Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966010 | XP_003620880.2 | 98.442 | 385 | 2 | 3 | 1 | 383 | 1 | 383 | 0.0 | 779 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966010 | sp|Q9SU94|ANM11_ARATH | 74.745 | 392 | 77 | 6 | 11 | 383 | 2 | 390 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0966010 | 0.810700 | 1.011848e-50 | -8.615850e-47 |
| Msa0010490 | Msa0966010 | 0.854943 | 8.787461e-62 | -8.615850e-47 |
| Msa0010500 | Msa0966010 | 0.857138 | 2.001312e-62 | -8.615850e-47 |
| Msa0011960 | Msa0966010 | 0.801444 | 8.976430e-49 | -8.615850e-47 |
| Msa0019390 | Msa0966010 | 0.844888 | 5.719126e-59 | -8.615850e-47 |
| Msa0022970 | Msa0966010 | 0.812550 | 4.007110e-51 | -8.615850e-47 |
| Msa0025730 | Msa0966010 | 0.800952 | 1.132230e-48 | -8.615850e-47 |
| Msa0029260 | Msa0966010 | 0.837928 | 3.890732e-57 | -8.615850e-47 |
| Msa0032580 | Msa0966010 | 0.822619 | 2.149711e-53 | -8.615850e-47 |
| Msa0033110 | Msa0966010 | 0.813215 | 2.865149e-51 | -8.615850e-47 |
| Msa0033260 | Msa0966010 | 0.806328 | 8.675771e-50 | -8.615850e-47 |
| Msa0037540 | Msa0966010 | -0.823124 | 1.639490e-53 | -8.615850e-47 |
| Msa0037590 | Msa0966010 | -0.826051 | 3.352821e-54 | -8.615850e-47 |
| Msa0040690 | Msa0966010 | 0.810279 | 1.247279e-50 | -8.615850e-47 |
| Msa0043660 | Msa0966010 | 0.872872 | 2.276518e-67 | -8.615850e-47 |
| Msa0045730 | Msa0966010 | 0.807651 | 4.555521e-50 | -8.615850e-47 |
| Msa0047160 | Msa0966010 | 0.841361 | 4.978419e-58 | -8.615850e-47 |
| Msa0052350 | Msa0966010 | -0.802247 | 6.141909e-49 | -8.615850e-47 |
| Msa0054750 | Msa0966010 | 0.801271 | 9.741976e-49 | -8.615850e-47 |
| Msa0055150 | Msa0966010 | 0.813730 | 2.207477e-51 | -8.615850e-47 |
| Msa0059950 | Msa0966010 | 0.822758 | 1.996067e-53 | -8.615850e-47 |
| Msa0082680 | Msa0966010 | -0.817606 | 3.023102e-52 | -8.615850e-47 |
| Msa0086180 | Msa0966010 | 0.808090 | 3.674267e-50 | -8.615850e-47 |
| Msa0091410 | Msa0966010 | 0.812500 | 4.110023e-51 | -8.615850e-47 |
| Msa0094470 | Msa0966010 | 0.801847 | 7.422021e-49 | -8.615850e-47 |
| Msa0097360 | Msa0966010 | -0.810329 | 1.216834e-50 | -8.615850e-47 |
| Msa0115130 | Msa0966010 | 0.808419 | 3.126477e-50 | -8.615850e-47 |
| Msa0118710 | Msa0966010 | 0.834288 | 3.269195e-56 | -8.615850e-47 |
| Msa0603670 | Msa0966010 | 0.807229 | 5.598308e-50 | -8.615850e-47 |
| Msa0605000 | Msa0966010 | 0.852205 | 5.378811e-61 | -8.615850e-47 |
| Msa0609000 | Msa0966010 | 0.849220 | 3.719099e-60 | -8.615850e-47 |
| Msa0612390 | Msa0966010 | 0.861920 | 7.306317e-64 | -8.615850e-47 |
| Msa0615440 | Msa0966010 | 0.805474 | 1.312042e-49 | -8.615850e-47 |
| Msa0618930 | Msa0966010 | 0.855890 | 4.657292e-62 | -8.615850e-47 |
| Msa0623200 | Msa0966010 | 0.827055 | 1.932158e-54 | -8.615850e-47 |
| Msa0631350 | Msa0966010 | 0.818351 | 2.051279e-52 | -8.615850e-47 |
| Msa0644660 | Msa0966010 | 0.804171 | 2.454714e-49 | -8.615850e-47 |
| Msa0648780 | Msa0966010 | 0.832140 | 1.120056e-55 | -8.615850e-47 |
| Msa0651930 | Msa0966010 | 0.849857 | 2.469923e-60 | -8.615850e-47 |
| Msa0685140 | Msa0966010 | 0.833646 | 4.731415e-56 | -8.615850e-47 |
| Msa0694990 | Msa0966010 | 0.816889 | 4.381894e-52 | -8.615850e-47 |
| Msa0698490 | Msa0966010 | 0.803855 | 2.855830e-49 | -8.615850e-47 |
| Msa0698660 | Msa0966010 | 0.800903 | 1.158699e-48 | -8.615850e-47 |
| Msa0698800 | Msa0966010 | 0.821066 | 4.919421e-53 | -8.615850e-47 |
| Msa0711780 | Msa0966010 | 0.800780 | 1.227562e-48 | -8.615850e-47 |
| Msa0715650 | Msa0966010 | 0.850899 | 1.259488e-60 | -8.615850e-47 |
| Msa0719420 | Msa0966010 | 0.884615 | 1.648208e-71 | -8.615850e-47 |
| Msa0719610 | Msa0966010 | 0.818352 | 2.050419e-52 | -8.615850e-47 |
| Msa0738440 | Msa0966010 | 0.823459 | 1.369177e-53 | -8.615850e-47 |
| Msa0748170 | Msa0966010 | 0.811349 | 7.317672e-51 | -8.615850e-47 |
| Msa0753140 | Msa0966010 | 0.826291 | 2.939787e-54 | -8.615850e-47 |
| Msa0763330 | Msa0966010 | 0.841971 | 3.436821e-58 | -8.615850e-47 |
| Msa0772480 | Msa0966010 | 0.845205 | 4.696811e-59 | -8.615850e-47 |
| Msa0789680 | Msa0966010 | 0.886412 | 3.497228e-72 | -8.615850e-47 |
| Msa0795820 | Msa0966010 | 0.810303 | 1.232907e-50 | -8.615850e-47 |
| Msa0798440 | Msa0966010 | 0.849919 | 2.372744e-60 | -8.615850e-47 |
| Msa0802410 | Msa0966010 | 0.884422 | 1.943498e-71 | -8.615850e-47 |
| Msa0806880 | Msa0966010 | 0.826208 | 3.078008e-54 | -8.615850e-47 |
| Msa0819060 | Msa0966010 | 0.864161 | 1.483482e-64 | -8.615850e-47 |
| Msa0819210 | Msa0966010 | 0.805374 | 1.376594e-49 | -8.615850e-47 |
| Msa0830040 | Msa0966010 | 0.811272 | 7.606814e-51 | -8.615850e-47 |
| Msa0830540 | Msa0966010 | 0.863163 | 3.029147e-64 | -8.615850e-47 |
| Msa0129190 | Msa0966010 | -0.809046 | 2.295889e-50 | -8.615850e-47 |
| Msa0131450 | Msa0966010 | 0.807838 | 4.157147e-50 | -8.615850e-47 |
| Msa0137550 | Msa0966010 | 0.846254 | 2.437451e-59 | -8.615850e-47 |
| Msa0146770 | Msa0966010 | 0.842323 | 2.773764e-58 | -8.615850e-47 |
| Msa0165950 | Msa0966010 | 0.803808 | 2.920719e-49 | -8.615850e-47 |
| Msa0169300 | Msa0966010 | 0.834317 | 3.214949e-56 | -8.615850e-47 |
| Msa0172970 | Msa0966010 | 0.816770 | 4.658326e-52 | -8.615850e-47 |
