AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1242430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242430 MtrunA17_Chr8g0356081 94.251 487 17 1 59 534 208 694 0.0 946
Msa1242430 MtrunA17_Chr2g0286031 48.398 593 177 10 59 534 103 683 6.17e-169 494
Msa1242430 MtrunA17_Chr4g0063141 56.187 299 110 3 46 331 207 497 6.88e-104 332
Msa1242430 MtrunA17_Chr2g0277651 47.902 286 138 1 59 333 235 520 6.07e-86 283
Msa1242430 MtrunA17_Chr1g0148981 43.804 347 117 5 45 322 213 550 7.07e-82 275
Msa1242430 MtrunA17_Chr3g0138671 44.199 362 174 8 69 415 225 573 3.09e-81 265
Msa1242430 MtrunA17_Chr3g0138131 50.667 225 89 6 44 250 213 433 2.19e-62 212
Msa1242430 MtrunA17_Chr5g0434371 32.082 293 178 5 69 344 259 547 2.17e-42 162
Msa1242430 MtrunA17_Chr4g0063071 33.333 222 135 3 113 321 5 226 7.78e-31 120
Msa1242430 MtrunA17_Chr4g0009161 49.315 73 36 1 259 331 12 83 1.04e-11 64.7
Msa1242430 MtrunA17_Chr3g0138141 50.769 65 32 0 262 326 11 75 3.07e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242430 AT5G46240.1 50.939 479 200 6 59 525 219 674 2.01e-157 464
Msa1242430 AT4G18290.1 50.493 507 205 13 46 530 214 696 1.25e-143 430
Msa1242430 AT4G18290.2 50.493 507 205 13 46 530 225 707 1.48e-143 430
Msa1242430 AT2G26650.2 54.667 300 115 3 45 331 101 392 2.20e-104 330
Msa1242430 AT2G26650.1 54.667 300 115 3 45 331 206 497 3.80e-103 329
Msa1242430 AT2G25600.1 53.000 300 120 3 45 331 232 523 9.45e-97 313
Msa1242430 AT4G32500.1 51.000 300 126 3 45 331 230 521 3.35e-94 306
Msa1242430 AT4G32650.1 37.844 473 211 8 69 526 258 662 2.40e-90 291
Msa1242430 AT4G32650.3 37.844 473 210 9 69 526 258 661 4.33e-89 287
Msa1242430 AT4G32650.2 48.727 275 129 2 69 331 258 532 8.69e-83 269
Msa1242430 AT4G22200.2 44.884 303 155 2 44 335 222 523 4.34e-82 267
Msa1242430 AT4G22200.1 44.884 303 155 2 44 335 222 523 1.03e-80 268
Msa1242430 AT3G02850.3 36.201 279 157 5 69 330 251 525 3.03e-48 176
Msa1242430 AT3G02850.2 36.201 279 157 5 69 330 251 525 7.41e-48 177
Msa1242430 AT3G02850.1 36.201 279 157 5 69 330 251 525 9.28e-48 178
Msa1242430 AT5G37500.4 34.317 271 160 4 69 322 234 503 1.58e-43 165
Msa1242430 AT5G37500.1 34.317 271 160 4 69 322 234 503 2.28e-43 165
Msa1242430 AT5G37500.3 34.317 271 160 4 69 322 180 449 2.45e-43 165
Msa1242430 AT5G37500.2 34.317 271 160 4 69 322 234 503 2.85e-43 165

Find 106 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTGACATGCTTCGTTTA+TGG 0.146203 8_2:-26728058 Msa1242430:CDS
TGAACATATAATAGACTTTA+TGG 0.172466 8_2:-26722943 Msa1242430:CDS
CAAAATTATTGCATAGTAAA+AGG 0.184100 8_2:+26722193 None:intergenic
TACTTGCTCCTAAAGAAATT+TGG 0.186425 8_2:+26722889 None:intergenic
AAAAGATTTGACATTATAAT+TGG 0.201416 8_2:+26723820 None:intergenic
GGTCAAGAAGATTTAGGTTT+TGG 0.233837 8_2:-26723212 Msa1242430:CDS
GAAAATCTTGTGAAACTCTT+TGG 0.257211 8_2:+26724594 None:intergenic
ATGCTTGCGCGAATCGCTTT+TGG 0.265653 8_2:+26724662 None:intergenic
TAAAATTTGTGAAAGCTCTT+TGG 0.273667 8_2:+26723897 None:intergenic
ATTACATAAAATCTCATTAA+TGG 0.275482 8_2:-26722231 Msa1242430:three_prime_UTR
ATTATAATTGGTGCTGCTTC+TGG 0.277918 8_2:+26723832 None:intergenic
TTAAGTGGTCAAGAAGATTT+AGG 0.282480 8_2:-26723218 Msa1242430:CDS
ACCGATCATAGCAGCGAGTT+TGG 0.288257 8_2:-26728089 Msa1242430:CDS
AGGAGTGACCAAATTTCTTT+AGG 0.296498 8_2:-26722897 Msa1242430:CDS
GAAGATACATTTGGAGAGAT+TGG 0.307981 8_2:-26723958 Msa1242430:CDS
TGTAGCATAACATCTACTTT+AGG 0.324139 8_2:+26724429 None:intergenic
ATTGTTTCTTTCAATTCCTT+TGG 0.325775 8_2:+26722120 None:intergenic
TCTTTCTGTTTCCATCTAAC+AGG 0.326795 8_2:+26723017 None:intergenic
CAAAACAAGAGTCATGAAAA+TGG 0.327013 8_2:-26722978 Msa1242430:CDS
AGACTCATTTCCTTAAAATC+AGG 0.330725 8_2:+26727461 None:intergenic
TCTGAATTTAGTATTATTGT+AGG 0.333982 8_2:+26722385 None:intergenic
GCTGCTATGATCGGTGAATA+TGG 0.336774 8_2:+26728097 None:intergenic
ACATTAACTACTACTGGATA+TGG 0.350187 8_2:-26727398 Msa1242430:CDS
AAACAGCAAGAAACAATAAA+TGG 0.354181 8_2:-26724689 Msa1242430:CDS
TTTAGTATTATTGTAGGCCT+TGG 0.358325 8_2:+26722391 None:intergenic
ATCATAAGAAAATTGCAAAA+AGG 0.364458 8_2:-26728312 Msa1242430:intron
TGCTTCTGGATTTGCTTGTA+AGG 0.365673 8_2:+26723846 None:intergenic
GGATTAACAGCTTACATCAT+TGG 0.376242 8_2:-26727311 Msa1242430:CDS
TGGGTTGATGATTTCCAAAC+TGG 0.382275 8_2:-26728744 Msa1242430:five_prime_UTR
TATAATTTCTTGCAGGGCTT+GGG 0.383623 8_2:-26728521 Msa1242430:intron
ATCAAACTTGTTGCTAGCTC+TGG 0.385508 8_2:-26722081 Msa1242430:three_prime_UTR
ATAGGTACCATGATTCAAAA+AGG 0.392543 8_2:-26727505 Msa1242430:CDS
TGGATACATGTTGTTCAACT+TGG 0.398387 8_2:-26727333 Msa1242430:CDS
AGAAGCTAAGTCCTGTTAGA+TGG 0.400842 8_2:-26723028 Msa1242430:CDS
AGCAGCAACCTTTCACTGTT+AGG 0.400999 8_2:-26723921 Msa1242430:CDS
ATTGTGACATTAACTACTAC+TGG 0.403325 8_2:-26727404 Msa1242430:CDS
GAAACTGCAGGAGAAAAGTT+TGG 0.409163 8_2:-26722418 Msa1242430:intron
AGGTAGGATTTCTGCACAAC+AGG 0.414712 8_2:+26724620 None:intergenic
ATCGGTGAATATGGAGCTAA+TGG 0.417380 8_2:+26728106 None:intergenic
ATCATAGATAACATTGTGAA+TGG 0.421566 8_2:-26728409 Msa1242430:five_prime_UTR
GATCTCATTCGCAGTGTTGA+TGG 0.426673 8_2:-26724273 Msa1242430:CDS
ACTGGTATCTTGCCATCTCT+TGG 0.429334 8_2:-26728726 Msa1242430:five_prime_UTR
