AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046670 MtrunA17_Chr3g0113901 97.468 79 0 1 3 81 757 833 4.54e-48 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046670 AT3G56040.1 62.500 80 28 1 2 81 768 845 8.72e-30 110

Find 259 sgRNAs with CRISPR-Local

Find 604 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGCTAGTCCAGCATTTC+TGG 0.108905 1_1:-78939999 None:intergenic
GCAAGTCTCTTTCATTATTA+AGG 0.122176 1_1:+78947942 Msa0046670:three_prime_UTR
ATTTCCTGTAATTATATTAT+TGG 0.163304 1_1:+78947852 Msa0046670:three_prime_UTR
TGGCGACTTACAACAGAAAA+TGG 0.168429 1_1:-78948011 None:intergenic
ATCCTGCTCTTGGTCCTCTT+TGG 0.182867 1_1:+78945839 Msa0046670:five_prime_UTR
GGAAATTCTGGTGGTGGTTT+TGG 0.204275 1_1:+78940214 Msa0046670:five_prime_UTR
GATTGCTAAACCTGAATTAA+TGG 0.243046 1_1:-78947554 None:intergenic
TTCTTGTACTTCAAGTTATA+TGG 0.249345 1_1:+78941837 Msa0046670:five_prime_UTR
AGCTACTGATGTTGTCTTAC+AGG 0.251449 1_1:+78946867 Msa0046670:CDS
ACGTTGCAGTTATCAGATTA+TGG 0.263325 1_1:+78941274 Msa0046670:intron
CTTCTAGGGTTTGCCAGACC+TGG 0.263501 1_1:+78941547 Msa0046670:intron
ATCACTGTTTCCATTAATTC+AGG 0.264551 1_1:+78947544 Msa0046670:three_prime_UTR
GGGCATCGATTCCCAAAATT+TGG 0.269316 1_1:-78941376 None:intergenic
CAGTTATCAGATTATGGTTC+TGG 0.272663 1_1:+78941280 Msa0046670:intron
ATGCATCTCAAGCCGCTCTA+TGG 0.274293 1_1:+78941432 Msa0046670:five_prime_UTR
TACACTGAATTCGACAAGTT+TGG 0.277224 1_1:+78943554 Msa0046670:five_prime_UTR
TAGAGGTTGCAGAGCTCTTT+TGG 0.277245 1_1:+78946389 Msa0046670:five_prime_UTR
AGTGAAAGAAGGCCAAATTT+TGG 0.278373 1_1:+78941364 Msa0046670:five_prime_UTR
TCCTGCTCTTGGTCCTCTTT+GGG 0.282075 1_1:+78945840 Msa0046670:five_prime_UTR
GACAAGTTTGGGATTACTAA+TGG 0.289277 1_1:+78943566 Msa0046670:five_prime_UTR
ACGAACTTGTGAATATTTGA+TGG 0.293728 1_1:-78947983 None:intergenic
TTAGTAGTAGAAATTATTAT+AGG 0.297631 1_1:-78947741 None:intergenic
GATGAGAACTACGTTTATTC+AGG 0.303262 1_1:+78945793 Msa0046670:five_prime_UTR
TTTCCTGTAATTATATTATT+GGG 0.303735 1_1:+78947853 Msa0046670:three_prime_UTR
AGAGAAAACGGTGGTGATTA+TGG 0.310242 1_1:-78939673 None:intergenic
CAAGTCTCTTTCATTATTAA+GGG 0.312635 1_1:+78947943 Msa0046670:three_prime_UTR
CAGCCTCTTGTTCCGGTTGT+CGG 0.319576 1_1:+78942072 Msa0046670:intron
GAGTCGTCCGTGATGGCTTC+TGG 0.322029 1_1:+78940130 Msa0046670:five_prime_UTR
TAACTCAGATCCCTTCGATA+TGG 0.322424 1_1:-78946362 None:intergenic
GACACCTGATGGTGCTCTAT+TGG 0.328369 1_1:+78945473 Msa0046670:intron
ATCCTTCTTCATCCTGCTCT+TGG 0.330716 1_1:+78945829 Msa0046670:five_prime_UTR
GTTAAGAGACCTGGGCTTCC+TGG 0.334728 1_1:-78947429 None:intergenic
CCTGGGTGAAATTTATCCTT+TGG 0.336683 1_1:+78941565 Msa0046670:five_prime_UTR
ATCGACGCTGCGGTTGGATT+CGG 0.338258 1_1:+78940027 Msa0046670:five_prime_UTR
TATTCATCTAGGTGCTATAA+TGG 0.342333 1_1:+78944858 Msa0046670:five_prime_UTR
AGAAATGTCCAGATGGCAAC+TGG 0.346060 1_1:+78943507 Msa0046670:five_prime_UTR
TTTGTATTCAACACCATTCC+TGG 0.348879 1_1:-78944281 None:intergenic
CAACCCAATAATATAATTAC+AGG 0.350203 1_1:-78947856 None:intergenic
GAGACCAGTTTGTATTCTTC+CGG 0.352518 1_1:-78941328 None:intergenic
TATAAGATGTTTGTATTAGC+TGG 0.355473 1_1:-78944203 None:intergenic
CTAATGGATCTCTTCCAAAA+AGG 0.356361 1_1:+78943582 Msa0046670:five_prime_UTR
ACACTGAATTCGACAAGTTT+GGG 0.356446 1_1:+78943555 Msa0046670:five_prime_UTR
AGTTCAACCTTTGCTACATT+AGG 0.361248 1_1:+78947782 Msa0046670:three_prime_UTR
GATTCTGGTAATGGAAATTC+TGG 0.364009 1_1:+78940202 Msa0046670:five_prime_UTR
AGGTCTTATAAGAGATCTTC+AGG 0.365034 1_1:+78941682 Msa0046670:five_prime_UTR
ATTTCTACAATCAAGTTTGC+AGG 0.365245 1_1:+78944172 Msa0046670:intron
TGCGAAACACTCTCTTGGTT+TGG 0.366793 1_1:+78941933 Msa0046670:five_prime_UTR
CTGGGTGAAATTTATCCTTT+GGG 0.366993 1_1:+78941566 Msa0046670:five_prime_UTR
ATTTAAAGTTATTTCACAAC+TGG 0.367767 1_1:-78948066 None:intergenic
ATAAATTATGTAGATCAGTT+TGG 0.370232 1_1:+78944311 Msa0046670:five_prime_UTR
ATCTTCAATTTGTATCCATC+TGG 0.370939 1_1:-78947402 None:intergenic
GAACTTGTCATTATTGCAAC+AGG 0.373163 1_1:-78941876 None:intergenic
ATTTCAATTCATATTCATCT+AGG 0.374107 1_1:+78944847 Msa0046670:five_prime_UTR
ATGATTGAGAAGATGGATTC+TGG 0.376036 1_1:+78940187 Msa0046670:five_prime_UTR
AACAGTGATTCATGTTAAAT+CGG 0.377125 1_1:-78947530 None:intergenic
TTACCATCTGCGGAGCTTGT+TGG 0.380348 1_1:+78944233 Msa0046670:five_prime_UTR
CATGGTTCACAGTTGATGTT+GGG 0.388039 1_1:+78947713 Msa0046670:three_prime_UTR
CAAGAGCATGTGTTGTGTTC+GGG 0.388421 1_1:+78940088 Msa0046670:five_prime_UTR
GTTTGGAGGATCATGAAATT+CGG 0.388697 1_1:+78940242 Msa0046670:five_prime_UTR
CACTTCTTCCTCCTCCTTCA+CGG 0.389307 1_1:+78939472 Msa0046670:five_prime_UTR
TCAAGAGCATGTGTTGTGTT+CGG 0.394898 1_1:+78940087 Msa0046670:five_prime_UTR
CCATCTTCTGCACCGACAAC+CGG 0.396774 1_1:-78942084 None:intergenic
GATTGCATTGGAGGAGTGAT+TGG 0.398968 1_1:+78940313 Msa0046670:five_prime_UTR
GGAACTTATTGTCCAACAAT+TGG 0.403417 1_1:+78941301 Msa0046670:five_prime_UTR
GAGGGAATTGATTGGAGTTA+TGG 0.407417 1_1:+78946766 Msa0046670:CDS
TTTGGAGGATCATGAAATTC+GGG 0.407427 1_1:+78940243 Msa0046670:five_prime_UTR
GTAACCCTCCTGGCCTTAGC+AGG 0.407592 1_1:+78942367 Msa0046670:five_prime_UTR
TGTTGTGTTGTGAGTTAGAA+TGG 0.408933 1_1:-78939587 None:intergenic
CCGGTTGTCGGTGCAGAAGA+TGG 0.414770 1_1:+78942084 Msa0046670:five_prime_UTR
CCGTATTCCCAGTTGCCATC+TGG 0.416223 1_1:-78943515 None:intergenic
ATCACGGAGGGAGGTGAGTC+TGG 0.417202 1_1:-78939891 None:intergenic
ACGGCAGCATTGCAGCAGGC+AGG 0.417616 1_1:-78941637 None:intergenic
CAATAACGACGGACCTGACT+TGG 0.420916 1_1:-78942239 None:intergenic
CCCTGTGCGAAACACTCTCT+TGG 0.421940 1_1:+78941928 Msa0046670:five_prime_UTR
TTGGGAATCGATGCCCCGAC+TGG 0.422601 1_1:+78941383 Msa0046670:five_prime_UTR
GCATCCTGTGACCGTGTCTC+AGG 0.434355 1_1:+78943452 Msa0046670:five_prime_UTR
TTCGCGGCGGAAATTGAATC+CGG 0.435076 1_1:-78939864 None:intergenic
GAATTGGCAGCCTCTTGTTC+CGG 0.436440 1_1:+78942065 Msa0046670:intron
CACTGGGATTACAAGATAGA+AGG 0.441388 1_1:+78947622 Msa0046670:three_prime_UTR
CCAGTTAGATCCGATTGAAA+AGG 0.441754 1_1:+78947576 Msa0046670:three_prime_UTR
TTCTAGGGTTTGCCAGACCT+GGG 0.443387 1_1:+78941548 Msa0046670:intron
GTGCAACTGTGCGCCAAGTC+AGG 0.443469 1_1:+78942226 Msa0046670:five_prime_UTR
TTCAGTCCCTTGAGCAAGCC+TGG 0.446802 1_1:+78942129 Msa0046670:five_prime_UTR
GTCCGTGATGGCTTCTGGTT+CGG 0.447578 1_1:+78940135 Msa0046670:five_prime_UTR
TACAGAGTAAGACGTTTCTT+CGG 0.454471 1_1:+78939968 Msa0046670:five_prime_UTR
TGCATCTCAAGCCGCTCTAT+GGG 0.456669 1_1:+78941433 Msa0046670:five_prime_UTR
CAGCGTCTCTGGTGGCAGAC+TGG 0.457973 1_1:+78944794 Msa0046670:intron
GTTGCTTTATCATGATCGTT+AGG 0.462504 1_1:+78947453 Msa0046670:exon
GGATAAATTTCACCCAGGTC+TGG 0.462592 1_1:-78941560 None:intergenic
CGGAAATTGAATCCGGGAGG+TGG 0.466176 1_1:-78939857 None:intergenic
CCAGATGGCAACTGGGAATA+CGG 0.467549 1_1:+78943515 Msa0046670:five_prime_UTR
CAGAAAGGTCAAGCCCAGTC+GGG 0.468261 1_1:-78941397 None:intergenic
CAGACATCTGATGTGGTTAG+TGG 0.468491 1_1:-78947680 None:intergenic
TTGTATATAATGAGCGGAGA+AGG 0.469118 1_1:+78944996 Msa0046670:five_prime_UTR
GGCGAAGATGATTGAGAAGA+TGG 0.469555 1_1:+78940180 Msa0046670:five_prime_UTR
TCTTCCGGTCAACCAATTGT+TGG 0.474192 1_1:-78941313 None:intergenic
TGGACAGTGGAAGCTGGCAC+TGG 0.475964 1_1:+78947605 Msa0046670:three_prime_UTR
GAGAAGATGGATTCTGGTAA+TGG 0.475984 1_1:+78940193 Msa0046670:five_prime_UTR
CCAGAAATGCTGGACTAGCT+AGG 0.479459 1_1:+78939999 Msa0046670:five_prime_UTR
TTGAGCAAGCCTGGTGGTCA+TGG 0.479896 1_1:+78942138 Msa0046670:five_prime_UTR
AGGTTCTATGATTGCATTGG+AGG 0.481250 1_1:+78940304 Msa0046670:five_prime_UTR
CAAAACGGCAGCATTGCAGC+AGG 0.483983 1_1:-78941641 None:intergenic
GGATGAAGAAGGATAAGAAA+TGG 0.486008 1_1:-78945820 None:intergenic
TGTGGGAGGACTTTGTTGGA+AGG 0.487462 1_1:+78941662 Msa0046670:five_prime_UTR
TGTTGAACGAGGGAATTGAT+TGG 0.487686 1_1:+78946758 Msa0046670:CDS
ATGACAAAGGCATCTTCAAA+TGG 0.489205 1_1:+78942181 Msa0046670:five_prime_UTR
ATTAATAAGAATATAAGAAG+GGG 0.498358 1_1:-78939560 None:intergenic
GGGATCTGAGTTACAAATAG+AGG 0.499477 1_1:+78946372 Msa0046670:five_prime_UTR
TTTGAAGATGCCTTTGTCAT+GGG 0.499681 1_1:-78942178 None:intergenic
ATCAGTTTGGAAGACATTGT+AGG 0.500085 1_1:+78944324 Msa0046670:five_prime_UTR
GGCGACTTACAACAGAAAAT+GGG 0.502318 1_1:-78948010 None:intergenic
GTTATGGTGGAAATGTGTAT+TGG 0.502486 1_1:+78946782 Msa0046670:CDS
GATGAAGAAGAAAATGAAGA+TGG 0.502922 1_1:-78939776 None:intergenic
TCCGATTGAAAAGGGTATGA+TGG 0.503234 1_1:+78947585 Msa0046670:three_prime_UTR
AACCGATCCCTGCTAAGGCC+AGG 0.504929 1_1:-78942375 None:intergenic
GAGAGGTTCTATGATTGCAT+TGG 0.505264 1_1:+78940301 Msa0046670:five_prime_UTR
AACGAAAAGAAAAGAGAAAA+CGG 0.505393 1_1:-78939685 None:intergenic
GGTTCCTCCTCCAGAAATGC+TGG 0.506285 1_1:+78939989 Msa0046670:five_prime_UTR
TTGTCCAACAATTGGTTGAC+CGG 0.510009 1_1:+78941309 Msa0046670:five_prime_UTR