| Msa0189300 | Msa0966010 | 0.868950 | 4.459510e-66 | -8.615850e-47 |
| Msa0229170 | Msa0966010 | 0.830893 | 2.272114e-55 | -8.615850e-47 |
| Msa0231100 | Msa0966010 | 0.804331 | 2.273509e-49 | -8.615850e-47 |
| Msa0231660 | Msa0966010 | 0.883836 | 3.200879e-71 | -8.615850e-47 |
| Msa0365860 | Msa0966010 | 0.802757 | 4.820397e-49 | -8.615850e-47 |
| Msa0380100 | Msa0966010 | 0.805111 | 1.562893e-49 | -8.615850e-47 |
| Msa0385490 | Msa0966010 | 0.809445 | 1.885209e-50 | -8.615850e-47 |
| Msa0387910 | Msa0966010 | 0.806978 | 6.325451e-50 | -8.615850e-47 |
| Msa0397540 | Msa0966010 | 0.810434 | 1.155215e-50 | -8.615850e-47 |
| Msa0419520 | Msa0966010 | 0.839104 | 1.933851e-57 | -8.615850e-47 |
| Msa0465550 | Msa0966010 | 0.804215 | 2.404123e-49 | -8.615850e-47 |
| Msa0481280 | Msa0966010 | 0.805129 | 1.549200e-49 | -8.615850e-47 |
| Msa0482130 | Msa0966010 | 0.823592 | 1.274602e-53 | -8.615850e-47 |
| Msa0258250 | Msa0966010 | -0.828490 | 8.735073e-55 | -8.615850e-47 |
| Msa0279240 | Msa0966010 | 0.804623 | 1.976316e-49 | -8.615850e-47 |
| Msa0297810 | Msa0966010 | -0.844870 | 5.782108e-59 | -8.615850e-47 |
| Msa0335820 | Msa0966010 | -0.856658 | 2.772978e-62 | -8.615850e-47 |
| Msa0337650 | Msa0966010 | 0.816590 | 5.114059e-52 | -8.615850e-47 |
| Msa0345350 | Msa0966010 | 0.828736 | 7.614938e-55 | -8.615850e-47 |
| Msa0345390 | Msa0966010 | 0.810583 | 1.072718e-50 | -8.615850e-47 |
| Msa0534900 | Msa0966010 | 0.817790 | 2.746829e-52 | -8.615850e-47 |
| Msa0542090 | Msa0966010 | 0.818502 | 1.896139e-52 | -8.615850e-47 |
| Msa0542130 | Msa0966010 | 0.822339 | 2.498182e-53 | -8.615850e-47 |
| Msa0550540 | Msa0966010 | 0.817196 | 3.737821e-52 | -8.615850e-47 |
| Msa0550570 | Msa0966010 | 0.819837 | 9.417087e-53 | -8.615850e-47 |
| Msa0554290 | Msa0966010 | 0.824284 | 8.773298e-54 | -8.615850e-47 |
| Msa0581280 | Msa0966010 | 0.848908 | 4.541189e-60 | -8.615850e-47 |
| Msa0601150 | Msa0966010 | 0.824604 | 7.375108e-54 | -8.615850e-47 |
| Msa0602370 | Msa0966010 | 0.804380 | 2.221234e-49 | -8.615850e-47 |
| Msa0859180 | Msa0966010 | 0.813945 | 1.979044e-51 | -8.615850e-47 |
| Msa0867120 | Msa0966010 | 0.810391 | 1.179716e-50 | -8.615850e-47 |
| Msa0880730 | Msa0966010 | 0.806390 | 8.419769e-50 | -8.615850e-47 |
| Msa0887250 | Msa0966010 | 0.804451 | 2.147114e-49 | -8.615850e-47 |
| Msa0901450 | Msa0966010 | 0.814885 | 1.226884e-51 | -8.615850e-47 |
| Msa0925770 | Msa0966010 | 0.841465 | 4.673706e-58 | -8.615850e-47 |
| Msa0945440 | Msa0966010 | 0.830465 | 2.893062e-55 | -8.615850e-47 |
| Msa0966010 | Msa0981840 | 0.827650 | 1.391329e-54 | -8.615850e-47 |
| Msa0966010 | Msa0989540 | 0.835374 | 1.742105e-56 | -8.615850e-47 |
| Msa0966010 | Msa1001350 | 0.816602 | 5.082126e-52 | -8.615850e-47 |
| Msa0966010 | Msa1019240 | 0.804360 | 2.242813e-49 | -8.615850e-47 |
| Msa0966010 | Msa1029970 | 0.819864 | 9.285081e-53 | -8.615850e-47 |
| Msa0966010 | Msa1064250 | 0.809314 | 2.011232e-50 | -8.615850e-47 |
| Msa0966010 | Msa1072710 | 0.831643 | 1.486184e-55 | -8.615850e-47 |
| Msa0966010 | Msa1077030 | 0.832257 | 1.048015e-55 | -8.615850e-47 |
| Msa0966010 | Msa1089320 | 0.804010 | 2.651773e-49 | -8.615850e-47 |
| Msa0966010 | Msa1104210 | 0.803023 | 4.248753e-49 | -8.615850e-47 |
| Msa0966010 | Msa1120810 | 0.834724 | 2.539898e-56 | -8.615850e-47 |
| Msa0966010 | Msa1126850 | 0.818775 | 1.643743e-52 | -8.615850e-47 |
| Msa0966010 | Msa1133230 | 0.818168 | 2.255852e-52 | -8.615850e-47 |
| Msa0966010 | Msa1133250 | 0.832324 | 1.008680e-55 | -8.615850e-47 |
| Msa0966010 | Msa1135800 | -0.828824 | 7.251687e-55 | -8.615850e-47 |
| Msa0966010 | Msa1138870 | 0.810422 | 1.161600e-50 | -8.615850e-47 |
| Msa0966010 | Msa1165780 | 0.816460 | 5.467574e-52 | -8.615850e-47 |
| Msa0966010 | Msa1166870 | 0.820092 | 8.232687e-53 | -8.615850e-47 |
| Msa0966010 | Msa1176720 | 0.813518 | 2.458403e-51 | -8.615850e-47 |
| Msa0966010 | Msa1181250 | 0.819211 | 1.308326e-52 | -8.615850e-47 |
| Msa0966010 | Msa1181330 | 0.825170 | 5.424576e-54 | -8.615850e-47 |
| Msa0966010 | Msa1197320 | 0.818430 | 1.968548e-52 | -8.615850e-47 |
| Msa0966010 | Msa1209200 | 0.828252 | 9.967455e-55 | -8.615850e-47 |
| Msa0966010 | Msa1209260 | 0.852944 | 3.310452e-61 | -8.615850e-47 |
| Msa0966010 | Msa1209760 | 0.801038 | 1.087145e-48 | -8.615850e-47 |
| Msa0966010 | Msa1218500 | 0.812645 | 3.819752e-51 | -8.615850e-47 |
| Msa0966010 | Msa1250790 | 0.834175 | 3.488966e-56 | -8.615850e-47 |
| Msa0966010 | Msa1262890 | 0.811616 | 6.405936e-51 | -8.615850e-47 |
| Msa0966010 | Msa1265630 | 0.839352 | 1.668312e-57 | -8.615850e-47 |
| Msa0966010 | Msa1327510 | 0.802511 | 5.418000e-49 | -8.615850e-47 |
| Msa0966010 | Msa1331710 | 0.816282 | 5.994236e-52 | -8.615850e-47 |
| Msa0966010 | Msa1351540 | 0.807897 | 4.037883e-50 | -8.615850e-47 |
| Msa0966010 | Msa1355700 | 0.839208 | 1.817972e-57 | -8.615850e-47 |
| Msa0966010 | Msa1360140 | 0.804360 | 2.242133e-49 | -8.615850e-47 |
| Msa0966010 | Msa1362090 | 0.804078 | 2.567576e-49 | -8.615850e-47 |
| Msa0966010 | Msa1364210 | 0.804017 | 2.643790e-49 | -8.615850e-47 |
| Msa0966010 | Msa1381480 | 0.810824 | 9.512172e-51 | -8.615850e-47 |
