:intron | 15.0% |
| !! | AAAAAAAAAAACTGTAGAAT+AGG | - | chr5_1:52375481-52375500 | Msa0736280:intron | 15.0% |
| !!! | AATCATTATTGAGATTTTAA+CGG | + | chr5_1:52375972-52375991 | None:intergenic | 15.0% |
| !!! | ATTTTGTTATGGATAAAAAT+AGG | - | chr5_1:52377817-52377836 | Msa0736280:CDS | 15.0% |
| !!! | GTTTGTTTTTATATAAAAGG+GGG | - | chr5_1:52373251-52373270 | Msa0736280:CDS | 20.0% |
| !!! | TAAAATGATTTTCTACATTC+AGG | - | chr5_1:52373277-52373296 | Msa0736280:CDS | 20.0% |
| !! | TATTATATCCTTTCAAAGAA+TGG | + | chr5_1:52373610-52373629 | None:intergenic | 20.0% |
| !!! | TGACAAAAAAAAAAAAGCAT+AGG | + | chr5_1:52373908-52373927 | None:intergenic | 20.0% |
| !! | AACCAATACTTAAAAAAACA+CGG | + | chr5_1:52373977-52373996 | None:intergenic | 20.0% |
| !! | TTTAAAAGAGAAAATATAGG+AGG | - | chr5_1:52374593-52374612 | Msa0736280:CDS | 20.0% |
| !! | AATGACTACTCAAAAAATTA+AGG | - | chr5_1:52374651-52374670 | Msa0736280:CDS | 20.0% |
| !! | ATGACTACTCAAAAAATTAA+GGG | - | chr5_1:52374652-52374671 | Msa0736280:CDS | 20.0% |
| !!! | ATTAAGTTAGTGTGTTTTAT+CGG | - | chr5_1:52374768-52374787 | Msa0736280:intron | 20.0% |
| !! | ACGTGTTAAAAAATTAAGAA+GGG | - | chr5_1:52374875-52374894 | Msa0736280:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr5_1:52375196-52375215 | Msa0736280:intron | 20.0% |
| !! | AATGCAATGATTAAAAGAAA+GGG | + | chr5_1:52375244-52375263 | None:intergenic | 20.0% |
| !! | AAATGCAATGATTAAAAGAA+AGG | + | chr5_1:52375245-52375264 | None:intergenic | 20.0% |
| !! | TAACACTTCTATAAAATTGT+AGG | - | chr5_1:52375367-52375386 | Msa0736280:CDS | 20.0% |
| !! | AACACTTCTATAAAATTGTA+GGG | - | chr5_1:52375368-52375387 | Msa0736280:CDS | 20.0% |
| !! | ATACACAATGTAATAGTAAA+TGG | + | chr5_1:52375695-52375714 | None:intergenic | 20.0% |
| !! | AATGATTGTTTAGCAAATAA+TGG | - | chr5_1:52375748-52375767 | Msa0736280:intron | 20.0% |
| !! | TTATAGATATTGTACTTTCT+TGG | - | chr5_1:52375798-52375817 | Msa0736280:intron | 20.0% |
| !!! | ATTTTTTGCAACTACTAAAA+AGG | + | chr5_1:52376084-52376103 | None:intergenic | 20.0% |
| !! | CAAAAGCTTCTTAAATTTAT+TGG | - | chr5_1:52376151-52376170 | Msa0736280:intron | 20.0% |
| !! | CTAATCATTCAAATGTTATA+AGG | + | chr5_1:52376389-52376408 | None:intergenic | 20.0% |
| !!! | TTATTGCTATTACATACATT+AGG | - | chr5_1:52376737-52376756 | Msa0736280:intron | 20.0% |
| !!! | TTTCTGTGTATTATTTTTCA+TGG | + | chr5_1:52376899-52376918 | None:intergenic | 20.0% |
| !!! | AAACTTTTTCAATAATGTTG+AGG | + | chr5_1:52377002-52377021 | None:intergenic | 20.0% |
| !!! | ACCTTTATTTGATATAATAC+TGG | - | chr5_1:52377075-52377094 | Msa0736280:intron | 20.0% |
| !! | TCCAGTATTATATCAAATAA+AGG | + | chr5_1:52377079-52377098 | None:intergenic | 20.0% |
| !! | TTTCAATTATTATGCAAGTA+TGG | - | chr5_1:52377179-52377198 | Msa0736280:intron | 20.0% |
