AlfalfaGEDB | Msa0046670

M. sativa cultivar zhongmu-4 / Msa0046670

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046670	XP_024635220.1	97.468	79	0	1	3	81	469	545	2.61e-44	160

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046670	sp\|F4IY62\|UGPA3_ARATH	62.500	80	28	1	2	81	768	845	8.58e-29	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046670	A0A072UYC6	97.468	79	0	1	3	81	752	828	2.33e-44	162

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0046670	0.844778	6.123155e-59	-8.615850e-47
Msa0000220	Msa0046670	0.855521	5.967846e-62	-8.615850e-47
Msa0001460	Msa0046670	0.819434	1.163730e-52	-8.615850e-47
Msa0005500	Msa0046670	0.800498	1.401046e-48	-8.615850e-47
Msa0005690	Msa0046670	0.840821	6.903293e-58	-8.615850e-47
Msa0007230	Msa0046670	0.821827	3.282224e-53	-8.615850e-47
Msa0008330	Msa0046670	0.806554	7.776700e-50	-8.615850e-47
Msa0009800	Msa0046670	0.826443	2.705260e-54	-8.615850e-47
Msa0009890	Msa0046670	0.820290	7.418103e-53	-8.615850e-47
Msa0012460	Msa0046670	0.804059	2.590877e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046670	MtrunA17_Chr3g0113901	97.468	79	0	1	3	81	757	833	4.54e-48	162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046670	AT3G56040.1	62.500	80	28	1	2	81	768	845	8.72e-30	110

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Find 259 sgRNAs with CRISPR-Local

