AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465260 MtrunA17_Chr8g0380181 100.000 155 0 0 1 155 1 155 4.41e-114 319
Msa1465260 MtrunA17_Chr5g0413361 99.355 155 1 0 1 155 1 155 1.70e-113 318
Msa1465260 MtrunA17_Chr6g0475951 100.000 76 0 0 1 76 1 76 2.84e-50 155
Msa1465260 MtrunA17_Chr7g0266661 100.000 76 0 0 1 76 1 76 1.38e-49 155
Msa1465260 MtrunA17_Chr1g0178381 100.000 76 0 0 1 76 1 76 1.38e-49 155
Msa1465260 MtrunA17_Chr3g0127481 100.000 76 0 0 1 76 1 76 1.38e-49 155
Msa1465260 MtrunA17_Chr4g0037241 98.701 77 1 0 1 77 1 77 2.01e-49 155
Msa1465260 MtrunA17_Chr4g0037241 62.162 74 28 0 3 76 79 152 4.03e-26 96.7
Msa1465260 MtrunA17_Chr5g0444101 98.701 77 1 0 1 77 1 77 2.01e-49 155
Msa1465260 MtrunA17_Chr5g0444101 62.162 74 28 0 3 76 79 152 4.03e-26 96.7
Msa1465260 MtrunA17_Chr6g0475961 97.436 78 2 0 1 78 4 81 2.87e-49 157
Msa1465260 MtrunA17_Chr6g0475961 97.436 78 2 0 1 78 80 157 2.87e-49 157
Msa1465260 MtrunA17_Chr6g0475961 100.000 37 0 0 1 37 156 192 1.14e-17 75.9
Msa1465260 MtrunA17_Chr7g0274921 97.436 78 2 0 1 78 3 80 1.20e-48 156
Msa1465260 MtrunA17_Chr7g0274921 97.436 78 2 0 1 78 79 156 1.20e-48 156
Msa1465260 MtrunA17_Chr7g0274921 100.000 76 0 0 1 76 155 230 1.41e-48 156
Msa1465260 MtrunA17_Chr1g0181441 98.701 77 1 0 1 77 153 229 1.77e-48 156
Msa1465260 MtrunA17_Chr1g0181441 97.436 78 2 0 1 78 1 78 1.89e-48 156
Msa1465260 MtrunA17_Chr1g0181441 97.436 78 2 0 1 78 77 154 1.89e-48 156
Msa1465260 MtrunA17_Chr4g0041751 96.154 78 3 0 1 78 77 154 4.60e-48 155
Msa1465260 MtrunA17_Chr4g0041751 96.154 78 3 0 1 78 1 78 6.73e-48 154
Msa1465260 MtrunA17_Chr4g0041751 68.831 77 24 0 1 77 153 229 1.63e-29 107
Msa1465260 MtrunA17_Chr8g0377821 97.436 78 2 0 1 78 9 86 8.24e-47 156
Msa1465260 MtrunA17_Chr8g0377821 97.436 78 2 0 1 78 85 162 8.24e-47 156
Msa1465260 MtrunA17_Chr8g0377821 97.436 78 2 0 1 78 161 238 8.24e-47 156
Msa1465260 MtrunA17_Chr8g0377821 97.436 78 2 0 1 78 237 314 8.24e-47 156
Msa1465260 MtrunA17_Chr8g0377821 100.000 76 0 0 1 76 313 388 9.77e-47 156
Msa1465260 MtrunA17_Chr4g0046801 97.436 78 2 0 1 78 4 81 2.13e-46 156
Msa1465260 MtrunA17_Chr4g0046801 97.436 78 2 0 1 78 80 157 2.13e-46 156
Msa1465260 MtrunA17_Chr4g0046801 97.436 78 2 0 1 78 156 233 2.13e-46 156
Msa1465260 MtrunA17_Chr4g0046801 97.436 78 2 0 1 78 232 309 2.13e-46 156
Msa1465260 MtrunA17_Chr4g0046801 97.436 78 2 0 1 78 308 385 2.13e-46 156
Msa1465260 MtrunA17_Chr4g0046801 100.000 76 0 0 1 76 384 459 2.50e-46 156
Msa1465260 MtrunA17_Chr4g0041641 97.436 78 2 0 1 78 5 82 2.51e-46 156
Msa1465260 MtrunA17_Chr4g0041641 97.436 78 2 0 1 78 81 158 2.51e-46 156
Msa1465260 MtrunA17_Chr4g0041641 97.436 78 2 0 1 78 157 234 2.51e-46 156
Msa1465260 MtrunA17_Chr4g0041641 97.436 78 2 0 1 78 233 310 2.51e-46 156
Msa1465260 MtrunA17_Chr4g0041641 97.436 78 2 0 1 78 309 386 2.51e-46 156
