Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819210 | XP_027332903.1 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 8.42e-41 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819210 | sp|P38385|SC61G_ORYSJ | 94.203 | 69 | 4 | 0 | 1 | 69 | 1 | 69 | 2.43e-41 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819210 | A0A4D6MJ31 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 5.14e-41 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045730 | Msa0819210 | 0.818405 | 1.993969e-52 | -8.615850e-47 |
| Msa0052300 | Msa0819210 | -0.806756 | 7.046235e-50 | -8.615850e-47 |
| Msa0052350 | Msa0819210 | -0.811345 | 7.335275e-51 | -8.615850e-47 |
| Msa0116130 | Msa0819210 | 0.806848 | 6.737951e-50 | -8.615850e-47 |
| Msa0615580 | Msa0819210 | 0.802997 | 4.301312e-49 | -8.615850e-47 |
| Msa0619860 | Msa0819210 | 0.819576 | 1.079913e-52 | -8.615850e-47 |
| Msa0623200 | Msa0819210 | 0.838501 | 2.769898e-57 | -8.615850e-47 |
| Msa0699190 | Msa0819210 | 0.817096 | 3.936900e-52 | -8.615850e-47 |
| Msa0706500 | Msa0819210 | 0.812607 | 3.894452e-51 | -8.615850e-47 |
| Msa0729200 | Msa0819210 | 0.817388 | 3.384967e-52 | -8.615850e-47 |
| Msa0769590 | Msa0819210 | 0.822148 | 2.765463e-53 | -8.615850e-47 |
| Msa0806880 | Msa0819210 | 0.826427 | 2.729671e-54 | -8.615850e-47 |
| Msa0819060 | Msa0819210 | 0.803913 | 2.777720e-49 | -8.615850e-47 |
| Msa0819210 | Msa0838370 | 0.800022 | 1.751203e-48 | -8.615850e-47 |
| Msa0819210 | Msa0858440 | 0.810760 | 9.818560e-51 | -8.615850e-47 |
| Msa0819210 | Msa0888810 | 0.800506 | 1.396086e-48 | -8.615850e-47 |
| Msa0819210 | Msa0966010 | 0.805374 | 1.376594e-49 | -8.615850e-47 |
| Msa0819210 | Msa0994290 | 0.807117 | 5.911850e-50 | -8.615850e-47 |
| Msa0819210 | Msa1072710 | 0.811861 | 5.664408e-51 | -8.615850e-47 |
| Msa0819210 | Msa1166870 | 0.805909 | 1.063262e-49 | -8.615850e-47 |
| Msa0819210 | Msa1369190 | 0.846708 | 1.833212e-59 | -8.615850e-47 |
| Msa0819210 | Msa1413500 | 0.821143 | 4.721715e-53 | -8.615850e-47 |
| Msa0819210 | Msa1418960 | -0.806093 | 9.725490e-50 | -8.615850e-47 |
| Msa0819210 | Msa1465260 | 0.809772 | 1.604298e-50 | -8.615850e-47 |
| Msa0146070 | Msa0819210 | -0.800720 | 1.262562e-48 | -8.615850e-47 |
| Msa0218830 | Msa0819210 | 0.814434 | 1.543656e-51 | -8.615850e-47 |
| Msa0384880 | Msa0819210 | 0.801161 | 1.026118e-48 | -8.615850e-47 |
| Msa0419520 | Msa0819210 | 0.800755 | 1.241814e-48 | -8.615850e-47 |
| Msa0348830 | Msa0819210 | 0.831549 | 1.567534e-55 | -8.615850e-47 |
| Msa0544540 | Msa0819210 | 0.803498 | 3.387138e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819210 | MtrunA17_Chr5g0438181 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 1.09e-44 | 139 |
| Msa0819210 | MtrunA17_Chr4g0071611 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 1.72e-44 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819210 | AT4G24920.1 | 92.647 | 68 | 5 | 0 | 1 | 68 | 1 | 68 | 4.96e-41 | 128 |
| Msa0819210 | AT5G50460.1 | 92.647 | 68 | 5 | 0 | 1 | 68 | 1 | 68 | 4.96e-41 | 128 |
| Msa0819210 | AT3G48570.1 | 86.957 | 69 | 9 | 0 | 1 | 69 | 1 | 69 | 2.17e-39 | 124 |
Find 37 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCAATTCACGCGAAAA+TGG | 0.229980 | 5_3:-55357413 | Msa0819210:exon |
| TGAGAAATGAAATTGAAATT+AGG | 0.298155 | 5_3:+55357444 | None:intergenic |
| CACTGAATGTTCTATTGAAA+TGG | 0.316272 | 5_3:+55355584 | None:intergenic |