| !! | TATTTAGCTGCAAAAAAAAA+AGG | + | chr5_1:52377236-52377255 | None:intergenic | 20.0% |
| !! | AAATAATAAGAGAATGAAAG+TGG | - | chr5_1:52377644-52377663 | Msa0736280:intron | 20.0% |
| !! | TATGATTTGCACAACAATAT+TGG | - | chr5_1:52373533-52373552 | Msa0736280:CDS | 25.0% |
| !! | TTTTATAGCCATTCTTTGAA+AGG | - | chr5_1:52373599-52373618 | Msa0736280:CDS | 25.0% |
| ! | CTTATTTGTGATCATTCAAT+TGG | - | chr5_1:52373832-52373851 | Msa0736280:CDS | 25.0% |
| ! | ACCAATACTTAAAAAAACAC+GGG | + | chr5_1:52373976-52373995 | None:intergenic | 25.0% |
| !!! | CCTAATTTCTTTTAAAGAGA+TGG | + | chr5_1:52374206-52374225 | None:intergenic | 25.0% |
| !! | CCATCTCTTTAAAAGAAATT+AGG | - | chr5_1:52374203-52374222 | Msa0736280:CDS | 25.0% |
| ! | TGACTACTCAAAAAATTAAG+GGG | - | chr5_1:52374653-52374672 | Msa0736280:CDS | 25.0% |
| ! | GTTGAAACAAAAGACATAAA+AGG | - | chr5_1:52374838-52374857 | Msa0736280:intron | 25.0% |
| ! | GACGTGTTAAAAAATTAAGA+AGG | - | chr5_1:52374874-52374893 | Msa0736280:intron | 25.0% |
| ! | CGTGTTAAAAAATTAAGAAG+GGG | - | chr5_1:52374876-52374895 | Msa0736280:intron | 25.0% |
| ! | AATGATTAAAAGAAAGGGAA+TGG | + | chr5_1:52375239-52375258 | None:intergenic | 25.0% |
| ! | TTCCTAATAGCGATAATAAT+AGG | - | chr5_1:52375405-52375424 | Msa0736280:intron | 25.0% |
| ! | TTCCTATTATTATCGCTATT+AGG | + | chr5_1:52375410-52375429 | None:intergenic | 25.0% |
| ! | ATAGGAATATGAAAAAACAC+TGG | - | chr5_1:52375423-52375442 | Msa0736280:intron | 25.0% |
| ! | GTTAATGCATGAAAATGAAA+AGG | - | chr5_1:52375445-52375464 | Msa0736280:intron | 25.0% |
| !!! | AGCTTTTGAGTAAATATGAT+GGG | + | chr5_1:52376139-52376158 | None:intergenic | 25.0% |
| !!! | AAGCTTTTGAGTAAATATGA+TGG | + | chr5_1:52376140-52376159 | None:intergenic | 25.0% |
| ! | AAAGTTTAGATATGCTTTCT+GGG | + | chr5_1:52376345-52376364 | None:intergenic | 25.0% |
| ! | AAAAGTTTAGATATGCTTTC+TGG | + | chr5_1:52376346-52376365 | None:intergenic | 25.0% |
| ! | ATCATTCAAATGTTATAAGG+TGG | + | chr5_1:52376386-52376405 | None:intergenic | 25.0% |
| !! | TTTTATTCCTCTATTGTTTG+AGG | - | chr5_1:52376507-52376526 | Msa0736280:intron | 25.0% |
| !! | TTCAAGTCATTTAAGCTTTT+TGG | + | chr5_1:52376763-52376782 | None:intergenic | 25.0% |
| !!! | ATTTTTTACCCCATTAACAT+AGG | + | chr5_1:52376812-52376831 | None:intergenic | 25.0% |
| !! | GGGGTAAAAAATATATTTTC+TGG | - | chr5_1:52376820-52376839 | Msa0736280:intron | 25.0% |
| ! | GTAATTCTTACATTGAGATT+AGG | + | chr5_1:52377030-52377049 | None:intergenic | 25.0% |
| ! | ATTTCTCAATGCATACTTTA+TGG | - | chr5_1:52377101-52377120 | Msa0736280:intron | 25.0% |
| ! | TCCTAGTAAACAATATTTCT+TGG | - | chr5_1:52377779-52377798 | Msa0736280:CDS | 25.0% |
| ! | TCCAAGAAATATTGTTTACT+AGG | + | chr5_1:52377783-52377802 | None:intergenic | 25.0% |