Msa1465260 MtrunA17_Chr4g0041641 100.000 76 0 0 1 76 385 460 2.98e-46 156
Msa1465260 MtrunA17_Chr8g0374171 94.872 78 4 0 1 78 74 151 4.94e-46 147
Msa1465260 MtrunA17_Chr8g0374171 88.889 36 4 0 43 78 40 75 6.43e-15 68.2
Msa1465260 MtrunA17_Chr8g0342711 97.436 78 2 0 1 78 4 81 7.09e-46 156
Msa1465260 MtrunA17_Chr8g0342711 97.436 78 2 0 1 78 80 157 7.09e-46 156
Msa1465260 MtrunA17_Chr8g0342711 97.436 78 2 0 1 78 156 233 7.09e-46 156
Msa1465260 MtrunA17_Chr8g0342711 97.436 78 2 0 1 78 232 309 7.09e-46 156
Msa1465260 MtrunA17_Chr8g0342711 97.436 78 2 0 1 78 308 385 7.09e-46 156
Msa1465260 MtrunA17_Chr8g0342711 97.436 78 2 0 1 78 384 461 7.09e-46 156
Msa1465260 MtrunA17_Chr8g0342711 100.000 76 0 0 1 76 460 535 8.20e-46 156
Msa1465260 MtrunA17_Chr4g0048591 97.436 78 2 0 1 78 4 81 7.47e-46 156
Msa1465260 MtrunA17_Chr4g0048591 97.436 78 2 0 1 78 80 157 7.47e-46 156
Msa1465260 MtrunA17_Chr4g0048591 97.436 78 2 0 1 78 156 233 7.47e-46 156
Msa1465260 MtrunA17_Chr4g0048591 97.436 78 2 0 1 78 232 309 7.47e-46 156
Msa1465260 MtrunA17_Chr4g0048591 97.436 78 2 0 1 78 384 461 7.47e-46 156
Msa1465260 MtrunA17_Chr4g0048591 100.000 76 0 0 1 76 460 535 8.64e-46 156
Msa1465260 MtrunA17_Chr4g0048591 94.872 78 4 0 1 78 308 385 2.47e-44 152
Msa1465260 MtrunA17_Chr4g0041701 97.436 78 2 0 1 78 1 78 7.55e-46 156
Msa1465260 MtrunA17_Chr4g0041701 97.436 78 2 0 1 78 77 154 7.55e-46 156
Msa1465260 MtrunA17_Chr4g0041701 97.436 78 2 0 1 78 153 230 7.55e-46 156
Msa1465260 MtrunA17_Chr4g0041701 97.436 78 2 0 1 78 229 306 7.55e-46 156
Msa1465260 MtrunA17_Chr4g0041701 97.436 78 2 0 1 78 305 382 7.55e-46 156
Msa1465260 MtrunA17_Chr4g0041701 97.436 78 2 0 1 78 381 458 7.55e-46 156
Msa1465260 MtrunA17_Chr4g0041701 100.000 76 0 0 1 76 457 532 8.73e-46 156
Msa1465260 MtrunA17_Chr4g0046831 97.436 78 2 0 1 78 80 157 1.54e-45 156
Msa1465260 MtrunA17_Chr4g0046831 97.436 78 2 0 1 78 156 233 1.54e-45 156
Msa1465260 MtrunA17_Chr4g0046831 97.436 78 2 0 1 78 232 309 1.54e-45 156
Msa1465260 MtrunA17_Chr4g0046831 97.436 78 2 0 1 78 368 445 1.54e-45 156
Msa1465260 MtrunA17_Chr4g0046831 97.436 78 2 0 1 78 444 521 1.54e-45 156
Msa1465260 MtrunA17_Chr4g0046831 100.000 76 0 0 1 76 520 595 1.81e-45 156
Msa1465260 MtrunA17_Chr4g0046831 96.154 78 3 0 1 78 4 81 3.33e-44 153
Msa1465260 MtrunA17_Chr4g0046831 76.923 78 2 1 1 78 308 369 8.81e-30 113
Msa1465260 MtrunA17_Chr1g0169371 71.053 76 22 0 1 76 215 290 2.17e-28 105
Msa1465260 MtrunA17_Chr5g0433721 68.831 77 23 1 1 76 194 270 9.67e-28 103
Msa1465260 MtrunA17_Chr5g0433631 69.863 73 22 0 1 73 266 338 6.50e-27 103
Msa1465260 MtrunA17_Chr5g0428191 68.421 76 24 0 1 76 241 316 1.34e-25 99.4
Msa1465260 MtrunA17_Chr5g0424981 60.000 75 30 0 1 75 2 76 8.76e-25 90.9
Msa1465260 MtrunA17_Chr8g0374161 100.000 44 0 0 1 44 9 52 1.01e-24 90.1
Msa1465260 MtrunA17_Chr2g0298951 61.333 75 29 0 1 75 236 310 4.08e-23 92.4