ATCACGGACGACTCCATCTC+CGG 0.510882 1_1:-78940121 None:intergenic
CGGTTGTCGGTGCAGAAGAT+GGG 0.511615 1_1:+78942085 Msa0046670:five_prime_UTR
AGGAAGAAGTGCTTATTAGC+CGG 0.512079 1_1:-78939460 None:intergenic
ACAGGGAAGTGATGTGTTTG+TGG 0.514804 1_1:-78941911 None:intergenic
ATTTCTACTACTAAAATGAC+AGG 0.515642 1_1:+78947750 Msa0046670:three_prime_UTR
GATTTAGTTGATCCTAGCAC+TGG 0.516777 1_1:+78941608 Msa0046670:five_prime_UTR
GGTAATGGAAATTCTGGTGG+TGG 0.517348 1_1:+78940208 Msa0046670:five_prime_UTR
ATTTGAAGATGCCTTTGTCA+TGG 0.517965 1_1:-78942179 None:intergenic
AAGTGAAGTGGAGTGAAGCA+TGG 0.519601 1_1:-78939645 None:intergenic
CTCCTGGCCTTAGCAGGGAT+CGG 0.519753 1_1:+78942373 Msa0046670:five_prime_UTR
GACATTCAAACACATGAACT+TGG 0.521993 1_1:-78948031 None:intergenic
TACAAATTGAAGATCATGCC+AGG 0.523183 1_1:+78947411 Msa0046670:CDS
AGAAGGAATTAATGTACTGA+TGG 0.523885 1_1:+78943481 Msa0046670:five_prime_UTR
AACAAAGTCCTCCCACAAAA+CGG 0.525949 1_1:-78941656 None:intergenic
ACACTCTCTTGGTTTGGAAG+AGG 0.526496 1_1:+78941939 Msa0046670:five_prime_UTR
CAGTTAGATCCGATTGAAAA+GGG 0.526731 1_1:+78947577 Msa0046670:three_prime_UTR
GGAAGAAGTGCTTATTAGCC+GGG 0.528463 1_1:-78939459 None:intergenic
AAATTGAATCCGGGAGGTGG+TGG 0.528692 1_1:-78939854 None:intergenic
AGGATATACCGTGAAGGAGG+AGG 0.531064 1_1:-78939480 None:intergenic
GGGAGAAACTATGCCGGAGA+TGG 0.533169 1_1:+78940108 Msa0046670:five_prime_UTR
ACCAAGAGAGTGTTTCGCAC+AGG 0.533505 1_1:-78941929 None:intergenic
TCATGGTTCACAGTTGATGT+TGG 0.535991 1_1:+78947712 Msa0046670:three_prime_UTR
AAGATCATGCCAGGAAGCCC+AGG 0.536968 1_1:+78947420 Msa0046670:CDS
GATTAATAAGAATATAAGAA+GGG 0.537095 1_1:-78939561 None:intergenic
TCCCAAAGAGGACCAAGAGC+AGG 0.537439 1_1:-78945841 None:intergenic
AAAGCAACGGTTAAGAGACC+TGG 0.537538 1_1:-78947438 None:intergenic
TGTATATAATGAGCGGAGAA+GGG 0.539015 1_1:+78944997 Msa0046670:five_prime_UTR
GCTTGACCTTTCTGAAAGTA+CGG 0.539295 1_1:+78941406 Msa0046670:five_prime_UTR
AGCTACAGATGTAACCCTCC+TGG 0.539348 1_1:+78942357 Msa0046670:five_prime_UTR
CATATGACACCATGACCACC+AGG 0.543397 1_1:-78942147 None:intergenic
TGATTAATAAGAATATAAGA+AGG 0.545450 1_1:-78939562 None:intergenic
GGAATTGATTGGAGTTATGG+TGG 0.547001 1_1:+78946769 Msa0046670:CDS
CACATGCACGAAGTGAAAGA+AGG 0.547067 1_1:+78941353 Msa0046670:five_prime_UTR
CGCAGGCGGCGAGCTTATCA+CGG 0.548045 1_1:-78939907 None:intergenic
ATTGGAAACATGATGTGAAA+AGG 0.548474 1_1:+78946800 Msa0046670:CDS
CAGAAATGCTGGACTAGCTA+GGG 0.548885 1_1:+78940000 Msa0046670:five_prime_UTR
GTATGATGGACAGTGGAAGC+TGG 0.551683 1_1:+78947599 Msa0046670:three_prime_UTR
AGCCGCTCTATGGGGTATAG+AGG 0.552596 1_1:+78941442 Msa0046670:five_prime_UTR
ACTAATATTGTAAAATTGAG+AGG 0.552818 1_1:+78947889 Msa0046670:three_prime_UTR
ATATGTTGATTTACCATCTG+CGG 0.552956 1_1:+78944223 Msa0046670:five_prime_UTR
TACGGTGGTTCCATATCGAA+GGG 0.553092 1_1:+78946352 Msa0046670:five_prime_UTR
TTACGGTGGTTCCATATCGA+AGG 0.553784 1_1:+78946351 Msa0046670:five_prime_UTR
GATGTCTGCTGCGTGAATCA+TGG 0.554272 1_1:+78947695 Msa0046670:three_prime_UTR
GAATTATCACCACCACCTCC+CGG 0.556730 1_1:+78939845 Msa0046670:five_prime_UTR
GGTGAAATTTATCCTTTGGG+AGG 0.556891 1_1:+78941569 Msa0046670:five_prime_UTR
TGGAGACAAGTCTTTACGCC+AGG 0.557037 1_1:+78945051 Msa0046670:five_prime_UTR
GGCTTGCTCAAGGGACTGAA+CGG 0.558446 1_1:-78942126 None:intergenic
ATATCCAATAGAGCACCATC+AGG 0.558512 1_1:-78945477 None:intergenic
CTGGTGGTCATGGTGTCATA+TGG 0.558729 1_1:+78942148 Msa0046670:five_prime_UTR
CATGTATTTGAAGTTCCAGA+TGG 0.559336 1_1:+78947387 Msa0046670:CDS
GACCAAGAGCAGGATGAAGA+AGG 0.559973 1_1:-78945831 None:intergenic
TGTGAATAGTATACCAGGAA+TGG 0.560350 1_1:+78944268 Msa0046670:five_prime_UTR
TGGGAATCGATGCCCCGACT+GGG 0.560943 1_1:+78941384 Msa0046670:five_prime_UTR
TCAGAAAGGTCAAGCCCAGT+CGG 0.562913 1_1:-78941398 None:intergenic
TTGACCGGAAGAATACAAAC+TGG 0.564865 1_1:+78941324 Msa0046670:five_prime_UTR
GAATAAGTTGTTAGAGACGT+TGG 0.565230 1_1:+78940270 Msa0046670:five_prime_UTR
ATTGCATTGGAGGAGTGATT+GGG 0.565442 1_1:+78940314 Msa0046670:five_prime_UTR
GCAGGGATCGGTTTGCGTCA+AGG 0.565919 1_1:+78942385 Msa0046670:five_prime_UTR
CTTGTCGTTGAGAGTATCGC+AGG 0.568727 1_1:-78939924 None:intergenic
TGCACCTGAGACACGGTCAC+AGG 0.569781 1_1:-78943456 None:intergenic
CCAAGAGAGTGTTTCGCACA+GGG 0.570420 1_1:-78941928 None:intergenic
TATCAAGAGAAGATGCTATG+AGG 0.574220 1_1:-78939500 None:intergenic
AGGTGAGTCTGGTGATTTCG+CGG 0.574340 1_1:-78939880 None:intergenic
ACGCAAACCGATCCCTGCTA+AGG 0.575284 1_1:-78942380 None:intergenic
TAGTCCAGCATTTCTGGAGG+AGG 0.575790 1_1:-78939993 None:intergenic
AAGAATGTGAATAGTATACC+AGG 0.575840 1_1:+78944263 Msa0046670:five_prime_UTR
TTGAAGTGTTTGGTAGCTGC+GGG 0.576265 1_1:+78940064 Msa0046670:five_prime_UTR
AGGTGCTATAATGGTGTGGA+AGG 0.577188 1_1:+78944867 Msa0046670:five_prime_UTR
TCGCGGCGGAAATTGAATCC+GGG 0.579207 1_1:-78939863 None:intergenic
TGCAGAAGATGGGCAGTGGT+TGG 0.579965 1_1:+78942095 Msa0046670:five_prime_UTR
GTGCCTGTATAACAGAAACT+GGG 0.580176 1_1:+78943425 Msa0046670:intron
CTTCTGTTGCACCTGAGACA+CGG 0.581858 1_1:-78943463 None:intergenic
CATACTCCGTACTTTCAGAA+AGG 0.581877 1_1:-78941412 None:intergenic
AAAACAACCTAATGTAGCAA+AGG 0.581998 1_1:-78947789 None:intergenic
TGGAAACTTGCCCATGACAA+AGG 0.584706 1_1:+78942168 Msa0046670:five_prime_UTR
ATGACCACCAGGCTTGCTCA+AGG 0.585469 1_1:-78942136 None:intergenic
GATCGGTTTGCGTCAAGGAA+AGG 0.586389 1_1:+78942390 Msa0046670:five_prime_UTR
ATTGAGAGGAATGCAAGCAA+TGG 0.586548 1_1:+78947903 Msa0046670:three_prime_UTR
AGACGTTGGCGCAAGTTGAG+AGG 0.588652 1_1:+78940284 Msa0046670:five_prime_UTR
GGAGATGGAGTCGTCCGTGA+TGG 0.588965 1_1:+78940123 Msa0046670:five_prime_UTR
TTGGCCTTGCAGTAATGTTG+TGG 0.589720 1_1:+78942333 Msa0046670:intron
ACGTATTTCTACAGAACCAT+TGG 0.593140 1_1:+78939823 Msa0046670:five_prime_UTR
CGTGTCTCAGGTGCAACAGA+AGG 0.594843 1_1:+78943464 Msa0046670:five_prime_UTR
GGCAGGCATTCACCAGTGCT+AGG 0.597638 1_1:-78941620 None:intergenic
GCACCGACAACCGGAACAAG+AGG 0.600784 1_1:-78942075 None:intergenic
GGCGGCGAGCTTATCACGGA+GGG 0.601748 1_1:-78939903 None:intergenic
CACCGAACCAGAAGCCATCA+CGG 0.602688 1_1:-78940137 None:intergenic
ATTATGGTGAAGAAGTGAAG+TGG 0.608533 1_1:-78939657 None:intergenic
GATCCAACAAGCTCCGCAGA+TGG 0.609291 1_1:-78944236 None:intergenic
TGACCACCAGGCTTGCTCAA+GGG 0.609355 1_1:-78942135 None:intergenic
TGTCTGGTGACTTCCCAAAG+AGG 0.610893 1_1:-78945853 None:intergenic
ATCTAGGTGCTATAATGGTG+TGG 0.612874 1_1:+78944863 Msa0046670:five_prime_UTR
ATGTAAATTGCAGAATGTCA+AGG 0.615849 1_1:+78946735 Msa0046670:CDS
GGACAGTGGAAGCTGGCACT+GGG 0.616854 1_1:+78947606 Msa0046670:three_prime_UTR
GTTGAAGTGTTTGGTAGCTG+CGG 0.617732 1_1:+78940063 Msa0046670:five_prime_UTR
GAATGTCAAGGTGTTGAACG+AGG 0.618719 1_1:+78946747 Msa0046670:CDS
GAAATGTCCAGATGGCAACT+GGG 0.618954 1_1:+78943508 Msa0046670:five_prime_UTR
TAACCCTCCTGGCCTTAGCA+GGG 0.626190 1_1:+78942368 Msa0046670:five_prime_UTR
GGTGGTGGTGATAATTCCAA+TGG 0.626917 1_1:-78939839 None:intergenic
GTGTTCGGGAGAAACTATGC+CGG 0.626957 1_1:+78940102 Msa0046670:five_prime_UTR
TAATTTGCCAGCGTCTCTGG+TGG 0.627326 1_1:+78944786 Msa0046670:intron
TCGGTGCAGAAGATGGGCAG+TGG 0.627663 1_1:+78942091 Msa0046670:five_prime_UTR
GAAAAGGGTATGATGGACAG+TGG 0.627719 1_1:+78947592 Msa0046670:three_prime_UTR
ATGGTTCACAGTTGATGTTG+GGG 0.627806 1_1:+78947714 Msa0046670:three_prime_UTR
AACTTGTCATTATTGCAACA+GGG 0.628372 1_1:-78941875 None:intergenic
ATGGAGAAGAAATGTCCAGA+TGG 0.629322 1_1:+78943500 Msa0046670:five_prime_UTR
CATTTATTGTATATAATGAG+CGG 0.629480 1_1:+78944990 Msa0046670:five_prime_UTR
ATTTATATGCAGACACCTGA+TGG 0.632909 1_1:+78945462 Msa0046670:intron
AGAAAGGTCAAGCCCAGTCG+GGG 0.637922 1_1:-78941396 None:intergenic
GAGTGTGAATCTAGAAGTGA+AGG 0.638377 1_1:-78939713 None:intergenic
ATGAGGATATACCGTGAAGG+AGG 0.639551 1_1:-78939483 None:intergenic
CGATCCCTGCTAAGGCCAGG+AGG 0.643069 1_1:-78942372 None:intergenic
GGCGAGCTTATCACGGAGGG+AGG 0.644418 1_1:-78939900 None:intergenic
GATCCCTGCTAAGGCCAGGA+GGG 0.648985 1_1:-78942371 None:intergenic
TAACGATCATGATAAAGCAA+CGG 0.650025 1_1:-78947451 None:intergenic
TCTGGTAATGGAAATTCTGG+TGG 0.652606 1_1:+78940205 Msa0046670:five_prime_UTR
AGCTAGTCCAGCATTTCTGG+AGG 0.653238 1_1:-78939996 None:intergenic
AACCTCTATACCCCATAGAG+CGG 0.653508 1_1:-78941444 None:intergenic
TTAATAAGAATATAAGAAGG+GGG 0.653675 1_1:-78939559 None:intergenic
AAGCAACGGTTAAGAGACCT+GGG 0.655796 1_1:-78947437 None:intergenic
CACGCAGCAGACATCTGATG+TGG 0.662501 1_1:-78947687 None:intergenic
TGAAGAAGGATAAGAAATGG+TGG 0.664057 1_1:-78945817 None:intergenic
ATGTGATATAAAACTTCCCG+AGG 0.667291 1_1:+78945530 Msa0046670:five_prime_UTR
CTGTCTGCAGAGCCTCCCAA+AGG 0.668083 1_1:-78941581 None:intergenic
AATGTCAAGGTGTTGAACGA+GGG 0.668582 1_1:+78946748 Msa0046670:CDS
ACTTGTCATTATTGCAACAG+GGG 0.669538 1_1:-78941874 None:intergenic