| !! | ATCCATAACAAAATCCTTTT+TGG | + | chr5_1:52377811-52377830 | None:intergenic | 25.0% |
| ! | TTTTCCCCGATTTCAAAATA+CGG | + | chr5_1:52373362-52373381 | None:intergenic | 30.0% |
| AAAAGCAGTCAAATTGAGTT+TGG | - | chr5_1:52373405-52373424 | Msa0736280:CDS | 30.0% | |
| TTGTTGTGCAAATCATACAT+GGG | + | chr5_1:52373530-52373549 | None:intergenic | 30.0% | |
| ATTGTTGTGCAAATCATACA+TGG | + | chr5_1:52373531-52373550 | None:intergenic | 30.0% | |
| !!! | TCCCGTGTTTTTTTAAGTAT+TGG | - | chr5_1:52373972-52373991 | Msa0736280:intron | 30.0% |
| AAAAGAGAAAATATAGGAGG+AGG | - | chr5_1:52374596-52374615 | Msa0736280:CDS | 30.0% | |
| ! | AAGGGGTAAGATTGTATTTT+TGG | - | chr5_1:52374670-52374689 | Msa0736280:CDS | 30.0% |
| AAAAGAGAAAAAATAGAGGG+AGG | - | chr5_1:52374816-52374835 | Msa0736280:intron | 30.0% | |
| ! | AAGGGGTAAGATTGTATTTT+TGG | - | chr5_1:52374670-52374689 | Msa0736280:CDS | 30.0% |
| ATTGCATTGGAAACTGAAAA+TGG | + | chr5_1:52375102-52375121 | None:intergenic | 30.0% | |
| ! | TATTAATTGGAGGGTACAAT+TGG | + | chr5_1:52375141-52375160 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr5_1:52375287-52375306 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr5_1:52375288-52375307 | Msa0736280:intron | 30.0% |
| ! | TCTTTTCATGTGTACTTGAA+AGG | - | chr5_1:52375620-52375639 | Msa0736280:intron | 30.0% |
| AAACAGTTGAAGTATATGTC+CGG | + | chr5_1:52375651-52375670 | None:intergenic | 30.0% | |
| AAATGGAACCACAAATGTTA+AGG | + | chr5_1:52375678-52375697 | None:intergenic | 30.0% | |
| ! | ATAATGGAGAAGAGTAGAAA+TGG | - | chr5_1:52375764-52375783 | Msa0736280:intron | 30.0% |
| TGAAAATCTTTACGAAGACA+AGG | - | chr5_1:52375841-52375860 | Msa0736280:intron | 30.0% | |
| TCACATTGAAAAAGTGAACT+TGG | - | chr5_1:52375888-52375907 | Msa0736280:intron | 30.0% | |
| GAACAAAACTAACAATGAAG+TGG | + | chr5_1:52376016-52376035 | None:intergenic | 30.0% | |
| AAGCCTGAAAAAAGATTGAT+CGG | + | chr5_1:52376251-52376270 | None:intergenic | 30.0% | |
| GAAATTATTGTCGCTCTATT+GGG | + | chr5_1:52376288-52376307 | None:intergenic | 30.0% | |
| TGAAATTATTGTCGCTCTAT+TGG | + | chr5_1:52376289-52376308 | None:intergenic | 30.0% | |
| ATAGAGCGACAATAATTTCA+AGG | - | chr5_1:52376289-52376308 | Msa0736280:intron | 30.0% | |
| ! | TGTGAAAATTGTTTTCTCTC+AGG | - | chr5_1:52376435-52376454 | Msa0736280:intron | 30.0% |
| GAATCTGATAGAGATGAAAA+TGG | - | chr5_1:52376685-52376704 | Msa0736280:intron | 30.0% | |
| TTAACATAGGCAATATGGTA+GGG | + | chr5_1:52376799-52376818 | None:intergenic | 30.0% | |
| ATTAACATAGGCAATATGGT+AGG | + | chr5_1:52376800-52376819 | None:intergenic | 30.0% | |
| TACCATATTGCCTATGTTAA+TGG | - | chr5_1:52376799-52376818 | Msa0736280:intron | 30.0% | |
| ACCATATTGCCTATGTTAAT+GGG | - | chr5_1:52376800-52376819 | Msa0736280:intron | 30.0% | |