| Msa0966010 | Msa1386050 | 0.824618 | 7.320519e-54 | -8.615850e-47 |
| Msa0966010 | Msa1394290 | 0.808139 | 3.586448e-50 | -8.615850e-47 |
| Msa0966010 | Msa1413500 | 0.826914 | 2.088207e-54 | -8.615850e-47 |
| Msa0966010 | Msa1419870 | 0.801101 | 1.055560e-48 | -8.615850e-47 |
| Msa0966010 | Msa1436520 | 0.854246 | 1.398857e-61 | -8.615850e-47 |
| Msa0966010 | Msa1450550 | -0.805349 | 1.393428e-49 | -8.615850e-47 |
| Msa0966010 | Msa1454680 | 0.807835 | 4.163560e-50 | -8.615850e-47 |
| Msa0966010 | Msa1457920 | 0.833025 | 6.759057e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966010 | MtrunA17_Chr6g0488051 | 98.442 | 385 | 2 | 3 | 1 | 383 | 1 | 383 | 0.0 | 779 |
| Msa0966010 | MtrunA17_Chr1g0165131 | 39.763 | 337 | 179 | 6 | 56 | 370 | 68 | 402 | 6.35e-78 | 246 |
| Msa0966010 | MtrunA17_Chr3g0082021 | 38.019 | 313 | 155 | 10 | 64 | 341 | 256 | 564 | 2.04e-57 | 197 |
| Msa0966010 | MtrunA17_Chr4g0067351 | 35.390 | 308 | 183 | 9 | 52 | 347 | 130 | 433 | 4.19e-53 | 184 |
| Msa0966010 | MtrunA17_Chr2g0306801 | 33.524 | 349 | 198 | 11 | 64 | 380 | 26 | 372 | 3.45e-52 | 178 |
| Msa0966010 | MtrunA17_Chr2g0295951 | 32.931 | 331 | 204 | 10 | 52 | 369 | 132 | 457 | 1.34e-50 | 177 |
| Msa0966010 | MtrunA17_Chr1g0211591 | 37.815 | 238 | 129 | 5 | 87 | 306 | 3 | 239 | 2.16e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966010 | AT4G29510.1 | 74.745 | 392 | 77 | 6 | 11 | 383 | 2 | 390 | 0.0 | 601 |
| Msa0966010 | AT2G19670.1 | 72.312 | 372 | 92 | 2 | 12 | 383 | 6 | 366 | 0.0 | 567 |
| Msa0966010 | AT3G20020.1 | 39.884 | 346 | 167 | 5 | 64 | 370 | 83 | 426 | 5.35e-80 | 252 |
| Msa0966010 | AT3G20020.3 | 39.942 | 343 | 165 | 5 | 64 | 367 | 83 | 423 | 4.75e-79 | 250 |
| Msa0966010 | AT3G20020.2 | 37.283 | 346 | 154 | 5 | 64 | 370 | 83 | 404 | 3.77e-68 | 221 |
| Msa0966010 | AT3G12270.1 | 35.925 | 373 | 202 | 12 | 1 | 345 | 181 | 544 | 9.47e-62 | 209 |
| Msa0966010 | AT1G04870.2 | 33.434 | 332 | 184 | 9 | 64 | 363 | 35 | 361 | 2.28e-52 | 179 |
| Msa0966010 | AT5G49020.2 | 33.533 | 334 | 206 | 9 | 52 | 373 | 137 | 466 | 8.95e-52 | 181 |
| Msa0966010 | AT5G49020.1 | 33.533 | 334 | 206 | 9 | 52 | 373 | 139 | 468 | 9.57e-52 | 181 |
| Msa0966010 | AT3G06930.2 | 33.030 | 330 | 205 | 9 | 52 | 369 | 136 | 461 | 2.03e-51 | 180 |
| Msa0966010 | AT3G06930.1 | 33.030 | 330 | 205 | 9 | 52 | 369 | 136 | 461 | 2.26e-51 | 180 |
| Msa0966010 | AT1G04870.1 | 29.008 | 262 | 150 | 8 | 134 | 363 | 1 | 258 | 1.60e-28 | 113 |
Find 84 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCAAAATTTCACAAAAT+TGG | 0.115253 | 6_3:-93957486 | None:intergenic |
| GACTGCAAATTGTGAAAATT+AGG | 0.194870 | 6_3:-93953528 | None:intergenic |
| AGAAGAACCAGAACAGAATT+TGG | 0.219857 | 6_3:-93957579 | None:intergenic |
| CCATTTAAACCCTTGATTAC+AGG | 0.233583 | 6_3:-93957770 | None:intergenic |
| AAATTCTGTTCTGGTTCTTC+TGG | 0.268787 | 6_3:+93957581 | Msa0966010:three_prime_UTR |
| CATCAAGAAGCAAGCCTTGA+TGG | 0.279886 | 6_3:+93956348 | Msa0966010:CDS |
| GAAATGATTATATCAACTTT+AGG | 0.289343 | 6_3:-93955768 | None:intergenic |
| TCAGTTTGGAACAATGTATA+TGG | 0.294266 | 6_3:+93956310 | Msa0966010:intron |
| AGATAGAGTGATGCAATATC+TGG | 0.297140 | 6_3:-93955995 | None:intergenic |
| CGAGCAGCAACAAGCTTAAA+AGG | 0.335924 | 6_3:-93956645 | None:intergenic |
| ACTGCAAATTGTGAAAATTA+GGG | 0.347428 | 6_3:-93953527 | None:intergenic |
| TTTGTGCCCAAATTCTGTTC+TGG | 0.349267 | 6_3:+93957572 | Msa0966010:three_prime_UTR |
| CCTGTAATCAAGGGTTTAAA+TGG | 0.350275 | 6_3:+93957770 | Msa0966010:three_prime_UTR |
| AAACAATGACACAAGCAAAT+TGG | 0.351568 | 6_3:-93957693 | None:intergenic |
| GAAACAAACAGTCCTATATC+TGG | 0.356556 | 6_3:+93957284 | Msa0966010:CDS |
| TTACAGTTACTATCACTTGA+TGG | 0.370300 | 6_3:+93957720 | Msa0966010:three_prime_UTR |
| TTTGTAATCTTTATCTTCAA+TGG | 0.372756 | 6_3:-93956023 | None:intergenic |
| GACATGTGCTGCCCCTGCTT+TGG | 0.382365 | 6_3:-93955414 | None:intergenic |
| TCACAAAATTGGAGAGCATA+TGG | 0.382588 | 6_3:-93957475 | None:intergenic |
| ATAAAGTTACAGTCTTTAAT+CGG | 0.386041 | 6_3:-93957522 | None:intergenic |
| CAATGTGTACTCCGCGATCT+TGG | 0.388811 | 6_3:-93957261 | None:intergenic |
| CTCTATTCTCTACTAGTTCA+TGG | 0.392594 | 6_3:+93953550 | Msa0966010:exon |
| AGTTCGTTGCGATCTGATTC+TGG | 0.393515 | 6_3:-93956393 | None:intergenic |
| ATTATATCAACTTTAGGAAC+AGG | 0.395657 | 6_3:-93955762 | None:intergenic |
| CTTGATGTCGGTGCCGGGAC+TGG | 0.401470 | 6_3:+93955371 | Msa0966010:CDS |
| GAAACTAATGGTTATTCTAA+AGG | 0.402861 | 6_3:+93955581 | Msa0966010:CDS |
| CAACAATCACCTTCGATTTG+AGG | 0.405593 | 6_3:+93953631 | Msa0966010:CDS |
| AAATTGATGGGCTTCTCAAC+AGG | 0.411678 | 6_3:+93956726 | Msa0966010:CDS |
| AAAACGTTATTTATCAGAAT+AGG | 0.416237 | 6_3:+93955324 | Msa0966010:CDS |
| TCAAGACATCTTCCAGATAT+AGG | 0.420611 | 6_3:-93957296 | None:intergenic |
| TACAAAGTGTCATAAATTGA+TGG | 0.424292 | 6_3:+93956713 | Msa0966010:CDS |
| CACATTGCAGGAAATGTTGA+AGG | 0.429613 | 6_3:+93955277 | Msa0966010:intron |
| TGCTCTTTGCACGTGACAAA+TGG | 0.430259 | 6_3:+93955838 | Msa0966010:CDS |
| TCACTATTCTGTGCCAAAGC+AGG | 0.443662 | 6_3:+93955401 | Msa0966010:CDS |
| AGGACATTCAAGTTCGTCTC+AGG | 0.448516 | 6_3:-93957750 | None:intergenic |
