AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0839730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0839730 MtrunA17_Chr5g0408241 96.020 201 8 0 5 205 13 213 1.41e-135 399
Msa0839730 MtrunA17_Chr8g0369761 54.680 203 87 1 3 205 1 198 1.87e-59 199
Msa0839730 MtrunA17_Chr4g0041761 35.948 153 93 3 56 204 21 172 2.23e-27 108
Msa0839730 MtrunA17_Chr7g0261561 32.298 161 101 4 48 205 7 162 3.61e-18 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0839730 AT4G19380.2 41.143 175 101 2 32 205 2 175 8.19e-41 147
Msa0839730 AT4G19380.1 45.522 134 72 1 72 205 1 133 1.21e-35 132
Msa0839730 AT4G28570.1 27.152 151 103 2 57 205 17 162 1.14e-14 72.4
Msa0839730 AT4G28570.2 27.152 151 103 2 57 205 17 162 1.14e-14 72.4
Msa0839730 AT3G23410.1 26.974 152 93 4 67 205 15 161 6.70e-14 70.1
Msa0839730 AT1G03990.1 27.097 155 104 3 59 204 20 174 1.09e-13 69.3

Find 47 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGGAAAGTGTGTATAAA+AGG 0.217807 5_4:+14885195 None:intergenic
TGGTTTCTGTCTACATGGTT+AGG 0.272649 5_4:-14885261 Msa0839730:CDS
TTGTTCTGAACAACATTCTA+AGG 0.279704 5_4:+14885112 None:intergenic
AACTTTAGTACCATTGTCAT+TGG 0.342432 5_4:+14885291 None:intergenic
TGGTACTAAAGTTGGTGTTA+TGG 0.374436 5_4:-14885281 Msa0839730:CDS
CGTTTGTGTAGAGGTAAATC+AGG 0.376447 5_4:+14885177 None:intergenic
ATGGGAAAATATACACGTTC+AGG 0.388465 5_4:+14886098 None:intergenic
ATAATTATATATTTATATCA+TGG 0.406658 5_4:+14886556 None:intergenic
CGTATTTCAGCTTCCATGGC+TGG 0.407420 5_4:-14886125 Msa0839730:CDS
TAGAAAGGATAGTTTCAGAT+TGG 0.419331 5_4:-14886369 Msa0839730:CDS
GGTTTCTGTCTACATGGTTA+GGG 0.431876 5_4:-14885260 Msa0839730:CDS
GGAAGCTGAAATACGGTAGA+AGG 0.433466 5_4:+14886133 None:intergenic
GCCAACAGATTATGCAATCT+TGG 0.434426 5_4:-14885155 Msa0839730:CDS
ATATATTTATATCATGGAAA+AGG 0.446628 5_4:+14886562 None:intergenic
AGAAAGGATAGTTTCAGATT+GGG 0.448247 5_4:-14886368 Msa0839730:CDS
CTACCGTATTTCAGCTTCCA+TGG 0.449137 5_4:-14886129 Msa0839730:CDS
TTACCTGAGTGAAGAAGATT+AGG 0.450249 5_4:+14885073 None:intergenic
GGAACAAAGTCATTGATAGA+AGG 0.463513 5_4:+14886185 None:intergenic
TAGGAAGGGTAGCTTTAGAA+AGG 0.469277 5_4:-14886384 Msa0839730:CDS
GGAAAATAGCTTGAGAGAGA+AGG 0.470547 5_4:+14886583 None:intergenic
GACATGGAGAATAGTAATAG+TGG 0.471196 5_4:-14886431 Msa0839730:CDS
AATGACAATGGTACTAAAGT+TGG 0.471554 5_4:-14885289 Msa0839730:CDS