| TGACAACAAATGTTCGTATT+TGG | - | chr5_1:52376944-52376963 | Msa0736280:intron | 30.0% | |
| CTGAAATACAAGCATTATAC+AGG | + | chr5_1:52377268-52377287 | None:intergenic | 30.0% | |
| ATAATGCTTGTATTTCAGAG+TGG | - | chr5_1:52377270-52377289 | Msa0736280:intron | 30.0% | |
| ATGCTAATACCAAACTGATA+TGG | - | chr5_1:52377430-52377449 | Msa0736280:intron | 30.0% | |
| TGCTAATACCAAACTGATAT+GGG | - | chr5_1:52377431-52377450 | Msa0736280:intron | 30.0% | |
| ! | CAAGTTGAAATCAAGAACAT+TGG | - | chr5_1:52377509-52377528 | Msa0736280:intron | 30.0% |
| ! | TTAAGTGACATTGTGCTATT+TGG | - | chr5_1:52377621-52377640 | Msa0736280:intron | 30.0% |
| ! | GTCCAAAAAGGATTTTGTTA+TGG | - | chr5_1:52377806-52377825 | Msa0736280:CDS | 30.0% |
| TCATGCATACAAGATAAGTA+AGG | - | chr5_1:52377857-52377876 | Msa0736280:intron | 30.0% | |
| CATGCATACAAGATAAGTAA+GGG | - | chr5_1:52377858-52377877 | Msa0736280:intron | 30.0% | |
| ATGCATACAAGATAAGTAAG+GGG | - | chr5_1:52377859-52377878 | Msa0736280:intron | 30.0% | |
| AATCACTAAGCTATACCAAT+TGG | - | chr5_1:52377935-52377954 | Msa0736280:intron | 30.0% | |
| ! | TTTTGTCATTCTCAACCAAT+TGG | + | chr5_1:52377953-52377972 | None:intergenic | 30.0% |
| TGTGTGACTGAAATGAGTTA+TGG | - | chr5_1:52373223-52373242 | Msa0736280:CDS | 35.0% | |
| TTCTACATTCAGGACAAGTT+TGG | - | chr5_1:52373287-52373306 | Msa0736280:CDS | 35.0% | |
| TCTACATTCAGGACAAGTTT+GGG | - | chr5_1:52373288-52373307 | Msa0736280:CDS | 35.0% | |
| TTTCCCCGATTTCAAAATAC+GGG | + | chr5_1:52373361-52373380 | None:intergenic | 35.0% | |
| CAGTCAAATTGAGTTTGGTT+CGG | - | chr5_1:52373410-52373429 | Msa0736280:CDS | 35.0% | |
| GTTGAAGCAAAAGACACAAA+AGG | - | chr5_1:52374618-52374637 | Msa0736280:CDS | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr5_1:52375049-52375068 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr5_1:52375150-52375169 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr5_1:52375154-52375173 | None:intergenic | 35.0% |
| GGACATATACTTCAACTGTT+TGG | - | chr5_1:52375650-52375669 | Msa0736280:intron | 35.0% | |
| GTTTGGTACCTTAACATTTG+TGG | - | chr5_1:52375667-52375686 | Msa0736280:intron | 35.0% | |
| AGAAGAGTAGAAATGGAAGT+GGG | - | chr5_1:52375771-52375790 | Msa0736280:intron | 35.0% | |
| TCCTGATATGTTTGTGTGAT+CGG | + | chr5_1:52376187-52376206 | None:intergenic | 35.0% | |
| !!! | CTTCCGATCAATCTTTTTTC+AGG | - | chr5_1:52376245-52376264 | Msa0736280:intron | 35.0% |
| GATTTATCTTCAAGCTTGTC+TGG | - | chr5_1:52376541-52376560 | Msa0736280:intron | 35.0% | |
| TTCAGTTCCATCATACCATA+TGG | - | chr5_1:52376647-52376666 | Msa0736280:intron | 35.0% | |
| GAAAATTATGAACCTGCATC+AGG | - | chr5_1:52376709-52376728 | Msa0736280:intron | 35.0% | |
| CCATATTGCCTATGTTAATG+GGG | - | chr5_1:52376801-52376820 | Msa0736280:intron | 35.0% | |