| GGTCACAACCACCCATTGAT+TGG | 0.451883 | 6_3:-93953700 | None:intergenic |
| GAAGAACCAGAACAGAATTT+GGG | 0.457269 | 6_3:-93957578 | None:intergenic |
| ATCTAACCTCGACCAATCAA+TGG | 0.460391 | 6_3:+93953688 | Msa0966010:CDS |
| AATATTTGTTGAAATCTTTG+TGG | 0.464417 | 6_3:-93957656 | None:intergenic |
| TTTGATTCTTACTCTCACTT+TGG | 0.465232 | 6_3:+93953761 | Msa0966010:CDS |
| GCAAGCCTTGATGGAGCCTC+TGG | 0.466123 | 6_3:+93956357 | Msa0966010:CDS |
| ACTTGAATGTCCTGTAATCA+AGG | 0.467624 | 6_3:+93957760 | Msa0966010:three_prime_UTR |
| ACAAAGTGTCATAAATTGAT+GGG | 0.472701 | 6_3:+93956714 | Msa0966010:CDS |
| GCAGGTCGAGTGCTCTCATA+TGG | 0.479543 | 6_3:+93955535 | Msa0966010:intron |
| TATAATCATTTCCGAATGGA+TGG | 0.481760 | 6_3:+93955779 | Msa0966010:CDS |
| ATGCTCAAGTATTCATTGAA+TGG | 0.485369 | 6_3:+93957396 | Msa0966010:CDS |
| GTAGTTCTTGATGTCGGTGC+CGG | 0.486285 | 6_3:+93955365 | Msa0966010:CDS |
| AAGGAAATAGTTGAAACTAA+TGG | 0.493872 | 6_3:+93955569 | Msa0966010:CDS |
| AGTGCTCTCATATGGCTGAC+AGG | 0.495608 | 6_3:+93955543 | Msa0966010:CDS |
| CACTATTCTGTGCCAAAGCA+GGG | 0.510201 | 6_3:+93955402 | Msa0966010:CDS |
| CAAGAAATATCCCATCCATT+CGG | 0.524018 | 6_3:-93955790 | None:intergenic |
| TAGTTCTTGATGTCGGTGCC+GGG | 0.525835 | 6_3:+93955366 | Msa0966010:CDS |
| TCAAGTATTCATTGAATGGC+AGG | 0.530106 | 6_3:+93957400 | Msa0966010:CDS |
| TCTAACCTCGACCAATCAAT+GGG | 0.534105 | 6_3:+93953689 | Msa0966010:CDS |
| CTTGAATGTCCTGTAATCAA+GGG | 0.549606 | 6_3:+93957761 | Msa0966010:three_prime_UTR |
| CAGGCGATGCAATGCTTCGA+GGG | 0.549835 | 6_3:+93957419 | Msa0966010:CDS |
| TAGTGATAAAATTCCAGTCC+CGG | 0.559941 | 6_3:-93955384 | None:intergenic |
| GCAGGCGATGCAATGCTTCG+AGG | 0.569433 | 6_3:+93957418 | Msa0966010:CDS |
| AACCACCCATTGATTGGTCG+AGG | 0.570435 | 6_3:-93953694 | None:intergenic |
| TCTATTCTCTACTAGTTCAT+GGG | 0.571590 | 6_3:+93953551 | Msa0966010:exon |
| ATCAAAGTAGTAATCAGCGC+TGG | 0.573071 | 6_3:-93953744 | None:intergenic |
| GATAGAGTGATGCAATATCT+GGG | 0.576462 | 6_3:-93955994 | None:intergenic |
| TCATATGGCTGACAGGGCAA+AGG | 0.579225 | 6_3:+93955550 | Msa0966010:CDS |
| TTGATATAATCATTTCCGAA+TGG | 0.588889 | 6_3:+93955775 | Msa0966010:CDS |
| AATAAAGTAGTTCTTGATGT+CGG | 0.594677 | 6_3:+93955359 | Msa0966010:CDS |
| TCAAACAAACAACACAAACA+TGG | 0.596120 | 6_3:+93953595 | Msa0966010:CDS |
| GATGTCTTGACCATTTGTGA+GGG | 0.596606 | 6_3:+93957309 | Msa0966010:CDS |
| GTCAACCAGAGGCTCCATCA+AGG | 0.601626 | 6_3:-93956362 | None:intergenic |
| AGCAAATTGGCAGAGACTTG+AGG | 0.602712 | 6_3:-93957680 | None:intergenic |
| ATAATCATTTCCGAATGGAT+GGG | 0.608420 | 6_3:+93955780 | Msa0966010:CDS |
| CATCAGCATCCTCAAATCGA+AGG | 0.616743 | 6_3:-93953640 | None:intergenic |
| GTAATCTTTATCTTCAATGG+CGG | 0.617207 | 6_3:-93956020 | None:intergenic |
| AACGAACTGTCAGCTACTCA+AGG | 0.617885 | 6_3:+93956408 | Msa0966010:CDS |
| GTGCTCTCATATGGCTGACA+GGG | 0.621520 | 6_3:+93955544 | Msa0966010:CDS |
| TGTCTTGACCATTTGTGAGG+GGG | 0.625821 | 6_3:+93957311 | Msa0966010:CDS |
| CAAGATCGCGGAGTACACAT+TGG | 0.628631 | 6_3:+93957262 | Msa0966010:CDS |
| TGGTCAACTGTGTCAACCAG+AGG | 0.637964 | 6_3:-93956373 | None:intergenic |
| TATTTGCAGGGCCAAGATCG+CGG | 0.646643 | 6_3:+93957250 | Msa0966010:intron |
| ATGTCTTGACCATTTGTGAG+GGG | 0.652961 | 6_3:+93957310 | Msa0966010:CDS |
| AGATGTCTTGACCATTTGTG+AGG | 0.654125 | 6_3:+93957308 | Msa0966010:CDS |
| AGCATTATATCAACATCCCG+AGG | 0.654468 | 6_3:-93957378 | None:intergenic |
| ACTATTCTGTGCCAAAGCAG+GGG | 0.658809 | 6_3:+93955403 | Msa0966010:CDS |
| AACCTCGACCAATCAATGGG+TGG | 0.673476 | 6_3:+93953692 | Msa0966010:CDS |
| AATTGTAGGGAGCATGACTG+TGG | 0.688544 | 6_3:+93957338 | Msa0966010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAATCATTTTTTTTG+GGG | - | chr6_3:93953821-93953840 | None:intergenic | 10.0% |
| !!! | AAAAAATGATTTTTTTTATC+TGG | + | chr6_3:93953824-93953843 | Msa0966010:intron | 10.0% |
| !!! | AAAAATGATTTTTTTTATCT+GGG | + | chr6_3:93953825-93953844 | Msa0966010:intron | 10.0% |
| !! | TATTCTTAAAAAAAGAAAAT+TGG | + | chr6_3:93956866-93956885 | Msa0966010:intron | 10.0% |
| !! | ATTCTTAAAAAAAGAAAATT+GGG | + | chr6_3:93956867-93956886 | Msa0966010:intron | 10.0% |
| !! | TGTTAAATTAATAAACTTGA+TGG | + | chr6_3:93953871-93953890 | Msa0966010:intron | 15.0% |
| !! | AAAAATTAATGAAGATAGTA+AGG | - | chr6_3:93954204-93954223 | None:intergenic | 15.0% |
| !! | AATTAACCTTTGTATTTAAA+TGG | + | chr6_3:93954733-93954752 | Msa0966010:intron | 15.0% |
| !! | AAACAAAACTAAAAATTTCA+AGG | - | chr6_3:93956221-93956240 | None:intergenic | 15.0% |
| !! | TTCTTAAAAAAAGAAAATTG+GGG | + | chr6_3:93956868-93956887 | Msa0966010:intron | 15.0% |
| !!! | ATTCATTTTTATCATTTTAG+TGG | + | chr6_3:93957197-93957216 | Msa0966010:intron | 15.0% |
| !!! | TTGTTTGATTGTTGTTTTTT+CGG | - | chr6_3:93953583-93953602 | None:intergenic | 20.0% |
| !!! | TAATTCGACAACAATTTTTT+TGG | + | chr6_3:93954119-93954138 | Msa0966010:intron | 20.0% |
| !!! | GTTAATAAAGTTTGAAATCA+TGG | + | chr6_3:93954141-93954160 | Msa0966010:intron | 20.0% |
| !!! | ATTAAATTGCTGTTTAGAAT+TGG | + | chr6_3:93954235-93954254 | Msa0966010:intron | 20.0% |