| AACGAGCCTAACGCTGTCTT+TGG | 0.352610 | 5_3:+55357351 | None:intergenic |
| CGCGATTGGTTTCGTTGTGA+TGG | 0.380019 | 5_3:-55357185 | Msa0819210:CDS |
| TTATCTATATTTCTTATCTT+CGG | 0.410507 | 5_3:-55355530 | Msa0819210:three_prime_UTR |
| TACCTTTGCGATCGGGTTTG+TGG | 0.417825 | 5_3:+55357320 | None:intergenic |
| CCAACGATGATGTTGTTGAT+TGG | 0.436566 | 5_3:+55357127 | None:intergenic |
| ACATGTTACATAAAACTGTA+AGG | 0.442953 | 5_3:+55355500 | None:intergenic |
| TAAATTTCTAAAGACTAGCT+TGG | 0.447992 | 5_3:-55355345 | None:intergenic |
| TTCGTTGTGATGGGATTCGT+TGG | 0.449995 | 5_3:-55357175 | Msa0819210:CDS |
| CATCATCGTTGGATCTGGTT+AGG | 0.451612 | 5_3:-55357116 | Msa0819210:intron |
| GGGGTTATACCTTTGCGATC+GGG | 0.456406 | 5_3:+55357313 | None:intergenic |
| AACAACATCATCGTTGGATC+TGG | 0.457089 | 5_3:-55357121 | Msa0819210:CDS |
| TGGATCGAAGACGGAATCAA+TGG | 0.467824 | 5_3:+55357387 | None:intergenic |
| AGGGGTTATACCTTTGCGAT+CGG | 0.473227 | 5_3:+55357312 | None:intergenic |
| GATTATTTCTGCAGGATGAC+GGG | 0.476757 | 5_3:-55355658 | Msa0819210:intron |
| GTTGCTGTTCGTACCGCGAT+TGG | 0.481738 | 5_3:-55357199 | Msa0819210:CDS |
| GCGATTGGTTTCGTTGTGAT+GGG | 0.488493 | 5_3:-55357184 | Msa0819210:CDS |
| GGTGAAGGAAGCAGATGAAT+TGG | 0.489333 | 5_3:+55357487 | None:intergenic |
| CGCGGTACGAACAGCAACCT+TGG | 0.492229 | 5_3:+55357204 | None:intergenic |
| TGATTATTTCTGCAGGATGA+CGG | 0.511253 | 5_3:-55355659 | Msa0819210:intron |
| TTCTCTGAGTGGATCGAAGA+CGG | 0.515282 | 5_3:+55357378 | None:intergenic |
| TCGTTGTGATGGGATTCGTT+GGG | 0.519900 | 5_3:-55357174 | Msa0819210:CDS |
| ACTGAATGTTCTATTGAAAT+GGG | 0.522320 | 5_3:+55355585 | None:intergenic |
| CCTCAGGAAAGTTGTGAAGC+AGG | 0.527193 | 5_3:-55355624 | Msa0819210:three_prime_UTR |
| CCAATCAACAACATCATCGT+TGG | 0.538152 | 5_3:-55357127 | Msa0819210:CDS |
| GAAAGTTGTGAAGCAGGAGG+AGG | 0.550624 | 5_3:-55355618 | Msa0819210:three_prime_UTR |
| ACGGGAATTACAATCGCCTC+AGG | 0.556837 | 5_3:-55355640 | Msa0819210:three_prime_UTR |
| AATTCGCCAAAGACAGCGTT+AGG | 0.569841 | 5_3:-55357357 | Msa0819210:CDS |
| TTGATTTGTAGAATTCTCCA+AGG | 0.581841 | 5_3:-55357221 | Msa0819210:intron |
| TTGAAATTAGGAGAATGAGA+AGG | 0.584098 | 5_3:+55357456 | None:intergenic |
| CCTGCTTCACAACTTTCCTG+AGG | 0.626602 | 5_3:+55355624 | None:intergenic |
| TGCCACAAACCCGATCGCAA+AGG | 0.648616 | 5_3:-55357322 | Msa0819210:intron |
| CAGGAAAGTTGTGAAGCAGG+AGG | 0.667526 | 5_3:-55355621 | Msa0819210:three_prime_UTR |
| CATCACAACGAAACCAATCG+CGG | 0.678324 | 5_3:+55357186 | None:intergenic |
| TCTTTGGCGAATTCTCTGAG+TGG | 0.681670 | 5_3:+55357367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAAGAAAAAAAAAA+TGG | - | chr5_3:55356124-55356143 | Msa0819210:intron | 10.0% |
| !!! | TTTTGAAAAGAAAAAAAAAA+TGG | - | chr5_3:55356124-55356143 | Msa0819210:intron | 10.0% |
| !!! | TTGATTTGAATGAAATATTT+TGG | - | chr5_3:55355830-55355849 | Msa0819210:intron | 15.0% |
| !!! | TTTTATAATGTTCATCTAAA+TGG | - | chr5_3:55356448-55356467 | Msa0819210:intron | 15.0% |
| !! | ACAAAATAAACATTATATTG+AGG | + | chr5_3:55357000-55357019 | None:intergenic | 15.0% |
| !!! | ATAATGTTTATTTTGTCTTT+TGG | - | chr5_3:55357004-55357023 | Msa0819210:intron | 15.0% |
| !! | TTATCTATATTTCTTATCTT+CGG | - | chr5_3:55357317-55357336 | Msa0819210:intron | 15.0% |
| !!! | TTGATTTGAATGAAATATTT+TGG | - | chr5_3:55355830-55355849 | Msa0819210:intron | 15.0% |