GATTCGTCGTCGTCGGAGAC+AGG 0.475074 5_4:+14886164 None:intergenic
TCACAAACTCTCTTTCTGTT+AGG 0.475121 5_4:-14886247 Msa0839730:CDS
TGTTATGGTTTCTGTCTACA+TGG 0.479156 5_4:-14885266 Msa0839730:CDS
AAAAGAAACTATCGAGGGTA+TGG 0.489501 5_4:-14886494 Msa0839730:five_prime_UTR
CAGGGAAAGTGTGTATAAAA+GGG 0.494879 5_4:+14885196 None:intergenic
GAAAATAGCTTGAGAGAGAA+GGG 0.510226 5_4:+14886584 None:intergenic
GTGTATAAAAGGGAACTTTG+TGG 0.515128 5_4:+14885206 None:intergenic
CAGCCATGGAAGCTGAAATA+CGG 0.530516 5_4:+14886126 None:intergenic
ATCTGTTGGCGTTTGTGTAG+AGG 0.531304 5_4:+14885168 None:intergenic
AAGGATAGTTTCAGATTGGG+AGG 0.546950 5_4:-14886365 Msa0839730:CDS
ACGTTCAGGTGTTCCAGCCA+TGG 0.550679 5_4:+14886112 None:intergenic
ACCAAGATTGCATAATCTGT+TGG 0.551313 5_4:+14885154 None:intergenic
GATCACACAGTGGTTGAGCT+AGG 0.554204 5_4:-14886338 Msa0839730:CDS
AGTATCTGAGAGAGCAGTGA+GGG 0.572897 5_4:+14886214 None:intergenic
GTTGTTTATGTGCAGCTTGG+GGG 0.591555 5_4:-14885339 Msa0839730:intron
AAAAGTGGTAGCTTTAGGAA+GGG 0.598113 5_4:-14886398 Msa0839730:CDS
ATTATAGAGCAACATGGACA+TGG 0.609231 5_4:-14886447 Msa0839730:exon
TCTCCTAATCTTCTTCACTC+AGG 0.614451 5_4:-14885076 None:intergenic
AGCAGCGGATTCGTCGTCGT+CGG 0.630964 5_4:+14886157 None:intergenic
GTTTGTGTAGAGGTAAATCA+GGG 0.659201 5_4:+14885178 None:intergenic
ACTGATTCATCCAATGACAA+TGG 0.676312 5_4:-14885301 Msa0839730:CDS
GGAAGCATTATAGAGCAACA+TGG 0.691253 5_4:-14886453 Msa0839730:exon
TAGTATCTGAGAGAGCAGTG+AGG 0.721002 5_4:+14886213 None:intergenic
AATACGGTAGAAGGTAGCAG+CGG 0.736624 5_4:+14886142 None:intergenic
GGGAGGAAAAGATCACACAG+TGG 0.818391 5_4:-14886348 Msa0839730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTAAATAATTTTAACC+GGG + chr5_4:14885653-14885672 None:intergenic 10.0%
!!! ATATAAGTTTTTATATATAG+TGG - chr5_4:14885770-14885789 Msa0839730:intron 10.0%
!!! GATATATATTTTTAATTAGA+AGG - chr5_4:14886231-14886250 Msa0839730:CDS 10.0%
!!! TATATTAAATAATTTTAACC+GGG + chr5_4:14885653-14885672 None:intergenic 10.0%
!!! ATATAAGTTTTTATATATAG+TGG - chr5_4:14885770-14885789 Msa0839730:intron 10.0%
!!! GATATATATTTTTAATTAGA+AGG - chr5_4:14886231-14886250 Msa0839730:CDS 10.0%
!! ATATATTTATATCATGGAAA+AGG + chr5_4:14885108-14885127 None:intergenic 15.0%
!!! ATATTAAATAATTTTAACCG+GGG + chr5_4:14885652-14885671 None:intergenic 15.0%
!!! TTTTATGTCTTAAATTTTGT+TGG - chr5_4:14886012-14886031 Msa0839730:intron 15.0%