| !! | ATAAGTTATTTATCCAAACA+GGG | - | chr6_3:93954272-93954291 | None:intergenic | 20.0% |
| !! | TATAAGTTATTTATCCAAAC+AGG | - | chr6_3:93954273-93954292 | None:intergenic | 20.0% |
| !! | ATTATACATAAGCTCTTATA+CGG | - | chr6_3:93954309-93954328 | None:intergenic | 20.0% |
| !! | TACGTAAAAATTAACAACAT+CGG | - | chr6_3:93954519-93954538 | None:intergenic | 20.0% |
| !! | AAAACAAATTGACAACAATT+TGG | + | chr6_3:93954610-93954629 | Msa0966010:intron | 20.0% |
| !! | AAAACGTTATTTATCAGAAT+AGG | + | chr6_3:93955324-93955343 | Msa0966010:CDS | 20.0% |
| !!! | ATTTTCAGTATATTACCTTT+TGG | + | chr6_3:93955640-93955659 | Msa0966010:intron | 20.0% |
| !! | GAAATGATTATATCAACTTT+AGG | - | chr6_3:93955771-93955790 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTCTTTTTGTGT+AGG | + | chr6_3:93955952-93955971 | Msa0966010:intron | 20.0% |
| !! | TTTGTAATCTTTATCTTCAA+TGG | - | chr6_3:93956026-93956045 | None:intergenic | 20.0% |
| !!! | GATGAAATTTTCTTTTCATT+TGG | + | chr6_3:93956510-93956529 | Msa0966010:intron | 20.0% |
| !!! | AATTTTAAAACTGTTCCAAA+TGG | + | chr6_3:93956928-93956947 | Msa0966010:intron | 20.0% |
| !!! | ATTTTAAAACTGTTCCAAAT+GGG | + | chr6_3:93956929-93956948 | Msa0966010:intron | 20.0% |
| !!! | CATGTATTTTTTCTGAAAAT+CGG | + | chr6_3:93957083-93957102 | Msa0966010:intron | 20.0% |
| !! | AAATGGTATTATAACAAAGA+CGG | - | chr6_3:93957162-93957181 | None:intergenic | 20.0% |
| !!! | TTGTTATAATACCATTTTAG+TGG | + | chr6_3:93957165-93957184 | Msa0966010:intron | 20.0% |
| !! | TTTCCAAAATTTCACAAAAT+TGG | - | chr6_3:93957489-93957508 | None:intergenic | 20.0% |
| !! | ATAAAGTTACAGTCTTTAAT+CGG | - | chr6_3:93957525-93957544 | None:intergenic | 20.0% |
| !!! | AATATTTGTTGAAATCTTTG+TGG | - | chr6_3:93957659-93957678 | None:intergenic | 20.0% |
| !!! | AAATTAGGGTTTTAGCTTTT+AGG | - | chr6_3:93953516-93953535 | None:intergenic | 25.0% |
| ! | ACTGCAAATTGTGAAAATTA+GGG | - | chr6_3:93953530-93953549 | None:intergenic | 25.0% |
| !!! | ATAAACTTGATGGCTAATTT+TGG | + | chr6_3:93953881-93953900 | Msa0966010:intron | 25.0% |
| !!! | TGTTTGTTTTTGTTTTTGCA+GGG | + | chr6_3:93953907-93953926 | Msa0966010:intron | 25.0% |
| ! | AATTGTACAGTTCAAAATCA+TGG | + | chr6_3:93954639-93954658 | Msa0966010:intron | 25.0% |
| ! | CACAAAATGGTACAAAAATT+TGG | + | chr6_3:93954840-93954859 | Msa0966010:intron | 25.0% |
| ! | AAATGGTACAAAAATTTGGT+TGG | + | chr6_3:93954844-93954863 | Msa0966010:intron | 25.0% |
| ! | TAAAACCAATTCTTAACAAC+TGG | - | chr6_3:93955104-93955123 | None:intergenic | 25.0% |
| ! | TTATGCATGTTGTAAATACA+CGG | + | chr6_3:93955139-93955158 | Msa0966010:intron | 25.0% |
| !!! | AATAACGTTTTGATATGTCT+TGG | - | chr6_3:93955315-93955334 | None:intergenic | 25.0% |
| ! | AATAAAGTAGTTCTTGATGT+CGG | + | chr6_3:93955359-93955378 | Msa0966010:CDS | 25.0% |
| ! | AAGGAAATAGTTGAAACTAA+TGG | + | chr6_3:93955569-93955588 | Msa0966010:CDS | 25.0% |
| ! | GAAACTAATGGTTATTCTAA+AGG | + | chr6_3:93955581-93955600 | Msa0966010:CDS | 25.0% |
| ! | AACTGTAGAAAACAACATTA+TGG | - | chr6_3:93955703-93955722 | None:intergenic | 25.0% |
| !!! | ACAGTTATAACAGTTTTGAA+AGG | + | chr6_3:93955717-93955736 | Msa0966010:intron | 25.0% |
| !!! | CAGTTATAACAGTTTTGAAA+GGG | + | chr6_3:93955718-93955737 | Msa0966010:intron | 25.0% |
| !! | ATTATATCAACTTTAGGAAC+AGG | - | chr6_3:93955765-93955784 | None:intergenic | 25.0% |
| ! | TTGATATAATCATTTCCGAA+TGG | + | chr6_3:93955775-93955794 | Msa0966010:CDS | 25.0% |
| !! | AATTTCAAGGTTTTCAACAA+CGG | - | chr6_3:93956208-93956227 | None:intergenic | 25.0% |
| !! | TACAAAGTGTCATAAATTGA+TGG | + | chr6_3:93956713-93956732 | Msa0966010:CDS | 25.0% |
| !! | ACAAAGTGTCATAAATTGAT+GGG | + | chr6_3:93956714-93956733 | Msa0966010:CDS | 25.0% |
| ! | TTAAAAAAAGAAAATTGGGG+AGG | + | chr6_3:93956871-93956890 | Msa0966010:intron | 25.0% |
| ! | TAAAAAAAGAAAATTGGGGA+GGG | + | chr6_3:93956872-93956891 | Msa0966010:intron | 25.0% |
| ! | TTGTGTACATATATATTTGC+AGG | + | chr6_3:93957237-93957256 | Msa0966010:intron | 25.0% |
| ! | TGTGTACATATATATTTGCA+GGG | + | chr6_3:93957238-93957257 | Msa0966010:intron | 25.0% |
| !! | TCTCCAATTTTGTGAAATTT+TGG | + | chr6_3:93957483-93957502 | Msa0966010:three_prime_UTR | 25.0% |
| GACTGCAAATTGTGAAAATT+AGG | - | chr6_3:93953531-93953550 | None:intergenic | 30.0% | |
| TCTATTCTCTACTAGTTCAT+GGG | + | chr6_3:93953551-93953570 | Msa0966010:exon | 30.0% | |
| TCAAACAAACAACACAAACA+TGG | + | chr6_3:93953595-93953614 | Msa0966010:CDS | 30.0% | |
| ! | TTTTGTCATTGGAATCATCA+AGG | - | chr6_3:93953724-93953743 | None:intergenic | 30.0% |
| TTTGATTCTTACTCTCACTT+TGG | + | chr6_3:93953761-93953780 | Msa0966010:CDS | 30.0% | |
| TTTATCTGGGTGTGTTTAAT+TGG | + | chr6_3:93953838-93953857 | Msa0966010:intron | 30.0% | |
| !!! | CTGTTTGTTTTTGTTTTTGC+AGG | + | chr6_3:93953906-93953925 | Msa0966010:intron | 30.0% |
| TGAACTTGAAACATAAGAAG+AGG | - | chr6_3:93953969-93953988 | None:intergenic | 30.0% | |
| TCCATGATAGCTTATGAAAA+CGG | - | chr6_3:93954381-93954400 | None:intergenic | 30.0% | |
| GCTTATTTGAACTTATCTAC+TGG | - | chr6_3:93954483-93954502 | None:intergenic | 30.0% | |
| TCAAATAAGCCTATGCAAAT+AGG | + | chr6_3:93954493-93954512 | Msa0966010:intron | 30.0% | |