AGTCCCTTGAGCAAGCCTGG+TGG 0.680286 1_1:+78942132 Msa0046670:five_prime_UTR
GTGCTGCAGATCATACTGCA+TGG 0.682152 1_1:+78946829 Msa0046670:CDS
GCATCTCAAGCCGCTCTATG+GGG 0.682344 1_1:+78941434 Msa0046670:five_prime_UTR
CTGTAGAAATACGTGCCACG+TGG 0.692995 1_1:-78939814 None:intergenic
GTCGTTGAGAGTATCGCAGG+CGG 0.695512 1_1:-78939921 None:intergenic
GCTATGAGGATATACCGTGA+AGG 0.698917 1_1:-78939486 None:intergenic
CCAAAGGATAAATTTCACCC+AGG 0.700567 1_1:-78941565 None:intergenic
GTCATCAACATGTTGCCACG+TGG 0.704597 1_1:+78939799 Msa0046670:five_prime_UTR
ACATGATGTGAAAAGGTCTG+AGG 0.709695 1_1:+78946807 Msa0046670:CDS
CGGCGGAAATTGAATCCGGG+AGG 0.717481 1_1:-78939860 None:intergenic
AGGCGGCGAGCTTATCACGG+AGG 0.723729 1_1:-78939904 None:intergenic
TGCCTGTATAACAGAAACTG+GGG 0.723775 1_1:+78943426 Msa0046670:intron
GAAAAGAAAAGAGAAAACGG+TGG 0.732329 1_1:-78939682 None:intergenic
TGAGTCTGGTGATTTCGCGG+CGG 0.761726 1_1:-78939877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAGATTTAATTTTTGT+CGG - chr1_1:78940738-78940757 None:intergenic 10.0%
!! AATTTATACATAAAATACAA+TGG - chr1_1:78945570-78945589 None:intergenic 10.0%
!! ATTAATAAGAATATAAGAAG+GGG - chr1_1:78939563-78939582 None:intergenic 15.0%
!! GATTAATAAGAATATAAGAA+GGG - chr1_1:78939564-78939583 None:intergenic 15.0%
!! TGATTAATAAGAATATAAGA+AGG - chr1_1:78939565-78939584 None:intergenic 15.0%
!! TATTAATGTGTTTATAAACA+AGG - chr1_1:78940356-78940375 None:intergenic 15.0%
!!! ATTTAGATTTAATTTTTGTC+GGG - chr1_1:78940737-78940756 None:intergenic 15.0%
!!! AAATCATTTTGTATGAAATT+TGG + chr1_1:78942531-78942550 Msa0046670:intron 15.0%
!!! AATCATTTTGTATGAAATTT+GGG + chr1_1:78942532-78942551 Msa0046670:intron 15.0%
!! TAATATTATCTTTGGATTAA+AGG + chr1_1:78942656-78942675 Msa0046670:intron 15.0%
!! GAAAATAATGTTATGATATT+AGG + chr1_1:78942708-78942727 Msa0046670:intron 15.0%
!! AGTTTAATAACATAACATAA+TGG + chr1_1:78943140-78943159 Msa0046670:intron 15.0%
!! TAAATTAAGACATTCAAATT+TGG + chr1_1:78943681-78943700 Msa0046670:intron 15.0%
!! TAATCTTATATGTTGAAAAT+GGG + chr1_1:78944028-78944047 Msa0046670:intron 15.0%
!! ATTGTAGAAATAAAGTTATT+TGG - chr1_1:78944163-78944182 None:intergenic 15.0%
!! ATAACAATGAGAAATTTATA+GGG - chr1_1:78944360-78944379 None:intergenic 15.0%
!! AATAACAATGAGAAATTTAT+AGG - chr1_1:78944361-78944380 None:intergenic 15.0%
!!! TATGTATAAATTAATTTGGT+TGG + chr1_1:78945578-78945597 Msa0046670:intron 15.0%
!!! ATGTATAAATTAATTTGGTT+GGG + chr1_1:78945579-78945598 Msa0046670:intron 15.0%
!! ATTTAGCATGATAATTAAAT+AGG + chr1_1:78946092-78946111 Msa0046670:intron 15.0%
!!! AAATAGATTTTGTTAACTTA+TGG + chr1_1:78946436-78946455 Msa0046670:intron 15.0%
!!! TTTAAAATATTTTTTACCGA+AGG - chr1_1:78946680-78946699 None:intergenic 15.0%
!! TTAGTAGTAGAAATTATTAT+AGG - chr1_1:78947744-78947763 None:intergenic 15.0%
!! ATTTCCTGTAATTATATTAT+TGG + chr1_1:78947852-78947871 Msa0046670:three_prime_UTR 15.0%
!! TTTCCTGTAATTATATTATT+GGG + chr1_1:78947853-78947872 Msa0046670:three_prime_UTR 15.0%
!! TTAATAAGAATATAAGAAGG+GGG - chr1_1:78939562-78939581 None:intergenic 20.0%
!!! TGTACTTTTATAGTTATGTT+CGG - chr1_1:78940412-78940431 None:intergenic 20.0%
!!! TTTAGATTTAATTTTTGTCG+GGG - chr1_1:78940736-78940755 None:intergenic 20.0%
!!! GAATGATTTGGAAAAAAAAA+AGG + chr1_1:78940954-78940973 Msa0046670:intron 20.0%
!!! TAAAGATCTAATTTGTGAAT+TGG + chr1_1:78942049-78942068 Msa0046670:intron 20.0%
!! AACATGAGAAAGTAATAATT+AGG - chr1_1:78942626-78942645 None:intergenic 20.0%
!! AAGAACTCTAATATTATCTT+TGG + chr1_1:78942648-78942667 Msa0046670:intron 20.0%
!! TTATCAAAAATAGAATAGAG+TGG + chr1_1:78942745-78942764 Msa0046670:intron 20.0%
!!! TAAAAAATTTGGAACTAACA+TGG + chr1_1:78943083-78943102 Msa0046670:intron 20.0%
!!! TATTTTTTCATTCTATCCAA+TGG + chr1_1:78943241-78943260 Msa0046670:intron 20.0%
!!! CGTTTTTATTAGGATATATT+GGG - chr1_1:78943326-78943345 None:intergenic 20.0%
!!! TCGTTTTTATTAGGATATAT+TGG - chr1_1:78943327-78943346 None:intergenic 20.0%
!!! AATTTAGTTTAGATGATGAA+AGG - chr1_1:78943667-78943686 None:intergenic 20.0%
!!! TAAGTTATTAACACATGTTT+TGG - chr1_1:78943820-78943839 None:intergenic 20.0%
!! TCATACATCTTATTAACAAT+TGG + chr1_1:78943852-78943871 Msa0046670:intron 20.0%
!! CTAATCTTATATGTTGAAAA+TGG + chr1_1:78944027-78944046 Msa0046670:intron 20.0%
!! AATCTTATATGTTGAAAATG+GGG + chr1_1:78944029-78944048 Msa0046670:intron 20.0%
!! AAATTAGAAAGGCTAAAATA+CGG - chr1_1:78944129-78944148 None:intergenic 20.0%
!! ATAAATTATGTAGATCAGTT+TGG + chr1_1:78944311-78944330 Msa0046670:five_prime_UTR 20.0%
!! TGTTATTATATCTACTTTCT+TGG + chr1_1:78944374-78944393 Msa0046670:intron 20.0%
!!! CTTGGTTTTATTGATTAAAT+TGG + chr1_1:78944392-78944411 Msa0046670:intron 20.0%
!! ATTTCAATTCATATTCATCT+AGG + chr1_1:78944847-78944866 Msa0046670:five_prime_UTR 20.0%
!! TGCTCATAAATATATAACAA+GGG - chr1_1:78944957-78944976 None:intergenic 20.0%
!! CATTTATTGTATATAATGAG+CGG + chr1_1:78944990-78945009 Msa0046670:five_prime_UTR 20.0%
!!! ATAAATTGCAAGTTTTATCT+AGG - chr1_1:78945392-78945411 None:intergenic 20.0%
!! TATAATTCCATATTACAGTA+TGG + chr1_1:78945602-78945621 Msa0046670:intron 20.0%
!! TCCTTTGCAAAAAAAAAAAA+AGG + chr1_1:78945703-78945722 Msa0046670:intron 20.0%
!!! TCCTTTTTTTTTTTTTGCAA+AGG - chr1_1:78945707-78945726 None:intergenic 20.0%
!!! ATGTAATATTACTTTTTGTC+TGG - chr1_1:78945872-78945891 None:intergenic 20.0%
!!! ATTTTTCATAATTGCAAACA+TGG - chr1_1:78945930-78945949 None:intergenic 20.0%
!! TTCTGTCTTTATAAAACATT+TGG + chr1_1:78945975-78945994 Msa0046670:intron 20.0%
!!! CTTACAGGTTAATTTTATTT+CGG + chr1_1:78946882-78946901 Msa0046670:intron 20.0%
!!! ATTTGCTAGTAATTGATATA+TGG + chr1_1:78947021-78947040 Msa0046670:intron 20.0%
!!! CTAAAAGGTAATGTTTTTTT+TGG - chr1_1:78947084-78947103 None:intergenic 20.0%
!!! CAAGTTATTTTTGTAATACT+TGG + chr1_1:78947478-78947497 Msa0046670:three_prime_UTR 20.0%
!! ACTAATATTGTAAAATTGAG+AGG + chr1_1:78947889-78947908 Msa0046670:three_prime_UTR 20.0%
! AACGAAAAGAAAAGAGAAAA+CGG - chr1_1:78939688-78939707 None:intergenic 25.0%
!!! TTTGTTTTTGTTGAAGTGTT+TGG + chr1_1:78940054-78940073 Msa0046670:five_prime_UTR 25.0%
! TTAATTCCACTCCAATTATA+CGG + chr1_1:78940460-78940479 Msa0046670:intron 25.0%
! ACATCAAGACTATTATGTTA+TGG + chr1_1:78940577-78940596 Msa0046670:intron 25.0%
!! ACCTTTATTTAAAACCAACT+GGG + chr1_1:78940618-78940637 Msa0046670:intron 25.0%
! ACTAACTATTCTATCTCAAA+TGG - chr1_1:78941020-78941039 None:intergenic 25.0%
!!! ATAGAATAGTTAGTTTGCAA+GGG + chr1_1:78941026-78941045 Msa0046670:intron 25.0%
!! ATATTTTGCATGTTATGAAC+TGG + chr1_1:78941178-78941197 Msa0046670:intron 25.0%
!!! TTATGAACTGGTTCTAATAA+GGG + chr1_1:78941190-78941209 Msa0046670:intron 25.0%
!! TTCTTGTACTTCAAGTTATA+TGG + chr1_1:78941837-78941856 Msa0046670:five_prime_UTR 25.0%
!!! TATACAATTGCTTTTCAGAA+AGG + chr1_1:78942004-78942023 Msa0046670:intron 25.0%
!!! TTCAAATGGTTTTTTTGTCA+AGG + chr1_1:78942195-78942214 Msa0046670:five_prime_UTR 25.0%
!!! TTTTTTTGTCAAGGAAGAAA+AGG + chr1_1:78942204-78942223 Msa0046670:five_prime_UTR 25.0%
! TTTGGATTAAAGGAAAGAAA+TGG + chr1_1:78942666-78942685 Msa0046670:intron 25.0%
! TAATTACGAAAAAATCGCTT+TGG + chr1_1:78943030-78943049 Msa0046670:intron 25.0%
!!! TTGCATCATTCGTTTTTATT+AGG - chr1_1:78943336-78943355 None:intergenic 25.0%
! GAAATATTGAAATCATGTAC+AGG - chr1_1:78943619-78943638 None:intergenic 25.0%
! TACTGTATTCTTAATATCGA+AGG - chr1_1:78943796-78943815 None:intergenic 25.0%
! ATTGTTAATTATCCTGATCT+AGG - chr1_1:78943935-78943954 None:intergenic 25.0%
! AGATCAGGATAATTAACAAT+TGG + chr1_1:78943935-78943954 Msa0046670:intron 25.0%
! ATTGTGTAGTCAAATTAGAA+AGG - chr1_1:78944140-78944159 None:intergenic 25.0%
! TATAAGATGTTTGTATTAGC+TGG - chr1_1:78944206-78944225 None:intergenic 25.0%
!! GGTTGTCATTTATTCAAAAT+CGG - chr1_1:78944540-78944559 None:intergenic 25.0%
! TAACCATTAAAGAGAATGTA+AGG - chr1_1:78944613-78944632 None:intergenic 25.0%
! GGCAAATTAAAAAGCAAAAA+GGG - chr1_1:78944775-78944794 None:intergenic 25.0%
! TGGCAAATTAAAAAGCAAAA+AGG - chr1_1:78944776-78944795 None:intergenic 25.0%
! CTGCTCATAAATATATAACA+AGG - chr1_1:78944958-78944977 None:intergenic 25.0%
!!! TGAAGTATCTTTTTAATGTC+TGG + chr1_1:78945094-78945113 Msa0046670:intron 25.0%
!!! GAAGTATCTTTTTAATGTCT+GGG + chr1_1:78945095-78945114 Msa0046670:intron 25.0%
!! TTTAGAACCATGTTTAAAGT+TGG + chr1_1:78945306-78945325 Msa0046670:intron 25.0%
! TAGATGGTGTTTGAATTATT+AGG + chr1_1:78945339-78945358 Msa0046670:intron 25.0%
! TTTATCTAGGCAAATATTTG+AGG - chr1_1:78945379-78945398 None:intergenic 25.0%
! ACTTAAAAGATTAAAACGCT+CGG - chr1_1:78945641-78945660 None:intergenic 25.0%
! AATGCATACAAGTTTCTAAA+AGG + chr1_1:78945670-78945689 Msa0046670:intron 25.0%
! AATTAAATAGGTTGTGTTTC+TGG + chr1_1:78946104-78946123 Msa0046670:intron 25.0%
! AATCCAAATATTATGGGAAT+CGG - chr1_1:78946203-78946222 None:intergenic 25.0%
! GGACTAAATCCAAATATTAT+GGG - chr1_1:78946209-78946228 None:intergenic 25.0%