Find 604 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACCTAATGTAGCAA+AGG	0.581998	1_1:-78947789	None:intergenic
AAAGCAACGGTTAAGAGACC+TGG	0.537538	1_1:-78947438	None:intergenic
AAATTGAATCCGGGAGGTGG+TGG	0.528692	1_1:-78939854	None:intergenic
AACAAAGTCCTCCCACAAAA+CGG	0.525949	1_1:-78941656	None:intergenic
AACAGTGATTCATGTTAAAT+CGG	0.377125	1_1:-78947530	None:intergenic
AACCGATCCCTGCTAAGGCC+AGG	0.504929	1_1:-78942375	None:intergenic
AACCTCTATACCCCATAGAG+CGG	0.653508	1_1:-78941444	None:intergenic
AACGAAAAGAAAAGAGAAAA+CGG	0.505393	1_1:-78939685	None:intergenic
AACTTGTCATTATTGCAACA+GGG	0.628372	1_1:-78941875	None:intergenic
AAGAATGTGAATAGTATACC+AGG	0.575840	1_1:+78944263	Msa0046670:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGAAGAAGAAAATGAAGA+TGG	-	chr1_1:78939779-78939798	None:intergenic	30.0%
TAATTCCACTCCAATTATAC+GGG	+	chr1_1:78940461-78940480	Msa0046670:intron	30.0%
AGAAATTCTCCACAATATCA+AGG	-	chr1_1:78940535-78940554	None:intergenic	30.0%
TGGAGAATTTCTGTTAAATG+CGG	+	chr1_1:78940543-78940562	Msa0046670:intron	30.0%
TTATGTTATGGCTTAGATTG+AGG	+	chr1_1:78940589-78940608	Msa0046670:intron	30.0%
TTGTCCCCAATATGAAAAAA+TGG	+	chr1_1:78940821-78940840	Msa0046670:intron	30.0%
AAAATTGTGAGAGACTGAAT+TGG	+	chr1_1:78940896-78940915	Msa0046670:intron	30.0%
AAATTGTGAGAGACTGAATT+GGG	+	chr1_1:78940897-78940916	Msa0046670:intron	30.0%
GTTGTTATAATTGCATTACC+TGG	+	chr1_1:78941464-78941483	Msa0046670:intron	30.0%
TACATATGCTTCATACATAC+AGG	+	chr1_1:78941506-78941525	Msa0046670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	78939460	78948080	78939460	ID=Msa0046670;Name=Msa0046670
chr1_1	mRNA	78939460	78948080	78939460	ID=Msa0046670-mRNA-1;Parent=Msa0046670;Name=Msa0046670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=2360\|0.8\|0.93\|0.93\|1\|1\|16\|613\|87
chr1_1	exon	78939460	78940335	78939460	ID=Msa0046670-mRNA-1:exon:27169;Parent=Msa0046670-mRNA-1
chr1_1	exon	78941283	78941463	78941283	ID=Msa0046670-mRNA-1:exon:27170;Parent=Msa0046670-mRNA-1
chr1_1	exon	78941554	78941703	78941554	ID=Msa0046670-mRNA-1:exon:27171;Parent=Msa0046670-mRNA-1
chr1_1	exon	78941828	78941989	78941828	ID=Msa0046670-mRNA-1:exon:27172;Parent=Msa0046670-mRNA-1
chr1_1	exon	78942075	78942247	78942075	ID=Msa0046670-mRNA-1:exon:27173;Parent=Msa0046670-mRNA-1
chr1_1	exon	78942345	78942411	78942345	ID=Msa0046670-mRNA-1:exon:27174;Parent=Msa0046670-mRNA-1
chr1_1	exon	78943440	78943603	78943440	ID=Msa0046670-mRNA-1:exon:27175;Parent=Msa0046670-mRNA-1
chr1_1	exon	78944187	78944345	78944187	ID=Msa0046670-mRNA-1:exon:27176;Parent=Msa0046670-mRNA-1
chr1_1	exon	78944797	78944888	78944797	ID=Msa0046670-mRNA-1:exon:27177;Parent=Msa0046670-mRNA-1
chr1_1	exon	78944978	78945072	78944978	ID=Msa0046670-mRNA-1:exon:27178;Parent=Msa0046670-mRNA-1
chr1_1	exon	78945474	78945551	78945474	ID=Msa0046670-mRNA-1:exon:27179;Parent=Msa0046670-mRNA-1
chr1_1	exon	78945784	78945879	78945784	ID=Msa0046670-mRNA-1:exon:27180;Parent=Msa0046670-mRNA-1
chr1_1	exon	78946349	78946423	78946349	ID=Msa0046670-mRNA-1:exon:27181;Parent=Msa0046670-mRNA-1
chr1_1	exon	78946726	78946888	78946726	ID=Msa0046670-mRNA-1:exon:27182;Parent=Msa0046670-mRNA-1
chr1_1	exon	78946931	78946936	78946931	ID=Msa0046670-mRNA-1:exon:27183;Parent=Msa0046670-mRNA-1
chr1_1	exon	78947381	78948080	78947381	ID=Msa0046670-mRNA-1:exon:27184;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78939460	78940335	78939460	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78941283	78941463	78941283	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78941554	78941703	78941554	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78941828	78941989	78941828	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78942075	78942247	78942075	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78942345	78942411	78942345	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78943440	78943603	78943440	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78944187	78944345	78944187	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78944797	78944888	78944797	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78944978	78945072	78944978	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78945474	78945551	78945474	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78945784	78945879	78945784	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	five_prime_UTR	78946349	78946415	78946349	ID=Msa0046670-mRNA-1:five_prime_utr;Parent=Msa0046670-mRNA-1
chr1_1	CDS	78946416	78946423	78946416	ID=Msa0046670-mRNA-1:cds;Parent=Msa0046670-mRNA-1
chr1_1	CDS	78946726	78946888	78946726	ID=Msa0046670-mRNA-1:cds;Parent=Msa0046670-mRNA-1
chr1_1	CDS	78946931	78946936	78946931	ID=Msa0046670-mRNA-1:cds;Parent=Msa0046670-mRNA-1
chr1_1	CDS	78947381	78947467	78947381	ID=Msa0046670-mRNA-1:cds;Parent=Msa0046670-mRNA-1
chr1_1	three_prime_UTR	78947468	78948080	78947468	ID=Msa0046670-mRNA-1:three_prime_utr;Parent=Msa0046670-mRNA-1

Gene Sequence	>Msa0046670 ATGTTCAGGTGTGGAAGATGTAAATTGCAGAATGTCAAGGTGTTGAACGAGGGAATTGATTGGAGTTATGGTGGAAATGTGTATTGGAAACATGATGTGAAAAGGTCTGAGGTGCTGCAGATCATACTGCATGGAAATGCTGAATTTGAAGCTACTGATGTTGTCTTACAGATGCAAGGAAATCATGTATTTGAAGTTCCAGATGGATACAAATTGAAGATCATGCCAGGAAGCCCAGGTCTCTTAACCGTTGCTTTATCATGA
Protein sequence	>Msa0046670 MFRCGRCKLQNVKVLNEGIDWSYGGNVYWKHDVKRSEVLQIILHGNAEFEATDVVLQMQGNHVFEVPDGYKLKIMPGSPGLLTVALS*