AGCAGCTCATCCAATGAATC+AGG 0.431556 8_2:+26722753 None:intergenic
TTCTTAGTTTAGTTTCTTGG+TGG 0.442673 8_2:+26728694 None:intergenic
CAGATAACCTTAGCCATGTT+AGG 0.447586 8_2:-26722917 Msa1242430:CDS
GCAAGTGCAGAAGATACATT+TGG 0.454936 8_2:-26723967 Msa1242430:CDS
TTCTAGTGCTTTACTCTGCA+TGG 0.457513 8_2:-26728483 Msa1242430:five_prime_UTR
GGTAGAAAAGCAAATTGAAA+GGG 0.462208 8_2:+26728454 None:intergenic
CAGGAGATGTTGTTTGACAT+TGG 0.469193 8_2:-26727353 Msa1242430:CDS
CCTGTGTTTCATGAGGTAGA+TGG 0.469984 8_2:+26724759 None:intergenic
GATCTATACATGTTGGTCTC+AGG 0.472398 8_2:-26724390 Msa1242430:CDS
TGAATATGGAGCTAATGGTT+TGG 0.480117 8_2:+26728111 None:intergenic
ACCAACATGTATAGATCTGT+TGG 0.488657 8_2:+26724396 None:intergenic
GATGAGCTGCTCAAGATTGT+TGG 0.491676 8_2:-26722741 Msa1242430:intron
TCTTATGATCATCAATAAGA+AGG 0.495380 8_2:+26728326 None:intergenic
CTTGCAGGGCTTGGGACAAG+TGG 0.496211 8_2:-26728513 Msa1242430:intron
GAGATGGCAAGATACCAGTT+TGG 0.505157 8_2:+26728730 None:intergenic
GATATGTGATAGCAATGTAT+TGG 0.506357 8_2:-26727430 Msa1242430:CDS
TACCAGTAATTTCGATCGAA+GGG 0.507573 8_2:+26728657 None:intergenic
CTTGTGAAACTCTTTGGAAG+AGG 0.512428 8_2:+26724600 None:intergenic
GGATACATGTTGTTCAACTT+GGG 0.513252 8_2:-26727332 Msa1242430:CDS
TCCAAACTCGCTGCTATGAT+CGG 0.522570 8_2:+26728088 None:intergenic
GTCTTGTCCTACATAGTGAA+TGG 0.526427 8_2:+26722818 None:intergenic
AATCTATTGACATATGAGAA+TGG 0.530668 8_2:+26728780 None:intergenic
CAAAGATAAACCAGGTACAT+AGG 0.535059 8_2:+26728156 None:intergenic
AATTCAGGTACCTATGTACC+TGG 0.535707 8_2:-26728166 Msa1242430:intron
GACTCATTTCCTTAAAATCA+GGG 0.537535 8_2:+26727462 None:intergenic
CATCAATAAGAAGGTAGGAA+TGG 0.538204 8_2:+26728335 None:intergenic
ACCAAGTTACAAGGAAAACA+TGG 0.541288 8_2:-26722792 Msa1242430:CDS
GGTCACTCCTAACATGGCTA+AGG 0.542535 8_2:+26722910 None:intergenic
TCATGAAGAGACAATCTAGT+AGG 0.544174 8_2:+26723182 None:intergenic
TGAAACTCTTTGGAAGAGGT+AGG 0.544474 8_2:+26724604 None:intergenic
CAAGACAGAACCAAGTTACA+AGG 0.545091 8_2:-26722801 Msa1242430:CDS
AGAGTTACCATTCACTATGT+AGG 0.549174 8_2:-26722825 Msa1242430:CDS
AGCATAACATCTACTTTAGG+TGG 0.555493 8_2:+26724432 None:intergenic
ATGATCATCAATAAGAAGGT+AGG 0.555706 8_2:+26728330 None:intergenic
TTACCAGTAATTTCGATCGA+AGG 0.556205 8_2:+26728656 None:intergenic
TCTTTGGTCCTAACAGTGAA+AGG 0.556992 8_2:+26723913 None:intergenic
AGGTAGAAAAGCAAATTGAA+AGG 0.557235 8_2:+26728453 None:intergenic
CATAATGAATGCACAACCAA+AGG 0.564845 8_2:-26722136 Msa1242430:three_prime_UTR
TGGACTCTTGCTCCAAGAGA+TGG 0.566319 8_2:+26728714 None:intergenic
TGTCTCAAGTTCAAAACAGA+AGG 0.569720 8_2:-26724716 Msa1242430:CDS
CAAGTAACCATCAAATCGAA+AGG 0.584455 8_2:-26722872 Msa1242430:CDS
GACCTTTGTGTCATTCGAGA+CGG 0.589584 8_2:-26722346 Msa1242430:CDS
GAGTCAGTTCTCTCTTTGCA+AGG 0.598149 8_2:-26728025 Msa1242430:intron
GAGAAAAGTTTGGAGGGCCA+AGG 0.600290 8_2:-26722408 Msa1242430:CDS
CCATCTACCTCATGAAACAC+AGG 0.600547 8_2:-26724759 Msa1242430:CDS
TGAAGAGACAATCTAGTAGG+TGG 0.607924 8_2:+26723185 None:intergenic
AAATTTGGTCACTCCTAACA+TGG 0.608000 8_2:+26722904 None:intergenic
CTGCAGGAGAAAAGTTTGGA+GGG 0.609739 8_2:-26722414 Msa1242430:intron
TTGTCTCTTCATGACATACA+TGG 0.609853 8_2:-26723173 Msa1242430:CDS
CATGTTGGTCTCAGGATCAG+TGG 0.614447 8_2:-26724382 Msa1242430:intron
ATTTGATCCTGTGTTTCATG+AGG 0.616330 8_2:+26724752 None:intergenic
CCAGTAATTTCGATCGAAGG+GGG 0.626921 8_2:+26728659 None:intergenic
TCCAACAGATCTATACATGT+TGG 0.630698 8_2:-26724397 Msa1242430:CDS
ACTGCAGGAGAAAAGTTTGG+AGG 0.631832 8_2:-26722415 Msa1242430:intron
TTTGCATGCTAATAACACTC+AGG 0.636938 8_2:-26727372 Msa1242430:CDS
ACCAGTAATTTCGATCGAAG+GGG 0.648047 8_2:+26728658 None:intergenic
GTAGAAAAGCAAATTGAAAG+GGG 0.648176 8_2:+26728455 None:intergenic
CACCGTCTCGAATGACACAA+AGG 0.661055 8_2:+26722344 None:intergenic
ATACTCGGTTCACGTGTGAG+TGG 0.661841 8_2:-26721995 Msa1242430:three_prime_UTR
CCAAGTTACAAGGAAAACAT+GGG 0.667847 8_2:-26722791 Msa1242430:CDS
ATGGAGCTAATGGTTTGGAG+AGG 0.685481 8_2:+26728116 None:intergenic
TCTCTTCATGACATACATGG+TGG 0.688736 8_2:-26723170 Msa1242430:CDS
ACAAACATCAAAGATAAACC+AGG 0.718745 8_2:+26728148 None:intergenic
TACATGGTGGAAACAACACA+AGG 0.729516 8_2:-26723157 Msa1242430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG + chr8_2:26725016-26725035 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr8_2:26725017-26725036 None:intergenic 0.0%
!!! TTTTTATTTTATTTTATTTT+TGG + chr8_2:26725329-26725348 None:intergenic 0.0%
!! ATTATTTATATTTATGAGTT+TGG - chr8_2:26723807-26723826 Msa1242430:intron 10.0%
!! TTATTTATATTTATGAGTTT+GGG - chr8_2:26723808-26723827 Msa1242430:intron 10.0%
!!! AAGTAAAATAAAAAATTTTG+AGG + chr8_2:26724018-26724037 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr8_2:26724217-26724236 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr8_2:26724218-26724237 None:intergenic 10.0%
!!! TTAATAGTATATTTTGAAAT+TGG - chr8_2:26724650-26724669 Msa1242430:CDS 10.0%
!!! ACTTTTTTTTTTTTTTTTGA+AGG + chr8_2:26725269-26725288 None:intergenic 10.0%
!! ATAATCTTTAAATTCATAAA+AGG + chr8_2:26726580-26726599 None:intergenic 10.0%
!! TATATAATATAATTTCTTGC+AGG - chr8_2:26722257-26722276 Msa1242430:three_prime_UTR 15.0%
!! ATATAATATAATTTCTTGCA+GGG - chr8_2:26722258-26722277 Msa1242430:three_prime_UTR 15.0%