!! ATATATTTATATCATGGAAA+AGG + chr5_4:14885108-14885127 None:intergenic 15.0%
!!! ATATTAAATAATTTTAACCG+GGG + chr5_4:14885652-14885671 None:intergenic 15.0%
!!! TTTTATGTCTTAAATTTTGT+TGG - chr5_4:14886012-14886031 Msa0839730:intron 15.0%
!!! TATTAAATAATTTTAACCGG+GGG + chr5_4:14885651-14885670 None:intergenic 20.0%
!!! TGTTGTATGAATTAATGTTT+TGG - chr5_4:14886300-14886319 Msa0839730:CDS 20.0%
!!! TATGAATTAATGTTTTGGTT+TGG - chr5_4:14886305-14886324 Msa0839730:CDS 20.0%
!!! ATGAATTAATGTTTTGGTTT+GGG - chr5_4:14886306-14886325 Msa0839730:CDS 20.0%
!!! TATTAAATAATTTTAACCGG+GGG + chr5_4:14885651-14885670 None:intergenic 20.0%
!!! TGTTGTATGAATTAATGTTT+TGG - chr5_4:14886300-14886319 Msa0839730:CDS 20.0%
!!! TATGAATTAATGTTTTGGTT+TGG - chr5_4:14886305-14886324 Msa0839730:CDS 20.0%
!!! ATGAATTAATGTTTTGGTTT+GGG - chr5_4:14886306-14886325 Msa0839730:CDS 20.0%
!! TTTTATAGGCAAGAAAACAA+AGG + chr5_4:14885156-14885175 None:intergenic 25.0%
! CTATAAAAAGAAACTATCGA+GGG - chr5_4:14885168-14885187 Msa0839730:CDS 25.0%
!!! TAAAGCTACCACTTTTTATT+TGG + chr5_4:14885265-14885284 None:intergenic 25.0%
! AAATAAAAAGTGGTAGCTTT+AGG - chr5_4:14885264-14885283 Msa0839730:CDS 25.0%
!! ACACAAAAACTTCTTTTAGA+AGG - chr5_4:14885362-14885381 Msa0839730:intron 25.0%
!! TTAGGGACAATAATTTTATG+TGG - chr5_4:14886424-14886443 Msa0839730:CDS 25.0%
!! ACAATAATTTTATGTGGCAT+GGG - chr5_4:14886430-14886449 Msa0839730:CDS 25.0%
!! TTTTATAGGCAAGAAAACAA+AGG + chr5_4:14885156-14885175 None:intergenic 25.0%
! CTATAAAAAGAAACTATCGA+GGG - chr5_4:14885168-14885187 Msa0839730:CDS 25.0%
!!! TAAAGCTACCACTTTTTATT+TGG + chr5_4:14885265-14885284 None:intergenic 25.0%
! AAATAAAAAGTGGTAGCTTT+AGG - chr5_4:14885264-14885283 Msa0839730:CDS 25.0%
!! ACACAAAAACTTCTTTTAGA+AGG - chr5_4:14885362-14885381 Msa0839730:intron 25.0%
!! TTAGGGACAATAATTTTATG+TGG - chr5_4:14886424-14886443 Msa0839730:CDS 25.0%
!! ACAATAATTTTATGTGGCAT+GGG - chr5_4:14886430-14886449 Msa0839730:CDS 25.0%
! CCTCGATAGTTTCTTTTTAT+AGG + chr5_4:14885170-14885189 None:intergenic 30.0%
CCTATAAAAAGAAACTATCG+AGG - chr5_4:14885167-14885186 Msa0839730:CDS 30.0%
AGTGGAAACCAAATAAAAAG+TGG - chr5_4:14885254-14885273 Msa0839730:CDS 30.0%
TAGAAAGGATAGTTTCAGAT+TGG - chr5_4:14885298-14885317 Msa0839730:CDS 30.0%
AGAAAGGATAGTTTCAGATT+GGG - chr5_4:14885299-14885318 Msa0839730:CDS 30.0%
!! CAAAAACTTCTTTTAGAAGG+AGG - chr5_4:14885365-14885384 Msa0839730:intron 30.0%