| !!! | TTTTATAATGTTCATCTAAA+TGG | - | chr5_3:55356448-55356467 | Msa0819210:intron | 15.0% |
| !! | ACAAAATAAACATTATATTG+AGG | + | chr5_3:55357000-55357019 | None:intergenic | 15.0% |
| !!! | ATAATGTTTATTTTGTCTTT+TGG | - | chr5_3:55357004-55357023 | Msa0819210:intron | 15.0% |
| !! | TTATCTATATTTCTTATCTT+CGG | - | chr5_3:55357317-55357336 | Msa0819210:intron | 15.0% |
| !! | TGAGAAATGAAATTGAAATT+AGG | + | chr5_3:55355406-55355425 | None:intergenic | 20.0% |
| !! | TAAATCGAATAGAGAATTTA+GGG | + | chr5_3:55355557-55355576 | None:intergenic | 20.0% |
| !! | TGATTTAAATCTCTATATTG+TGG | - | chr5_3:55355579-55355598 | Msa0819210:three_prime_UTR | 20.0% |
| !!! | ATTTGAATGAAATATTTTGG+TGG | - | chr5_3:55355833-55355852 | Msa0819210:intron | 20.0% |
| !!! | ATTTTTTGTATGATTTGCAA+TGG | - | chr5_3:55356331-55356350 | Msa0819210:intron | 20.0% |
| !! | AAACATATTTGTGACAATAA+CGG | - | chr5_3:55356584-55356603 | Msa0819210:intron | 20.0% |
| !! | TGAGAAATGAAATTGAAATT+AGG | + | chr5_3:55355406-55355425 | None:intergenic | 20.0% |
| !! | TAAATCGAATAGAGAATTTA+GGG | + | chr5_3:55355557-55355576 | None:intergenic | 20.0% |
| !! | TGATTTAAATCTCTATATTG+TGG | - | chr5_3:55355579-55355598 | Msa0819210:three_prime_UTR | 20.0% |
| !!! | ATTTGAATGAAATATTTTGG+TGG | - | chr5_3:55355833-55355852 | Msa0819210:intron | 20.0% |
| !!! | ATTTTTTGTATGATTTGCAA+TGG | - | chr5_3:55356331-55356350 | Msa0819210:intron | 20.0% |
| !! | AAACATATTTGTGACAATAA+CGG | - | chr5_3:55356584-55356603 | Msa0819210:intron | 20.0% |
| ! | AAATCGAATAGAGAATTTAG+GGG | + | chr5_3:55355556-55355575 | None:intergenic | 25.0% |
| ! | GTAAATCGAATAGAGAATTT+AGG | + | chr5_3:55355558-55355577 | None:intergenic | 25.0% |
| !!! | AATGAAATATTTTGGTGGAA+TGG | - | chr5_3:55355838-55355857 | Msa0819210:intron | 25.0% |
| ! | TGAATTTCTGATGTAAATGT+TGG | - | chr5_3:55355867-55355886 | Msa0819210:intron | 25.0% |
| ! | GAAACAATTTGATTGAATCA+AGG | - | chr5_3:55355896-55355915 | Msa0819210:intron | 25.0% |
| !!! | TTGAATCAAGGTTATTTTGA+AGG | - | chr5_3:55355908-55355927 | Msa0819210:intron | 25.0% |
| !!! | TGAATCAAGGTTATTTTGAA+GGG | - | chr5_3:55355909-55355928 | Msa0819210:intron | 25.0% |
| !! | GGTTTTTGTAAGATTTACAA+TGG | - | chr5_3:55355980-55355999 | Msa0819210:intron | 25.0% |
| ! | TTGAGATCTTAATATGAATC+AGG | - | chr5_3:55356233-55356252 | Msa0819210:intron | 25.0% |
| ! | TGAGATCTTAATATGAATCA+GGG | - | chr5_3:55356234-55356253 | Msa0819210:intron | 25.0% |
| ! | ACAAGTAAATCCATTATGTT+AGG | + | chr5_3:55356307-55356326 | None:intergenic | 25.0% |
| ! | TGTTCTTAGTTATGATTGAT+TGG | - | chr5_3:55356401-55356420 | Msa0819210:intron | 25.0% |
| ! | ATTGAAAACAACTTTGCAAT+TGG | + | chr5_3:55356634-55356653 | None:intergenic | 25.0% |
| ! | GAGAATTTAGTATTTACACT+AGG | - | chr5_3:55356930-55356949 | Msa0819210:intron | 25.0% |
| ! | TTTGTATATGCAAAGTTCTT+TGG | - | chr5_3:55357040-55357059 | Msa0819210:intron | 25.0% |
| ! | ACTGAATGTTCTATTGAAAT+GGG | + | chr5_3:55357265-55357284 | None:intergenic | 25.0% |
| ! | ACATGTTACATAAAACTGTA+AGG | + | chr5_3:55357350-55357369 | None:intergenic | 25.0% |
| ! | AAATCGAATAGAGAATTTAG+GGG | + | chr5_3:55355556-55355575 | None:intergenic | 25.0% |
| ! | GTAAATCGAATAGAGAATTT+AGG | + | chr5_3:55355558-55355577 | None:intergenic | 25.0% |
| !!! | AATGAAATATTTTGGTGGAA+TGG | - | chr5_3:55355838-55355857 | Msa0819210:intron | 25.0% |
| ! | TGAATTTCTGATGTAAATGT+TGG | - | chr5_3:55355867-55355886 | Msa0819210:intron | 25.0% |