! AGGACTAAATCCAAATATTA+TGG - chr1_1:78946210-78946229 None:intergenic 25.0%
!! GTTAATGCTATATTGCTATT+TGG + chr1_1:78946233-78946252 Msa0046670:intron 25.0%
!!! GTGATCTTTGTTTCTATAAA+TGG - chr1_1:78946300-78946319 None:intergenic 25.0%
! ATAATAGCCGAAAATGTTAT+GGG + chr1_1:78946531-78946550 Msa0046670:intron 25.0%
!! TTGGAGAAGATAATATGTTT+TGG - chr1_1:78947065-78947084 None:intergenic 25.0%
! TTAGAAAATTAAGTGTTCCA+TGG - chr1_1:78947107-78947126 None:intergenic 25.0%
!! ATAGTGAGTTTTTATGAACT+AGG - chr1_1:78947152-78947171 None:intergenic 25.0%
!!! TATTGTTATTTTACCGATAC+AGG + chr1_1:78947359-78947378 Msa0046670:intron 25.0%
!!! ATTGTTATTTTACCGATACA+GGG + chr1_1:78947360-78947379 Msa0046670:intron 25.0%
! AACAGTGATTCATGTTAAAT+CGG - chr1_1:78947533-78947552 None:intergenic 25.0%
! ATTTCTACTACTAAAATGAC+AGG + chr1_1:78947750-78947769 Msa0046670:three_prime_UTR 25.0%
! ATTACAGGAAATGAAAAACT+CGG - chr1_1:78947844-78947863 None:intergenic 25.0%
! CAACCCAATAATATAATTAC+AGG - chr1_1:78947859-78947878 None:intergenic 25.0%
! CAAGTCTCTTTCATTATTAA+GGG + chr1_1:78947943-78947962 Msa0046670:three_prime_UTR 25.0%
!! AATGATTTTGAGAAAGAGAG+AGG - chr1_1:78939749-78939768 None:intergenic 30.0%
GATGAAGAAGAAAATGAAGA+TGG - chr1_1:78939779-78939798 None:intergenic 30.0%
TAATTCCACTCCAATTATAC+GGG + chr1_1:78940461-78940480 Msa0046670:intron 30.0%
AGAAATTCTCCACAATATCA+AGG - chr1_1:78940535-78940554 None:intergenic 30.0%
TGGAGAATTTCTGTTAAATG+CGG + chr1_1:78940543-78940562 Msa0046670:intron 30.0%
TTATGTTATGGCTTAGATTG+AGG + chr1_1:78940589-78940608 Msa0046670:intron 30.0%
! GACCTTTATTTAAAACCAAC+TGG + chr1_1:78940617-78940636 Msa0046670:intron 30.0%
!!! TCCCAGTTGGTTTTAAATAA+AGG - chr1_1:78940622-78940641 None:intergenic 30.0%
! AATCCATGACATTTTCATAC+AGG + chr1_1:78940758-78940777 Msa0046670:intron 30.0%
! ATCCATGACATTTTCATACA+GGG + chr1_1:78940759-78940778 Msa0046670:intron 30.0%
TTGTCCCCAATATGAAAAAA+TGG + chr1_1:78940821-78940840 Msa0046670:intron 30.0%
!!! TTTGGGTTTATTTTTTTGCC+AGG + chr1_1:78940854-78940873 Msa0046670:intron 30.0%
!!! TTGGGTTTATTTTTTTGCCA+GGG + chr1_1:78940855-78940874 Msa0046670:intron 30.0%
AAAATTGTGAGAGACTGAAT+TGG + chr1_1:78940896-78940915 Msa0046670:intron 30.0%
AAATTGTGAGAGACTGAATT+GGG + chr1_1:78940897-78940916 Msa0046670:intron 30.0%
!! GATAGAATAGTTAGTTTGCA+AGG + chr1_1:78941025-78941044 Msa0046670:intron 30.0%
! ATATCTGAGCTTTTGTCATT+CGG + chr1_1:78941121-78941140 Msa0046670:intron 30.0%
!! GTTATGAACTGGTTCTAATA+AGG + chr1_1:78941189-78941208 Msa0046670:intron 30.0%
GTTGTTATAATTGCATTACC+TGG + chr1_1:78941464-78941483 Msa0046670:intron 30.0%
TACATATGCTTCATACATAC+AGG + chr1_1:78941506-78941525 Msa0046670:intron 30.0%
ACATATGCTTCATACATACA+GGG + chr1_1:78941507-78941526 Msa0046670:intron 30.0%
TAATAAGATCTTGTCCTTCT+AGG + chr1_1:78941532-78941551 Msa0046670:intron 30.0%
AATAAGATCTTGTCCTTCTA+GGG + chr1_1:78941533-78941552 Msa0046670:intron 30.0%
AACTTGTCATTATTGCAACA+GGG - chr1_1:78941878-78941897 None:intergenic 30.0%
ATAAAACCTGCTCAAAAAGT+TGG - chr1_1:78941977-78941996 None:intergenic 30.0%
ACTTGAGATATCAATAACGA+CGG - chr1_1:78942253-78942272 None:intergenic 30.0%
TTACAAATCACTGATACTGT+TGG + chr1_1:78942314-78942333 Msa0046670:intron 30.0%
ATTCCTTCTTAAAGTTGACA+GGG + chr1_1:78942445-78942464 Msa0046670:intron 30.0%
CATGGAAATCATGCATTTAA+AGG - chr1_1:78942593-78942612 None:intergenic 30.0%
TTAAATGCATGATTTCCATG+TGG + chr1_1:78942593-78942612 Msa0046670:intron 30.0%
TAATTAGGTATAATGCCACA+TGG - chr1_1:78942611-78942630 None:intergenic 30.0%
AAATAGAATAGAGTGGAACT+TGG + chr1_1:78942752-78942771 Msa0046670:intron 30.0%
AAAGTTGAAGTTGTCAAACT+GGG + chr1_1:78942803-78942822 Msa0046670:intron 30.0%
AAAGATAGCAAATTGATCCA+GGG - chr1_1:78942886-78942905 None:intergenic 30.0%
TAATGAAGTAATCAAGCCAT+TGG - chr1_1:78943260-78943279 None:intergenic 30.0%
AGAAGGAATTAATGTACTGA+TGG + chr1_1:78943481-78943500 Msa0046670:five_prime_UTR 30.0%
! AGGAAAATCATGTACCTTTT+TGG - chr1_1:78943599-78943618 None:intergenic 30.0%
TTGCACTGCTTCAAATTATT+TGG + chr1_1:78943724-78943743 Msa0046670:intron 30.0%
CATTTATACGTCTCACTATA+AGG - chr1_1:78943769-78943788 None:intergenic 30.0%
!!! GAGTTATTTTTGTTTGCTCA+AGG + chr1_1:78944051-78944070 Msa0046670:intron 30.0%
!! GTTAGTGTTAGTTTGTTTCA+TGG + chr1_1:78944073-78944092 Msa0046670:intron 30.0%
ATTTCTACAATCAAGTTTGC+AGG + chr1_1:78944172-78944191 Msa0046670:intron 30.0%
!! ATATGTTGATTTACCATCTG+CGG + chr1_1:78944223-78944242 Msa0046670:five_prime_UTR 30.0%
AAGAATGTGAATAGTATACC+AGG + chr1_1:78944263-78944282 Msa0046670:five_prime_UTR 30.0%
AACCACAAGCTGAAATTAAT+GGG + chr1_1:78944556-78944575 Msa0046670:intron 30.0%
! TTATATTTCTAAGCCAGGAA+AGG - chr1_1:78944585-78944604 None:intergenic 30.0%
! ATGGTTTATATTTCTAAGCC+AGG - chr1_1:78944590-78944609 None:intergenic 30.0%
CATTAAAGAGAATGTAAGGA+TGG - chr1_1:78944609-78944628 None:intergenic 30.0%
CATCCTTACATTCTCTTTAA+TGG + chr1_1:78944607-78944626 Msa0046670:intron 30.0%
CTATTCTGTTCATTACTTAG+TGG + chr1_1:78944637-78944656 Msa0046670:intron 30.0%
TGTGTAAACATTTCATTCAC+GGG - chr1_1:78944735-78944754 None:intergenic 30.0%
GTGTGTAAACATTTCATTCA+CGG - chr1_1:78944736-78944755 None:intergenic 30.0%
! TATTCATCTAGGTGCTATAA+TGG + chr1_1:78944858-78944877 Msa0046670:five_prime_UTR 30.0%
! TCTTTTTCTTTTAGCAGATG+AGG - chr1_1:78945026-78945045 None:intergenic 30.0%
GCTAAAAGAAAAAGAAGACA+TGG + chr1_1:78945031-78945050 Msa0046670:five_prime_UTR 30.0%
! AGATGAGATATAAGAGTACA+AGG - chr1_1:78945184-78945203 None:intergenic 30.0%
CTGAATACCATACTGTAATA+TGG - chr1_1:78945612-78945631 None:intergenic 30.0%
! TTTATGTCATGTTTTCTCTC+TGG + chr1_1:78945756-78945775 Msa0046670:intron 30.0%
CTAAATACAACATCATCAAC+GGG - chr1_1:78946078-78946097 None:intergenic 30.0%
GCTAAATACAACATCATCAA+CGG - chr1_1:78946079-78946098 None:intergenic 30.0%
ATATGCGTTACAACACTTTA+TGG - chr1_1:78946137-78946156 None:intergenic 30.0%
AATCCGATTCCCATAATATT+TGG + chr1_1:78946197-78946216 Msa0046670:intron 30.0%
AGCAATATAGCATTAACGAA+AGG - chr1_1:78946230-78946249 None:intergenic 30.0%
CATAATAGCCGAAAATGTTA+TGG + chr1_1:78946530-78946549 Msa0046670:intron 30.0%
ACAGCACTTCTTATTGATAT+AGG - chr1_1:78946619-78946638 None:intergenic 30.0%
!!! ATATTTTTTACCGAAGGCTA+GGG - chr1_1:78946674-78946693 None:intergenic 30.0%
!!! AATATTTTTTACCGAAGGCT+AGG - chr1_1:78946675-78946694 None:intergenic 30.0%
ATGTAAATTGCAGAATGTCA+AGG + chr1_1:78946735-78946754 Msa0046670:CDS 30.0%
ATTGGAAACATGATGTGAAA+AGG + chr1_1:78946800-78946819 Msa0046670:CDS 30.0%
! ACAACTCTTTTCGATAACTT+GGG - chr1_1:78946985-78947004 None:intergenic 30.0%
CAATTACTAGCAAATCTGTA+TGG - chr1_1:78947016-78947035 None:intergenic 30.0%
! AAAACATTACCTTTTAGCCA+TGG + chr1_1:78947087-78947106 Msa0046670:intron 30.0%
! TGAGTTTTTATGAACTAGGA+GGG - chr1_1:78947148-78947167 None:intergenic 30.0%
! GCTTTTCAATATTCTTGTAC+AGG - chr1_1:78947221-78947240 None:intergenic 30.0%
AATACATGATTTCCCTGTAT+CGG - chr1_1:78947375-78947394 None:intergenic 30.0%
ATCTTCAATTTGTATCCATC+TGG - chr1_1:78947405-78947424 None:intergenic 30.0%
TAACGATCATGATAAAGCAA+CGG - chr1_1:78947454-78947473 None:intergenic 30.0%
ATCACTGTTTCCATTAATTC+AGG + chr1_1:78947544-78947563 Msa0046670:three_prime_UTR 30.0%
GATTGCTAAACCTGAATTAA+TGG - chr1_1:78947557-78947576 None:intergenic 30.0%
AAAACAACCTAATGTAGCAA+AGG - chr1_1:78947792-78947811 None:intergenic 30.0%
GCAAGTCTCTTTCATTATTA+AGG + chr1_1:78947942-78947961 Msa0046670:three_prime_UTR 30.0%
ACGAACTTGTGAATATTTGA+TGG - chr1_1:78947986-78948005 None:intergenic 30.0%
TATCAAGAGAAGATGCTATG+AGG - chr1_1:78939503-78939522 None:intergenic 35.0%
TGTTGTGTTGTGAGTTAGAA+TGG - chr1_1:78939590-78939609 None:intergenic 35.0%
ATTATGGTGAAGAAGTGAAG+TGG - chr1_1:78939660-78939679 None:intergenic 35.0%
GAAAAGAAAAGAGAAAACGG+TGG - chr1_1:78939685-78939704 None:intergenic 35.0%
! ACGTATTTCTACAGAACCAT+TGG + chr1_1:78939823-78939842 Msa0046670:five_prime_UTR 35.0%
TACAGAGTAAGACGTTTCTT+CGG + chr1_1:78939968-78939987 Msa0046670:five_prime_UTR 35.0%
! ATGATTGAGAAGATGGATTC+TGG + chr1_1:78940187-78940206 Msa0046670:five_prime_UTR 35.0%
!! GATTCTGGTAATGGAAATTC+TGG + chr1_1:78940202-78940221 Msa0046670:five_prime_UTR 35.0%
GTTTGGAGGATCATGAAATT+CGG + chr1_1:78940242-78940261 Msa0046670:five_prime_UTR 35.0%
TTTGGAGGATCATGAAATTC+GGG + chr1_1:78940243-78940262 Msa0046670:five_prime_UTR 35.0%
GAATAAGTTGTTAGAGACGT+TGG + chr1_1:78940270-78940289 Msa0046670:five_prime_UTR 35.0%
GAACCAAGGTTCTTTAATAG+TGG + chr1_1:78940483-78940502 Msa0046670:intron 35.0%
TTGCCACTATTAAAGAACCT+TGG - chr1_1:78940489-78940508 None:intergenic 35.0%
AGGTTCTTTAATAGTGGCAA+TGG + chr1_1:78940489-78940508 Msa0046670:intron 35.0%
TCTTTAATAGTGGCAATGGT+TGG + chr1_1:78940493-78940512 Msa0046670:intron 35.0%
! TTTCTTTTCTCTCTTCCACT+CGG - chr1_1:78940647-78940666 None:intergenic 35.0%