!!! TTATTTTTTCTCTTAACCCC+CGG - chr5_4:14885632-14885651 Msa0839730:intron 30.0%
!! CTAATAAAGTATCGCAATTG+TGG - chr5_4:14886155-14886174 Msa0839730:CDS 30.0%
AACTTTAGTACCATTGTCAT+TGG + chr5_4:14886379-14886398 None:intergenic 30.0%
AATGACAATGGTACTAAAGT+TGG - chr5_4:14886378-14886397 Msa0839730:CDS 30.0%
! GACAATAATTTTATGTGGCA+TGG - chr5_4:14886429-14886448 Msa0839730:CDS 30.0%
! TTGTTCTGAACAACATTCTA+AGG + chr5_4:14886558-14886577 None:intergenic 30.0%
! CCTCGATAGTTTCTTTTTAT+AGG + chr5_4:14885170-14885189 None:intergenic 30.0%
CCTATAAAAAGAAACTATCG+AGG - chr5_4:14885167-14885186 Msa0839730:CDS 30.0%
AGTGGAAACCAAATAAAAAG+TGG - chr5_4:14885254-14885273 Msa0839730:CDS 30.0%
TAGAAAGGATAGTTTCAGAT+TGG - chr5_4:14885298-14885317 Msa0839730:CDS 30.0%
AGAAAGGATAGTTTCAGATT+GGG - chr5_4:14885299-14885318 Msa0839730:CDS 30.0%
!! CAAAAACTTCTTTTAGAAGG+AGG - chr5_4:14885365-14885384 Msa0839730:intron 30.0%
!!! TTATTTTTTCTCTTAACCCC+CGG - chr5_4:14885632-14885651 Msa0839730:intron 30.0%
!! CTAATAAAGTATCGCAATTG+TGG - chr5_4:14886155-14886174 Msa0839730:CDS 30.0%
AACTTTAGTACCATTGTCAT+TGG + chr5_4:14886379-14886398 None:intergenic 30.0%
AATGACAATGGTACTAAAGT+TGG - chr5_4:14886378-14886397 Msa0839730:CDS 30.0%
! GACAATAATTTTATGTGGCA+TGG - chr5_4:14886429-14886448 Msa0839730:CDS 30.0%
! TTGTTCTGAACAACATTCTA+AGG + chr5_4:14886558-14886577 None:intergenic 30.0%
GAAAATAGCTTGAGAGAGAA+GGG + chr5_4:14885086-14885105 None:intergenic 35.0%
AAAAGAAACTATCGAGGGTA+TGG - chr5_4:14885173-14885192 Msa0839730:CDS 35.0%
! TGGTTTTTCCATCAAAAGCA+AGG - chr5_4:14885193-14885212 Msa0839730:CDS 35.0%
!! TAATGCTTCCTTGCTTTTGA+TGG + chr5_4:14885204-14885223 None:intergenic 35.0%
ATTATAGAGCAACATGGACA+TGG - chr5_4:14885220-14885239 Msa0839730:CDS 35.0%
GACATGGAGAATAGTAATAG+TGG - chr5_4:14885236-14885255 Msa0839730:CDS 35.0%
!! AAAAAGTGGTAGCTTTAGGA+AGG - chr5_4:14885268-14885287 Msa0839730:CDS 35.0%
!! AAAAGTGGTAGCTTTAGGAA+GGG - chr5_4:14885269-14885288 Msa0839730:CDS 35.0%
!! AAACTTCTTTTAGAAGGAGG+TGG - chr5_4:14885368-14885387 Msa0839730:intron 35.0%
TCACAAACTCTCTTTCTGTT+AGG - chr5_4:14885420-14885439 Msa0839730:intron 35.0%
GGAACAAAGTCATTGATAGA+AGG + chr5_4:14885485-14885504 None:intergenic 35.0%
ATGGGAAAATATACACGTTC+AGG + chr5_4:14885572-14885591 None:intergenic 35.0%
!! AAAGTATCGCAATTGTGGAT+TGG - chr5_4:14886160-14886179 Msa0839730:CDS 35.0%