| ! | GAAACAATTTGATTGAATCA+AGG | - | chr5_3:55355896-55355915 | Msa0819210:intron | 25.0% |
| !!! | TTGAATCAAGGTTATTTTGA+AGG | - | chr5_3:55355908-55355927 | Msa0819210:intron | 25.0% |
| !!! | TGAATCAAGGTTATTTTGAA+GGG | - | chr5_3:55355909-55355928 | Msa0819210:intron | 25.0% |
| !! | GGTTTTTGTAAGATTTACAA+TGG | - | chr5_3:55355980-55355999 | Msa0819210:intron | 25.0% |
| ! | TTGAGATCTTAATATGAATC+AGG | - | chr5_3:55356233-55356252 | Msa0819210:intron | 25.0% |
| ! | TGAGATCTTAATATGAATCA+GGG | - | chr5_3:55356234-55356253 | Msa0819210:intron | 25.0% |
| ! | ACAAGTAAATCCATTATGTT+AGG | + | chr5_3:55356307-55356326 | None:intergenic | 25.0% |
| ! | TGTTCTTAGTTATGATTGAT+TGG | - | chr5_3:55356401-55356420 | Msa0819210:intron | 25.0% |
| ! | ATTGAAAACAACTTTGCAAT+TGG | + | chr5_3:55356634-55356653 | None:intergenic | 25.0% |
| ! | GAGAATTTAGTATTTACACT+AGG | - | chr5_3:55356930-55356949 | Msa0819210:intron | 25.0% |
| ! | TTTGTATATGCAAAGTTCTT+TGG | - | chr5_3:55357040-55357059 | Msa0819210:intron | 25.0% |
| ! | ACTGAATGTTCTATTGAAAT+GGG | + | chr5_3:55357265-55357284 | None:intergenic | 25.0% |
| ! | ACATGTTACATAAAACTGTA+AGG | + | chr5_3:55357350-55357369 | None:intergenic | 25.0% |
| TTGAAATTAGGAGAATGAGA+AGG | + | chr5_3:55355394-55355413 | None:intergenic | 30.0% | |
| !! | TTGATTTGTAGAATTCTCCA+AGG | - | chr5_3:55355626-55355645 | Msa0819210:three_prime_UTR | 30.0% |
| !!! | GAATCAAGGTTATTTTGAAG+GGG | - | chr5_3:55355910-55355929 | Msa0819210:intron | 30.0% |
| !!! | AATCAAGGTTATTTTGAAGG+GGG | - | chr5_3:55355911-55355930 | Msa0819210:intron | 30.0% |
| !!! | TTGGTTGTTTTTATGCATAG+TGG | - | chr5_3:55355942-55355961 | Msa0819210:intron | 30.0% |
| !!! | TGGTTGTTTTTATGCATAGT+GGG | - | chr5_3:55355943-55355962 | Msa0819210:intron | 30.0% |
| ! | TTAGTATTGTGTTACTCATG+TGG | - | chr5_3:55356038-55356057 | Msa0819210:intron | 30.0% |
| TTTAATGTGATCACATGTGT+TGG | - | chr5_3:55356152-55356171 | Msa0819210:intron | 30.0% | |
| GAGATCTTAATATGAATCAG+GGG | - | chr5_3:55356235-55356254 | Msa0819210:intron | 30.0% | |
| ! | GATTTTCATGCCTAACATAA+TGG | - | chr5_3:55356294-55356313 | Msa0819210:intron | 30.0% |
| ! | TTGAATGTAATCAGAAGTGT+CGG | + | chr5_3:55356757-55356776 | None:intergenic | 30.0% |
| CATAGGTAGTAAAAACAGAT+AGG | + | chr5_3:55356871-55356890 | None:intergenic | 30.0% | |
| ! | CTTATGTCATAGGATGTTTT+TGG | - | chr5_3:55356962-55356981 | Msa0819210:intron | 30.0% |
| !! | TGAATCCTTTAAGACATATG+AGG | + | chr5_3:55357117-55357136 | None:intergenic | 30.0% |
| !! | TAACTCTTGATTATTTCTGC+AGG | - | chr5_3:55357181-55357200 | Msa0819210:CDS | 30.0% |
| CACTGAATGTTCTATTGAAA+TGG | + | chr5_3:55357266-55357285 | None:intergenic | 30.0% | |
| AGGAGGAAAAAGTTTAGATA+AGG | - | chr5_3:55357415-55357434 | Msa0819210:exon | 30.0% | |
| TTGAAATTAGGAGAATGAGA+AGG | + | chr5_3:55355394-55355413 | None:intergenic | 30.0% | |
| !! | TTGATTTGTAGAATTCTCCA+AGG | - | chr5_3:55355626-55355645 | Msa0819210:three_prime_UTR | 30.0% |
| !!! | GAATCAAGGTTATTTTGAAG+GGG | - | chr5_3:55355910-55355929 | Msa0819210:intron | 30.0% |
| !!! | AATCAAGGTTATTTTGAAGG+GGG | - | chr5_3:55355911-55355930 | Msa0819210:intron | 30.0% |
| !!! | TTGGTTGTTTTTATGCATAG+TGG | - | chr5_3:55355942-55355961 | Msa0819210:intron | 30.0% |
| !!! | TGGTTGTTTTTATGCATAGT+GGG | - | chr5_3:55355943-55355962 | Msa0819210:intron | 30.0% |