!! AAATAAATAACATAGTAAAG+TGG + chr8_2:26722510-26722529 None:intergenic 15.0%
!!! TTCATTTTATTAATTCTACA+AGG + chr8_2:26722536-26722555 None:intergenic 15.0%
!! ATATAAAACCAAAATTAGAA+AGG + chr8_2:26723112-26723131 None:intergenic 15.0%
!! TTATATATGTTTCTTTCTAA+CGG - chr8_2:26723126-26723145 Msa1242430:CDS 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr8_2:26724173-26724192 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr8_2:26724174-26724193 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr8_2:26724216-26724235 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr8_2:26724253-26724272 Msa1242430:intron 15.0%
!!! ATTTTTTTTAACCTCAAATA+TGG - chr8_2:26724598-26724617 Msa1242430:CDS 15.0%
!!! TTTTAAATATACCATATTTG+AGG + chr8_2:26724612-26724631 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTGAAGG+AGG + chr8_2:26725266-26725285 None:intergenic 15.0%
!! ATTGAGTTCTTAAATATATA+CGG + chr8_2:26725877-26725896 None:intergenic 15.0%
!! TTCATTTCTTTCATTATTAT+TGG - chr8_2:26726241-26726260 Msa1242430:intron 15.0%
!! AAAAGATTTGACATTATAAT+TGG + chr8_2:26726968-26726987 None:intergenic 15.0%
!!! TATAATGTCAAATCTTTTTA+TGG - chr8_2:26726970-26726989 Msa1242430:intron 15.0%
!!! TTAAATTTTACATGATTAGT+TGG + chr8_2:26728292-26728311 None:intergenic 15.0%
!! ATTACATAAAATCTCATTAA+TGG - chr8_2:26728554-26728573 Msa1242430:intron 15.0%
!!! TTTATTCCAATTTTTCATTT+AGG + chr8_2:26728770-26728789 None:intergenic 15.0%
!! AAAAATTGGAATAAAATACT+CGG - chr8_2:26728775-26728794 Msa1242430:five_prime_UTR 15.0%
!!! ATAGATTTTTCAAGATGTTT+TGG - chr8_2:26722021-26722040 Msa1242430:three_prime_UTR 20.0%
!!! TAGATTTTTCAAGATGTTTT+GGG - chr8_2:26722022-26722041 Msa1242430:three_prime_UTR 20.0%
!!! ATTTTCTTAGTTTAGTTTCT+TGG + chr8_2:26722097-26722116 None:intergenic 20.0%
!! ATCATAAGAAAATTGCAAAA+AGG - chr8_2:26722473-26722492 Msa1242430:intron 20.0%
!!! GACAAGAATTATTTTTTTCT+TGG - chr8_2:26722580-26722599 Msa1242430:intron 20.0%
!!! TCCATAAAAACTTTTAATTC+AGG - chr8_2:26722604-26722623 Msa1242430:intron 20.0%
!!! ACCTGAATTAAAAGTTTTTA+TGG + chr8_2:26722608-26722627 None:intergenic 20.0%
!!! CAGTTTTAAATAAAGTTATG+CGG + chr8_2:26722964-26722983 None:intergenic 20.0%
!!! TACATAATCCTTTCTAATTT+TGG - chr8_2:26723101-26723120 Msa1242430:CDS 20.0%
!!! TAATAATTGATTCTTCGAAT+AGG + chr8_2:26723159-26723178 None:intergenic 20.0%
!! GAAACATTTCAATTTCTAAT+TGG + chr8_2:26723186-26723205 None:intergenic 20.0%
!! ATAAGATAACTTTACATAGT+TGG - chr8_2:26723714-26723733 Msa1242430:intron 20.0%
!! TAATCATATTCATCAAGTTT+GGG + chr8_2:26723842-26723861 None:intergenic 20.0%
!! ATTACAGATATTAATACTCT+AGG - chr8_2:26723858-26723877 Msa1242430:CDS 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr8_2:26724140-26724159 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr8_2:26724141-26724160 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr8_2:26724252-26724271 Msa1242430:intron 20.0%
!!! ATTACTTTAAAGGTTTCAAT+CGG + chr8_2:26725644-26725663 None:intergenic 20.0%
!!! TTGCTTAAATTTTAAGTCAT+CGG + chr8_2:26725806-26725825 None:intergenic 20.0%
!!! TTAAGCAATTGTTGTTTATT+TGG - chr8_2:26725818-26725837 Msa1242430:intron 20.0%
!! ATATTGGTAAGATCTTTAAT+GGG + chr8_2:26725906-26725925 None:intergenic 20.0%
!! AATATTGGTAAGATCTTTAA+TGG + chr8_2:26725907-26725926 None:intergenic 20.0%
!! ATTAAGTAGGATTGTAATAT+TGG + chr8_2:26725922-26725941 None:intergenic 20.0%
!!! GAATAAACTATTGATTTTTG+TGG - chr8_2:26725957-26725976 Msa1242430:intron 20.0%
!! ATTTAAAGATTATGCATCAA+TGG - chr8_2:26726587-26726606 Msa1242430:intron 20.0%
!! ATATGATTGAATACATTTGT+CGG + chr8_2:26726624-26726643 None:intergenic 20.0%
!! AAAAGTGAAGGATTATATTT+CGG + chr8_2:26727128-26727147 None:intergenic 20.0%
!! TATATTTCCGAATGTAAAAA+TGG - chr8_2:26727401-26727420 Msa1242430:CDS 20.0%
!!! TTTCTCTAATTCAAGTTTTT+TGG + chr8_2:26727432-26727451 None:intergenic 20.0%
!! AAACTTGAATTAGAGAAAAT+AGG - chr8_2:26727434-26727453 Msa1242430:CDS 20.0%
!! AATTGACAAAAAATTCACAT+GGG - chr8_2:26727667-26727686 Msa1242430:intron 20.0%
!! TGAACATATAATAGACTTTA+TGG - chr8_2:26727842-26727861 Msa1242430:intron 20.0%
!! TCTGAATTTAGTATTATTGT+AGG + chr8_2:26728403-26728422 None:intergenic 20.0%
!! CAAAATTATTGCATAGTAAA+AGG + chr8_2:26728595-26728614 None:intergenic 20.0%
! AATCTATTGACATATGAGAA+TGG + chr8_2:26722008-26722027 None:intergenic 25.0%
! ATCATAGATAACATTGTGAA+TGG - chr8_2:26722376-26722395 Msa1242430:CDS 25.0%
! TCTTATGATCATCAATAAGA+AGG + chr8_2:26722462-26722481 None:intergenic 25.0%
!! TTGTGATTTAAAACAATGCT+TGG + chr8_2:26722826-26722845 None:intergenic 25.0%
! TCTTAATATTGCAAAAATCG+CGG - chr8_2:26722858-26722877 Msa1242430:CDS 25.0%
!! GACTTTTGATCAAATTTTTC+AGG - chr8_2:26723206-26723225 Msa1242430:CDS 25.0%
! TTAACTATTTACTTGCAGAT+AGG - chr8_2:26723262-26723281 Msa1242430:intron 25.0%
!!! ATTTTAAGGAAATGAGTCTT+TGG - chr8_2:26723328-26723347 Msa1242430:intron 25.0%
!!! TTTTAAGGAAATGAGTCTTT+GGG - chr8_2:26723329-26723348 Msa1242430:intron 25.0%
! GAGAAAACATACAAAATTTC+TGG + chr8_2:26723538-26723557 None:intergenic 25.0%
!! TCAATGAACTAAAAAGCATA+AGG + chr8_2:26723563-26723582 None:intergenic 25.0%