| ! | TGTAAGTACATTGAAAGCAT+TGG | + | chr6_3:93954544-93954563 | Msa0966010:intron | 30.0% |
| CAAATTGACAACAATTTGGT+TGG | + | chr6_3:93954614-93954633 | Msa0966010:intron | 30.0% | |
| TTGACGCCATTTAAATACAA+AGG | - | chr6_3:93954742-93954761 | None:intergenic | 30.0% | |
| GTTAACGCAGTTTAAATATG+AGG | - | chr6_3:93954968-93954987 | None:intergenic | 30.0% | |
| AAAATTGACAGCAATTTGGA+TGG | - | chr6_3:93954990-93955009 | None:intergenic | 30.0% | |
| AGCAAAAATTGACAGCAATT+TGG | - | chr6_3:93954994-93955013 | None:intergenic | 30.0% | |
| ! | GTTTTCCAGTTGTTAAGAAT+TGG | + | chr6_3:93955096-93955115 | Msa0966010:intron | 30.0% |
| ! | TATTCTTTTCATGCTTGATC+TGG | + | chr6_3:93955224-93955243 | Msa0966010:intron | 30.0% |
| ! | TTCAGTATATTACCTTTTGG+TGG | + | chr6_3:93955643-93955662 | Msa0966010:intron | 30.0% |
| TATAATCATTTCCGAATGGA+TGG | + | chr6_3:93955779-93955798 | Msa0966010:CDS | 30.0% | |
| ATAATCATTTCCGAATGGAT+GGG | + | chr6_3:93955780-93955799 | Msa0966010:CDS | 30.0% | |
| GTAATCTTTATCTTCAATGG+CGG | - | chr6_3:93956023-93956042 | None:intergenic | 30.0% | |
| ACTCAATCATATTTAGCAAG+AGG | - | chr6_3:93956077-93956096 | None:intergenic | 30.0% | |
| !! | GAGGTAAATAAGTATTGGTT+TGG | - | chr6_3:93956121-93956140 | None:intergenic | 30.0% |
| TTTGGGAGGTAAATAAGTAT+TGG | - | chr6_3:93956126-93956145 | None:intergenic | 30.0% | |
| GAGAAAAGAAATTTGCATGT+CGG | - | chr6_3:93956149-93956168 | None:intergenic | 30.0% | |
| AAAATGATATTTGTGCCATC+AGG | + | chr6_3:93956246-93956265 | Msa0966010:intron | 30.0% | |
| AGAAAGTTAAATACACCTGA+TGG | - | chr6_3:93956264-93956283 | None:intergenic | 30.0% | |
| ! | TTCCATTTTCCATATCAGTT+TGG | + | chr6_3:93956296-93956315 | Msa0966010:intron | 30.0% |
| TTCCAAACTGATATGGAAAA+TGG | - | chr6_3:93956301-93956320 | None:intergenic | 30.0% | |
| TACATTGTTCCAAACTGATA+TGG | - | chr6_3:93956308-93956327 | None:intergenic | 30.0% | |
| ! | TCAGTTTGGAACAATGTATA+TGG | + | chr6_3:93956310-93956329 | Msa0966010:intron | 30.0% |
| TGTATGAAACATACAATGCA+AGG | - | chr6_3:93956476-93956495 | None:intergenic | 30.0% | |
| GATAAAGAACTGAAGTAGAA+AGG | - | chr6_3:93956758-93956777 | None:intergenic | 30.0% | |
| ACTTCAGTTCTTTATCTTTG+TGG | + | chr6_3:93956762-93956781 | Msa0966010:intron | 30.0% | |
| AAAAAAAGAAAATTGGGGAG+GGG | + | chr6_3:93956873-93956892 | Msa0966010:intron | 30.0% | |
| GGGATTATTATCAATTAGTG+TGG | + | chr6_3:93956895-93956914 | Msa0966010:intron | 30.0% | |
| GACATAATTCAAAACCCATT+TGG | - | chr6_3:93956946-93956965 | None:intergenic | 30.0% | |
| TTAACTGAACTGAAAAGAAC+TGG | + | chr6_3:93957037-93957056 | Msa0966010:intron | 30.0% | |
| ATGCTCAAGTATTCATTGAA+TGG | + | chr6_3:93957396-93957415 | Msa0966010:CDS | 30.0% | |
| AAACAATGACACAAGCAAAT+TGG | - | chr6_3:93957696-93957715 | None:intergenic | 30.0% | |
| TTACAGTTACTATCACTTGA+TGG | + | chr6_3:93957720-93957739 | Msa0966010:three_prime_UTR | 30.0% | |
| CTCTATTCTCTACTAGTTCA+TGG | + | chr6_3:93953550-93953569 | Msa0966010:exon | 35.0% | |
| CAGCTTGTATAAACAGTTCT+AGG | + | chr6_3:93954031-93954050 | Msa0966010:intron | 35.0% | |
| ! | GCTGTGTTAATTTGACACAT+TGG | + | chr6_3:93954586-93954605 | Msa0966010:intron | 35.0% |
| ! | GCTGTGTTATTGACACAAAA+TGG | + | chr6_3:93954827-93954846 | Msa0966010:intron | 35.0% |
| ! | TTTATTTCTCGTGATGCTCT+TGG | + | chr6_3:93955198-93955217 | Msa0966010:intron | 35.0% |
| ! | TTTTCATGCTTGATCTGGAA+GGG | + | chr6_3:93955229-93955248 | Msa0966010:intron | 35.0% |
| ATTTCCTGCAATGTGAAAAC+AGG | - | chr6_3:93955272-93955291 | None:intergenic | 35.0% | |
| TAGTGATAAAATTCCAGTCC+CGG | - | chr6_3:93955387-93955406 | None:intergenic | 35.0% | |
| TGCGTGTGCACAATTTAAAA+TGG | - | chr6_3:93955518-93955537 | None:intergenic | 35.0% | |
| ! | ATTTTAAATTGTGCACACGC+AGG | + | chr6_3:93955517-93955536 | Msa0966010:intron | 35.0% |
| ! | AGTATATTACCTTTTGGTGG+AGG | + | chr6_3:93955646-93955665 | Msa0966010:intron | 35.0% |
| ! | GTATATTACCTTTTGGTGGA+GGG | + | chr6_3:93955647-93955666 | Msa0966010:intron | 35.0% |
| CAAGAAATATCCCATCCATT+CGG | - | chr6_3:93955793-93955812 | None:intergenic | 35.0% | |
| ACTACTTATCAACACGAGTA+AGG | - | chr6_3:93955881-93955900 | None:intergenic | 35.0% | |
| ATATTGCATGTACCAGAATC+TGG | + | chr6_3:93955908-93955927 | Msa0966010:intron | 35.0% | |
| GATAGAGTGATGCAATATCT+GGG | - | chr6_3:93955997-93956016 | None:intergenic | 35.0% | |
| AGATAGAGTGATGCAATATC+TGG | - | chr6_3:93955998-93956017 | None:intergenic | 35.0% | |
| !! | AGAAATTTGCATGTCGGTTT+GGG | - | chr6_3:93956143-93956162 | None:intergenic | 35.0% |
| ! | AAGAAATTTGCATGTCGGTT+TGG | - | chr6_3:93956144-93956163 | None:intergenic | 35.0% |
| !! | CATAAAAGCATCATCAGAAC+TGG | - | chr6_3:93956444-93956463 | None:intergenic | 35.0% |
| !!! | AGACATTTTTGAGATGTCCA+TGG | - | chr6_3:93956601-93956620 | None:intergenic | 35.0% |
| GACATCTCAAAAATGTCTTC+AGG | + | chr6_3:93956603-93956622 | Msa0966010:CDS | 35.0% | |
| !! | TTGTGGTTTGCTTTGTCAAT+AGG | + | chr6_3:93956779-93956798 | Msa0966010:intron | 35.0% |
| AAAAAAGAAAATTGGGGAGG+GGG | + | chr6_3:93956874-93956893 | Msa0966010:intron | 35.0% | |
| GAAACAAACAGTCCTATATC+TGG | + | chr6_3:93957284-93957303 | Msa0966010:CDS | 35.0% | |