| ! | TTAGTATTGTGTTACTCATG+TGG | - | chr5_3:55356038-55356057 | Msa0819210:intron | 30.0% |
| TTTAATGTGATCACATGTGT+TGG | - | chr5_3:55356152-55356171 | Msa0819210:intron | 30.0% | |
| GAGATCTTAATATGAATCAG+GGG | - | chr5_3:55356235-55356254 | Msa0819210:intron | 30.0% | |
| ! | GATTTTCATGCCTAACATAA+TGG | - | chr5_3:55356294-55356313 | Msa0819210:intron | 30.0% |
| ! | TTGAATGTAATCAGAAGTGT+CGG | + | chr5_3:55356757-55356776 | None:intergenic | 30.0% |
| CATAGGTAGTAAAAACAGAT+AGG | + | chr5_3:55356871-55356890 | None:intergenic | 30.0% | |
| ! | CTTATGTCATAGGATGTTTT+TGG | - | chr5_3:55356962-55356981 | Msa0819210:intron | 30.0% |
| !! | TGAATCCTTTAAGACATATG+AGG | + | chr5_3:55357117-55357136 | None:intergenic | 30.0% |
| !! | TAACTCTTGATTATTTCTGC+AGG | - | chr5_3:55357181-55357200 | Msa0819210:CDS | 30.0% |
| CACTGAATGTTCTATTGAAA+TGG | + | chr5_3:55357266-55357285 | None:intergenic | 30.0% | |
| AGGAGGAAAAAGTTTAGATA+AGG | - | chr5_3:55357415-55357434 | Msa0819210:exon | 30.0% | |
| ! | GAGAATGAGAAGGTTTTTGT+TGG | + | chr5_3:55355384-55355403 | None:intergenic | 35.0% |
| ATTCTCAATTCACGCGAAAA+TGG | - | chr5_3:55355434-55355453 | Msa0819210:three_prime_UTR | 35.0% | |
| GATCTCAAATCAAATTGACG+AGG | + | chr5_3:55356221-55356240 | None:intergenic | 35.0% | |
| !!! | AATCAGGGGATTTTTGAAGT+GGG | - | chr5_3:55356249-55356268 | Msa0819210:intron | 35.0% |
| !! | ATTGGTGATTTTCTCTGCAT+TGG | - | chr5_3:55356419-55356438 | Msa0819210:intron | 35.0% |
| ACTGTCAATTTGTGATGCTA+CGG | + | chr5_3:55356497-55356516 | None:intergenic | 35.0% | |
| ACAAAAGACACAACACTGAA+TGG | + | chr5_3:55356785-55356804 | None:intergenic | 35.0% | |
| ATGAACAACTCAAACTGACA+TGG | + | chr5_3:55356808-55356827 | None:intergenic | 35.0% | |
| GATTGTTCTTTCCATTGAGT+TGG | - | chr5_3:55357062-55357081 | Msa0819210:intron | 35.0% | |
| AACTGCCTCATATGTCTTAA+AGG | - | chr5_3:55357109-55357128 | Msa0819210:intron | 35.0% | |
| !! | TGATTATTTCTGCAGGATGA+CGG | - | chr5_3:55357188-55357207 | Msa0819210:CDS | 35.0% |
| ! | GAGAATGAGAAGGTTTTTGT+TGG | + | chr5_3:55355384-55355403 | None:intergenic | 35.0% |
| ATTCTCAATTCACGCGAAAA+TGG | - | chr5_3:55355434-55355453 | Msa0819210:three_prime_UTR | 35.0% | |
| GATCTCAAATCAAATTGACG+AGG | + | chr5_3:55356221-55356240 | None:intergenic | 35.0% | |
| !!! | AATCAGGGGATTTTTGAAGT+GGG | - | chr5_3:55356249-55356268 | Msa0819210:intron | 35.0% |
| !! | ATTGGTGATTTTCTCTGCAT+TGG | - | chr5_3:55356419-55356438 | Msa0819210:intron | 35.0% |
| ACTGTCAATTTGTGATGCTA+CGG | + | chr5_3:55356497-55356516 | None:intergenic | 35.0% | |
| ACAAAAGACACAACACTGAA+TGG | + | chr5_3:55356785-55356804 | None:intergenic | 35.0% | |
| ATGAACAACTCAAACTGACA+TGG | + | chr5_3:55356808-55356827 | None:intergenic | 35.0% | |
| GATTGTTCTTTCCATTGAGT+TGG | - | chr5_3:55357062-55357081 | Msa0819210:intron | 35.0% | |
| AACTGCCTCATATGTCTTAA+AGG | - | chr5_3:55357109-55357128 | Msa0819210:intron | 35.0% | |
| !! | TGATTATTTCTGCAGGATGA+CGG | - | chr5_3:55357188-55357207 | Msa0819210:CDS | 35.0% |
| !! | GAGAAGGTTTTTGTTGGTGA+AGG | + | chr5_3:55355378-55355397 | None:intergenic | 40.0% |
| CCAACGATGATGTTGTTGAT+TGG | + | chr5_3:55355723-55355742 | None:intergenic | 40.0% | |
| CCAATCAACAACATCATCGT+TGG | - | chr5_3:55355720-55355739 | Msa0819210:intron | 40.0% | |
| AACAACATCATCGTTGGATC+TGG | - | chr5_3:55355726-55355745 | Msa0819210:intron | 40.0% | |