! ATATGTCCAAATATGTTAGA+GGG + chr8_2:26723631-26723650 None:intergenic 25.0%
! TATATGTCCAAATATGTTAG+AGG + chr8_2:26723632-26723651 None:intergenic 25.0%
! AGACATTGAATCATATTTCA+CGG + chr8_2:26723692-26723711 None:intergenic 25.0%
! ACTTTACATAGTTGGAATTA+AGG - chr8_2:26723722-26723741 Msa1242430:intron 25.0%
! GTAATCATATTCATCAAGTT+TGG + chr8_2:26723843-26723862 None:intergenic 25.0%
!! ATTTTATATATGTTGGTCGT+GGG + chr8_2:26723895-26723914 None:intergenic 25.0%
!! TATTTTATATATGTTGGTCG+TGG + chr8_2:26723896-26723915 None:intergenic 25.0%
!! AGCAAGTGTTGTAAATTTAT+TGG - chr8_2:26724308-26724327 Msa1242430:intron 25.0%
!! AATGTTACTTAATGCTAAGT+AGG + chr8_2:26724461-26724480 None:intergenic 25.0%
!! CATTTTCCTTAGAATAAATC+CGG - chr8_2:26724477-26724496 Msa1242430:intron 25.0%
! ACAGTTGACAAAATATATAC+AGG - chr8_2:26724701-26724720 Msa1242430:CDS 25.0%
! CAGTTGACAAAATATATACA+GGG - chr8_2:26724702-26724721 Msa1242430:CDS 25.0%
! AGTTGACAAAATATATACAG+GGG - chr8_2:26724703-26724722 Msa1242430:CDS 25.0%
! GCAAGTAAATAACTAAAAAG+TGG + chr8_2:26724800-26724819 None:intergenic 25.0%
! GCAAGTAAATAACTAAAAAG+TGG + chr8_2:26724800-26724819 None:intergenic 25.0%
!!! GTCCAAATTTATTTTCCTAT+TGG - chr8_2:26725428-26725447 Msa1242430:intron 25.0%
! CACCAATAGGAAAATAAATT+TGG + chr8_2:26725433-26725452 None:intergenic 25.0%
! GTCGTTATGAACTTATAATA+TGG + chr8_2:26725464-26725483 None:intergenic 25.0%
! TATTATAAGTTCATAACGAC+TGG - chr8_2:26725464-26725483 Msa1242430:intron 25.0%
! ATTCGTCACAATTACTTTAA+AGG + chr8_2:26725654-26725673 None:intergenic 25.0%
! AAATCGTGATACATCTTTAT+GGG - chr8_2:26725685-26725704 Msa1242430:intron 25.0%
! GAGTTCTCTAAATGATAAAA+AGG + chr8_2:26725740-26725759 None:intergenic 25.0%
! TAGAGTGAAGAAAATTAAGT+AGG + chr8_2:26725935-26725954 None:intergenic 25.0%
! AAACAGCAAGAAACAATAAA+TGG - chr8_2:26726096-26726115 Msa1242430:intron 25.0%
!! ACAAGATTTTCTATTTCAAC+TGG - chr8_2:26726203-26726222 Msa1242430:intron 25.0%
! CCTTGTAATAGATAACAATA+AGG + chr8_2:26726278-26726297 None:intergenic 25.0%
! CCTTATTGTTATCTATTACA+AGG - chr8_2:26726275-26726294 Msa1242430:intron 25.0%
! GTAAGTAACTTTGTAACAAT+AGG - chr8_2:26726304-26726323 Msa1242430:intron 25.0%
! AACCTGAATTATTCATGTTA+GGG + chr8_2:26726789-26726808 None:intergenic 25.0%
! AAACCTGAATTATTCATGTT+AGG + chr8_2:26726790-26726809 None:intergenic 25.0%
!!! AATAATTCAGGTTTTGATGA+AGG - chr8_2:26726796-26726815 Msa1242430:intron 25.0%
! TAAAATTTGTGAAAGCTCTT+TGG + chr8_2:26726891-26726910 None:intergenic 25.0%
!! AAGAGCTTTCACAAATTTTA+AGG - chr8_2:26726891-26726910 Msa1242430:intron 25.0%
!! TCTGAAATGTTAAAAAGTGA+AGG + chr8_2:26727140-26727159 None:intergenic 25.0%
! AAGATAAGCTATAAATTTGG+TGG + chr8_2:26727174-26727193 None:intergenic 25.0%
! GGAAAGATAAGCTATAAATT+TGG + chr8_2:26727177-26727196 None:intergenic 25.0%
! AATATTCAACATTACACATC+AGG + chr8_2:26727198-26727217 None:intergenic 25.0%
! TGTAATGTTGAATATTGAGT+TGG - chr8_2:26727202-26727221 Msa1242430:intron 25.0%
! TATAGTCTCTTGTAGAAAAA+AGG - chr8_2:26727500-26727519 Msa1242430:CDS 25.0%
! ATAGTCTCTTGTAGAAAAAA+GGG - chr8_2:26727501-26727520 Msa1242430:CDS 25.0%
!!! TTTGTTGTTTATTTTGACAG+AGG - chr8_2:26727544-26727563 Msa1242430:intron 25.0%
! GAATTGACAAAAAATTCACA+TGG - chr8_2:26727666-26727685 Msa1242430:intron 25.0%
! ATTGACAAAAAATTCACATG+GGG - chr8_2:26727668-26727687 Msa1242430:intron 25.0%
!! TTTTCATTTGCTTCTTTTTC+TGG + chr8_2:26727738-26727757 None:intergenic 25.0%
! ACTCTCTTATCAACAAAAAT+CGG + chr8_2:26727945-26727964 None:intergenic 25.0%
!! GATAATTTTACCTGATTCAT+TGG - chr8_2:26728022-26728041 Msa1242430:intron 25.0%
! TATTTGACAGAATGTTTAAG+TGG + chr8_2:26728077-26728096 None:intergenic 25.0%
!! TACTCTTTTGTAAATAATGC+CGG - chr8_2:26728095-26728114 Msa1242430:CDS 25.0%
!! ATTGTTTCTTTCAATTCCTT+TGG + chr8_2:26728668-26728687 None:intergenic 25.0%
! TGCTAACCTAAATGAAAAAT+TGG - chr8_2:26728761-26728780 Msa1242430:five_prime_UTR 25.0%
! TTCTTAGTTTAGTTTCTTGG+TGG + chr8_2:26722094-26722113 None:intergenic 30.0%
TATTTGAACTTTGTCTCTTG+AGG - chr8_2:26722177-26722196 Msa1242430:three_prime_UTR 30.0%
GTAGAAAAGCAAATTGAAAG+GGG + chr8_2:26722333-26722352 None:intergenic 30.0%
GGTAGAAAAGCAAATTGAAA+GGG + chr8_2:26722334-26722353 None:intergenic 30.0%
AGGTAGAAAAGCAAATTGAA+AGG + chr8_2:26722335-26722354 None:intergenic 30.0%
! AATAGTGTGTCATGTTTTTC+AGG + chr8_2:26722355-26722374 None:intergenic 30.0%
ATGATCATCAATAAGAAGGT+AGG + chr8_2:26722458-26722477 None:intergenic 30.0%
ACAAACATCAAAGATAAACC+AGG + chr8_2:26722640-26722659 None:intergenic 30.0%
TATATGTTTCTTTCTAACGG+AGG - chr8_2:26723129-26723148 Msa1242430:CDS 30.0%
ATAGGTACCATGATTCAAAA+AGG - chr8_2:26723280-26723299 Msa1242430:intron 30.0%
GACTCATTTCCTTAAAATCA+GGG + chr8_2:26723326-26723345 None:intergenic 30.0%
AGACTCATTTCCTTAAAATC+AGG + chr8_2:26723327-26723346 None:intergenic 30.0%
GATATGTGATAGCAATGTAT+TGG - chr8_2:26723355-26723374 Msa1242430:intron 30.0%
ATTGTGACATTAACTACTAC+TGG - chr8_2:26723381-26723400 Msa1242430:intron 30.0%
ACATTAACTACTACTGGATA+TGG - chr8_2:26723387-26723406 Msa1242430:intron 30.0%
!! TGACAAATCTTGTTGTTCAA+TGG - chr8_2:26723502-26723521 Msa1242430:intron 30.0%
TTTAGTCCCTCTAACATATT+TGG - chr8_2:26723622-26723641 Msa1242430:intron 30.0%