Msa1465260 MtrunA17_Chr5g0433411 64.384 73 26 0 1 73 267 339 6.33e-23 92.4
Msa1465260 MtrunA17_Chr5g0433521 61.333 75 29 0 1 75 240 314 6.59e-23 92.0
Msa1465260 MtrunA17_Chr5g0433681 59.211 76 30 1 1 75 1 76 1.59e-22 85.1
Msa1465260 MtrunA17_Chr5g0433661 65.333 75 26 0 1 75 278 352 2.12e-22 91.3
Msa1465260 MtrunA17_Chr7g0259431 58.667 75 31 0 1 75 223 297 9.33e-22 88.6
Msa1465260 MtrunA17_Chr2g0298941 60.000 75 30 0 1 75 177 251 1.20e-21 87.4
Msa1465260 MtrunA17_Chr1g0169401 60.000 70 28 0 7 76 2 71 4.96e-21 81.3
Msa1465260 MtrunA17_Chr4g0003111 53.333 75 35 0 1 75 4 78 2.76e-20 79.7
Msa1465260 MtrunA17_Chr5g0433531 57.333 75 31 1 1 74 244 318 7.83e-19 81.3
Msa1465260 MtrunA17_Chr5g0433701 58.824 68 27 1 1 67 1 68 1.51e-18 75.5
Msa1465260 MtrunA17_Chr7g0223111 60.526 76 29 1 1 75 267 342 1.95e-18 80.1
Msa1465260 MtrunA17_Chr5g0424971 53.333 75 35 0 1 75 252 326 1.17e-17 77.8
Msa1465260 MtrunA17_Chr1g0212981 58.065 62 22 2 45 106 17 74 2.26e-16 69.3
Msa1465260 MtrunA17_Chr5g0433391 48.684 76 38 1 1 75 8 83 2.79e-15 67.0
Msa1465260 MtrunA17_Chr5g0433711 58.333 60 25 0 15 74 4 63 6.30e-15 65.5
Msa1465260 MtrunA17_Chr5g0433381 50.649 77 36 2 1 75 9 85 1.72e-14 64.7
Msa1465260 MtrunA17_Chr4g0041621 74.286 35 9 0 44 78 11 45 8.18e-12 57.4
Msa1465260 MtrunA17_Chr2g0292351 49.206 63 29 1 45 107 17 76 2.66e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465260 AT2G47110.2 96.129 155 6 0 1 155 1 155 1.93e-108 305
Msa1465260 AT2G47110.1 96.129 155 6 0 1 155 1 155 1.93e-108 305
Msa1465260 AT3G62250.1 96.711 152 5 0 1 152 1 152 4.50e-108 305
Msa1465260 AT1G23410.1 91.558 154 13 0 1 154 1 154 2.65e-91 262
Msa1465260 AT2G36170.1 100.000 76 0 0 1 76 1 76 1.83e-49 155
Msa1465260 AT3G52590.1 100.000 76 0 0 1 76 1 76 1.83e-49 155
Msa1465260 AT4G05320.7 97.436 78 2 0 1 78 1 78 2.23e-49 156
Msa1465260 AT4G05320.7 100.000 76 0 0 1 76 77 152 2.62e-49 155
Msa1465260 AT4G05050.4 97.436 78 2 0 1 78 1 78 2.23e-49 156
Msa1465260 AT4G05050.4 100.000 76 0 0 1 76 77 152 2.62e-49 155
Msa1465260 AT2G35635.1 98.701 77 1 0 1 77 1 77 2.77e-49 155
Msa1465260 AT2G35635.1 62.162 74 28 0 3 76 79 152 1.74e-25 95.5
Msa1465260 AT1G31340.1 98.701 77 1 0 1 77 1 77 4.17e-49 155
Msa1465260 AT1G31340.1 63.514 74 27 0 3 76 79 152 1.49e-26 98.2
Msa1465260 AT4G02890.2 97.436 78 2 0 1 78 1 78 1.78e-48 156
Msa1465260 AT4G02890.2 97.436 78 2 0 1 78 77 154 1.78e-48 156
Msa1465260 AT4G02890.2 100.000 76 0 0 1 76 153 228 2.09e-48 156
Msa1465260 AT4G02890.1 97.436 78 2 0 1 78 1 78 1.78e-48 156
Msa1465260 AT4G02890.1 97.436 78 2 0 1 78 77 154 1.78e-48 156
Msa1465260 AT4G02890.1 100.000 76 0 0 1 76 153 228 2.09e-48 156
Msa1465260 AT4G05050.2 97.436 78 2 0 1 78 1 78 1.78e-48 156
Msa1465260 AT4G05050.2 97.436 78 2 0 1 78 77 154 1.78e-48 156
Msa1465260 AT4G05050.2 100.000 76 0 0 1 76 153 228 2.09e-48 156