! TCCATGACATTTTCATACAG+GGG + chr1_1:78940760-78940779 Msa0046670:intron 35.0%
TCACTCTGATATAATGAGTC+AGG + chr1_1:78940792-78940811 Msa0046670:intron 35.0%
CACTCTGATATAATGAGTCA+GGG + chr1_1:78940793-78940812 Msa0046670:intron 35.0%
!!! CGTGCCATTTTTTCATATTG+GGG - chr1_1:78940828-78940847 None:intergenic 35.0%
!!! CCGTGCCATTTTTTCATATT+GGG - chr1_1:78940829-78940848 None:intergenic 35.0%
CCCAATATGAAAAAATGGCA+CGG + chr1_1:78940826-78940845 Msa0046670:intron 35.0%
!!! TCCGTGCCATTTTTTCATAT+TGG - chr1_1:78940830-78940849 None:intergenic 35.0%
AAAAATGGCACGGAGTAATT+TGG + chr1_1:78940836-78940855 Msa0046670:intron 35.0%
AAAATGGCACGGAGTAATTT+GGG + chr1_1:78940837-78940856 Msa0046670:intron 35.0%
!!! TTTTTTGCCAGGGTCTAAAA+TGG + chr1_1:78940865-78940884 Msa0046670:intron 35.0%
!! TTTTTGCCAGGGTCTAAAAT+GGG + chr1_1:78940866-78940885 Msa0046670:intron 35.0%
ACGTTGCAGTTATCAGATTA+TGG + chr1_1:78941274-78941293 Msa0046670:intron 35.0%
CAGTTATCAGATTATGGTTC+TGG + chr1_1:78941280-78941299 Msa0046670:intron 35.0%
GGAACTTATTGTCCAACAAT+TGG + chr1_1:78941301-78941320 Msa0046670:five_prime_UTR 35.0%
! AGTGAAAGAAGGCCAAATTT+TGG + chr1_1:78941364-78941383 Msa0046670:five_prime_UTR 35.0%
! GTGAAAGAAGGCCAAATTTT+GGG + chr1_1:78941365-78941384 Msa0046670:five_prime_UTR 35.0%
CTAAATGCAGATTATGAACC+AGG - chr1_1:78941485-78941504 None:intergenic 35.0%
CTGGGTGAAATTTATCCTTT+GGG + chr1_1:78941566-78941585 Msa0046670:five_prime_UTR 35.0%
! AGGTCTTATAAGAGATCTTC+AGG + chr1_1:78941682-78941701 Msa0046670:five_prime_UTR 35.0%
!! AAGAATTCTCTAGCCTTGAA+AGG - chr1_1:78941822-78941841 None:intergenic 35.0%
ACTTGTCATTATTGCAACAG+GGG - chr1_1:78941877-78941896 None:intergenic 35.0%
GAACTTGTCATTATTGCAAC+AGG - chr1_1:78941879-78941898 None:intergenic 35.0%
!! AACTTTCCAACTTTTTGAGC+AGG + chr1_1:78941968-78941987 Msa0046670:five_prime_UTR 35.0%
TTTGAAGATGCCTTTGTCAT+GGG - chr1_1:78942181-78942200 None:intergenic 35.0%
ATTTGAAGATGCCTTTGTCA+TGG - chr1_1:78942182-78942201 None:intergenic 35.0%
!! ATGACAAAGGCATCTTCAAA+TGG + chr1_1:78942181-78942200 Msa0046670:five_prime_UTR 35.0%
! CTGTCAACTTTAAGAAGGAA+TGG - chr1_1:78942446-78942465 None:intergenic 35.0%
CATTCCTTCTTAAAGTTGAC+AGG + chr1_1:78942444-78942463 Msa0046670:intron 35.0%
AGGAAAGAAATGGAATGAAG+TGG + chr1_1:78942676-78942695 Msa0046670:intron 35.0%
GGAAAGAAATGGAATGAAGT+GGG + chr1_1:78942677-78942696 Msa0046670:intron 35.0%
GAAAGAAATGGAATGAAGTG+GGG + chr1_1:78942678-78942697 Msa0046670:intron 35.0%
TGATATTAGGTTTCACTGTC+TGG + chr1_1:78942721-78942740 Msa0046670:intron 35.0%
GAAAGTTGAAGTTGTCAAAC+TGG + chr1_1:78942802-78942821 Msa0046670:intron 35.0%
CAAAGATAGCAAATTGATCC+AGG - chr1_1:78942887-78942906 None:intergenic 35.0%
AAATTTCCATTTAGTCCAGC+AGG + chr1_1:78942911-78942930 Msa0046670:intron 35.0%
AATATGCTGCTCTCACAATT+AGG - chr1_1:78942952-78942971 None:intergenic 35.0%
ACTCGATGTAATCATCAACT+TGG - chr1_1:78943123-78943142 None:intergenic 35.0%
AGGTTGGAAGTTGGATAAAA+AGG - chr1_1:78943179-78943198 None:intergenic 35.0%
CATAGAGTGTAATGCAACAT+AGG - chr1_1:78943297-78943316 None:intergenic 35.0%
TACACTGAATTCGACAAGTT+TGG + chr1_1:78943554-78943573 Msa0046670:five_prime_UTR 35.0%
ACACTGAATTCGACAAGTTT+GGG + chr1_1:78943555-78943574 Msa0046670:five_prime_UTR 35.0%
! GACAAGTTTGGGATTACTAA+TGG + chr1_1:78943566-78943585 Msa0046670:five_prime_UTR 35.0%
! CTAATGGATCTCTTCCAAAA+AGG + chr1_1:78943582-78943601 Msa0046670:five_prime_UTR 35.0%
TCAATATTTCATCCATCTCG+TGG + chr1_1:78943629-78943648 Msa0046670:intron 35.0%
ATAGGCAATTGAACCATCTT+TGG - chr1_1:78943983-78944002 None:intergenic 35.0%
TGCAAACAAAAGATCCAGAT+AGG - chr1_1:78944001-78944020 None:intergenic 35.0%
!! GTTAGTTTGTTTCATGGTGA+AGG + chr1_1:78944079-78944098 Msa0046670:intron 35.0%
TGTGAATAGTATACCAGGAA+TGG + chr1_1:78944268-78944287 Msa0046670:five_prime_UTR 35.0%
TTTGTATTCAACACCATTCC+TGG - chr1_1:78944284-78944303 None:intergenic 35.0%
ATCAGTTTGGAAGACATTGT+AGG + chr1_1:78944324-78944343 Msa0046670:five_prime_UTR 35.0%
CAACCACAAGCTGAAATTAA+TGG + chr1_1:78944555-78944574 Msa0046670:intron 35.0%
AACCCATTAATTTCAGCTTG+TGG - chr1_1:78944561-78944580 None:intergenic 35.0%
!! AATTAATGGGTTTCCTTTCC+TGG + chr1_1:78944569-78944588 Msa0046670:intron 35.0%
GTTCATTACTTAGTGGTGTT+TGG + chr1_1:78944644-78944663 Msa0046670:intron 35.0%
TTACTTAGTGGTGTTTGGTA+AGG + chr1_1:78944649-78944668 Msa0046670:intron 35.0%
TACTTAGTGGTGTTTGGTAA+GGG + chr1_1:78944650-78944669 Msa0046670:intron 35.0%
AACATTTCATTCACGGGAAA+AGG - chr1_1:78944729-78944748 None:intergenic 35.0%
CAAGATCACTCAAATGTGAA+AGG - chr1_1:78944928-78944947 None:intergenic 35.0%
TTGTATATAATGAGCGGAGA+AGG + chr1_1:78944996-78945015 Msa0046670:five_prime_UTR 35.0%
TGTATATAATGAGCGGAGAA+GGG + chr1_1:78944997-78945016 Msa0046670:five_prime_UTR 35.0%
CATGATTAGTAAGTCAAACC+TGG - chr1_1:78945072-78945091 None:intergenic 35.0%
TTAAAATCGAATCAACGCGA+TGG - chr1_1:78945149-78945168 None:intergenic 35.0%
!! CTTTTTAGCCTCTTTTTCTG+AGG + chr1_1:78945202-78945221 Msa0046670:intron 35.0%
!! TAGTTATTTTCCAGCATACC+TGG + chr1_1:78945232-78945251 Msa0046670:intron 35.0%
AATTCAAACACCATCTAGTG+CGG - chr1_1:78945336-78945355 None:intergenic 35.0%
TATCTTGAATGTGTCAGTGA+CGG + chr1_1:78945411-78945430 Msa0046670:intron 35.0%
ATCAGGTGTCTGCATATAAA+TGG - chr1_1:78945463-78945482 None:intergenic 35.0%
ATTTATATGCAGACACCTGA+TGG + chr1_1:78945462-78945481 Msa0046670:intron 35.0%
!! TCGGGAAGTTTTATATCACA+TGG - chr1_1:78945531-78945550 None:intergenic 35.0%
ATGTGATATAAAACTTCCCG+AGG + chr1_1:78945530-78945549 Msa0046670:five_prime_UTR 35.0%
! GCATACAAGTTTCTAAAAGG+TGG + chr1_1:78945673-78945692 Msa0046670:intron 35.0%
GATGAGAACTACGTTTATTC+AGG + chr1_1:78945793-78945812 Msa0046670:five_prime_UTR 35.0%
TGAAGAAGGATAAGAAATGG+TGG - chr1_1:78945820-78945839 None:intergenic 35.0%
GGATGAAGAAGGATAAGAAA+TGG - chr1_1:78945823-78945842 None:intergenic 35.0%
!! TCTTTGCTGTGACAGTTTTA+CGG + chr1_1:78946334-78946353 Msa0046670:intron 35.0%
!! CTTATGGCATTGAGTTGATA+AGG + chr1_1:78946452-78946471 Msa0046670:intron 35.0%
!! GCATTGAGTTGATAAGGTAA+CGG + chr1_1:78946458-78946477 Msa0046670:intron 35.0%
!! CATTGAGTTGATAAGGTAAC+GGG + chr1_1:78946459-78946478 Msa0046670:intron 35.0%
TTCCATTGACCTGGAATAAA+GGG - chr1_1:78946503-78946522 None:intergenic 35.0%
! CATTGAGCCCATAACATTTT+CGG - chr1_1:78946541-78946560 None:intergenic 35.0%
TCAATGAAGATTGATGAGAG+TGG + chr1_1:78946555-78946574 Msa0046670:intron 35.0%
TCTTATTGATATAGGCAGCA+CGG - chr1_1:78946611-78946630 None:intergenic 35.0%
AGGCAAGATCAATGTAATAC+AGG - chr1_1:78946645-78946664 None:intergenic 35.0%
! GTTATGGTGGAAATGTGTAT+TGG + chr1_1:78946782-78946801 Msa0046670:CDS 35.0%
! GACAACTCTTTTCGATAACT+TGG - chr1_1:78946986-78947005 None:intergenic 35.0%
TTAAGTGTTCCATGGCTAAA+AGG - chr1_1:78947099-78947118 None:intergenic 35.0%
! GTGAGTTTTTATGAACTAGG+AGG - chr1_1:78947149-78947168 None:intergenic 35.0%
ATATTCTTGTACAGGTGAGT+AGG - chr1_1:78947213-78947232 None:intergenic 35.0%
! CATGTATTTGAAGTTCCAGA+TGG + chr1_1:78947387-78947406 Msa0046670:CDS 35.0%
TACAAATTGAAGATCATGCC+AGG + chr1_1:78947411-78947430 Msa0046670:CDS 35.0%
! GTTGCTTTATCATGATCGTT+AGG + chr1_1:78947453-78947472 Msa0046670:exon 35.0%
CAGTTAGATCCGATTGAAAA+GGG + chr1_1:78947577-78947596 Msa0046670:three_prime_UTR 35.0%
! TCCATCATACCCTTTTCAAT+CGG - chr1_1:78947589-78947608 None:intergenic 35.0%
AGTTCAACCTTTGCTACATT+AGG + chr1_1:78947782-78947801 Msa0046670:three_prime_UTR 35.0%
GACATTCAAACACATGAACT+TGG - chr1_1:78948034-78948053 None:intergenic 35.0%
!! AGGAAGAAGTGCTTATTAGC+CGG - chr1_1:78939463-78939482 None:intergenic 40.0%
AGAGAAAACGGTGGTGATTA+TGG - chr1_1:78939676-78939695 None:intergenic 40.0%
GAGTGTGAATCTAGAAGTGA+AGG - chr1_1:78939716-78939735 None:intergenic 40.0%
! TCAAGAGCATGTGTTGTGTT+CGG + chr1_1:78940087-78940106 Msa0046670:five_prime_UTR 40.0%
! GAGAAGATGGATTCTGGTAA+TGG + chr1_1:78940193-78940212 Msa0046670:five_prime_UTR 40.0%
!! TCTGGTAATGGAAATTCTGG+TGG + chr1_1:78940205-78940224 Msa0046670:five_prime_UTR 40.0%
!!! GAAATTCTGGTGGTGGTTTT+GGG + chr1_1:78940215-78940234 Msa0046670:five_prime_UTR 40.0%
GAGAGGTTCTATGATTGCAT+TGG + chr1_1:78940301-78940320 Msa0046670:five_prime_UTR 40.0%
AGGTTCTATGATTGCATTGG+AGG + chr1_1:78940304-78940323 Msa0046670:five_prime_UTR 40.0%
ATTGCATTGGAGGAGTGATT+GGG + chr1_1:78940314-78940333 Msa0046670:five_prime_UTR 40.0%
AACCTTGGTTCCCGTATAAT+TGG - chr1_1:78940474-78940493 None:intergenic 40.0%
TGGTGCAATCCTTGATATTG+TGG + chr1_1:78940523-78940542 Msa0046670:intron 40.0%
TATGGCTTAGATTGAGGTTG+TGG + chr1_1:78940595-78940614 Msa0046670:intron 40.0%
TAAATGTGAGGGGCTGAATT+GGG - chr1_1:78940694-78940713 None:intergenic 40.0%
ATAAATGTGAGGGGCTGAAT+TGG - chr1_1:78940695-78940714 None:intergenic 40.0%
! TTTTTGTCGGGGACTAGATT+AGG - chr1_1:78940725-78940744 None:intergenic 40.0%