TTGGAATTAAGGATGACAAT+TGG - chr8_2:26723733-26723752 Msa1242430:intron 30.0%
CTACAAATGTTCAACATACT+TGG + chr8_2:26723761-26723780 None:intergenic 30.0%
TTGTAGAAATACCCACAATA+TGG - chr8_2:26723775-26723794 Msa1242430:intron 30.0%
AAATACCCACAATATGGATA+GGG - chr8_2:26723781-26723800 Msa1242430:intron 30.0%
ATTTACCCTATCCATATTGT+GGG + chr8_2:26723789-26723808 None:intergenic 30.0%
AATTTACCCTATCCATATTG+TGG + chr8_2:26723790-26723809 None:intergenic 30.0%
! TTTTATATATGTTGGTCGTG+GGG + chr8_2:26723894-26723913 None:intergenic 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr8_2:26724126-26724145 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr8_2:26724127-26724146 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr8_2:26724209-26724228 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr8_2:26724257-26724276 Msa1242430:intron 30.0%
!! GAATCCTATTCATTTTTGAG+AGG - chr8_2:26724334-26724353 Msa1242430:intron 30.0%
CTTTCCTCTCAAAAATGAAT+AGG + chr8_2:26724341-26724360 None:intergenic 30.0%
TGAGAGGAAAGACTATTTAT+TGG - chr8_2:26724350-26724369 Msa1242430:intron 30.0%
! TTTTAGCAAAGCTACAACTT+AGG - chr8_2:26724764-26724783 Msa1242430:CDS 30.0%
TTTAGCAAAGCTACAACTTA+GGG - chr8_2:26724765-26724784 Msa1242430:CDS 30.0%
ACTCCCACATAAAAATTAGT+GGG - chr8_2:26724826-26724845 Msa1242430:intron 30.0%
! ACACCCACTAATTTTTATGT+GGG + chr8_2:26724832-26724851 None:intergenic 30.0%
!!! ACTCACTTGTTTTTGTTAGA+AGG - chr8_2:26724887-26724906 Msa1242430:intron 30.0%
TTATAGCAGCATACACTTTA+GGG - chr8_2:26724914-26724933 Msa1242430:intron 30.0%
!! TCGTGGTTAACTTGTATTTA+TGG + chr8_2:26725092-26725111 None:intergenic 30.0%
!!! CTTTGCTTACTTTTTATTCG+TGG + chr8_2:26725109-26725128 None:intergenic 30.0%
! TGGTTACAGTCATAAAGTTT+TGG + chr8_2:26725226-26725245 None:intergenic 30.0%
TGGTGGTTTAAATCATTTAG+TGG - chr8_2:26725371-26725390 Msa1242430:intron 30.0%
GGTGGTTTAAATCATTTAGT+GGG - chr8_2:26725372-26725391 Msa1242430:intron 30.0%
! TATTTTCCTATTGGTGAATG+TGG - chr8_2:26725437-26725456 Msa1242430:intron 30.0%
!! CAACTCATATCGATTTAGTT+TGG + chr8_2:26725579-26725598 None:intergenic 30.0%
GAAATCGTGATACATCTTTA+TGG - chr8_2:26725684-26725703 Msa1242430:intron 30.0%
GAAAATCTTGTGAAACTCTT+TGG + chr8_2:26726194-26726213 None:intergenic 30.0%
TGTAGCATAACATCTACTTT+AGG + chr8_2:26726359-26726378 None:intergenic 30.0%
TGATCAATTTAATCTGTTGC+AGG - chr8_2:26726490-26726509 Msa1242430:intron 30.0%
TACCCTAACATGAATAATTC+AGG - chr8_2:26726784-26726803 Msa1242430:intron 30.0%
GCAAGTTTGTGAAAAATAAG+AGG + chr8_2:26727081-26727100 None:intergenic 30.0%
!! ATGTTGAATATTGAGTTGGT+CGG - chr8_2:26727206-26727225 Msa1242430:intron 30.0%
ATTTCCGAATGTAAAAATGG+AGG - chr8_2:26727404-26727423 Msa1242430:CDS 30.0%
TTTCCGAATGTAAAAATGGA+GGG - chr8_2:26727405-26727424 Msa1242430:CDS 30.0%
CTTGAATTAGAGAAAATAGG+AGG - chr8_2:26727437-26727456 Msa1242430:CDS 30.0%
!!! TTATTTTGACAGAGGTTAAG+TGG - chr8_2:26727552-26727571 Msa1242430:intron 30.0%
TTAAGTGGTCAAGAAGATTT+AGG - chr8_2:26727567-26727586 Msa1242430:intron 30.0%
TTGACAAAAAATTCACATGG+GGG - chr8_2:26727669-26727688 Msa1242430:intron 30.0%
CAAAACAAGAGTCATGAAAA+TGG - chr8_2:26727807-26727826 Msa1242430:intron 30.0%
TACTTGCTCCTAAAGAAATT+TGG + chr8_2:26727899-26727918 None:intergenic 30.0%
!!! GTTTTTTCCTTTCGATTTGA+TGG + chr8_2:26727923-26727942 None:intergenic 30.0%
ACGTTTCAACAAAATCACAA+TGG - chr8_2:26728210-26728229 Msa1242430:intron 30.0%
TTTAGTATTATTGTAGGCCT+TGG + chr8_2:26728397-26728416 None:intergenic 30.0%
! GATCATCTGTATTTTCTTTG+CGG - chr8_2:26728463-26728482 Msa1242430:five_prime_UTR 30.0%
TACCAGTAATTTCGATCGAA+GGG + chr8_2:26722131-26722150 None:intergenic 35.0%
TTACCAGTAATTTCGATCGA+AGG + chr8_2:26722132-26722151 None:intergenic 35.0%
ATATAATTTCTTGCAGGGCT+TGG - chr8_2:26722263-26722282 Msa1242430:three_prime_UTR 35.0%
TATAATTTCTTGCAGGGCTT+GGG - chr8_2:26722264-26722283 Msa1242430:three_prime_UTR 35.0%
CATCAATAAGAAGGTAGGAA+TGG + chr8_2:26722453-26722472 None:intergenic 35.0%
CAAAGATAAACCAGGTACAT+AGG + chr8_2:26722632-26722651 None:intergenic 35.0%
TGAATATGGAGCTAATGGTT+TGG + chr8_2:26722677-26722696 None:intergenic 35.0%
TTCTTGACATGCTTCGTTTA+TGG - chr8_2:26722727-26722746 Msa1242430:intron 35.0%
AAAGTTATGCGGCTGTAATT+TGG + chr8_2:26722953-26722972 None:intergenic 35.0%
! ACATTCGCTGGAATTACTTT+TGG - chr8_2:26723045-26723064 Msa1242430:CDS 35.0%
ACCATGATTCAAAAAGGACA+TGG - chr8_2:26723286-26723305 Msa1242430:intron 35.0%
! TCCATGTCCTTTTTGAATCA+TGG + chr8_2:26723290-26723309 None:intergenic 35.0%
GATTCAAAAAGGACATGGAT+AGG - chr8_2:26723291-26723310 Msa1242430:intron 35.0%
! TTCTGTGTACCCTGATTTTA+AGG - chr8_2:26723314-26723333 Msa1242430:intron 35.0%
TTTGCATGCTAATAACACTC+AGG - chr8_2:26723413-26723432 Msa1242430:intron 35.0%
TGGATACATGTTGTTCAACT+TGG - chr8_2:26723452-26723471 Msa1242430:intron 35.0%
GGATACATGTTGTTCAACTT+GGG - chr8_2:26723453-26723472 Msa1242430:intron 35.0%
GGATTAACAGCTTACATCAT+TGG - chr8_2:26723474-26723493 Msa1242430:intron 35.0%
GAAATACCCACAATATGGAT+AGG - chr8_2:26723780-26723799 Msa1242430:intron 35.0%
CAAAGTCCGGATTTATTCTA+AGG + chr8_2:26724486-26724505 None:intergenic 35.0%
CTTAGAATAAATCCGGACTT+TGG - chr8_2:26724484-26724503 Msa1242430:intron 35.0%