! ACTGATTCATCCAATGACAA+TGG - chr5_4:14886366-14886385 Msa0839730:CDS 35.0%
!! TGGTACTAAAGTTGGTGTTA+TGG - chr5_4:14886386-14886405 Msa0839730:CDS 35.0%
TGTTATGGTTTCTGTCTACA+TGG - chr5_4:14886401-14886420 Msa0839730:CDS 35.0%
GTGTATAAAAGGGAACTTTG+TGG + chr5_4:14886464-14886483 None:intergenic 35.0%
! CAGGGAAAGTGTGTATAAAA+GGG + chr5_4:14886474-14886493 None:intergenic 35.0%
! TCAGGGAAAGTGTGTATAAA+AGG + chr5_4:14886475-14886494 None:intergenic 35.0%
GTTTGTGTAGAGGTAAATCA+GGG + chr5_4:14886492-14886511 None:intergenic 35.0%
ACCAAGATTGCATAATCTGT+TGG + chr5_4:14886516-14886535 None:intergenic 35.0%
GAAAATAGCTTGAGAGAGAA+GGG + chr5_4:14885086-14885105 None:intergenic 35.0%
AAAAGAAACTATCGAGGGTA+TGG - chr5_4:14885173-14885192 Msa0839730:CDS 35.0%
! TGGTTTTTCCATCAAAAGCA+AGG - chr5_4:14885193-14885212 Msa0839730:CDS 35.0%
!! TAATGCTTCCTTGCTTTTGA+TGG + chr5_4:14885204-14885223 None:intergenic 35.0%
ATTATAGAGCAACATGGACA+TGG - chr5_4:14885220-14885239 Msa0839730:CDS 35.0%
GACATGGAGAATAGTAATAG+TGG - chr5_4:14885236-14885255 Msa0839730:CDS 35.0%
!! AAAAAGTGGTAGCTTTAGGA+AGG - chr5_4:14885268-14885287 Msa0839730:CDS 35.0%
!! AAAAGTGGTAGCTTTAGGAA+GGG - chr5_4:14885269-14885288 Msa0839730:CDS 35.0%
!! AAACTTCTTTTAGAAGGAGG+TGG - chr5_4:14885368-14885387 Msa0839730:intron 35.0%
TCACAAACTCTCTTTCTGTT+AGG - chr5_4:14885420-14885439 Msa0839730:intron 35.0%
GGAACAAAGTCATTGATAGA+AGG + chr5_4:14885485-14885504 None:intergenic 35.0%
ATGGGAAAATATACACGTTC+AGG + chr5_4:14885572-14885591 None:intergenic 35.0%
!! AAAGTATCGCAATTGTGGAT+TGG - chr5_4:14886160-14886179 Msa0839730:CDS 35.0%
! ACTGATTCATCCAATGACAA+TGG - chr5_4:14886366-14886385 Msa0839730:CDS 35.0%
!! TGGTACTAAAGTTGGTGTTA+TGG - chr5_4:14886386-14886405 Msa0839730:CDS 35.0%
TGTTATGGTTTCTGTCTACA+TGG - chr5_4:14886401-14886420 Msa0839730:CDS 35.0%
GTGTATAAAAGGGAACTTTG+TGG + chr5_4:14886464-14886483 None:intergenic 35.0%
! CAGGGAAAGTGTGTATAAAA+GGG + chr5_4:14886474-14886493 None:intergenic 35.0%
! TCAGGGAAAGTGTGTATAAA+AGG + chr5_4:14886475-14886494 None:intergenic 35.0%
GTTTGTGTAGAGGTAAATCA+GGG + chr5_4:14886492-14886511 None:intergenic 35.0%
ACCAAGATTGCATAATCTGT+TGG + chr5_4:14886516-14886535 None:intergenic 35.0%
GGAAAATAGCTTGAGAGAGA+AGG + chr5_4:14885087-14885106 None:intergenic 40.0%
!! GGAAGCATTATAGAGCAACA+TGG - chr5_4:14885214-14885233 Msa0839730:CDS 40.0%