| ATCTTCCAAATGCATGAAGA+TGG | - | chr5_1:52376858-52376877 | Msa0736280:intron | 35.0% | |
| AACATCCATCTTCATGCATT+TGG | + | chr5_1:52376866-52376885 | None:intergenic | 35.0% | |
| GCTAATACCAAACTGATATG+GGG | - | chr5_1:52377432-52377451 | Msa0736280:intron | 35.0% | |
| TCACTTGACGATGATACATA+TGG | - | chr5_1:52377597-52377616 | Msa0736280:intron | 35.0% | |
| ATGAAAGTGGAAAGTTATCC+AGG | - | chr5_1:52377657-52377676 | Msa0736280:intron | 35.0% | |
| AGAAAGATATCTTCAAGACC+TGG | + | chr5_1:52377678-52377697 | None:intergenic | 35.0% | |
| TTTCTTGGAGATGTCCAAAA+AGG | - | chr5_1:52377794-52377813 | Msa0736280:CDS | 35.0% | |
| AAGATAAGTAAGGGGAACTA+TGG | - | chr5_1:52377867-52377886 | Msa0736280:intron | 35.0% | |
| GTTTGAGGATTATGTTCAGA+AGG | - | chr5_1:52377902-52377921 | Msa0736280:intron | 35.0% | |
| ACAAGTTTGGGTATGAGTTC+AGG | - | chr5_1:52373300-52373319 | Msa0736280:CDS | 40.0% | |
| CAAGTTTGGGTATGAGTTCA+GGG | - | chr5_1:52373301-52373320 | Msa0736280:CDS | 40.0% | |
| CGATTTCAAAATACGGGTAC+GGG | + | chr5_1:52373355-52373374 | None:intergenic | 40.0% | |
| CCGATTTCAAAATACGGGTA+CGG | + | chr5_1:52373356-52373375 | None:intergenic | 40.0% | |
| !!! | CCGTACCCGTATTTTGAAAT+CGG | - | chr5_1:52373353-52373372 | Msa0736280:CDS | 40.0% |
| !!! | CGTACCCGTATTTTGAAATC+GGG | - | chr5_1:52373354-52373373 | Msa0736280:CDS | 40.0% |
| !!! | GTACCCGTATTTTGAAATCG+GGG | - | chr5_1:52373355-52373374 | Msa0736280:CDS | 40.0% |
| AAACTCAAACCGAGTCAAAG+TGG | - | chr5_1:52373379-52373398 | Msa0736280:CDS | 40.0% | |
| AACTCAAACCGAGTCAAAGT+GGG | - | chr5_1:52373380-52373399 | Msa0736280:CDS | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr5_1:52375292-52375311 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr5_1:52375151-52375170 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5_1:52375292-52375311 | Msa0736280:CDS | 40.0% |
| !! | TGAGAAGAGGGTACTTTCAT+AGG | + | chr5_1:52375538-52375557 | None:intergenic | 40.0% |
| GAGAAGAGTAGAAATGGAAG+TGG | - | chr5_1:52375770-52375789 | Msa0736280:intron | 40.0% | |
| TTCATTGAGAACATCCTCGA+GGG | + | chr5_1:52375825-52375844 | None:intergenic | 40.0% | |
| TTTCATTGAGAACATCCTCG+AGG | + | chr5_1:52375826-52375845 | None:intergenic | 40.0% | |
| ACCGATCACACAAACATATC+AGG | - | chr5_1:52376183-52376202 | Msa0736280:intron | 40.0% | |
| !!! | TTTTTCAGGCTTTAGCAACC+TGG | - | chr5_1:52376259-52376278 | Msa0736280:intron | 40.0% |
| !! | TTTTCAGGCTTTAGCAACCT+GGG | - | chr5_1:52376260-52376279 | Msa0736280:intron | 40.0% |
| !! | GTTGCTGACTTAAATGTCTC+TGG | + | chr5_1:52376472-52376491 | None:intergenic | 40.0% |
| CGTGTTTCCTCAAACAATAG+AGG | + | chr5_1:52376517-52376536 | None:intergenic | 40.0% | |
| GTTCCATCATACCATATGGT+TGG | - | chr5_1:52376651-52376670 | Msa0736280:intron | 40.0% | |