AAATATATACAGGGGTTTGC+TGG - chr8_2:26724711-26724730 Msa1242430:CDS 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr8_2:26724737-26724756 Msa1242430:CDS 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr8_2:26724743-26724762 None:intergenic 35.0%
CACTCCCACATAAAAATTAG+TGG - chr8_2:26724825-26724844 Msa1242430:intron 35.0%
! CACACCCACTAATTTTTATG+TGG + chr8_2:26724833-26724852 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + chr8_2:26724868-26724887 None:intergenic 35.0%
GTTATAGCAGCATACACTTT+AGG - chr8_2:26724913-26724932 Msa1242430:intron 35.0%
!! TAATTGCACAGGACTGATTT+TGG + chr8_2:26725299-26725318 None:intergenic 35.0%
AATCAGTCCTGTGCAATTAA+AGG - chr8_2:26725300-26725319 Msa1242430:intron 35.0%
TTGGTTTCCTTTAATTGCAC+AGG + chr8_2:26725310-26725329 None:intergenic 35.0%
!!! GCATTTATTTTGTCGTGTAG+TGG - chr8_2:26725351-26725370 Msa1242430:intron 35.0%
!!! TTTATTTTGTCGTGTAGTGG+TGG - chr8_2:26725354-26725373 Msa1242430:intron 35.0%
TGGGTATAACATGGTTCATA+TGG + chr8_2:26725399-26725418 None:intergenic 35.0%
AAATTTGGACCAATGTCAGT+GGG + chr8_2:26725418-26725437 None:intergenic 35.0%
TAAATTTGGACCAATGTCAG+TGG + chr8_2:26725419-26725438 None:intergenic 35.0%
! TAACGACTGGTACATGTTTT+TGG - chr8_2:26725477-26725496 Msa1242430:intron 35.0%
!!! ACTGGTACATGTTTTTGGTA+GGG - chr8_2:26725482-26725501 Msa1242430:intron 35.0%
! TTTTCGGCCAAAGTTTACAA+CGG - chr8_2:26725518-26725537 Msa1242430:intron 35.0%
AACCAAACCGTTGTAAACTT+TGG + chr8_2:26725528-26725547 None:intergenic 35.0%
GGAGGCTGTTTGATTAAAAA+TGG + chr8_2:26725623-26725642 None:intergenic 35.0%
! ACTTTAAAGGTTTCAATCGG+AGG + chr8_2:26725641-26725660 None:intergenic 35.0%
AGATGTATCACGATTTCACA+TGG + chr8_2:26725681-26725700 None:intergenic 35.0%
CGATATTTAAGCAACTCACT+CGG - chr8_2:26725709-26725728 Msa1242430:intron 35.0%
ATTTGATCCTGTGTTTCATG+AGG + chr8_2:26726036-26726055 None:intergenic 35.0%
TGTCTCAAGTTCAAAACAGA+AGG - chr8_2:26726069-26726088 Msa1242430:intron 35.0%
GCACAACAGGATAAAAAAGA+TGG + chr8_2:26726155-26726174 None:intergenic 35.0%
AGCATAACATCTACTTTAGG+TGG + chr8_2:26726356-26726375 None:intergenic 35.0%
TCCAACAGATCTATACATGT+TGG - chr8_2:26726388-26726407 Msa1242430:intron 35.0%
ACCAACATGTATAGATCTGT+TGG + chr8_2:26726392-26726411 None:intergenic 35.0%
GAAGATACATTTGGAGAGAT+TGG - chr8_2:26726827-26726846 Msa1242430:intron 35.0%
!! ATTATAATTGGTGCTGCTTC+TGG + chr8_2:26726956-26726975 None:intergenic 35.0%
! TGTGAAGTTGATCAGTCATT+AGG + chr8_2:26727318-26727337 None:intergenic 35.0%
!! GGTCAAGAAGATTTAGGTTT+TGG - chr8_2:26727573-26727592 Msa1242430:intron 35.0%
TCATGAAGAGACAATCTAGT+AGG + chr8_2:26727606-26727625 None:intergenic 35.0%
TTGTCTCTTCATGACATACA+TGG - chr8_2:26727612-26727631 Msa1242430:intron 35.0%
!! GGCTGATTTTCAATCATGTT+AGG + chr8_2:26727717-26727736 None:intergenic 35.0%
TCTTTCTGTTTCCATCTAAC+AGG + chr8_2:26727771-26727790 None:intergenic 35.0%
AAATTTGGTCACTCCTAACA+TGG + chr8_2:26727884-26727903 None:intergenic 35.0%
AGGAGTGACCAAATTTCTTT+AGG - chr8_2:26727888-26727907 Msa1242430:intron 35.0%
CAAGTAACCATCAAATCGAA+AGG - chr8_2:26727913-26727932 Msa1242430:intron 35.0%
AGAGTTACCATTCACTATGT+AGG - chr8_2:26727960-26727979 Msa1242430:intron 35.0%
ACCAAGTTACAAGGAAAACA+TGG - chr8_2:26727993-26728012 Msa1242430:intron 35.0%
CCAAGTTACAAGGAAAACAT+GGG - chr8_2:26727994-26728013 Msa1242430:intron 35.0%
ATAAAACTCTACCTAGACAC+CGG + chr8_2:26728117-26728136 None:intergenic 35.0%
!!! TGTCGCTTTTGTCAAAATCA+AGG + chr8_2:26728185-26728204 None:intergenic 35.0%
GTTCAAATGTTTAGCGAGTT+TGG + chr8_2:26728249-26728268 None:intergenic 35.0%
CTATCAATTTGTGAAACTGC+AGG - chr8_2:26728355-26728374 Msa1242430:five_prime_UTR 35.0%
CATAATGAATGCACAACCAA+AGG - chr8_2:26728649-26728668 Msa1242430:intron 35.0%
!! TGGGTTGATGATTTCCAAAC+TGG - chr8_2:26722041-26722060 Msa1242430:three_prime_UTR 40.0%
ACCAGTAATTTCGATCGAAG+GGG + chr8_2:26722130-26722149 None:intergenic 40.0%
TTCTAGTGCTTTACTCTGCA+TGG - chr8_2:26722302-26722321 Msa1242430:CDS 40.0%
AATTCAGGTACCTATGTACC+TGG - chr8_2:26722619-26722638 Msa1242430:intron 40.0%
ATCGGTGAATATGGAGCTAA+TGG + chr8_2:26722682-26722701 None:intergenic 40.0%
TCTACAACGCGATTAAGTGT+AGG + chr8_2:26722904-26722923 None:intergenic 40.0%
AATTTGGATTTGCGACAGCA+AGG + chr8_2:26722937-26722956 None:intergenic 40.0%
! AACTGTGCTTTCGAGTATCA+CGG - chr8_2:26722979-26722998 Msa1242430:CDS 40.0%
AGGCTGAAAGAACAAATTCG+AGG + chr8_2:26723017-26723036 None:intergenic 40.0%
! TCCAGCGAATGTTTTTCTCA+AGG + chr8_2:26723037-26723056 None:intergenic 40.0%
TCGATGCTTAAAGCTCATTG+CGG - chr8_2:26723070-26723089 Msa1242430:CDS 40.0%
! CAGGAGATGTTGTTTGACAT+TGG - chr8_2:26723432-26723451 Msa1242430:intron 40.0%
ATGTGTCAGTTATTCCGAGA+CGG + chr8_2:26724086-26724105 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr8_2:26724260-26724279 Msa1242430:intron 40.0%
CGGAGGTAGTAGTATTCTAT+AGG - chr8_2:26724277-26724296 Msa1242430:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr8_2:26724736-26724755 Msa1242430:CDS 40.0%
CACTCCCACATAAAAACTAG+TGG + chr8_2:26724744-26724763 None:intergenic 40.0%
GTGTTCTAGCAAATGCCTAT+AGG - chr8_2:26724850-26724869 Msa1242430:intron 40.0%
ACTCCCACATGAAAACTAGT+GGG - chr8_2:26724975-26724994 Msa1242430:intron 40.0%