!! TAGGAAGGGTAGCTTTAGAA+AGG - chr5_4:14885283-14885302 Msa0839730:CDS 40.0%
AAGGATAGTTTCAGATTGGG+AGG - chr5_4:14885302-14885321 Msa0839730:CDS 40.0%
GCAGCTAGCAAGGTATATAT+GGG + chr5_4:14885590-14885609 None:intergenic 40.0%
TGCAGCTAGCAAGGTATATA+TGG + chr5_4:14885591-14885610 None:intergenic 40.0%
TTTATGAGTTGCAGCTAGCA+AGG + chr5_4:14885600-14885619 None:intergenic 40.0%
TGGTTTCTGTCTACATGGTT+AGG - chr5_4:14886406-14886425 Msa0839730:CDS 40.0%
GGTTTCTGTCTACATGGTTA+GGG - chr5_4:14886407-14886426 Msa0839730:CDS 40.0%
CGTTTGTGTAGAGGTAAATC+AGG + chr5_4:14886493-14886512 None:intergenic 40.0%
GCCAACAGATTATGCAATCT+TGG - chr5_4:14886512-14886531 Msa0839730:five_prime_UTR 40.0%
GGAAAATAGCTTGAGAGAGA+AGG + chr5_4:14885087-14885106 None:intergenic 40.0%
!! GGAAGCATTATAGAGCAACA+TGG - chr5_4:14885214-14885233 Msa0839730:CDS 40.0%
!! TAGGAAGGGTAGCTTTAGAA+AGG - chr5_4:14885283-14885302 Msa0839730:CDS 40.0%
AAGGATAGTTTCAGATTGGG+AGG - chr5_4:14885302-14885321 Msa0839730:CDS 40.0%
GCAGCTAGCAAGGTATATAT+GGG + chr5_4:14885590-14885609 None:intergenic 40.0%
TGCAGCTAGCAAGGTATATA+TGG + chr5_4:14885591-14885610 None:intergenic 40.0%
TTTATGAGTTGCAGCTAGCA+AGG + chr5_4:14885600-14885619 None:intergenic 40.0%
TGGTTTCTGTCTACATGGTT+AGG - chr5_4:14886406-14886425 Msa0839730:CDS 40.0%
GGTTTCTGTCTACATGGTTA+GGG - chr5_4:14886407-14886426 Msa0839730:CDS 40.0%
CGTTTGTGTAGAGGTAAATC+AGG + chr5_4:14886493-14886512 None:intergenic 40.0%
GCCAACAGATTATGCAATCT+TGG - chr5_4:14886512-14886531 Msa0839730:five_prime_UTR 40.0%
!! CTTCTTTTAGAAGGAGGTGG+AGG - chr5_4:14885371-14885390 Msa0839730:intron 45.0%
AGTATCTGAGAGAGCAGTGA+GGG + chr5_4:14885456-14885475 None:intergenic 45.0%
TAGTATCTGAGAGAGCAGTG+AGG + chr5_4:14885457-14885476 None:intergenic 45.0%
AATACGGTAGAAGGTAGCAG+CGG + chr5_4:14885528-14885547 None:intergenic 45.0%
GGAAGCTGAAATACGGTAGA+AGG + chr5_4:14885537-14885556 None:intergenic 45.0%
CTACCGTATTTCAGCTTCCA+TGG - chr5_4:14885538-14885557 Msa0839730:intron 45.0%
CAGCCATGGAAGCTGAAATA+CGG + chr5_4:14885544-14885563 None:intergenic 45.0%
GTTGAAGTTCATGCAGTTGC+AGG + chr5_4:14886085-14886104 None:intergenic 45.0%
TGGGTTGTTTATGTGCAGCT+TGG - chr5_4:14886325-14886344 Msa0839730:CDS 45.0%
GGGTTGTTTATGTGCAGCTT+GGG - chr5_4:14886326-14886345 Msa0839730:CDS 45.0%
GGTTGTTTATGTGCAGCTTG+GGG - chr5_4:14886327-14886346 Msa0839730:CDS 45.0%