| TCAAGACATCTTCCAGATAT+AGG | - | chr6_3:93957299-93957318 | None:intergenic | 35.0% | |
| !! | CCGAGGATTCTTTTTATTTG+GGG | - | chr6_3:93957364-93957383 | None:intergenic | 35.0% |
| CCCCAAATAAAAAGAATCCT+CGG | + | chr6_3:93957361-93957380 | Msa0966010:CDS | 35.0% | |
| !! | CCCGAGGATTCTTTTTATTT+GGG | - | chr6_3:93957365-93957384 | None:intergenic | 35.0% |
| CCCAAATAAAAAGAATCCTC+GGG | + | chr6_3:93957362-93957381 | Msa0966010:CDS | 35.0% | |
| ! | TCCCGAGGATTCTTTTTATT+TGG | - | chr6_3:93957366-93957385 | None:intergenic | 35.0% |
| TCAAGTATTCATTGAATGGC+AGG | + | chr6_3:93957400-93957419 | Msa0966010:CDS | 35.0% | |
| ! | TCACAAAATTGGAGAGCATA+TGG | - | chr6_3:93957478-93957497 | None:intergenic | 35.0% |
| GAAGAACCAGAACAGAATTT+GGG | - | chr6_3:93957581-93957600 | None:intergenic | 35.0% | |
| AGAAGAACCAGAACAGAATT+TGG | - | chr6_3:93957582-93957601 | None:intergenic | 35.0% | |
| !! | AAATTCTGTTCTGGTTCTTC+TGG | + | chr6_3:93957581-93957600 | Msa0966010:three_prime_UTR | 35.0% |
| ACTTGAATGTCCTGTAATCA+AGG | + | chr6_3:93957760-93957779 | Msa0966010:three_prime_UTR | 35.0% | |
| CTTGAATGTCCTGTAATCAA+GGG | + | chr6_3:93957761-93957780 | Msa0966010:three_prime_UTR | 35.0% | |
| CCATTTAAACCCTTGATTAC+AGG | - | chr6_3:93957773-93957792 | None:intergenic | 35.0% | |
| CCTGTAATCAAGGGTTTAAA+TGG | + | chr6_3:93957770-93957789 | Msa0966010:three_prime_UTR | 35.0% | |
| ! | CAACAATCACCTTCGATTTG+AGG | + | chr6_3:93953631-93953650 | Msa0966010:CDS | 40.0% |
| ATCTAACCTCGACCAATCAA+TGG | + | chr6_3:93953688-93953707 | Msa0966010:CDS | 40.0% | |
| TCTAACCTCGACCAATCAAT+GGG | + | chr6_3:93953689-93953708 | Msa0966010:CDS | 40.0% | |
| ATCAAAGTAGTAATCAGCGC+TGG | - | chr6_3:93953747-93953766 | None:intergenic | 40.0% | |
| ! | GGTTTTACAATGTCCCTGTT+TGG | + | chr6_3:93954256-93954275 | Msa0966010:intron | 40.0% |
| !! | GCCGTTTTCATAAGCTATCA+TGG | + | chr6_3:93954377-93954396 | Msa0966010:intron | 40.0% |
| AAAGCTGACAGCAATTTGGA+TGG | - | chr6_3:93954765-93954784 | None:intergenic | 40.0% | |
| GACAAAAGCTGACAGCAATT+TGG | - | chr6_3:93954769-93954788 | None:intergenic | 40.0% | |
| ! | CTTTTCATGCTTGATCTGGA+AGG | + | chr6_3:93955228-93955247 | Msa0966010:intron | 40.0% |
| ! | CTAACCTGTTTTCACATTGC+AGG | + | chr6_3:93955265-93955284 | Msa0966010:intron | 40.0% |
| CACATTGCAGGAAATGTTGA+AGG | + | chr6_3:93955277-93955296 | Msa0966010:intron | 40.0% | |
| ! | CTTTTTGTGTAGGTCGATGA+TGG | + | chr6_3:93955962-93955981 | Msa0966010:intron | 40.0% |
| GTTCATCTTTGTTCAGTCCA+TGG | + | chr6_3:93956581-93956600 | Msa0966010:intron | 40.0% | |
| !! | AAATTGATGGGCTTCTCAAC+AGG | + | chr6_3:93956726-93956745 | Msa0966010:CDS | 40.0% |
| ! | GGTTTGCTTTGTCAATAGGA+AGG | + | chr6_3:93956783-93956802 | Msa0966010:intron | 40.0% |
| AAAAAGAAAATTGGGGAGGG+GGG | + | chr6_3:93956875-93956894 | Msa0966010:intron | 40.0% | |
| TTCAACAGTCTTCCCATTTG+TGG | + | chr6_3:93957134-93957153 | Msa0966010:intron | 40.0% | |
| ACAAAGACGGAACCACAAAT+GGG | - | chr6_3:93957149-93957168 | None:intergenic | 40.0% | |
| AACAAAGACGGAACCACAAA+TGG | - | chr6_3:93957150-93957169 | None:intergenic | 40.0% | |
| !! | TATCATTTTAGTGGCGAGTG+TGG | + | chr6_3:93957206-93957225 | Msa0966010:intron | 40.0% |
| AGATGTCTTGACCATTTGTG+AGG | + | chr6_3:93957308-93957327 | Msa0966010:CDS | 40.0% | |
| GATGTCTTGACCATTTGTGA+GGG | + | chr6_3:93957309-93957328 | Msa0966010:CDS | 40.0% | |
| ATGTCTTGACCATTTGTGAG+GGG | + | chr6_3:93957310-93957329 | Msa0966010:CDS | 40.0% | |
| AGCATTATATCAACATCCCG+AGG | - | chr6_3:93957381-93957400 | None:intergenic | 40.0% | |
| TTTGTGCCCAAATTCTGTTC+TGG | + | chr6_3:93957572-93957591 | Msa0966010:three_prime_UTR | 40.0% | |
| CATCAGCATCCTCAAATCGA+AGG | - | chr6_3:93953643-93953662 | None:intergenic | 45.0% | |
| !!! | ATCAGCGCTGGTTTTGTCAT+TGG | - | chr6_3:93953735-93953754 | None:intergenic | 45.0% |
| CAACATCGGCCTATTTGCAT+AGG | - | chr6_3:93954505-93954524 | None:intergenic | 45.0% | |
| TCACTATTCTGTGCCAAAGC+AGG | + | chr6_3:93955401-93955420 | Msa0966010:CDS | 45.0% | |
| CACTATTCTGTGCCAAAGCA+GGG | + | chr6_3:93955402-93955421 | Msa0966010:CDS | 45.0% | |
| ACTATTCTGTGCCAAAGCAG+GGG | + | chr6_3:93955403-93955422 | Msa0966010:CDS | 45.0% | |
| TGCTCTTTGCACGTGACAAA+TGG | + | chr6_3:93955838-93955857 | Msa0966010:CDS | 45.0% | |
| TTGCATGTACCAGAATCTGG+TGG | + | chr6_3:93955911-93955930 | Msa0966010:intron | 45.0% | |
| AAGTGATGACCACCAGATTC+TGG | - | chr6_3:93955923-93955942 | None:intergenic | 45.0% | |
| !! | AATTTGCATGTCGGTTTGGG+AGG | - | chr6_3:93956140-93956159 | None:intergenic | 45.0% |
| CATCAAGAAGCAAGCCTTGA+TGG | + | chr6_3:93956348-93956367 | Msa0966010:CDS | 45.0% | |
| AGTTCGTTGCGATCTGATTC+TGG | - | chr6_3:93956396-93956415 | None:intergenic | 45.0% | |
| AACGAACTGTCAGCTACTCA+AGG | + | chr6_3:93956408-93956427 | Msa0966010:CDS | 45.0% | |
| CGAGCAGCAACAAGCTTAAA+AGG | - | chr6_3:93956648-93956667 | None:intergenic | 45.0% | |
| CACATGATGTGTCAGCTCAA+TGG | - | chr6_3:93956996-93957015 | None:intergenic | 45.0% | |
| !! | TACCATTTTAGTGGCGAGTG+TGG | + | chr6_3:93957174-93957193 | Msa0966010:intron | 45.0% |
| ATCCACACTCGCCACTAAAA+TGG | - | chr6_3:93957179-93957198 | None:intergenic | 45.0% | |