ACCCCTGTATGAAAATGTCA+TGG - chr1_1:78940764-78940783 None:intergenic 40.0%
TCGTGCTGTCTTGAATGATT+TGG + chr1_1:78940942-78940961 Msa0046670:intron 40.0%
TTCGAACGACACATAACAGT+GGG - chr1_1:78941083-78941102 None:intergenic 40.0%
AATAAGGGCAGAAGTGGTTT+AGG + chr1_1:78941205-78941224 Msa0046670:intron 40.0%
TTGTCCAACAATTGGTTGAC+CGG + chr1_1:78941309-78941328 Msa0046670:five_prime_UTR 40.0%
TTGACCGGAAGAATACAAAC+TGG + chr1_1:78941324-78941343 Msa0046670:five_prime_UTR 40.0%
GAGACCAGTTTGTATTCTTC+CGG - chr1_1:78941331-78941350 None:intergenic 40.0%
! GCTTGACCTTTCTGAAAGTA+CGG + chr1_1:78941406-78941425 Msa0046670:five_prime_UTR 40.0%
CATACTCCGTACTTTCAGAA+AGG - chr1_1:78941415-78941434 None:intergenic 40.0%
CCAAAGGATAAATTTCACCC+AGG - chr1_1:78941568-78941587 None:intergenic 40.0%
CCTGGGTGAAATTTATCCTT+TGG + chr1_1:78941565-78941584 Msa0046670:five_prime_UTR 40.0%
GGTGAAATTTATCCTTTGGG+AGG + chr1_1:78941569-78941588 Msa0046670:five_prime_UTR 40.0%
GATTTAGTTGATCCTAGCAC+TGG + chr1_1:78941608-78941627 Msa0046670:five_prime_UTR 40.0%
AACAAAGTCCTCCCACAAAA+CGG - chr1_1:78941659-78941678 None:intergenic 40.0%
!! TTCTGCTGTTTCACCTTTCA+AGG + chr1_1:78941806-78941825 Msa0046670:intron 40.0%
! CATCCCTGTCAACTTTAAGA+AGG - chr1_1:78942451-78942470 None:intergenic 40.0%
TAGAGTGGAACTTGGACTTA+TGG + chr1_1:78942760-78942779 Msa0046670:intron 40.0%
TTAGTTCCTGCTGGACTAAA+TGG - chr1_1:78942920-78942939 None:intergenic 40.0%
! TATGTAGGTTTAGTTCCTGC+TGG - chr1_1:78942929-78942948 None:intergenic 40.0%
GCTCTCACAATTAGGTATGT+AGG - chr1_1:78942944-78942963 None:intergenic 40.0%
!! AAATGCGAAGTGTTGCATAG+TGG - chr1_1:78942978-78942997 None:intergenic 40.0%
AGAAGGAAAAGGTTGGAAGT+TGG - chr1_1:78943188-78943207 None:intergenic 40.0%
GATTGGAAGAAGGAAAAGGT+TGG - chr1_1:78943195-78943214 None:intergenic 40.0%
! ACCTTTTCCTTCTTCCAATC+TGG + chr1_1:78943195-78943214 Msa0046670:intron 40.0%
TCCAGATTGGAAGAAGGAAA+AGG - chr1_1:78943199-78943218 None:intergenic 40.0%
! TTTTCCTTCTTCCAATCTGG+AGG + chr1_1:78943198-78943217 Msa0046670:intron 40.0%
ATTTCCTCCAGATTGGAAGA+AGG - chr1_1:78943205-78943224 None:intergenic 40.0%
TGTGCCTGTATAACAGAAAC+TGG + chr1_1:78943424-78943443 Msa0046670:intron 40.0%
GTGCCTGTATAACAGAAACT+GGG + chr1_1:78943425-78943444 Msa0046670:intron 40.0%
TGCCTGTATAACAGAAACTG+GGG + chr1_1:78943426-78943445 Msa0046670:intron 40.0%
AACCCCAGTTTCTGTTATAC+AGG - chr1_1:78943431-78943450 None:intergenic 40.0%
ATGGAGAAGAAATGTCCAGA+TGG + chr1_1:78943500-78943519 Msa0046670:five_prime_UTR 40.0%
TCAAATCACATTCCACGAGA+TGG - chr1_1:78943644-78943663 None:intergenic 40.0%
TGTAGTCATGAACCAGAGAT+AGG + chr1_1:78943907-78943926 Msa0046670:intron 40.0%
! ATTGAACCATCTTTGGAGGT+TGG - chr1_1:78943976-78943995 None:intergenic 40.0%
AGATGGTTCAATTGCCTATC+TGG + chr1_1:78943984-78944003 Msa0046670:intron 40.0%
ACACCAATAACAGTCTGAGT+AGG + chr1_1:78944509-78944528 Msa0046670:intron 40.0%
ACTCCTACTCAGACTGTTAT+TGG - chr1_1:78944515-78944534 None:intergenic 40.0%
!!! TTTTAATTTGCCAGCGTCTC+TGG + chr1_1:78944783-78944802 Msa0046670:intron 40.0%
! ATCTAGGTGCTATAATGGTG+TGG + chr1_1:78944863-78944882 Msa0046670:five_prime_UTR 40.0%
AGTGCAAACCTCAGAAAAAG+AGG - chr1_1:78945213-78945232 None:intergenic 40.0%
! AGTAAAGTGAGCTCTAATCC+AGG - chr1_1:78945253-78945272 None:intergenic 40.0%
!! TGGTTCTAAAACACAGCAGT+AGG - chr1_1:78945296-78945315 None:intergenic 40.0%
CGGTTCTCCAACTTTAAACA+TGG - chr1_1:78945316-78945335 None:intergenic 40.0%
! ATATCCAATAGAGCACCATC+AGG - chr1_1:78945480-78945499 None:intergenic 40.0%
TGGTGTGCATATCTATACCT+CGG - chr1_1:78945550-78945569 None:intergenic 40.0%
TCGTTTAATGTACATGCCAG+GGG - chr1_1:78946037-78946056 None:intergenic 40.0%
CTCGTTTAATGTACATGCCA+GGG - chr1_1:78946038-78946057 None:intergenic 40.0%
GCGTTACAACACTTTATGGA+TGG - chr1_1:78946133-78946152 None:intergenic 40.0%
TAACTCAGATCCCTTCGATA+TGG - chr1_1:78946365-78946384 None:intergenic 40.0%
GGGATCTGAGTTACAAATAG+AGG + chr1_1:78946372-78946391 Msa0046670:five_prime_UTR 40.0%
CTTCCATTGACCTGGAATAA+AGG - chr1_1:78946504-78946523 None:intergenic 40.0%
! CATTTTCGGCTATTATGACC+AGG - chr1_1:78946527-78946546 None:intergenic 40.0%
GTGAATCCATACTGCATCAT+GGG + chr1_1:78946577-78946596 Msa0046670:intron 40.0%
!! GAGCTTCTTGTTACTTTGCT+AGG + chr1_1:78946704-78946723 Msa0046670:intron 40.0%
!! TCTTGTTACTTTGCTAGGTG+TGG + chr1_1:78946709-78946728 Msa0046670:intron 40.0%
!! AATGTCAAGGTGTTGAACGA+GGG + chr1_1:78946748-78946767 Msa0046670:CDS 40.0%
TGTTGAACGAGGGAATTGAT+TGG + chr1_1:78946758-78946777 Msa0046670:CDS 40.0%
GAGGGAATTGATTGGAGTTA+TGG + chr1_1:78946766-78946785 Msa0046670:CDS 40.0%
GGAATTGATTGGAGTTATGG+TGG + chr1_1:78946769-78946788 Msa0046670:CDS 40.0%
ACATGATGTGAAAAGGTCTG+AGG + chr1_1:78946807-78946826 Msa0046670:CDS 40.0%
AGCTACTGATGTTGTCTTAC+AGG + chr1_1:78946867-78946886 Msa0046670:CDS 40.0%
ATACAATACCACCCACACAT+TGG + chr1_1:78946944-78946963 Msa0046670:intron 40.0%
TACAATACCACCCACACATT+GGG + chr1_1:78946945-78946964 Msa0046670:intron 40.0%
! CCTTTTCAATCGGATCTAAC+TGG - chr1_1:78947579-78947598 None:intergenic 40.0%
CCAGTTAGATCCGATTGAAA+AGG + chr1_1:78947576-78947595 Msa0046670:three_prime_UTR 40.0%
! TCCGATTGAAAAGGGTATGA+TGG + chr1_1:78947585-78947604 Msa0046670:three_prime_UTR 40.0%
CACTGGGATTACAAGATAGA+AGG + chr1_1:78947622-78947641 Msa0046670:three_prime_UTR 40.0%
! TCATGGTTCACAGTTGATGT+TGG + chr1_1:78947712-78947731 Msa0046670:three_prime_UTR 40.0%
! CATGGTTCACAGTTGATGTT+GGG + chr1_1:78947713-78947732 Msa0046670:three_prime_UTR 40.0%
! ATGGTTCACAGTTGATGTTG+GGG + chr1_1:78947714-78947733 Msa0046670:three_prime_UTR 40.0%
ATTGAGAGGAATGCAAGCAA+TGG + chr1_1:78947903-78947922 Msa0046670:three_prime_UTR 40.0%
GGCGACTTACAACAGAAAAT+GGG - chr1_1:78948013-78948032 None:intergenic 40.0%
TGGCGACTTACAACAGAAAA+TGG - chr1_1:78948014-78948033 None:intergenic 40.0%
ATGAGGATATACCGTGAAGG+AGG - chr1_1:78939486-78939505 None:intergenic 45.0%
GCTATGAGGATATACCGTGA+AGG - chr1_1:78939489-78939508 None:intergenic 45.0%
! AGGGGGTGTGAAGATGAATT+TGG - chr1_1:78939545-78939564 None:intergenic 45.0%
AAGTGAAGTGGAGTGAAGCA+TGG - chr1_1:78939648-78939667 None:intergenic 45.0%
! GGTGGTGGTGATAATTCCAA+TGG - chr1_1:78939842-78939861 None:intergenic 45.0%
!! CAGAAATGCTGGACTAGCTA+GGG + chr1_1:78940000-78940019 Msa0046670:five_prime_UTR 45.0%
! GTTGAAGTGTTTGGTAGCTG+CGG + chr1_1:78940063-78940082 Msa0046670:five_prime_UTR 45.0%
! TTGAAGTGTTTGGTAGCTGC+GGG + chr1_1:78940064-78940083 Msa0046670:five_prime_UTR 45.0%
! CAAGAGCATGTGTTGTGTTC+GGG + chr1_1:78940088-78940107 Msa0046670:five_prime_UTR 45.0%
!! GAAGAGTGCGTTTTATGCTC+TGG + chr1_1:78940159-78940178 Msa0046670:five_prime_UTR 45.0%
GGCGAAGATGATTGAGAAGA+TGG + chr1_1:78940180-78940199 Msa0046670:five_prime_UTR 45.0%
!! GGTAATGGAAATTCTGGTGG+TGG + chr1_1:78940208-78940227 Msa0046670:five_prime_UTR 45.0%
!!! GGAAATTCTGGTGGTGGTTT+TGG + chr1_1:78940214-78940233 Msa0046670:five_prime_UTR 45.0%
GATTGCATTGGAGGAGTGAT+TGG + chr1_1:78940313-78940332 Msa0046670:five_prime_UTR 45.0%
TGGTTCCCGTATAATTGGAG+TGG - chr1_1:78940469-78940488 None:intergenic 45.0%
CTCCAATTATACGGGAACCA+AGG + chr1_1:78940469-78940488 Msa0046670:intron 45.0%
TGGCAATGGTTGGAGTTATG+TGG + chr1_1:78940503-78940522 Msa0046670:intron 45.0%
ACATAACAGTGGGAATGGAC+AGG - chr1_1:78941073-78941092 None:intergenic 45.0%
ACGACACATAACAGTGGGAA+TGG - chr1_1:78941078-78941097 None:intergenic 45.0%
GTTCGAACGACACATAACAG+TGG - chr1_1:78941084-78941103 None:intergenic 45.0%
! GGTTCTAATAAGGGCAGAAG+TGG + chr1_1:78941199-78941218 Msa0046670:intron 45.0%
TCTTCCGGTCAACCAATTGT+TGG - chr1_1:78941316-78941335 None:intergenic 45.0%
CACATGCACGAAGTGAAAGA+AGG + chr1_1:78941353-78941372 Msa0046670:five_prime_UTR 45.0%
!! GGGCATCGATTCCCAAAATT+TGG - chr1_1:78941379-78941398 None:intergenic 45.0%
AACCTCTATACCCCATAGAG+CGG - chr1_1:78941447-78941466 None:intergenic 45.0%
GGATAAATTTCACCCAGGTC+TGG - chr1_1:78941563-78941582 None:intergenic 45.0%
! GTTTTGTGGGAGGACTTTGT+TGG + chr1_1:78941658-78941677 Msa0046670:five_prime_UTR 45.0%
ACAGGGAAGTGATGTGTTTG+TGG - chr1_1:78941914-78941933 None:intergenic 45.0%
TGCGAAACACTCTCTTGGTT+TGG + chr1_1:78941933-78941952 Msa0046670:five_prime_UTR 45.0%
!! ACACTCTCTTGGTTTGGAAG+AGG + chr1_1:78941939-78941958 Msa0046670:five_prime_UTR 45.0%
TGGAAACTTGCCCATGACAA+AGG + chr1_1:78942168-78942187 Msa0046670:five_prime_UTR 45.0%
!! TTGGCCTTGCAGTAATGTTG+TGG + chr1_1:78942333-78942352 Msa0046670:intron 45.0%
TGGAATGAAGTGGGGCAAAA+TGG + chr1_1:78942686-78942705 Msa0046670:intron 45.0%
ACTTGGACTTATGGCTGATC+TGG + chr1_1:78942769-78942788 Msa0046670:intron 45.0%
CTTATGGCTGATCTGGTCAA+TGG + chr1_1:78942776-78942795 Msa0046670:intron 45.0%
TTGACTGATCAACCTGGTTC+AGG - chr1_1:78942858-78942877 None:intergenic 45.0%
!!! GTCGTTTTGACTGATCAACC+TGG - chr1_1:78942864-78942883 None:intergenic 45.0%