| TCTCCAACCATATGGTATGA+TGG | + | chr5_1:52376657-52376676 | None:intergenic | 40.0% | |
| AGTTGTACTCTCCAACCATA+TGG | + | chr5_1:52376665-52376684 | None:intergenic | 40.0% | |
| CCCCATTAACATAGGCAATA+TGG | + | chr5_1:52376804-52376823 | None:intergenic | 40.0% | |
| AGCCTTGAACTCAAAGTCAA+AGG | - | chr5_1:52376969-52376988 | Msa0736280:intron | 40.0% | |
| GCCTTGAACTCAAAGTCAAA+GGG | - | chr5_1:52376970-52376989 | Msa0736280:intron | 40.0% | |
| ! | ACCCTTTGACTTTGAGTTCA+AGG | + | chr5_1:52376974-52376993 | None:intergenic | 40.0% |
| GAATGAATCCCAACAAGATG+CGG | - | chr5_1:52377374-52377393 | Msa0736280:intron | 40.0% | |
| TGCAACACTGCAGTATTAGT+TGG | + | chr5_1:52377543-52377562 | None:intergenic | 40.0% | |
| TAATACTGCAGTGTTGCAAG+TGG | - | chr5_1:52377545-52377564 | Msa0736280:intron | 40.0% | |
| GGAACTATGGTCTGATTATG+AGG | - | chr5_1:52377880-52377899 | Msa0736280:intron | 40.0% | |
| TGGTCTGATTATGAGGTTTG+AGG | - | chr5_1:52377887-52377906 | Msa0736280:intron | 40.0% | |
| AGGATTATGTTCAGAAGGCA+CGG | - | chr5_1:52377907-52377926 | Msa0736280:intron | 40.0% | |
| TTTGGGTATGAGTTCAGGGT+GGG | - | chr5_1:52373305-52373324 | Msa0736280:CDS | 45.0% | |
| ! | GGGATGAGTAACGGAGATAT+AGG | + | chr5_1:52373335-52373354 | None:intergenic | 45.0% |
| ACTCAAACCGAGTCAAAGTG+GGG | - | chr5_1:52373381-52373400 | Msa0736280:CDS | 45.0% | |
| !! | GCTTTTTCCCCACTTTGACT+CGG | + | chr5_1:52373391-52373410 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr5_1:52375291-52375310 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5_1:52375291-52375310 | Msa0736280:CDS | 45.0% |
| GAAAGTAGCGCATGAGAAGA+GGG | + | chr5_1:52375550-52375569 | None:intergenic | 45.0% | |
| TGAAAGTAGCGCATGAGAAG+AGG | + | chr5_1:52375551-52375570 | None:intergenic | 45.0% | |
| GTGTACTTGAAAGGTCGAAC+CGG | - | chr5_1:52375629-52375648 | Msa0736280:intron | 45.0% | |
| !!! | CAGATCGTTTTTTTCCCCAG+CGG | - | chr5_1:52376215-52376234 | Msa0736280:intron | 45.0% |
| ATCGGAAGATAGTTTCCGCT+GGG | + | chr5_1:52376233-52376252 | None:intergenic | 45.0% | |
| GCAATAAGATCTCCTGATGC+AGG | + | chr5_1:52376724-52376743 | None:intergenic | 45.0% | |
| GCTTGTAACCGCATCTTGTT+GGG | + | chr5_1:52377385-52377404 | None:intergenic | 45.0% | |
| AGCTTGTAACCGCATCTTGT+TGG | + | chr5_1:52377386-52377405 | None:intergenic | 45.0% | |
| GGTTACAAGCTGTGCTAGTA+TGG | - | chr5_1:52377395-52377414 | Msa0736280:intron | 45.0% | |
| !! | TTTGTTTTTCCTGTCCCTGG+TGG | + | chr5_1:52377459-52377478 | None:intergenic | 45.0% |
| !!! | GACTTTGTTTTTCCTGTCCC+TGG | + | chr5_1:52377462-52377481 | None:intergenic | 45.0% |
| TGCAGTATTAGTTGGAGCAC+AGG | + | chr5_1:52377535-52377554 | None:intergenic | 45.0% | |
| TCATGCAGTGCTATGCTGAA+TGG | - | chr5_1:52377718-52377737 | Msa0736280:CDS | 45.0% | |
| !! | ATGAATAATATAAAAAATAT+AGG | + | chr5_1:52374012-52374031 | None:intergenic | 5.0% |