| !! | TTTGAAGGGGGTATTCTGTT+TGG | - | chr5_3:55355923-55355942 | Msa0819210:intron | 40.0% |
| !!! | GCATAGTGGGTTTTAGTTGT+TGG | - | chr5_3:55355956-55355975 | Msa0819210:intron | 40.0% |
| !!! | TAGTGGGTTTTAGTTGTTGG+AGG | - | chr5_3:55355959-55355978 | Msa0819210:intron | 40.0% |
| ! | TGCATGTTTGCTACAATGCA+TGG | - | chr5_3:55356013-55356032 | Msa0819210:intron | 40.0% |
| !! | TCCGTTAGAAGTGTTAGTGT+CGG | - | chr5_3:55356190-55356209 | Msa0819210:intron | 40.0% |
| ACCGACACTAACACTTCTAA+CGG | + | chr5_3:55356194-55356213 | None:intergenic | 40.0% | |
| !! | GAATCAGGGGATTTTTGAAG+TGG | - | chr5_3:55356248-55356267 | Msa0819210:intron | 40.0% |
| ! | TTTGAAGTGGGTGATCTGTT+TGG | - | chr5_3:55356261-55356280 | Msa0819210:intron | 40.0% |
| !!! | GATTTTCTCTGCATTGGTTG+TGG | - | chr5_3:55356425-55356444 | Msa0819210:intron | 40.0% |
| CTTCACAGAAATAGTTCCAC+GGG | + | chr5_3:55356904-55356923 | None:intergenic | 40.0% | |
| GCTTCACAGAAATAGTTCCA+CGG | + | chr5_3:55356905-55356924 | None:intergenic | 40.0% | |
| !! | GTGGAACTATTTCTGTGAAG+CGG | - | chr5_3:55356904-55356923 | Msa0819210:intron | 40.0% |
| GCTGTAGCAACTTATGTCAT+AGG | - | chr5_3:55356952-55356971 | Msa0819210:intron | 40.0% | |
| AATCACAGCAACCAACTCAA+TGG | + | chr5_3:55357076-55357095 | None:intergenic | 40.0% | |
| !! | GATTATTTCTGCAGGATGAC+GGG | - | chr5_3:55357189-55357208 | Msa0819210:CDS | 40.0% |
| !! | GAGAAGGTTTTTGTTGGTGA+AGG | + | chr5_3:55355378-55355397 | None:intergenic | 40.0% |
| CCAACGATGATGTTGTTGAT+TGG | + | chr5_3:55355723-55355742 | None:intergenic | 40.0% | |
| CCAATCAACAACATCATCGT+TGG | - | chr5_3:55355720-55355739 | Msa0819210:intron | 40.0% | |
| AACAACATCATCGTTGGATC+TGG | - | chr5_3:55355726-55355745 | Msa0819210:intron | 40.0% | |
| !! | TTTGAAGGGGGTATTCTGTT+TGG | - | chr5_3:55355923-55355942 | Msa0819210:intron | 40.0% |
| !!! | GCATAGTGGGTTTTAGTTGT+TGG | - | chr5_3:55355956-55355975 | Msa0819210:intron | 40.0% |
| !!! | TAGTGGGTTTTAGTTGTTGG+AGG | - | chr5_3:55355959-55355978 | Msa0819210:intron | 40.0% |
| ! | TGCATGTTTGCTACAATGCA+TGG | - | chr5_3:55356013-55356032 | Msa0819210:intron | 40.0% |
| !! | TCCGTTAGAAGTGTTAGTGT+CGG | - | chr5_3:55356190-55356209 | Msa0819210:intron | 40.0% |
| ACCGACACTAACACTTCTAA+CGG | + | chr5_3:55356194-55356213 | None:intergenic | 40.0% | |
| !! | GAATCAGGGGATTTTTGAAG+TGG | - | chr5_3:55356248-55356267 | Msa0819210:intron | 40.0% |
| ! | TTTGAAGTGGGTGATCTGTT+TGG | - | chr5_3:55356261-55356280 | Msa0819210:intron | 40.0% |
| !!! | GATTTTCTCTGCATTGGTTG+TGG | - | chr5_3:55356425-55356444 | Msa0819210:intron | 40.0% |
| CTTCACAGAAATAGTTCCAC+GGG | + | chr5_3:55356904-55356923 | None:intergenic | 40.0% | |
| GCTTCACAGAAATAGTTCCA+CGG | + | chr5_3:55356905-55356924 | None:intergenic | 40.0% | |
| !! | GTGGAACTATTTCTGTGAAG+CGG | - | chr5_3:55356904-55356923 | Msa0819210:intron | 40.0% |
| GCTGTAGCAACTTATGTCAT+AGG | - | chr5_3:55356952-55356971 | Msa0819210:intron | 40.0% | |
| AATCACAGCAACCAACTCAA+TGG | + | chr5_3:55357076-55357095 | None:intergenic | 40.0% | |
| !! | GATTATTTCTGCAGGATGAC+GGG | - | chr5_3:55357189-55357208 | Msa0819210:CDS | 40.0% |
| GGTGAAGGAAGCAGATGAAT+TGG | + | chr5_3:55355363-55355382 | None:intergenic | 45.0% | |
| TGGATCGAAGACGGAATCAA+TGG | + | chr5_3:55355463-55355482 | None:intergenic | 45.0% | |
| TTCTCTGAGTGGATCGAAGA+CGG | + | chr5_3:55355472-55355491 | None:intergenic | 45.0% | |