!!! ACACCCACTAGTTTTCATGT+GGG + chr8_2:26724981-26725000 None:intergenic 40.0%
CCTCATATGTAAGATTCACG+CGG + chr8_2:26725143-26725162 None:intergenic 40.0%
AGGCTTGACAACTAATGACT+TGG + chr8_2:26725246-26725265 None:intergenic 40.0%
CAATGTCAGTGGGTATAACA+TGG + chr8_2:26725408-26725427 None:intergenic 40.0%
CATGTTATACCCACTGACAT+TGG - chr8_2:26725406-26725425 Msa1242430:intron 40.0%
TATGGTCCACATTCACCAAT+AGG + chr8_2:26725446-26725465 None:intergenic 40.0%
!!! GACTGGTACATGTTTTTGGT+AGG - chr8_2:26725481-26725500 Msa1242430:intron 40.0%
! TGGACAGCTCACAATTTGTT+TGG + chr8_2:26725603-26725622 None:intergenic 40.0%
! TGAAACTCTTTGGAAGAGGT+AGG + chr8_2:26726184-26726203 None:intergenic 40.0%
! CTTGTGAAACTCTTTGGAAG+AGG + chr8_2:26726188-26726207 None:intergenic 40.0%
! GATCTATACATGTTGGTCTC+AGG - chr8_2:26726395-26726414 Msa1242430:intron 40.0%
GCAAGTGCAGAAGATACATT+TGG - chr8_2:26726818-26726837 Msa1242430:intron 40.0%
TCTTTGGTCCTAACAGTGAA+AGG + chr8_2:26726875-26726894 None:intergenic 40.0%
! TGCTTCTGGATTTGCTTGTA+AGG + chr8_2:26726942-26726961 None:intergenic 40.0%
!! ATATTGAGTTGGTCGGTCAT+TGG - chr8_2:26727213-26727232 Msa1242430:intron 40.0%
TGATCAGTCATTAGGTGATG+TGG + chr8_2:26727310-26727329 None:intergenic 40.0%
!! GGTCCCTCCATTTTTACATT+CGG + chr8_2:26727411-26727430 None:intergenic 40.0%
TGAAGAGACAATCTAGTAGG+TGG + chr8_2:26727603-26727622 None:intergenic 40.0%
TCTCTTCATGACATACATGG+TGG - chr8_2:26727615-26727634 Msa1242430:intron 40.0%
! TACATGGTGGAAACAACACA+AGG - chr8_2:26727628-26727647 Msa1242430:intron 40.0%
AGAAGCTAAGTCCTGTTAGA+TGG - chr8_2:26727757-26727776 Msa1242430:intron 40.0%
CAGATAACCTTAGCCATGTT+AGG - chr8_2:26727868-26727887 Msa1242430:intron 40.0%
GTCTTGTCCTACATAGTGAA+TGG + chr8_2:26727970-26727989 None:intergenic 40.0%
CAAGACAGAACCAAGTTACA+AGG - chr8_2:26727984-26728003 Msa1242430:intron 40.0%
! CCCATGTTTTCCTTGTAACT+TGG + chr8_2:26727997-26728016 None:intergenic 40.0%
TGTAAATAATGCCGGTGTCT+AGG - chr8_2:26728103-26728122 Msa1242430:CDS 40.0%
TAGCGAGTTTGGCAAAATCA+CGG + chr8_2:26728238-26728257 None:intergenic 40.0%
GAAACTGCAGGAGAAAAGTT+TGG - chr8_2:26728367-26728386 Msa1242430:five_prime_UTR 40.0%
!! ATCAAACTTGTTGCTAGCTC+TGG - chr8_2:26728704-26728723 Msa1242430:five_prime_UTR 40.0%
GAGATGGCAAGATACCAGTT+TGG + chr8_2:26722058-26722077 None:intergenic 45.0%
ACTGGTATCTTGCCATCTCT+TGG - chr8_2:26722059-26722078 Msa1242430:three_prime_UTR 45.0%
CCAGTAATTTCGATCGAAGG+GGG + chr8_2:26722129-26722148 None:intergenic 45.0%
CGTAACACTATGTCGACACA+TGG - chr8_2:26722215-26722234 Msa1242430:three_prime_UTR 45.0%
! ATGGAGCTAATGGTTTGGAG+AGG + chr8_2:26722672-26722691 None:intergenic 45.0%
GCTGCTATGATCGGTGAATA+TGG + chr8_2:26722691-26722710 None:intergenic 45.0%
TCCAAACTCGCTGCTATGAT+CGG + chr8_2:26722700-26722719 None:intergenic 45.0%
GAGTCAGTTCTCTCTTTGCA+AGG - chr8_2:26722760-26722779 Msa1242430:CDS 45.0%
GCCTTGAGAAAAACATTCGC+TGG - chr8_2:26723033-26723052 Msa1242430:CDS 45.0%
AGCACAGTGTACTGCAAACA+AGG + chr8_2:26723235-26723254 None:intergenic 45.0%
TTGTTTGCAGTACACTGTGC+TGG - chr8_2:26723234-26723253 Msa1242430:intron 45.0%
ATATATGTTGGTCGTGGGGA+GGG + chr8_2:26723890-26723909 None:intergenic 45.0%
TATATATGTTGGTCGTGGGG+AGG + chr8_2:26723891-26723910 None:intergenic 45.0%
GACAAATACTCTCTCCGTCT+CGG - chr8_2:26724069-26724088 Msa1242430:intron 45.0%
GTGATTGAGACTCCAAAGTC+CGG + chr8_2:26724499-26724518 None:intergenic 45.0%
CACTCCCACATGAAAACTAG+TGG - chr8_2:26724974-26724993 Msa1242430:intron 45.0%
!!! CACACCCACTAGTTTTCATG+TGG + chr8_2:26724982-26725001 None:intergenic 45.0%
CCGCGTGAATCTTACATATG+AGG - chr8_2:26725140-26725159 Msa1242430:intron 45.0%
! GGGTGCAACAGTTCGATTTT+CGG - chr8_2:26725502-26725521 Msa1242430:intron 45.0%
GGCCAAAGTTTACAACGGTT+TGG - chr8_2:26725523-26725542 Msa1242430:intron 45.0%
CCTGTGTTTCATGAGGTAGA+TGG + chr8_2:26726029-26726048 None:intergenic 45.0%
CCATCTACCTCATGAAACAC+AGG - chr8_2:26726026-26726045 Msa1242430:intron 45.0%
AGGTAGGATTTCTGCACAAC+AGG + chr8_2:26726168-26726187 None:intergenic 45.0%
! GATCTCATTCGCAGTGTTGA+TGG - chr8_2:26726512-26726531 Msa1242430:intron 45.0%
AGCAGCAACCTTTCACTGTT+AGG - chr8_2:26726864-26726883 Msa1242430:intron 45.0%
AGCAGCTCATCCAATGAATC+AGG + chr8_2:26728035-26728054 None:intergenic 45.0%
GATGAGCTGCTCAAGATTGT+TGG - chr8_2:26728044-26728063 Msa1242430:CDS 45.0%
ACTGCAGGAGAAAAGTTTGG+AGG - chr8_2:26728370-26728389 Msa1242430:five_prime_UTR 45.0%
CTGCAGGAGAAAAGTTTGGA+GGG - chr8_2:26728371-26728390 Msa1242430:five_prime_UTR 45.0%
! GACCTTTGTGTCATTCGAGA+CGG - chr8_2:26728439-26728458 Msa1242430:five_prime_UTR 45.0%
!!! TATATATATTTTATATATGT+TGG + chr8_2:26723902-26723921 None:intergenic 5.0%
!!! TTAAATTATATTTTTTAACA+AGG - chr8_2:26723967-26723986 Msa1242430:CDS 5.0%
!!! TAAATTATATTTTTTAACAA+GGG - chr8_2:26723968-26723987 Msa1242430:CDS 5.0%
!!! AATAAAAATAAAAAATTTTG+AGG + chr8_2:26724045-26724064 None:intergenic 5.0%
!! TATATATATATATATATATG+GGG + chr8_2:26725015-26725034 None:intergenic 5.0%
TGGACTCTTGCTCCAAGAGA+TGG + chr8_2:26722074-26722093 None:intergenic 50.0%
CCCCCTTCGATCGAAATTAC+TGG - chr8_2:26722126-26722145 Msa1242430:three_prime_UTR 50.0%