GTTGTTTATGTGCAGCTTGG+GGG - chr5_4:14886328-14886347 Msa0839730:CDS 45.0%
ATCTGTTGGCGTTTGTGTAG+AGG + chr5_4:14886502-14886521 None:intergenic 45.0%
!! CTTCTTTTAGAAGGAGGTGG+AGG - chr5_4:14885371-14885390 Msa0839730:intron 45.0%
AGTATCTGAGAGAGCAGTGA+GGG + chr5_4:14885456-14885475 None:intergenic 45.0%
TAGTATCTGAGAGAGCAGTG+AGG + chr5_4:14885457-14885476 None:intergenic 45.0%
AATACGGTAGAAGGTAGCAG+CGG + chr5_4:14885528-14885547 None:intergenic 45.0%
GGAAGCTGAAATACGGTAGA+AGG + chr5_4:14885537-14885556 None:intergenic 45.0%
CTACCGTATTTCAGCTTCCA+TGG - chr5_4:14885538-14885557 Msa0839730:intron 45.0%
CAGCCATGGAAGCTGAAATA+CGG + chr5_4:14885544-14885563 None:intergenic 45.0%
GTTGAAGTTCATGCAGTTGC+AGG + chr5_4:14886085-14886104 None:intergenic 45.0%
TGGGTTGTTTATGTGCAGCT+TGG - chr5_4:14886325-14886344 Msa0839730:CDS 45.0%
GGGTTGTTTATGTGCAGCTT+GGG - chr5_4:14886326-14886345 Msa0839730:CDS 45.0%
GGTTGTTTATGTGCAGCTTG+GGG - chr5_4:14886327-14886346 Msa0839730:CDS 45.0%
GTTGTTTATGTGCAGCTTGG+GGG - chr5_4:14886328-14886347 Msa0839730:CDS 45.0%
ATCTGTTGGCGTTTGTGTAG+AGG + chr5_4:14886502-14886521 None:intergenic 45.0%
!! ATAATTATATATTTATATCA+TGG + chr5_4:14885114-14885133 None:intergenic 5.0%
!!! ATATATTAAATAATTTTAAC+CGG + chr5_4:14885654-14885673 None:intergenic 5.0%
!! TATATATGTAATAAATATAT+AGG + chr5_4:14885677-14885696 None:intergenic 5.0%
!! TGATATAATAAAAAAAAAAT+AGG - chr5_4:14885908-14885927 Msa0839730:intron 5.0%
!! TTGATATAAAAAAAAAAAAT+AGG - chr5_4:14885942-14885961 Msa0839730:intron 5.0%
!!! ATATATCATTAATTTTAAAA+GGG + chr5_4:14886218-14886237 None:intergenic 5.0%
!!! TATATATCATTAATTTTAAA+AGG + chr5_4:14886219-14886238 None:intergenic 5.0%
!! ATAATTATATATTTATATCA+TGG + chr5_4:14885114-14885133 None:intergenic 5.0%
!!! ATATATTAAATAATTTTAAC+CGG + chr5_4:14885654-14885673 None:intergenic 5.0%
!! TATATATGTAATAAATATAT+AGG + chr5_4:14885677-14885696 None:intergenic 5.0%
!! TGATATAATAAAAAAAAAAT+AGG - chr5_4:14885908-14885927 Msa0839730:intron 5.0%
!! TTGATATAAAAAAAAAAAAT+AGG - chr5_4:14885942-14885961 Msa0839730:intron 5.0%
!!! ATATATCATTAATTTTAAAA+GGG + chr5_4:14886218-14886237 None:intergenic 5.0%
!!! TATATATCATTAATTTTAAA+AGG + chr5_4:14886219-14886238 None:intergenic 5.0%
GGGAGGAAAAGATCACACAG+TGG - chr5_4:14885319-14885338 Msa0839730:CDS 50.0%
GATCACACAGTGGTTGAGCT+AGG - chr5_4:14885329-14885348 Msa0839730:intron 50.0%