| TCTTTGGCGAATTCTCTGAG+TGG | + | chr5_3:55355483-55355502 | None:intergenic | 45.0% | |
| AATTCGCCAAAGACAGCGTT+AGG | - | chr5_3:55355490-55355509 | Msa0819210:three_prime_UTR | 45.0% | |
| AGGGGTTATACCTTTGCGAT+CGG | + | chr5_3:55355538-55355557 | None:intergenic | 45.0% | |
| CATCACAACGAAACCAATCG+CGG | + | chr5_3:55355664-55355683 | None:intergenic | 45.0% | |
| !! | GCGATTGGTTTCGTTGTGAT+GGG | - | chr5_3:55355663-55355682 | Msa0819210:intron | 45.0% |
| ! | TTCGTTGTGATGGGATTCGT+TGG | - | chr5_3:55355672-55355691 | Msa0819210:intron | 45.0% |
| ! | TCGTTGTGATGGGATTCGTT+GGG | - | chr5_3:55355673-55355692 | Msa0819210:intron | 45.0% |
| CATCATCGTTGGATCTGGTT+AGG | - | chr5_3:55355731-55355750 | Msa0819210:intron | 45.0% | |
| CTTCTAACGGAAGATGTGTC+TGG | + | chr5_3:55356181-55356200 | None:intergenic | 45.0% | |
| ! | GACTTTTGACCTGTTGCTCA+AGG | - | chr5_3:55357395-55357414 | Msa0819210:CDS | 45.0% |
| ! | TTTTGACCTGTTGCTCAAGG+AGG | - | chr5_3:55357398-55357417 | Msa0819210:exon | 45.0% |
| ! | CTTTTTCCTCCTTGAGCAAC+AGG | + | chr5_3:55357407-55357426 | None:intergenic | 45.0% |
| GGTGAAGGAAGCAGATGAAT+TGG | + | chr5_3:55355363-55355382 | None:intergenic | 45.0% | |
| TGGATCGAAGACGGAATCAA+TGG | + | chr5_3:55355463-55355482 | None:intergenic | 45.0% | |
| TTCTCTGAGTGGATCGAAGA+CGG | + | chr5_3:55355472-55355491 | None:intergenic | 45.0% | |
| TCTTTGGCGAATTCTCTGAG+TGG | + | chr5_3:55355483-55355502 | None:intergenic | 45.0% | |
| AATTCGCCAAAGACAGCGTT+AGG | - | chr5_3:55355490-55355509 | Msa0819210:three_prime_UTR | 45.0% | |
| AGGGGTTATACCTTTGCGAT+CGG | + | chr5_3:55355538-55355557 | None:intergenic | 45.0% | |
| CATCACAACGAAACCAATCG+CGG | + | chr5_3:55355664-55355683 | None:intergenic | 45.0% | |
| !! | GCGATTGGTTTCGTTGTGAT+GGG | - | chr5_3:55355663-55355682 | Msa0819210:intron | 45.0% |
| ! | TTCGTTGTGATGGGATTCGT+TGG | - | chr5_3:55355672-55355691 | Msa0819210:intron | 45.0% |
| ! | TCGTTGTGATGGGATTCGTT+GGG | - | chr5_3:55355673-55355692 | Msa0819210:intron | 45.0% |
| CATCATCGTTGGATCTGGTT+AGG | - | chr5_3:55355731-55355750 | Msa0819210:intron | 45.0% | |
| CTTCTAACGGAAGATGTGTC+TGG | + | chr5_3:55356181-55356200 | None:intergenic | 45.0% | |
| ! | GACTTTTGACCTGTTGCTCA+AGG | - | chr5_3:55357395-55357414 | Msa0819210:CDS | 45.0% |
| ! | TTTTGACCTGTTGCTCAAGG+AGG | - | chr5_3:55357398-55357417 | Msa0819210:exon | 45.0% |
| ! | CTTTTTCCTCCTTGAGCAAC+AGG | + | chr5_3:55357407-55357426 | None:intergenic | 45.0% |
| AACGAGCCTAACGCTGTCTT+TGG | + | chr5_3:55355499-55355518 | None:intergenic | 50.0% | |
| TACCTTTGCGATCGGGTTTG+TGG | + | chr5_3:55355530-55355549 | None:intergenic | 50.0% | |
| GGGGTTATACCTTTGCGATC+GGG | + | chr5_3:55355537-55355556 | None:intergenic | 50.0% | |
| !! | CGCGATTGGTTTCGTTGTGA+TGG | - | chr5_3:55355662-55355681 | Msa0819210:intron | 50.0% |
| ATAGTTCCACGGGCTCTTGA+GGG | + | chr5_3:55356894-55356913 | None:intergenic | 50.0% | |
| AATAGTTCCACGGGCTCTTG+AGG | + | chr5_3:55356895-55356914 | None:intergenic | 50.0% | |
| TGCTGTGATTGATTGCCGAG+CGG | - | chr5_3:55357086-55357105 | Msa0819210:intron | 50.0% | |
| ACATATGAGGCAGTTCCGCT+CGG | + | chr5_3:55357104-55357123 | None:intergenic | 50.0% | |
| ACGGGAATTACAATCGCCTC+AGG | - | chr5_3:55357207-55357226 | Msa0819210:CDS | 50.0% | |
| CCTGCTTCACAACTTTCCTG+AGG | + | chr5_3:55357226-55357245 | None:intergenic | 50.0% | |
| CCTCAGGAAAGTTGTGAAGC+AGG | - | chr5_3:55357223-55357242 | Msa0819210:intron | 50.0% | |