Msa1465260 AT4G05050.1 97.436 78 2 0 1 78 1 78 1.78e-48 156
Msa1465260 AT4G05050.1 97.436 78 2 0 1 78 77 154 1.78e-48 156
Msa1465260 AT4G05050.1 100.000 76 0 0 1 76 153 228 2.09e-48 156
Msa1465260 AT4G05050.3 97.436 78 2 0 1 78 1 78 1.78e-48 156
Msa1465260 AT4G05050.3 97.436 78 2 0 1 78 77 154 1.78e-48 156
Msa1465260 AT4G05050.3 100.000 76 0 0 1 76 153 228 2.09e-48 156
Msa1465260 AT1G55060.1 96.154 78 3 0 1 78 77 154 6.74e-48 155
Msa1465260 AT1G55060.1 96.104 77 3 0 1 77 153 229 5.97e-46 150
Msa1465260 AT1G55060.1 84.615 78 12 0 1 78 1 78 1.18e-41 139
Msa1465260 AT5G03240.3 98.701 77 1 0 1 77 229 305 8.41e-48 157
Msa1465260 AT5G03240.3 97.436 78 2 0 1 78 1 78 1.31e-47 156
Msa1465260 AT5G03240.3 97.436 78 2 0 1 78 77 154 1.31e-47 156
Msa1465260 AT5G03240.3 97.436 78 2 0 1 78 153 230 1.31e-47 156
Msa1465260 AT5G03240.2 98.701 77 1 0 1 77 229 305 8.41e-48 157
Msa1465260 AT5G03240.2 97.436 78 2 0 1 78 1 78 1.31e-47 156
Msa1465260 AT5G03240.2 97.436 78 2 0 1 78 77 154 1.31e-47 156
Msa1465260 AT5G03240.2 97.436 78 2 0 1 78 153 230 1.31e-47 156
Msa1465260 AT5G03240.1 98.701 77 1 0 1 77 229 305 8.41e-48 157
Msa1465260 AT5G03240.1 97.436 78 2 0 1 78 1 78 1.31e-47 156
Msa1465260 AT5G03240.1 97.436 78 2 0 1 78 77 154 1.31e-47 156
Msa1465260 AT5G03240.1 97.436 78 2 0 1 78 153 230 1.31e-47 156
Msa1465260 AT5G20620.2 98.701 77 1 0 1 77 229 305 8.41e-48 157
Msa1465260 AT5G20620.2 97.436 78 2 0 1 78 1 78 1.31e-47 156
Msa1465260 AT5G20620.2 97.436 78 2 0 1 78 77 154 1.31e-47 156
Msa1465260 AT5G20620.2 97.436 78 2 0 1 78 153 230 1.31e-47 156
Msa1465260 AT4G05320.5 97.436 78 2 0 1 78 1 78 1.50e-47 156
Msa1465260 AT4G05320.5 97.436 78 2 0 1 78 77 154 1.50e-47 156
Msa1465260 AT4G05320.5 97.436 78 2 0 1 78 153 230 1.50e-47 156
Msa1465260 AT4G05320.5 100.000 76 0 0 1 76 229 304 1.76e-47 156
Msa1465260 AT4G05320.8 97.436 78 2 0 1 78 1 78 1.50e-47 156
Msa1465260 AT4G05320.8 97.436 78 2 0 1 78 77 154 1.50e-47 156
Msa1465260 AT4G05320.8 97.436 78 2 0 1 78 153 230 1.50e-47 156
Msa1465260 AT4G05320.8 100.000 76 0 0 1 76 229 304 1.76e-47 156
Msa1465260 AT4G02890.3 97.436 78 2 0 1 78 1 78 1.50e-47 156
Msa1465260 AT4G02890.3 97.436 78 2 0 1 78 77 154 1.50e-47 156
Msa1465260 AT4G02890.3 97.436 78 2 0 1 78 153 230 1.50e-47 156
Msa1465260 AT4G02890.3 100.000 76 0 0 1 76 229 304 1.76e-47 156
Msa1465260 AT4G02890.4 97.436 78 2 0 1 78 1 78 1.50e-47 156
Msa1465260 AT4G02890.4 97.436 78 2 0 1 78 77 154 1.50e-47 156
Msa1465260 AT4G02890.4 97.436 78 2 0 1 78 153 230 1.50e-47 156
Msa1465260 AT4G02890.4 100.000 76 0 0 1 76 229 304 1.76e-47 156
Msa1465260 AT1G65350.1 97.436 78 2 0 1 78 1 78 2.42e-47 156
Msa1465260 AT1G65350.1 96.154 78 3 0 1 78 152 229 3.37e-46 153
Msa1465260 AT1G65350.1 96.154 78 2 1 1 78 77 153 2.18e-44 148
Msa1465260 AT1G65350.1 79.121 91 5 1 1 77 228 318 1.09e-38 134