CGTATTTCAGCTTCCATGGC+TGG - chr5_4:14885542-14885561 Msa0839730:intron 50.0%
GGGAGGAAAAGATCACACAG+TGG - chr5_4:14885319-14885338 Msa0839730:CDS 50.0%
GATCACACAGTGGTTGAGCT+AGG - chr5_4:14885329-14885348 Msa0839730:intron 50.0%
CGTATTTCAGCTTCCATGGC+TGG - chr5_4:14885542-14885561 Msa0839730:intron 50.0%
ACGTTCAGGTGTTCCAGCCA+TGG + chr5_4:14885558-14885577 None:intergenic 55.0%
ACGTTCAGGTGTTCCAGCCA+TGG + chr5_4:14885558-14885577 None:intergenic 55.0%
GATTCGTCGTCGTCGGAGAC+AGG + chr5_4:14885506-14885525 None:intergenic 60.0%
! AGCAGCGGATTCGTCGTCGT+CGG + chr5_4:14885513-14885532 None:intergenic 60.0%
GATTCGTCGTCGTCGGAGAC+AGG + chr5_4:14885506-14885525 None:intergenic 60.0%
! AGCAGCGGATTCGTCGTCGT+CGG + chr5_4:14885513-14885532 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 14885077 14886612 14885077 ID=Msa0839730;Name=Msa0839730
chr5_4 mRNA 14885077 14886612 14885077 ID=Msa0839730-mRNA-1;Parent=Msa0839730;Name=Msa0839730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|1|1|1|1|1|2|0|205
chr5_4 exon 14885077 14885346 14885077 ID=Msa0839730-mRNA-1:exon:6474;Parent=Msa0839730-mRNA-1
chr5_4 exon 14886112 14886612 14886112 ID=Msa0839730-mRNA-1:exon:6473;Parent=Msa0839730-mRNA-1
chr5_4 five_prime_UTR 14886457 14886612 14886457 ID=Msa0839730-mRNA-1:five_prime_utr;Parent=Msa0839730-mRNA-1
chr5_4 CDS 14886112 14886456 14886112 ID=Msa0839730-mRNA-1:cds;Parent=Msa0839730-mRNA-1
chr5_4 CDS 14885077 14885346 14885077 ID=Msa0839730-mRNA-1:cds;Parent=Msa0839730-mRNA-1
Gene Sequence

>Msa0839730

ATGGACATGGAGAATAGTAATAGTGGAAACCAAATAAAAAGTGGTAGCTTTAGGAAGGGTAGCTTTAGAAAGGATAGTTTCAGATTGGGAGGAAAAGATCACACAGTGGTTGAGCTAGGTAGTATTGACACACAAAAACTTCTTTTAGAAGGAGGTGGAGGAGAAATAAGAGAGAAACAAAAAACTCTCACAAACTCTCTTTCTGTTAGGCAGATGAAAACCCTCACTGCTCTCTCAGATACTATCTTGCCTTCTATCAATGACTTTGTTCCTGTCTCCGACGACGACGAATCCGCTGCTACCTTCTACCGTATTTCAGCTTCCATGGCTGGAACACCTGAACGTCTTGGGGGTATAATAAGTGAGAGACTGATTCATCCAATGACAATGGTACTAAAGTTGGTGTTATGGTTTCTGTCTACATGGTTAGGGACAATAATTTTATGTGGCATGGGTTGCTTATCCACAAAGTTCCCTTTTATACACACTTTCCCTGATTTACCTCTACACAAACGCCAACAGATTATGCAATCTTGGTCTCTAAGTTTCTTTCGTCACCTTAGAATGTTGTTCAGAACAATCAAACTTCTCACTCTCCTAATCTTCTTCACTCAG

Protein sequence

>Msa0839730

MDMENSNSGNQIKSGSFRKGSFRKDSFRLGGKDHTVVELGSIDTQKLLLEGGGGEIREKQKTLTNSLSVRQMKTLTALSDTILPSINDFVPVSDDDESAATFYRISASMAGTPERLGGIISERLIHPMTMVLKLVLWFLSTWLGTIILCGMGCLSTKFPFIHTFPDLPLHKRQQIMQSWSLSFFRHLRMLFRTIKLLTLLIFFTQ