| CAGGAAAGTTGTGAAGCAGG+AGG | - | chr5_3:55357226-55357245 | Msa0819210:intron | 50.0% | |
| GAAAGTTGTGAAGCAGGAGG+AGG | - | chr5_3:55357229-55357248 | Msa0819210:intron | 50.0% | |
| AACGAGCCTAACGCTGTCTT+TGG | + | chr5_3:55355499-55355518 | None:intergenic | 50.0% | |
| TACCTTTGCGATCGGGTTTG+TGG | + | chr5_3:55355530-55355549 | None:intergenic | 50.0% | |
| GGGGTTATACCTTTGCGATC+GGG | + | chr5_3:55355537-55355556 | None:intergenic | 50.0% | |
| !! | CGCGATTGGTTTCGTTGTGA+TGG | - | chr5_3:55355662-55355681 | Msa0819210:intron | 50.0% |
| ATAGTTCCACGGGCTCTTGA+GGG | + | chr5_3:55356894-55356913 | None:intergenic | 50.0% | |
| AATAGTTCCACGGGCTCTTG+AGG | + | chr5_3:55356895-55356914 | None:intergenic | 50.0% | |
| TGCTGTGATTGATTGCCGAG+CGG | - | chr5_3:55357086-55357105 | Msa0819210:intron | 50.0% | |
| ACATATGAGGCAGTTCCGCT+CGG | + | chr5_3:55357104-55357123 | None:intergenic | 50.0% | |
| ACGGGAATTACAATCGCCTC+AGG | - | chr5_3:55357207-55357226 | Msa0819210:CDS | 50.0% | |
| CCTGCTTCACAACTTTCCTG+AGG | + | chr5_3:55357226-55357245 | None:intergenic | 50.0% | |
| CCTCAGGAAAGTTGTGAAGC+AGG | - | chr5_3:55357223-55357242 | Msa0819210:intron | 50.0% | |
| CAGGAAAGTTGTGAAGCAGG+AGG | - | chr5_3:55357226-55357245 | Msa0819210:intron | 50.0% | |
| GAAAGTTGTGAAGCAGGAGG+AGG | - | chr5_3:55357229-55357248 | Msa0819210:intron | 50.0% | |
| TGCCACAAACCCGATCGCAA+AGG | - | chr5_3:55355525-55355544 | Msa0819210:three_prime_UTR | 55.0% | |
| ! | GTTGCTGTTCGTACCGCGAT+TGG | - | chr5_3:55355648-55355667 | Msa0819210:intron | 55.0% |
| TGCCACAAACCCGATCGCAA+AGG | - | chr5_3:55355525-55355544 | Msa0819210:three_prime_UTR | 55.0% | |
| ! | GTTGCTGTTCGTACCGCGAT+TGG | - | chr5_3:55355648-55355667 | Msa0819210:intron | 55.0% |
| CGCGGTACGAACAGCAACCT+TGG | + | chr5_3:55355646-55355665 | None:intergenic | 60.0% | |
| CGCGGTACGAACAGCAACCT+TGG | + | chr5_3:55355646-55355665 | None:intergenic | 60.0% | |
| ! | CCACGGGCTCTTGAGGGCAT+AGG | + | chr5_3:55356888-55356907 | None:intergenic | 65.0% |
| CCTATGCCCTCAAGAGCCCG+TGG | - | chr5_3:55356885-55356904 | Msa0819210:intron | 65.0% | |
| ! | CCACGGGCTCTTGAGGGCAT+AGG | + | chr5_3:55356888-55356907 | None:intergenic | 65.0% |
| CCTATGCCCTCAAGAGCCCG+TGG | - | chr5_3:55356885-55356904 | Msa0819210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55355348 | 55357521 | 55355348 | ID=Msa0819210;Name=Msa0819210 |
| chr5_3 | mRNA | 55355348 | 55357521 | 55355348 | ID=Msa0819210-mRNA-1;Parent=Msa0819210;Name=Msa0819210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=105|1|1|1|0.5|1|3|319|69 |
| chr5_3 | exon | 55355348 | 55355666 | 55355348 | ID=Msa0819210-mRNA-1:exon:16818;Parent=Msa0819210-mRNA-1 |
| chr5_3 | exon | 55357117 | 55357232 | 55357117 | ID=Msa0819210-mRNA-1:exon:16817;Parent=Msa0819210-mRNA-1 |
| chr5_3 | exon | 55357323 | 55357521 | 55357323 | ID=Msa0819210-mRNA-1:exon:16816;Parent=Msa0819210-mRNA-1 |
| chr5_3 | five_prime_UTR | 55357417 | 55357521 | 55357417 | ID=Msa0819210-mRNA-1:five_prime_utr;Parent=Msa0819210-mRNA-1 |
| chr5_3 | CDS | 55357323 | 55357416 | 55357323 | ID=Msa0819210-mRNA-1:cds;Parent=Msa0819210-mRNA-1 |
| chr5_3 | CDS | 55357117 | 55357232 | 55357117 | ID=Msa0819210-mRNA-1:cds;Parent=Msa0819210-mRNA-1 |
| chr5_3 | three_prime_UTR | 55355348 | 55355666 | 55355348 | ID=Msa0819210-mRNA-1:three_prime_utr;Parent=Msa0819210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