ACCGATCATAGCAGCGAGTT+TGG - chr8_2:26722696-26722715 Msa1242430:intron 50.0%
! ATGCTTGCGCGAATCGCTTT+TGG + chr8_2:26726126-26726145 None:intergenic 50.0%
! CATGTTGGTCTCAGGATCAG+TGG - chr8_2:26726403-26726422 Msa1242430:intron 50.0%
GGTCACTCCTAACATGGCTA+AGG + chr8_2:26727878-26727897 None:intergenic 50.0%
GAGAAAAGTTTGGAGGGCCA+AGG - chr8_2:26728377-26728396 Msa1242430:five_prime_UTR 50.0%
CACCGTCTCGAATGACACAA+AGG + chr8_2:26728444-26728463 None:intergenic 50.0%
ATACTCGGTTCACGTGTGAG+TGG - chr8_2:26728790-26728809 Msa1242430:five_prime_UTR 50.0%
CTTGCAGGGCTTGGGACAAG+TGG - chr8_2:26722272-26722291 Msa1242430:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 26721990 26728817 26721990 ID=Msa1242430;Name=Msa1242430
chr8_2 mRNA 26721990 26728817 26721990 ID=Msa1242430-mRNA-1;Parent=Msa1242430;Name=Msa1242430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=349|0.77|0.9|1|1|1|10|310|534
chr8_2 exon 26721990 26722430 26721990 ID=Msa1242430-mRNA-1:exon:9402;Parent=Msa1242430-mRNA-1
chr8_2 exon 26722742 26723243 26722742 ID=Msa1242430-mRNA-1:exon:9401;Parent=Msa1242430-mRNA-1
chr8_2 exon 26723816 26724001 26723816 ID=Msa1242430-mRNA-1:exon:9400;Parent=Msa1242430-mRNA-1
chr8_2 exon 26724263 26724295 26724263 ID=Msa1242430-mRNA-1:exon:9399;Parent=Msa1242430-mRNA-1
chr8_2 exon 26724383 26724481 26724383 ID=Msa1242430-mRNA-1:exon:9398;Parent=Msa1242430-mRNA-1
chr8_2 exon 26724583 26724822 26724583 ID=Msa1242430-mRNA-1:exon:9397;Parent=Msa1242430-mRNA-1
chr8_2 exon 26727295 26727527 26727295 ID=Msa1242430-mRNA-1:exon:9396;Parent=Msa1242430-mRNA-1
chr8_2 exon 26728026 26728181 26728026 ID=Msa1242430-mRNA-1:exon:9395;Parent=Msa1242430-mRNA-1
chr8_2 exon 26728313 26728528 26728313 ID=Msa1242430-mRNA-1:exon:9394;Parent=Msa1242430-mRNA-1
chr8_2 exon 26728660 26728817 26728660 ID=Msa1242430-mRNA-1:exon:9393;Parent=Msa1242430-mRNA-1
chr8_2 five_prime_UTR 26728660 26728817 26728660 ID=Msa1242430-mRNA-1:five_prime_utr;Parent=Msa1242430-mRNA-1
chr8_2 five_prime_UTR 26728338 26728528 26728338 ID=Msa1242430-mRNA-1:five_prime_utr;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26728313 26728337 26728313 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26728026 26728181 26728026 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26727295 26727527 26727295 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26724583 26724822 26724583 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26724383 26724481 26724383 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26724263 26724295 26724263 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26723816 26724001 26723816 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26722742 26723243 26722742 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 CDS 26722300 26722430 26722300 ID=Msa1242430-mRNA-1:cds;Parent=Msa1242430-mRNA-1
chr8_2 three_prime_UTR 26721990 26722299 26721990 ID=Msa1242430-mRNA-1:three_prime_utr;Parent=Msa1242430-mRNA-1
Gene Sequence

>Msa1242430

ATGATCATAAGAAAATTGCAAAAAGGTACCTATGTACCTGGTTTATCTTTGATGTTTGTTCAACTGCACCTCTCCAAACCATTAGCTCCATATTCACCGATCATAGCAGCGAGTTTGGATTCAGAATTCTTGACATGCTTCGTTTATGGCGACTCAGACGAGTCAGTTCTCTCTTTGCAAGATAGGTACCATGATTCAAAAAGGACATGGATAGGTTCTGTGTACCCTGATTTTAAGGAAATGAGTCTTTGGGATAGATATGTGATAGCAATGTATTGGTCAATTGTGACATTAACTACTACTGGATATGGAGATTTGCATGCTAATAACACTCAGGAGATGTTGTTTGACATTGGATACATGTTGTTCAACTTGGGATTAACAGCTTACATCATTGGTAACATGACAAATCTTAGAGATACAGTGAGAGCAGCAACAGAATTTGCATCAAAAAACCATCTACCTCATGAAACACAGGATCAAATATTATCACACTTATGTCTCAAGTTCAAAACAGAAGGACTAAAACAGCAAGAAACAATAAATGGCATGCCAAAAGCGATTCGCGCAAGCATTGCACACCATCTTTTTTATCCTGTTGTGCAGAAATCCTACCTCTTCCAAAGAGTTTCACAAGATTTTCTATTTCAACTGGTTACAGAAATAGAAGCAGAGTATTTTCCACCTAAAGTAGATGTTATGCTACAAAATGAGTCTCCAACAGATCTATACATGTTGGTCTCAGGATCAGTGGATCTCATTCGCAGTGTTGATGGTCGTGAACAAGTTTTGATGAAGGCAAGTGCAGAAGATACATTTGGAGAGATTGGAGTTTTATACAATAAGCAGCAACCTTTCACTGTTAGGACCAAAGAGCTTTCACAAATTTTAAGGCTTAGCAGAACTTCATTGATGAATGCCTTACAAGCAAATCCAGAAGCAGCACCAATTATAATGTCAAATCTTTTTATGAGGTTAAGTGGTCAAGAAGATTTAGGTTTTGGACATCCACCTACTAGATTGTCTCTTCATGACATACATGGTGGAAACAACACAAGGAGAAATTCATGTGATGAATTGACAAAAAATTCACATGGGGGAGACATATTACATGACATGATACCTAACATGATTGAAAATCAGCCAGAAAAAGAAGCAAATGAAAAGAAGCTAAGTCCTGTTAGATGGAAACAGAAAGATCAAGAAGACAAGCAACAAAACAAGAGTCATGAAAATGGACAGACATTAGATGAACATATAATAGACTTTATGGAGACAGATAACCTTAGCCATGTTAGGAGTGACCAAATTTCTTTAGGAGCAAGTAACCATCAAATCGAAAGGAAAAAACCGATTTTTGTTGATAAGAGAGTTACCATTCACTATGTAGGACAAGACAGAACCAAGTTACAAGGAAAACATGGGAAGTTGATAATTTTACCTGATTCATTGGATGAGCTGCTCAAGATTGTTGGAGAAAAGTTTGGAGGGCCAAGGCCTACAATAATACTAAATTCAGAGAATGCAGAGATAGATGACCTTTGTGTCATTCGAGACGGTGATCATCTGTATTTTCTTTGCGGCGACAACGAAACTTTGAGCTAA

Protein sequence

>Msa1242430

MIIRKLQKGTYVPGLSLMFVQLHLSKPLAPYSPIIAASLDSEFLTCFVYGDSDESVLSLQDRYHDSKRTWIGSVYPDFKEMSLWDRYVIAMYWSIVTLTTTGYGDLHANNTQEMLFDIGYMLFNLGLTAYIIGNMTNLRDTVRAATEFASKNHLPHETQDQILSHLCLKFKTEGLKQQETINGMPKAIRASIAHHLFYPVVQKSYLFQRVSQDFLFQLVTEIEAEYFPPKVDVMLQNESPTDLYMLVSGSVDLIRSVDGREQVLMKASAEDTFGEIGVLYNKQQPFTVRTKELSQILRLSRTSLMNALQANPEAAPIIMSNLFMRLSGQEDLGFGHPPTRLSLHDIHGGNNTRRNSCDELTKNSHGGDILHDMIPNMIENQPEKEANEKKLSPVRWKQKDQEDKQQNKSHENGQTLDEHIIDFMETDNLSHVRSDQISLGASNHQIERKKPIFVDKRVTIHYVGQDRTKLQGKHGKLIILPDSLDELLKIVGEKFGGPRPTIILNSENAEIDDLCVIRDGDHLYFLCGDNETLS*