| GTTTGGGTATGAGTTCAGGG+TGG | - | chr5_1:52373304-52373323 | Msa0736280:CDS | 50.0% | |
| TACGGGTACGGGATGAGTAA+CGG | + | chr5_1:52373344-52373363 | None:intergenic | 50.0% | |
| !! | TTGGTTCGGATGAGTACTCG+CGG | - | chr5_1:52373424-52373443 | Msa0736280:CDS | 50.0% |
| TGTACTTTCTTGGACCCTCG+AGG | - | chr5_1:52375808-52375827 | Msa0736280:intron | 50.0% | |
| TCGGAAGATAGTTTCCGCTG+GGG | + | chr5_1:52376232-52376251 | None:intergenic | 50.0% | |
| GATCGGAAGATAGTTTCCGC+TGG | + | chr5_1:52376234-52376253 | None:intergenic | 50.0% | |
| TGGTGGTCCCCATATCAGTT+TGG | + | chr5_1:52377442-52377461 | None:intergenic | 50.0% | |
| AAACTGATATGGGGACCACC+AGG | - | chr5_1:52377441-52377460 | Msa0736280:intron | 50.0% | |
| AACTGATATGGGGACCACCA+GGG | - | chr5_1:52377442-52377461 | Msa0736280:intron | 50.0% | |
| CAGTGTTGCAAGTGGCAACA+AGG | - | chr5_1:52377553-52377572 | Msa0736280:intron | 50.0% | |
| ! | TGGTTCGGATGAGTACTCGC+GGG | - | chr5_1:52373425-52373444 | Msa0736280:CDS | 55.0% |
| GGATGAGTACTCGCGGGTAT+GGG | - | chr5_1:52373431-52373450 | Msa0736280:CDS | 55.0% | |
| CGGATGAGTACTCGCGGGTA+TGG | - | chr5_1:52373430-52373449 | Msa0736280:CDS | 60.0% | |
| ATATGGGGACCACCAGGGAC+AGG | - | chr5_1:52377447-52377466 | Msa0736280:intron | 60.0% | |
| TGTCGCTCTATTGGGCGCCC+AGG | + | chr5_1:52376280-52376299 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 52373153 | 52377998 | 52373153 | ID=Msa0736280;Name=Msa0736280 |
| chr5_1 | mRNA | 52373153 | 52377998 | 52373153 | ID=Msa0736280-mRNA-1;Parent=Msa0736280;Name=Msa0736280-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0.25|0.4|0.6|1|1|5|0|539 |
| chr5_1 | exon | 52377961 | 52377998 | 52377961 | ID=Msa0736280-mRNA-1:exon:14791;Parent=Msa0736280-mRNA-1 |
| chr5_1 | exon | 52377705 | 52377852 | 52377705 | ID=Msa0736280-mRNA-1:exon:14790;Parent=Msa0736280-mRNA-1 |
| chr5_1 | exon | 52375289 | 52375390 | 52375289 | ID=Msa0736280-mRNA-1:exon:14789;Parent=Msa0736280-mRNA-1 |
| chr5_1 | exon | 52374113 | 52374694 | 52374113 | ID=Msa0736280-mRNA-1:exon:14788;Parent=Msa0736280-mRNA-1 |
| chr5_1 | exon | 52373153 | 52373902 | 52373153 | ID=Msa0736280-mRNA-1:exon:14787;Parent=Msa0736280-mRNA-1 |
| chr5_1 | CDS | 52377961 | 52377998 | 52377961 | ID=Msa0736280-mRNA-1:cds;Parent=Msa0736280-mRNA-1 |
| chr5_1 | CDS | 52377705 | 52377852 | 52377705 | ID=Msa0736280-mRNA-1:cds;Parent=Msa0736280-mRNA-1 |
| chr5_1 | CDS | 52375289 | 52375390 | 52375289 | ID=Msa0736280-mRNA-1:cds;Parent=Msa0736280-mRNA-1 |
| chr5_1 | CDS | 52374113 | 52374694 | 52374113 | ID=Msa0736280-mRNA-1:cds;Parent=Msa0736280-mRNA-1 |
| chr5_1 | CDS | 52373153 | 52373902 | 52373153 | ID=Msa0736280-mRNA-1:cds;Parent=Msa0736280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