TTGATCAGTCAAAACGACCC+TGG + chr1_1:78942866-78942885 Msa0046670:intron 45.0%
GCATGCAATTTCCTCCAGAT+TGG - chr1_1:78943212-78943231 None:intergenic 45.0%
AGAAATGTCCAGATGGCAAC+TGG + chr1_1:78943507-78943526 Msa0046670:five_prime_UTR 45.0%
GAAATGTCCAGATGGCAACT+GGG + chr1_1:78943508-78943527 Msa0046670:five_prime_UTR 45.0%
CTGATCTAGGAACCTATCTC+TGG - chr1_1:78943922-78943941 None:intergenic 45.0%
CAGAGATAGGTTCCTAGATC+AGG + chr1_1:78943920-78943939 Msa0046670:intron 45.0%
! CCATCTTTGGAGGTTGGATT+GGG - chr1_1:78943970-78943989 None:intergenic 45.0%
! ACCATCTTTGGAGGTTGGAT+TGG - chr1_1:78943971-78943990 None:intergenic 45.0%
GGCAATTGAACCATCTTTGG+AGG - chr1_1:78943980-78943999 None:intergenic 45.0%
! AGGTGCTATAATGGTGTGGA+AGG + chr1_1:78944867-78944886 Msa0046670:five_prime_UTR 45.0%
GGTGTGCATATCTATACCTC+GGG - chr1_1:78945549-78945568 None:intergenic 45.0%
ATCCTTCTTCATCCTGCTCT+TGG + chr1_1:78945829-78945848 Msa0046670:five_prime_UTR 45.0%
GCTCGTTTAATGTACATGCC+AGG - chr1_1:78946039-78946058 None:intergenic 45.0%
! TTGCTGTGACAGTTTTACGG+TGG + chr1_1:78946337-78946356 Msa0046670:intron 45.0%
TTACGGTGGTTCCATATCGA+AGG + chr1_1:78946351-78946370 Msa0046670:five_prime_UTR 45.0%
TACGGTGGTTCCATATCGAA+GGG + chr1_1:78946352-78946371 Msa0046670:five_prime_UTR 45.0%
! TAGAGGTTGCAGAGCTCTTT+TGG + chr1_1:78946389-78946408 Msa0046670:five_prime_UTR 45.0%
GTGACTTGACCCTTTATTCC+AGG + chr1_1:78946491-78946510 Msa0046670:intron 45.0%
GACCCTTTATTCCAGGTCAA+TGG + chr1_1:78946498-78946517 Msa0046670:intron 45.0%
GGTGAATCCATACTGCATCA+TGG + chr1_1:78946576-78946595 Msa0046670:intron 45.0%
!! GAATGTCAAGGTGTTGAACG+AGG + chr1_1:78946747-78946766 Msa0046670:CDS 45.0%
AACAGTCAGACCCAATGTGT+GGG - chr1_1:78946958-78946977 None:intergenic 45.0%
AAACAGTCAGACCCAATGTG+TGG - chr1_1:78946959-78946978 None:intergenic 45.0%
!! TGACTACTAGGTCGGTTTGA+TGG - chr1_1:78947190-78947209 None:intergenic 45.0%
TGAGTAGGTGACTACTAGGT+CGG - chr1_1:78947198-78947217 None:intergenic 45.0%
AAGCAACGGTTAAGAGACCT+GGG - chr1_1:78947440-78947459 None:intergenic 45.0%
AAAGCAACGGTTAAGAGACC+TGG - chr1_1:78947441-78947460 None:intergenic 45.0%
!! GAAAAGGGTATGATGGACAG+TGG + chr1_1:78947592-78947611 Msa0046670:three_prime_UTR 45.0%
CAGACATCTGATGTGGTTAG+TGG - chr1_1:78947683-78947702 None:intergenic 45.0%
!!! GTTATAATTTTTAAAAAATT+TGG + chr1_1:78943072-78943091 Msa0046670:intron 5.0%
!!! ATTTTATGTATAAATTAATT+TGG + chr1_1:78945574-78945593 Msa0046670:intron 5.0%
!!! AGTTTATTTTATTTATTTTT+AGG - chr1_1:78947289-78947308 None:intergenic 5.0%
CACTTCTTCCTCCTCCTTCA+CGG + chr1_1:78939472-78939491 Msa0046670:five_prime_UTR 50.0%
AGGATATACCGTGAAGGAGG+AGG - chr1_1:78939483-78939502 None:intergenic 50.0%
GTCATCAACATGTTGCCACG+TGG + chr1_1:78939799-78939818 Msa0046670:five_prime_UTR 50.0%
CTGTAGAAATACGTGCCACG+TGG - chr1_1:78939817-78939836 None:intergenic 50.0%
GAATTATCACCACCACCTCC+CGG + chr1_1:78939845-78939864 Msa0046670:five_prime_UTR 50.0%
AAATTGAATCCGGGAGGTGG+TGG - chr1_1:78939857-78939876 None:intergenic 50.0%
TTCGCGGCGGAAATTGAATC+CGG - chr1_1:78939867-78939886 None:intergenic 50.0%
AGGTGAGTCTGGTGATTTCG+CGG - chr1_1:78939883-78939902 None:intergenic 50.0%
!! CTTGTCGTTGAGAGTATCGC+AGG - chr1_1:78939927-78939946 None:intergenic 50.0%
! TAGTCCAGCATTTCTGGAGG+AGG - chr1_1:78939996-78940015 None:intergenic 50.0%
! AGCTAGTCCAGCATTTCTGG+AGG - chr1_1:78939999-78940018 None:intergenic 50.0%
CCTAGCTAGTCCAGCATTTC+TGG - chr1_1:78940002-78940021 None:intergenic 50.0%
!! CCAGAAATGCTGGACTAGCT+AGG + chr1_1:78939999-78940018 Msa0046670:five_prime_UTR 50.0%
!! CTAGGGTTTTATCGACGCTG+CGG + chr1_1:78940017-78940036 Msa0046670:five_prime_UTR 50.0%
GTGTTCGGGAGAAACTATGC+CGG + chr1_1:78940102-78940121 Msa0046670:five_prime_UTR 50.0%
!!! TTCTGGTGGTGGTTTTGGGA+TGG + chr1_1:78940219-78940238 Msa0046670:five_prime_UTR 50.0%
!!! TCTGGTGGTGGTTTTGGGAT+GGG + chr1_1:78940220-78940239 Msa0046670:five_prime_UTR 50.0%
!!! TGGTGGTTTTGGGATGGGTT+TGG + chr1_1:78940225-78940244 Msa0046670:five_prime_UTR 50.0%
!!! TGGTTTTGGGATGGGTTTGG+AGG + chr1_1:78940228-78940247 Msa0046670:five_prime_UTR 50.0%
AAACCAACTGGGAATCCGAG+TGG + chr1_1:78940629-78940648 Msa0046670:intron 50.0%
AGCCCCTCACATTTATCTCG+CGG + chr1_1:78940699-78940718 Msa0046670:intron 50.0%
AGGCCGCGAGATAAATGTGA+GGG - chr1_1:78940705-78940724 None:intergenic 50.0%
TAGGCCGCGAGATAAATGTG+AGG - chr1_1:78940706-78940725 None:intergenic 50.0%
TCAGAAAGGTCAAGCCCAGT+CGG - chr1_1:78941401-78941420 None:intergenic 50.0%
ATGCATCTCAAGCCGCTCTA+TGG + chr1_1:78941432-78941451 Msa0046670:five_prime_UTR 50.0%
TGCATCTCAAGCCGCTCTAT+GGG + chr1_1:78941433-78941452 Msa0046670:five_prime_UTR 50.0%
!! TTCTAGGGTTTGCCAGACCT+GGG + chr1_1:78941548-78941567 Msa0046670:intron 50.0%
!!! CTGCAATGCTGCCGTTTTGT+GGG + chr1_1:78941645-78941664 Msa0046670:five_prime_UTR 50.0%
TGTGGGAGGACTTTGTTGGA+AGG + chr1_1:78941662-78941681 Msa0046670:five_prime_UTR 50.0%
!! CCAAGAGAGTGTTTCGCACA+GGG - chr1_1:78941931-78941950 None:intergenic 50.0%
!! ACCAAGAGAGTGTTTCGCAC+AGG - chr1_1:78941932-78941951 None:intergenic 50.0%
GAATTGGCAGCCTCTTGTTC+CGG + chr1_1:78942065-78942084 Msa0046670:intron 50.0%
CATATGACACCATGACCACC+AGG - chr1_1:78942150-78942169 None:intergenic 50.0%
!! CTGGTGGTCATGGTGTCATA+TGG + chr1_1:78942148-78942167 Msa0046670:five_prime_UTR 50.0%
CAATAACGACGGACCTGACT+TGG - chr1_1:78942242-78942261 None:intergenic 50.0%
GCTGCCACAACATTACTGCA+AGG - chr1_1:78942340-78942359 None:intergenic 50.0%
AGCTACAGATGTAACCCTCC+TGG + chr1_1:78942357-78942376 Msa0046670:five_prime_UTR 50.0%
!! GATCGGTTTGCGTCAAGGAA+AGG + chr1_1:78942390-78942409 Msa0046670:five_prime_UTR 50.0%
CTTCTGTTGCACCTGAGACA+CGG - chr1_1:78943466-78943485 None:intergenic 50.0%
CCAGATGGCAACTGGGAATA+CGG + chr1_1:78943515-78943534 Msa0046670:five_prime_UTR 50.0%
CCCAATCCAACCTCCAAAGA+TGG + chr1_1:78943967-78943986 Msa0046670:intron 50.0%
TTACCATCTGCGGAGCTTGT+TGG + chr1_1:78944233-78944252 Msa0046670:five_prime_UTR 50.0%
! TAATTTGCCAGCGTCTCTGG+TGG + chr1_1:78944786-78944805 Msa0046670:intron 50.0%
TGGAGACAAGTCTTTACGCC+AGG + chr1_1:78945051-78945070 Msa0046670:five_prime_UTR 50.0%
! GAGCTCTAATCCAGGTATGC+TGG - chr1_1:78945245-78945264 None:intergenic 50.0%
AGTTGGAGAACCGCACTAGA+TGG + chr1_1:78945323-78945342 Msa0046670:intron 50.0%
! GACACCTGATGGTGCTCTAT+TGG + chr1_1:78945473-78945492 Msa0046670:intron 50.0%
GACCAAGAGCAGGATGAAGA+AGG - chr1_1:78945834-78945853 None:intergenic 50.0%
ATCCTGCTCTTGGTCCTCTT+TGG + chr1_1:78945839-78945858 Msa0046670:five_prime_UTR 50.0%
TCCTGCTCTTGGTCCTCTTT+GGG + chr1_1:78945840-78945859 Msa0046670:five_prime_UTR 50.0%
TGTCTGGTGACTTCCCAAAG+AGG - chr1_1:78945856-78945875 None:intergenic 50.0%
CGTGTCAAAACAAGTACCCC+TGG + chr1_1:78946018-78946037 Msa0046670:intron 50.0%
! AGGTTGCAGAGCTCTTTTGG+CGG + chr1_1:78946392-78946411 Msa0046670:five_prime_UTR 50.0%
! GCTCTTTTGGCGGAATGTTC+AGG + chr1_1:78946402-78946421 Msa0046670:exon 50.0%
ATTCCAGGTCAATGGAAGCC+TGG + chr1_1:78946506-78946525 Msa0046670:intron 50.0%
CCTTTGCCCATGATGCAGTA+TGG - chr1_1:78946586-78946605 None:intergenic 50.0%
CCATACTGCATCATGGGCAA+AGG + chr1_1:78946583-78946602 Msa0046670:intron 50.0%
TTTACCGAAGGCTAGGGATC+AGG - chr1_1:78946668-78946687 None:intergenic 50.0%
GTGCTGCAGATCATACTGCA+TGG + chr1_1:78946829-78946848 Msa0046670:CDS 50.0%
CAGGTGAGTAGGTGACTACT+AGG - chr1_1:78947202-78947221 None:intergenic 50.0%
!! GTATGATGGACAGTGGAAGC+TGG + chr1_1:78947599-78947618 Msa0046670:three_prime_UTR 50.0%
GATGTCTGCTGCGTGAATCA+TGG + chr1_1:78947695-78947714 Msa0046670:three_prime_UTR 50.0%
CGGAAATTGAATCCGGGAGG+TGG - chr1_1:78939860-78939879 None:intergenic 55.0%
TCGCGGCGGAAATTGAATCC+GGG - chr1_1:78939866-78939885 None:intergenic 55.0%
TGAGTCTGGTGATTTCGCGG+CGG - chr1_1:78939880-78939899 None:intergenic 55.0%
!! GTCGTTGAGAGTATCGCAGG+CGG - chr1_1:78939924-78939943 None:intergenic 55.0%
GGTTCCTCCTCCAGAAATGC+TGG + chr1_1:78939989-78940008 Msa0046670:five_prime_UTR 55.0%
!! GGTTTTATCGACGCTGCGGT+TGG + chr1_1:78940021-78940040 Msa0046670:five_prime_UTR 55.0%
ATCGACGCTGCGGTTGGATT+CGG + chr1_1:78940027-78940046 Msa0046670:five_prime_UTR 55.0%
GGGAGAAACTATGCCGGAGA+TGG + chr1_1:78940108-78940127 Msa0046670:five_prime_UTR 55.0%
ATCACGGACGACTCCATCTC+CGG - chr1_1:78940124-78940143 None:intergenic 55.0%
! GTCCGTGATGGCTTCTGGTT+CGG + chr1_1:78940135-78940154 Msa0046670:five_prime_UTR 55.0%
CACCGAACCAGAAGCCATCA+CGG - chr1_1:78940140-78940159 None:intergenic 55.0%
! AGACGTTGGCGCAAGTTGAG+AGG + chr1_1:78940284-78940303 Msa0046670:five_prime_UTR 55.0%
CTTCCACTCGGATTCCCAGT+TGG - chr1_1:78940635-78940654 None:intergenic 55.0%
GGCCGCGAGATAAATGTGAG+GGG - chr1_1:78940704-78940723 None:intergenic 55.0%
! TCGCGACCCATTTTAGACCC+TGG - chr1_1:78940875-78940894 None:intergenic 55.0%
AGAAAGGTCAAGCCCAGTCG+GGG - chr1_1:78941399-78941418 None:intergenic 55.0%