Msa1465260 AT5G20620.1 98.701 77 1 0 1 77 305 381 4.80e-47 157
Msa1465260 AT5G20620.1 97.436 78 2 0 1 78 1 78 7.43e-47 156
Msa1465260 AT5G20620.1 97.436 78 2 0 1 78 77 154 7.43e-47 156
Msa1465260 AT5G20620.1 97.436 78 2 0 1 78 153 230 7.43e-47 156
Msa1465260 AT5G20620.1 97.436 78 2 0 1 78 229 306 7.43e-47 156
Msa1465260 AT4G05320.1 97.436 78 2 0 1 78 1 78 8.01e-47 156
Msa1465260 AT4G05320.1 97.436 78 2 0 1 78 77 154 8.01e-47 156
Msa1465260 AT4G05320.1 97.436 78 2 0 1 78 153 230 8.01e-47 156
Msa1465260 AT4G05320.1 97.436 78 2 0 1 78 229 306 8.01e-47 156
Msa1465260 AT4G05320.1 100.000 76 0 0 1 76 305 380 9.30e-47 156
Msa1465260 AT4G05320.6 97.436 78 2 0 1 78 1 78 8.01e-47 156
Msa1465260 AT4G05320.6 97.436 78 2 0 1 78 77 154 8.01e-47 156
Msa1465260 AT4G05320.6 97.436 78 2 0 1 78 153 230 8.01e-47 156
Msa1465260 AT4G05320.6 97.436 78 2 0 1 78 229 306 8.01e-47 156
Msa1465260 AT4G05320.6 100.000 76 0 0 1 76 305 380 9.30e-47 156
Msa1465260 AT4G05320.3 97.436 78 2 0 1 78 1 78 8.01e-47 156
Msa1465260 AT4G05320.3 97.436 78 2 0 1 78 77 154 8.01e-47 156
Msa1465260 AT4G05320.3 97.436 78 2 0 1 78 153 230 8.01e-47 156
Msa1465260 AT4G05320.3 97.436 78 2 0 1 78 229 306 8.01e-47 156
Msa1465260 AT4G05320.3 100.000 76 0 0 1 76 305 380 9.30e-47 156
Msa1465260 AT5G37640.1 94.872 78 4 0 1 78 79 156 2.19e-46 154
Msa1465260 AT5G37640.1 91.026 78 7 0 1 78 155 232 2.28e-42 143
Msa1465260 AT5G37640.1 92.208 77 5 1 1 76 231 307 3.54e-40 137
Msa1465260 AT5G37640.1 76.923 78 18 0 1 78 3 80 1.20e-33 120
Msa1465260 AT4G05320.2 97.436 78 2 0 1 78 1 78 3.31e-46 156
Msa1465260 AT4G05320.2 97.436 78 2 0 1 78 77 154 3.31e-46 156
Msa1465260 AT4G05320.2 97.436 78 2 0 1 78 153 230 3.31e-46 156
Msa1465260 AT4G05320.2 97.436 78 2 0 1 78 229 306 3.31e-46 156
Msa1465260 AT4G05320.2 97.436 78 2 0 1 78 305 382 3.31e-46 156
Msa1465260 AT4G05320.2 100.000 76 0 0 1 76 381 456 3.83e-46 156
Msa1465260 AT4G05320.4 97.436 78 2 0 1 78 1 78 3.31e-46 156
Msa1465260 AT4G05320.4 97.436 78 2 0 1 78 77 154 3.31e-46 156
Msa1465260 AT4G05320.4 97.436 78 2 0 1 78 153 230 3.31e-46 156
Msa1465260 AT4G05320.4 97.436 78 2 0 1 78 229 306 3.31e-46 156
Msa1465260 AT4G05320.4 97.436 78 2 0 1 78 305 382 3.31e-46 156
Msa1465260 AT4G05320.4 100.000 76 0 0 1 76 381 456 3.83e-46 156
Msa1465260 AT3G09790.2 91.026 78 7 0 1 78 79 156 1.54e-39 140
Msa1465260 AT3G09790.2 83.333 78 13 0 1 78 3 80 4.79e-36 131
Msa1465260 AT3G09790.2 79.730 74 15 0 1 74 552 625 1.33e-30 116
Msa1465260 AT3G09790.2 69.231 78 24 0 1 78 393 470 9.97e-28 108
Msa1465260 AT3G09790.2 73.684 76 18 1 1 74 319 394 9.82e-27 105
Msa1465260 AT3G09790.2 68.675 83 21 1 1 78 238 320 4.61e-26 103
Msa1465260 AT3G09790.2 67.073 82 20 2 1 75 155 236 1.24e-25 102
Msa1465260 AT3G09790.2 64.706 85 23 1 1 78 469 553 1.24e-24 99.4
Msa1465260 AT3G09790.1 91.026 78 7 0 1 78 79 156 1.54e-39 140