| TGTCTTGACCATTTGTGAGG+GGG | + | chr6_3:93957311-93957330 | Msa0966010:CDS | 45.0% | |
| AATTGTCTCCCCCTCACAAA+TGG | - | chr6_3:93957322-93957341 | None:intergenic | 45.0% | |
| ! | AATTGTAGGGAGCATGACTG+TGG | + | chr6_3:93957338-93957357 | Msa0966010:CDS | 45.0% |
| AGCAAATTGGCAGAGACTTG+AGG | - | chr6_3:93957683-93957702 | None:intergenic | 45.0% | |
| ! | AGGACATTCAAGTTCGTCTC+AGG | - | chr6_3:93957753-93957772 | None:intergenic | 45.0% |
| !!! | TAAAAAAAATCATTTTTTTT+GGG | - | chr6_3:93953822-93953841 | None:intergenic | 5.0% |
| !!! | ATAAAAAAAATCATTTTTTT+TGG | - | chr6_3:93953823-93953842 | None:intergenic | 5.0% |
| AACCTCGACCAATCAATGGG+TGG | + | chr6_3:93953692-93953711 | Msa0966010:CDS | 50.0% | |
| ! | AACCACCCATTGATTGGTCG+AGG | - | chr6_3:93953697-93953716 | None:intergenic | 50.0% |
| GGTCACAACCACCCATTGAT+TGG | - | chr6_3:93953703-93953722 | None:intergenic | 50.0% | |
| !! | GCTATCATGGAGAGCGCTTA+TGG | + | chr6_3:93954390-93954409 | Msa0966010:intron | 50.0% |
| GTAGTTCTTGATGTCGGTGC+CGG | + | chr6_3:93955365-93955384 | Msa0966010:CDS | 50.0% | |
| ! | TAGTTCTTGATGTCGGTGCC+GGG | + | chr6_3:93955366-93955385 | Msa0966010:CDS | 50.0% |
| AGTGCTCTCATATGGCTGAC+AGG | + | chr6_3:93955543-93955562 | Msa0966010:CDS | 50.0% | |
| GTGCTCTCATATGGCTGACA+GGG | + | chr6_3:93955544-93955563 | Msa0966010:CDS | 50.0% | |
| TCATATGGCTGACAGGGCAA+AGG | + | chr6_3:93955550-93955569 | Msa0966010:CDS | 50.0% | |
| CGATCAATCCCTCCACCAAA+AGG | - | chr6_3:93955658-93955677 | None:intergenic | 50.0% | |
| GTGGAGGGATTGATCGTGAA+GGG | + | chr6_3:93955662-93955681 | Msa0966010:intron | 50.0% | |
| TGGTCAACTGTGTCAACCAG+AGG | - | chr6_3:93956376-93956395 | None:intergenic | 50.0% | |
| TATTTGCAGGGCCAAGATCG+CGG | + | chr6_3:93957250-93957269 | Msa0966010:intron | 50.0% | |
| CAATGTGTACTCCGCGATCT+TGG | - | chr6_3:93957264-93957283 | None:intergenic | 50.0% | |
| CAAGATCGCGGAGTACACAT+TGG | + | chr6_3:93957262-93957281 | Msa0966010:CDS | 50.0% | |
| TGTGAGGGGGAGACAATTGT+AGG | + | chr6_3:93957324-93957343 | Msa0966010:CDS | 50.0% | |
| GTGAGGGGGAGACAATTGTA+GGG | + | chr6_3:93957325-93957344 | Msa0966010:CDS | 50.0% | |
| GCAGGTCGAGTGCTCTCATA+TGG | + | chr6_3:93955535-93955554 | Msa0966010:intron | 55.0% | |
| GGTGGAGGGATTGATCGTGA+AGG | + | chr6_3:93955661-93955680 | Msa0966010:intron | 55.0% | |
| GTCAACCAGAGGCTCCATCA+AGG | - | chr6_3:93956365-93956384 | None:intergenic | 55.0% | |
| CAGGCGATGCAATGCTTCGA+GGG | + | chr6_3:93957419-93957438 | Msa0966010:CDS | 55.0% | |
| GACATGTGCTGCCCCTGCTT+TGG | - | chr6_3:93955417-93955436 | None:intergenic | 60.0% | |
| GCAAGCCTTGATGGAGCCTC+TGG | + | chr6_3:93956357-93956376 | Msa0966010:CDS | 60.0% | |
| GCAGGCGATGCAATGCTTCG+AGG | + | chr6_3:93957418-93957437 | Msa0966010:CDS | 60.0% | |
| !! | CTTGATGTCGGTGCCGGGAC+TGG | + | chr6_3:93955371-93955390 | Msa0966010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 93953482 | 93957794 | 93953482 | ID=Msa0966010;Name=Msa0966010 |
| chr6_3 | mRNA | 93953482 | 93957794 | 93953482 | ID=Msa0966010-mRNA-1;Parent=Msa0966010;Name=Msa0966010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=87|1|1|1|0.85|0.87|8|330|383 |
| chr6_3 | exon | 93953482 | 93953796 | 93953482 | ID=Msa0966010-mRNA-1:exon:17247;Parent=Msa0966010-mRNA-1 |
| chr6_3 | exon | 93955287 | 93955442 | 93955287 | ID=Msa0966010-mRNA-1:exon:17248;Parent=Msa0966010-mRNA-1 |
| chr6_3 | exon | 93955539 | 93955602 | 93955539 | ID=Msa0966010-mRNA-1:exon:17249;Parent=Msa0966010-mRNA-1 |
| chr6_3 | exon | 93955721 | 93955863 | 93955721 | ID=Msa0966010-mRNA-1:exon:17250;Parent=Msa0966010-mRNA-1 |
| chr6_3 | exon | 93955974 | 93956061 | 93955974 | ID=Msa0966010-mRNA-1:exon:17251;Parent=Msa0966010-mRNA-1 |
| chr6_3 | exon | 93956314 | 93956429 | 93956314 | ID=Msa0966010-mRNA-1:exon:17252;Parent=Msa0966010-mRNA-1 |
| chr6_3 | exon | 93956597 | 93956747 | 93956597 | ID=Msa0966010-mRNA-1:exon:17253;Parent=Msa0966010-mRNA-1 |
| chr6_3 | exon | 93957259 | 93957794 | 93957259 | ID=Msa0966010-mRNA-1:exon:17254;Parent=Msa0966010-mRNA-1 |
| chr6_3 | five_prime_UTR | 93953482 | 93953568 | 93953482 | ID=Msa0966010-mRNA-1:five_prime_utr;Parent=Msa0966010-mRNA-1 |
| chr6_3 | CDS | 93953569 | 93953796 | 93953569 | ID=Msa0966010-mRNA-1:cds;Parent=Msa0966010-mRNA-1 |
| chr6_3 | CDS | 93955287 | 93955442 | 93955287 | ID=Msa0966010-mRNA-1:cds;Parent=Msa0966010-mRNA-1 |
| chr6_3 | CDS | 93955539 | 93955602 | 93955539 | ID=Msa0966010-mRNA-1:cds;Parent=Msa0966010-mRNA-1 |
| chr6_3 | CDS | 93955721 | 93955863 | 93955721 | ID=Msa0966010-mRNA-1:cds;Parent=Msa0966010-mRNA-1 |
| chr6_3 | CDS | 93955974 | 93956061 | 93955974 | ID=Msa0966010-mRNA-1:cds;Parent=Msa0966010-mRNA-1 |
| chr6_3 | CDS | 93956314 | 93956429 | 93956314 | ID=Msa0966010-mRNA-1:cds;Parent=Msa0966010-mRNA-1 |
| chr6_3 | CDS | 93956597 | 93956747 | 93956597 | ID=Msa0966010-mRNA-1:cds;Parent=Msa0966010-mRNA-1 |
| chr6_3 | CDS | 93957259 | 93957464 | 93957259 | ID=Msa0966010-mRNA-1:cds;Parent=Msa0966010-mRNA-1 |
| chr6_3 | three_prime_UTR | 93957465 | 93957794 | 93957465 | ID=Msa0966010-mRNA-1:three_prime_utr;Parent=Msa0966010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