CAGAAAGGTCAAGCCCAGTC+GGG - chr1_1:78941400-78941419 None:intergenic 55.0%
GCATCTCAAGCCGCTCTATG+GGG + chr1_1:78941434-78941453 Msa0046670:five_prime_UTR 55.0%
AGCCGCTCTATGGGGTATAG+AGG + chr1_1:78941442-78941461 Msa0046670:five_prime_UTR 55.0%
CAGGTCTGGCAAACCCTAGA+AGG - chr1_1:78941549-78941568 None:intergenic 55.0%
!! CTTCTAGGGTTTGCCAGACC+TGG + chr1_1:78941547-78941566 Msa0046670:intron 55.0%
CAAAACGGCAGCATTGCAGC+AGG - chr1_1:78941644-78941663 None:intergenic 55.0%
!!! GCTGCAATGCTGCCGTTTTG+TGG + chr1_1:78941644-78941663 Msa0046670:five_prime_UTR 55.0%
!!! CAATGCTGCCGTTTTGTGGG+AGG + chr1_1:78941648-78941667 Msa0046670:five_prime_UTR 55.0%
CCCTGTGCGAAACACTCTCT+TGG + chr1_1:78941928-78941947 Msa0046670:five_prime_UTR 55.0%
CAGCCTCTTGTTCCGGTTGT+CGG + chr1_1:78942072-78942091 Msa0046670:intron 55.0%
! CCATCTTCTGCACCGACAAC+CGG - chr1_1:78942087-78942106 None:intergenic 55.0%
CGGTTGTCGGTGCAGAAGAT+GGG + chr1_1:78942085-78942104 Msa0046670:five_prime_UTR 55.0%
TGCAGAAGATGGGCAGTGGT+TGG + chr1_1:78942095-78942114 Msa0046670:five_prime_UTR 55.0%
! GGCTTGCTCAAGGGACTGAA+CGG - chr1_1:78942129-78942148 None:intergenic 55.0%
TTCAGTCCCTTGAGCAAGCC+TGG + chr1_1:78942129-78942148 Msa0046670:five_prime_UTR 55.0%
! TGACCACCAGGCTTGCTCAA+GGG - chr1_1:78942138-78942157 None:intergenic 55.0%
! ATGACCACCAGGCTTGCTCA+AGG - chr1_1:78942139-78942158 None:intergenic 55.0%
TTGAGCAAGCCTGGTGGTCA+TGG + chr1_1:78942138-78942157 Msa0046670:five_prime_UTR 55.0%
!! TAACCCTCCTGGCCTTAGCA+GGG + chr1_1:78942368-78942387 Msa0046670:five_prime_UTR 55.0%
ACGCAAACCGATCCCTGCTA+AGG - chr1_1:78942383-78942402 None:intergenic 55.0%
CAGCTAGAACAGCCTGAACC+AGG + chr1_1:78942843-78942862 Msa0046670:intron 55.0%
CGTGTCTCAGGTGCAACAGA+AGG + chr1_1:78943464-78943483 Msa0046670:five_prime_UTR 55.0%
CCGTATTCCCAGTTGCCATC+TGG - chr1_1:78943518-78943537 None:intergenic 55.0%
GATCCAACAAGCTCCGCAGA+TGG - chr1_1:78944239-78944258 None:intergenic 55.0%
TCCCAAAGAGGACCAAGAGC+AGG - chr1_1:78945844-78945863 None:intergenic 55.0%
TGACCAGGCTTCCATTGACC+TGG - chr1_1:78946512-78946531 None:intergenic 55.0%
AGTCAGACCCAATGTGTGGG+TGG - chr1_1:78946955-78946974 None:intergenic 55.0%
AAGATCATGCCAGGAAGCCC+AGG + chr1_1:78947420-78947439 Msa0046670:CDS 55.0%
GTTAAGAGACCTGGGCTTCC+TGG - chr1_1:78947432-78947451 None:intergenic 55.0%
CACGCAGCAGACATCTGATG+TGG - chr1_1:78947690-78947709 None:intergenic 55.0%
CGGCGGAAATTGAATCCGGG+AGG - chr1_1:78939863-78939882 None:intergenic 60.0%
ATCACGGAGGGAGGTGAGTC+TGG - chr1_1:78939894-78939913 None:intergenic 60.0%
GGAGATGGAGTCGTCCGTGA+TGG + chr1_1:78940123-78940142 Msa0046670:five_prime_UTR 60.0%
GAGTCGTCCGTGATGGCTTC+TGG + chr1_1:78940130-78940149 Msa0046670:five_prime_UTR 60.0%
TTGGGAATCGATGCCCCGAC+TGG + chr1_1:78941383-78941402 Msa0046670:five_prime_UTR 60.0%
TGGGAATCGATGCCCCGACT+GGG + chr1_1:78941384-78941403 Msa0046670:five_prime_UTR 60.0%
CTGTCTGCAGAGCCTCCCAA+AGG - chr1_1:78941584-78941603 None:intergenic 60.0%
GGCAGGCATTCACCAGTGCT+AGG - chr1_1:78941623-78941642 None:intergenic 60.0%
! GCACCGACAACCGGAACAAG+AGG - chr1_1:78942078-78942097 None:intergenic 60.0%
CCGGTTGTCGGTGCAGAAGA+TGG + chr1_1:78942084-78942103 Msa0046670:five_prime_UTR 60.0%
TCGGTGCAGAAGATGGGCAG+TGG + chr1_1:78942091-78942110 Msa0046670:five_prime_UTR 60.0%
AGTCCCTTGAGCAAGCCTGG+TGG + chr1_1:78942132-78942151 Msa0046670:five_prime_UTR 60.0%
GTGCAACTGTGCGCCAAGTC+AGG + chr1_1:78942226-78942245 Msa0046670:five_prime_UTR 60.0%
!! GTAACCCTCCTGGCCTTAGC+AGG + chr1_1:78942367-78942386 Msa0046670:five_prime_UTR 60.0%
GATCCCTGCTAAGGCCAGGA+GGG - chr1_1:78942374-78942393 None:intergenic 60.0%
!! CTCCTGGCCTTAGCAGGGAT+CGG + chr1_1:78942373-78942392 Msa0046670:five_prime_UTR 60.0%
AACCGATCCCTGCTAAGGCC+AGG - chr1_1:78942378-78942397 None:intergenic 60.0%
!! GCAGGGATCGGTTTGCGTCA+AGG + chr1_1:78942385-78942404 Msa0046670:five_prime_UTR 60.0%
GCATCCTGTGACCGTGTCTC+AGG + chr1_1:78943452-78943471 Msa0046670:five_prime_UTR 60.0%
TGCACCTGAGACACGGTCAC+AGG - chr1_1:78943459-78943478 None:intergenic 60.0%
! GCCTCCTGATCCCTAGCCTT+CGG + chr1_1:78946661-78946680 Msa0046670:intron 60.0%
ACCGAAGGCTAGGGATCAGG+AGG - chr1_1:78946665-78946684 None:intergenic 60.0%
TGGACAGTGGAAGCTGGCAC+TGG + chr1_1:78947605-78947624 Msa0046670:three_prime_UTR 60.0%
GGACAGTGGAAGCTGGCACT+GGG + chr1_1:78947606-78947625 Msa0046670:three_prime_UTR 60.0%
GGCGAGCTTATCACGGAGGG+AGG - chr1_1:78939903-78939922 None:intergenic 65.0%
GGCGGCGAGCTTATCACGGA+GGG - chr1_1:78939906-78939925 None:intergenic 65.0%
AGGCGGCGAGCTTATCACGG+AGG - chr1_1:78939907-78939926 None:intergenic 65.0%
CGCAGGCGGCGAGCTTATCA+CGG - chr1_1:78939910-78939929 None:intergenic 65.0%
ACGGCAGCATTGCAGCAGGC+AGG - chr1_1:78941640-78941659 None:intergenic 65.0%
CGATCCCTGCTAAGGCCAGG+AGG - chr1_1:78942375-78942394 None:intergenic 65.0%
CAGTCTGCCACCAGAGACGC+TGG - chr1_1:78944796-78944815 None:intergenic 65.0%
CAGCGTCTCTGGTGGCAGAC+TGG + chr1_1:78944794-78944813 Msa0046670:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78939460 78948080 78939460 ID=Msa0046670;Name=Msa0046670
chr1_1 mRNA 78939460 78948080 78939460 ID=Msa0046670-mRNA-1;Parent=Msa0046670;Name=Msa0046670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=2360|0.8|0.93|0.93|1|1|16|613|87
chr1_1 exon 78939460 78940335 78939460 ID=Msa0046670-mRNA-1:exon:27169;Parent=Msa0046670-mRNA-1
chr1_1 exon 78941283 78941463 78941283 ID=Msa0046670-mRNA-1:exon:27170;Parent=Msa0046670-mRNA-1
chr1_1 exon 78941554 78941703 78941554 ID=Msa0046670-mRNA-1:exon:27171;Parent=Msa0046670-mRNA-1
chr1_1 exon 78941828 78941989 78941828 ID=Msa0046670-mRNA-1:exon:27172;Parent=Msa0046670-mRNA-1
chr1_1 exon 78942075 78942247 78942075 ID=Msa0046670-mRNA-1:exon:27173;Parent=Msa0046670-mRNA-1
chr1_1 exon 78942345 78942411 78942345 ID=Msa0046670-mRNA-1:exon:27174;Parent=Msa0046670-mRNA-1
chr1_1 exon 78943440 78943603 78943440 ID=Msa0046670-mRNA-1:exon:27175;Parent=Msa0046670-mRNA-1
chr1_1 exon 78944187 78944345 78944187 ID=Msa0046670-mRNA-1:exon:27176;Parent=Msa0046670-mRNA-1
chr1_1 exon 78944797 78944888 78944797 ID=Msa0046670-mRNA-1:exon:27177;Parent=Msa0046670-mRNA-1
chr1_1 exon 78944978 78945072 78944978 ID=Msa0046670-mRNA-1:exon:27178;Parent=Msa0046670-mRNA-1
chr1_1 exon 78945474 78945551 78945474 ID=Msa0046670-mRNA-1:exon:27179;Parent=Msa0046670-mRNA-1
chr1_1 exon 78945784 78945879 78945784 ID=Msa0046670-mRNA-1:exon:27180;Parent=Msa0046670-mRNA-1
chr1_1 exon 78946349 78946423 78946349 ID=Msa0046670-mRNA-1:exon:27181;Parent=Msa0046670-mRNA-1
chr1_1 exon 78946726 78946888 78946726 ID=Msa0046670-mRNA-1:exon:27182;Parent=Msa0046670-mRNA-1
chr1_1 exon 78946931 78946936 78946931 ID=Msa0046670-mRNA-1:exon:27183;Parent=Msa0046670-mRNA-1
chr1_1 exon 78947381 78948080 78947381 ID=Msa0046670-mRNA-1:exon:27184;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78939460 78940335 78939460 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78941283 78941463 78941283 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78941554 78941703 78941554 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78941828 78941989 78941828 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78942075 78942247 78942075 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78942345 78942411 78942345 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78943440 78943603 78943440 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78944187 78944345 78944187 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78944797 78944888 78944797 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78944978 78945072 78944978 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78945474 78945551 78945474 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78945784 78945879 78945784 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 five_prime_UTR 78946349 78946415 78946349 ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1 CDS 78946416 78946423 78946416 ID=Msa0046670-mRNA-1:cds;Parent=Msa0046670-mRNA-1
chr1_1 CDS 78946726 78946888 78946726 ID=Msa0046670-mRNA-1:cds;Parent=Msa0046670-mRNA-1
chr1_1 CDS 78946931 78946936 78946931 ID=Msa0046670-mRNA-1:cds;Parent=Msa0046670-mRNA-1
chr1_1 CDS 78947381 78947467 78947381 ID=Msa0046670-mRNA-1:cds;Parent=Msa0046670-mRNA-1
chr1_1 three_prime_UTR 78947468 78948080 78947468 ID=Msa0046670-mRNA-1:three_prime_utr;Parent=Msa0046670-mRNA-1
Gene Sequence

>Msa0046670

ATGTTCAGGTGTGGAAGATGTAAATTGCAGAATGTCAAGGTGTTGAACGAGGGAATTGATTGGAGTTATGGTGGAAATGTGTATTGGAAACATGATGTGAAAAGGTCTGAGGTGCTGCAGATCATACTGCATGGAAATGCTGAATTTGAAGCTACTGATGTTGTCTTACAGATGCAAGGAAATCATGTATTTGAAGTTCCAGATGGATACAAATTGAAGATCATGCCAGGAAGCCCAGGTCTCTTAACCGTTGCTTTATCATGA
Protein sequence

>Msa0046670

MFRCGRCKLQNVKVLNEGIDWSYGGNVYWKHDVKRSEVLQIILHGNAEFEATDVVLQMQGNHVFEVPDGYKLKIMPGSPGLLTVALS*