Msa1465260 AT3G09790.1 83.333 78 13 0 1 78 3 80 4.79e-36 131
Msa1465260 AT3G09790.1 79.730 74 15 0 1 74 552 625 1.33e-30 116
Msa1465260 AT3G09790.1 69.231 78 24 0 1 78 393 470 9.97e-28 108
Msa1465260 AT3G09790.1 73.684 76 18 1 1 74 319 394 9.82e-27 105
Msa1465260 AT3G09790.1 68.675 83 21 1 1 78 238 320 4.61e-26 103
Msa1465260 AT3G09790.1 67.073 82 20 2 1 75 155 236 1.24e-25 102
Msa1465260 AT3G09790.1 64.706 85 23 1 1 78 469 553 1.24e-24 99.4
Msa1465260 AT1G53930.1 75.342 73 18 0 1 73 86 158 1.27e-32 114
Msa1465260 AT1G53950.1 61.972 71 27 0 1 71 69 139 1.28e-24 92.8
Msa1465260 AT1G11980.1 55.263 76 34 0 1 76 1 76 7.22e-24 89.0
Msa1465260 AT1G53945.1 44.286 70 39 0 1 70 46 115 2.23e-12 60.8
Msa1465260 AT5G42220.2 38.889 72 44 0 1 72 24 95 3.96e-12 63.5
Msa1465260 AT5G42220.1 38.889 72 44 0 1 72 24 95 3.96e-12 63.5
Msa1465260 AT4G12570.1 38.667 75 45 1 1 74 95 169 7.33e-12 62.8

Find 43 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTATCGTCTTCCCTGTT+AGG 0.275426 tig0045103:-1699 Msa1465260:intergenic
TCCTTCCTTATCCTGGATCT+TGG 0.283815 tig0045103:-1761 Msa1465260:intergenic
TGCTTGTGCTTGATCTTCTT+AGG 0.315697 tig0045103:-1940 Msa1465260:intergenic
ATCTTCGTGAAAACCCTAAC+AGG 0.342406 tig0045103:+1685 Msa1465260:CDS
GAATCTAAGCTTCAGCCTTC+TGG 0.355525 tig0045103:-2128 Msa1465260:intergenic
GGTGAAGAGTGGATTCCTTC+TGG 0.367185 tig0045103:-1861 Msa1465260:intergenic
TTCCTTCTGGATGTTGTAAT+CGG 0.389946 tig0045103:-1848 Msa1465260:intergenic
GTGCTTGATCTTCTTAGGCT+TGG 0.399157 tig0045103:-1935 Msa1465260:intergenic
CCAGCACCACACTCAGCATT+AGG 0.399166 tig0045103:-2042 Msa1465260:intergenic
AAGATGAGACGTTGCTGGTC+AGG 0.401920 tig0045103:-1790 Msa1465260:intergenic
GCCGTCTTCCAACTGCTTAC+CGG 0.409303 tig0045103:-1815 Msa1465260:intergenic
GTGGAATTCCTTCCTTATCC+TGG 0.410864 tig0045103:-1768 Msa1465260:intergenic
CACCTTGTTCTCCGTCTTCG+TGG 0.413158 tig0045103:+1880 Msa1465260:CDS
CCTAATGCTGAGTGTGGTGC+TGG 0.421706 tig0045103:+2042 Msa1465260:CDS
GGTTATCGTCTTCCCTGTTA+GGG 0.439791 tig0045103:-1698 Msa1465260:intergenic
CGGCGAAGATGAGACGTTGC+TGG 0.481917 tig0045103:-1795 Msa1465260:intergenic
GATCTTCTTAGGCTTGGTGT+AGG 0.499446 tig0045103:-1929 Msa1465260:intergenic
CAAAGCCAAGATCCAGGATA+AGG 0.503228 tig0045103:+1756 Msa1465260:CDS
TAAGGTTGATGATTCTGGTA+AGG 0.507107 tig0045103:+1996 Msa1465260:CDS
CTGGTAAGGTGCAGAGGTTG+AGG 0.530489 tig0045103:+2010 Msa1465260:CDS
CAACGTCAAAGCCAAGATCC+AGG 0.536628 tig0045103:+1750 Msa1465260:CDS
CACCACGAAGACGGAGAACA+AGG 0.547100 tig0045103:-1882 Msa1465260:intergenic
AGAAGATCAAGCACAAGCAT+AGG 0.547871 tig0045103:+1944 Msa1465260:CDS
CATCTTCGCCGGTAAGCAGT+TGG 0.562227 tig0045103:+1807 Msa1465260:CDS
GCCGGTAAGCAGTTGGAAGA+CGG 0.576011 tig0045103:+1814 Msa1465260:CDS
ATGAGACGTTGCTGGTCAGG+TGG 0.590188 tig0045103:-1787 Msa1465260:intergenic
ACGGAGAACAAGGTGAAGAG+TGG 0.590212 tig0045103:-1872 Msa1465260:intergenic
CAGCAACGTCTCATCTTCGC+CGG 0.594080 tig0045103:+1796 Msa1465260:CDS
TGTTGTAATCGGCGAGAGTG+CGG 0.600891 tig0045103:-1837 Msa1465260:intergenic
TGTCAGAAGACTCAACCTCA+AGG 0.602618 tig0045103:-1720 Msa1465260:intergenic
TTCAGCCTTCTGGTAAACAT+AGG 0.603941 tig0045103:-2118 Msa1465260:intergenic
GCCAAGATCCAGGATAAGGA+AGG 0.608413 tig0045103:+1760 Msa1465260:CDS
CTTGTTCTCCGTCTTCGTGG+TGG 0.619238 tig0045103:+1883 Msa1465260:CDS
GATCAAGCACAAGCATAGGA+AGG 0.622172 tig0045103:+1948 Msa1465260:CDS
ATGATTCTGGTAAGGTGCAG+AGG 0.622645 tig0045103:+2004 Msa1465260:CDS
GTCAGAAGACTCAACCTCAA+GGG 0.624869 tig0045103:-1719 Msa1465260:intergenic
TAAGGTGCAGAGGTTGAGGA+AGG 0.629109 tig0045103:+2014 Msa1465260:CDS
CGTCATTATTGTGGTAAGTG+TGG 0.634236 tig0045103:+2090 Msa1465260:CDS
CGCCGATTACAACATCCAGA+AGG 0.636889 tig0045103:+1846 Msa1465260:CDS
TCTTACCTATGTTTACCAGA+AGG 0.642596 tig0045103:+2113 Msa1465260:CDS
GAGTGTCCTAATGCTGAGTG+TGG 0.690300 tig0045103:+2036 Msa1465260:CDS
TCTTCGTGAAAACCCTAACA+GGG 0.705571 tig0045103:+1686 Msa1465260:CDS
AGGGAAGACGATAACCCTTG+AGG 0.708675 tig0045103:+1705 Msa1465260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAAGGTTGATGATTC+TGG + tig0045103:1991-2010 Msa1465260:CDS 25.0%
!! TGCTGTTCTTCAGTTTTATA+AGG + tig0045103:1978-1997 Msa1465260:CDS 30.0%
!! CATTTTGATCGTCATTATTG+TGG + tig0045103:2081-2100 Msa1465260:CDS 30.0%
TTCCTTCTGGATGTTGTAAT+CGG - tig0045103:1851-1870 Msa1465260:intergenic 35.0%
!! TAAGGTTGATGATTCTGGTA+AGG + tig0045103:1996-2015 Msa1465260:CDS 35.0%
TCTTACCTATGTTTACCAGA+AGG + tig0045103:2113-2132 Msa1465260:CDS 35.0%
ATCTTCGTGAAAACCCTAAC+AGG + tig0045103:1685-1704 Msa1465260:CDS 40.0%
TCTTCGTGAAAACCCTAACA+GGG + tig0045103:1686-1705 Msa1465260:CDS 40.0%
TGCTTGTGCTTGATCTTCTT+AGG - tig0045103:1943-1962 Msa1465260:intergenic 40.0%
AGAAGATCAAGCACAAGCAT+AGG + tig0045103:1944-1963 Msa1465260:CDS 40.0%
CGTCATTATTGTGGTAAGTG+TGG + tig0045103:2090-2109 Msa1465260:CDS 40.0%
TTCAGCCTTCTGGTAAACAT+AGG - tig0045103:2121-2140 Msa1465260:intergenic 40.0%
GGTTATCGTCTTCCCTGTTA+GGG - tig0045103:1701-1720 Msa1465260:intergenic 45.0%
GTCAGAAGACTCAACCTCAA+GGG - tig0045103:1722-1741 Msa1465260:intergenic 45.0%
TGTCAGAAGACTCAACCTCA+AGG - tig0045103:1723-1742 Msa1465260:intergenic 45.0%
CAAAGCCAAGATCCAGGATA+AGG + tig0045103:1756-1775 Msa1465260:CDS 45.0%
TCCTTCCTTATCCTGGATCT+TGG - tig0045103:1764-1783 Msa1465260:intergenic 45.0%
GTGGAATTCCTTCCTTATCC+TGG - tig0045103:1771-1790 Msa1465260:intergenic 45.0%
!! GATCTTCTTAGGCTTGGTGT+AGG - tig0045103:1932-1951 Msa1465260:intergenic 45.0%
GTGCTTGATCTTCTTAGGCT+TGG - tig0045103:1938-1957 Msa1465260:intergenic 45.0%
GATCAAGCACAAGCATAGGA+AGG + tig0045103:1948-1967 Msa1465260:CDS 45.0%
ATGATTCTGGTAAGGTGCAG+AGG + tig0045103:2004-2023 Msa1465260:CDS 45.0%
!! GTGTGGTGCTGGAACTTTTA+TGG + tig0045103:2053-2072 Msa1465260:CDS 45.0%
GGGTTATCGTCTTCCCTGTT+AGG - tig0045103:1702-1721 Msa1465260:intergenic 50.0%
AGGGAAGACGATAACCCTTG+AGG + tig0045103:1705-1724 Msa1465260:CDS 50.0%
CAACGTCAAAGCCAAGATCC+AGG + tig0045103:1750-1769 Msa1465260:CDS 50.0%
GCCAAGATCCAGGATAAGGA+AGG + tig0045103:1760-1779 Msa1465260:CDS 50.0%
AAGATGAGACGTTGCTGGTC+AGG - tig0045103:1793-1812 Msa1465260:intergenic 50.0%
TGTTGTAATCGGCGAGAGTG+CGG - tig0045103:1840-1859 Msa1465260:intergenic 50.0%
! CGCCGATTACAACATCCAGA+AGG + tig0045103:1846-1865 Msa1465260:CDS 50.0%
! GGTGAAGAGTGGATTCCTTC+TGG - tig0045103:1864-1883 Msa1465260:intergenic 50.0%
ACGGAGAACAAGGTGAAGAG+TGG - tig0045103:1875-1894 Msa1465260:intergenic 50.0%
TAAGGTGCAGAGGTTGAGGA+AGG + tig0045103:2014-2033 Msa1465260:CDS 50.0%
GAGTGTCCTAATGCTGAGTG+TGG + tig0045103:2036-2055 Msa1465260:CDS 50.0%
ATGAGACGTTGCTGGTCAGG+TGG - tig0045103:1790-1809 Msa1465260:intergenic 55.0%
CAGCAACGTCTCATCTTCGC+CGG + tig0045103:1796-1815 Msa1465260:CDS 55.0%
CATCTTCGCCGGTAAGCAGT+TGG + tig0045103:1807-1826 Msa1465260:CDS 55.0%
GCCGGTAAGCAGTTGGAAGA+CGG + tig0045103:1814-1833 Msa1465260:CDS 55.0%
GCCGTCTTCCAACTGCTTAC+CGG - tig0045103:1818-1837 Msa1465260:intergenic 55.0%
CACCTTGTTCTCCGTCTTCG+TGG + tig0045103:1880-1899 Msa1465260:CDS 55.0%
CACCACGAAGACGGAGAACA+AGG - tig0045103:1885-1904 Msa1465260:intergenic 55.0%
CTTGTTCTCCGTCTTCGTGG+TGG + tig0045103:1883-1902 Msa1465260:CDS 55.0%
TCTTAGCGCCACCACGAAGA+CGG - tig0045103:1894-1913 Msa1465260:intergenic 55.0%
CTGGTAAGGTGCAGAGGTTG+AGG + tig0045103:2010-2029 Msa1465260:CDS 55.0%
CCAGCACCACACTCAGCATT+AGG - tig0045103:2045-2064 Msa1465260:intergenic 55.0%
CCTAATGCTGAGTGTGGTGC+TGG + tig0045103:2042-2061 Msa1465260:CDS 55.0%
CGGCGAAGATGAGACGTTGC+TGG - tig0045103:1798-1817 Msa1465260:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0045103 gene 1679 2146 1679 ID=Msa1465260;Name=Msa1465260
tig0045103 mRNA 1679 2146 1679 ID=Msa1465260-mRNA-1;Parent=Msa1465260;Name=Msa1465260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|155
tig0045103 exon 1679 2146 1679 ID=Msa1465260-mRNA-1:exon:24735;Parent=Msa1465260-mRNA-1
tig0045103 CDS 1679 2146 1679 ID=Msa1465260-mRNA-1:cds;Parent=Msa1465260-mRNA-1
Gene Sequence

>Msa1465260

ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTTGAGGTTGAGTCTTCTGACACAATCGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGACCAGCAACGTCTCATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACTCTCGCCGATTACAACATCCAGAAGGAATCCACTCTTCACCTTGTTCTCCGTCTTCGTGGTGGCGCTAAGAAGCGTAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCATAGGAAGGTGAAGCTTGCTGTTCTTCAGTTTTATAAGGTTGATGATTCTGGTAAGGTGCAGAGGTTGAGGAAGGAGTGTCCTAATGCTGAGTGTGGTGCTGGAACTTTTATGGCGAATCATTTTGATCGTCATTATTGTGGTAAGTGTGGTCTTACCTATGTTTACCAGAAGGCTGAAGCTTAG
Protein sequence

>Msa1465260

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAEA*