Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859670 | XP_017430678.1 | 68.343 | 537 | 128 | 2 | 1 | 495 | 276 | 812 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859670 | sp|Q9C895|BRE1B_ARATH | 58.454 | 207 | 86 | 0 | 289 | 495 | 689 | 895 | 9.50e-76 | 259 |
| Msa0859670 | sp|Q9C895|BRE1B_ARATH | 52.273 | 264 | 125 | 1 | 1 | 264 | 295 | 557 | 1.68e-71 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859670 | A0A072UR29 | 95.053 | 283 | 14 | 0 | 1 | 283 | 275 | 557 | 0.0 | 542 |
| Msa0859670 | A0A072UR29 | 95.652 | 207 | 9 | 0 | 289 | 495 | 669 | 875 | 5.63e-130 | 408 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004920 | Msa0859670 | 0.810370 | 1.192352e-50 | -8.615850e-47 |
| Msa0621890 | Msa0859670 | 0.809955 | 1.465038e-50 | -8.615850e-47 |
| Msa0638280 | Msa0859670 | 0.816869 | 4.427646e-52 | -8.615850e-47 |
| Msa0638320 | Msa0859670 | 0.834129 | 3.582267e-56 | -8.615850e-47 |
| Msa0667890 | Msa0859670 | 0.804885 | 1.742628e-49 | -8.615850e-47 |
| Msa0677270 | Msa0859670 | 0.826866 | 2.143832e-54 | -8.615850e-47 |
| Msa0722930 | Msa0859670 | 0.823598 | 1.270779e-53 | -8.615850e-47 |
| Msa0723140 | Msa0859670 | 0.822906 | 1.843013e-53 | -8.615850e-47 |
| Msa0739120 | Msa0859670 | 0.826367 | 2.819758e-54 | -8.615850e-47 |
| Msa0788710 | Msa0859670 | 0.877354 | 6.721297e-69 | -8.615850e-47 |
| Msa0371570 | Msa0859670 | 0.800450 | 1.432940e-48 | -8.615850e-47 |
| Msa0464900 | Msa0859670 | 0.815483 | 9.032640e-52 | -8.615850e-47 |
| Msa0242480 | Msa0859670 | 0.815801 | 7.675642e-52 | -8.615850e-47 |
| Msa0270270 | Msa0859670 | 0.805113 | 1.561483e-49 | -8.615850e-47 |
| Msa0311860 | Msa0859670 | 0.811070 | 8.413224e-51 | -8.615850e-47 |
| Msa0335040 | Msa0859670 | 0.807949 | 3.936743e-50 | -8.615850e-47 |
| Msa0517330 | Msa0859670 | 0.811806 | 5.822088e-51 | -8.615850e-47 |
| Msa0843280 | Msa0859670 | 0.815322 | 9.811273e-52 | -8.615850e-47 |
| Msa0859670 | Msa0870620 | 0.801925 | 7.153643e-49 | -8.615850e-47 |
| Msa0859670 | Msa0944770 | 0.815981 | 6.996873e-52 | -8.615850e-47 |
| Msa0859670 | Msa1000020 | 0.801620 | 8.261152e-49 | -8.615850e-47 |
| Msa0859670 | Msa1037700 | -0.826866 | 2.144031e-54 | -8.615850e-47 |
| Msa0859670 | Msa1072350 | 0.806127 | 9.564836e-50 | -8.615850e-47 |
| Msa0859670 | Msa1082500 | 0.814188 | 1.749294e-51 | -8.615850e-47 |
| Msa0859670 | Msa1098560 | 0.807065 | 6.064420e-50 | -8.615850e-47 |
| Msa0859670 | Msa1130210 | -0.802073 | 6.670989e-49 | -8.615850e-47 |
| Msa0859670 | Msa1133710 | 0.802071 | 6.674968e-49 | -8.615850e-47 |
| Msa0859670 | Msa1203250 | 0.801078 | 1.066760e-48 | -8.615850e-47 |
| Msa0859670 | Msa1206020 | 0.803934 | 2.749930e-49 | -8.615850e-47 |
| Msa0859670 | Msa1228210 | 0.832309 | 1.017283e-55 | -8.615850e-47 |
| Msa0859670 | Msa1233500 | 0.814644 | 1.386786e-51 | -8.615850e-47 |
| Msa0859670 | Msa1271280 | 0.803078 | 4.139282e-49 | -8.615850e-47 |
| Msa0859670 | Msa1271290 | 0.804421 | 2.177809e-49 | -8.615850e-47 |
| Msa0859670 | Msa1271300 | 0.809426 | 1.903761e-50 | -8.615850e-47 |
| Msa0859670 | Msa1308380 | 0.811358 | 7.286490e-51 | -8.615850e-47 |
| Msa0859670 | Msa1342430 | 0.816643 | 4.975622e-52 | -8.615850e-47 |
| Msa0859670 | Msa1423450 | 0.818754 | 1.661803e-52 | -8.615850e-47 |
| Msa0859670 | Msa1454120 | 0.801612 | 8.295577e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859670 | MtrunA17_Chr5g0438781 | 95.053 | 283 | 14 | 0 | 1 | 283 | 275 | 557 | 0.0 | 542 |
| Msa0859670 | MtrunA17_Chr5g0438781 | 95.652 | 207 | 9 | 0 | 289 | 495 | 669 | 875 | 1.08e-133 | 408 |
| Msa0859670 | MtrunA17_Chr1g0182391 | 84.806 | 283 | 43 | 0 | 1 | 283 | 275 | 557 | 1.01e-161 | 481 |
| Msa0859670 | MtrunA17_Chr1g0182391 | 92.754 | 207 | 15 | 0 | 289 | 495 | 669 | 875 | 5.08e-128 | 394 |
| Msa0859670 | MtrunA17_Chr3g0102941 | 73.684 | 152 | 23 | 3 | 332 | 481 | 4 | 140 | 2.50e-63 | 203 |
| Msa0859670 | MtrunA17_Chr5g0427091 | 75.862 | 87 | 20 | 1 | 1 | 86 | 1 | 87 | 7.99e-35 | 127 |
| Msa0859670 | MtrunA17_Chr8g0365251 | 83.607 | 61 | 10 | 0 | 1 | 61 | 25 | 85 | 2.63e-27 | 105 |
| Msa0859670 | MtrunA17_Chr7g0232251 | 29.167 | 264 | 186 | 1 | 16 | 278 | 284 | 547 | 4.67e-25 | 109 |
| Msa0859670 | MtrunA17_Chr7g0232251 | 26.442 | 208 | 152 | 1 | 289 | 495 | 665 | 872 | 1.07e-20 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859670 | AT1G55250.2 | 58.454 | 207 | 86 | 0 | 289 | 495 | 172 | 378 | 7.01e-81 | 257 |
| Msa0859670 | AT1G55250.5 | 58.454 | 207 | 86 | 0 | 289 | 495 | 670 | 876 | 4.85e-77 | 259 |
| Msa0859670 | AT1G55250.5 | 52.273 | 264 | 125 | 1 | 1 | 264 | 276 | 538 | 1.60e-72 | 247 |
| Msa0859670 | AT1G55250.4 | 54.751 | 221 | 86 | 1 | 289 | 495 | 172 | 392 | 6.28e-77 | 247 |
| Msa0859670 | AT1G55250.1 | 58.454 | 207 | 86 | 0 | 289 | 495 | 689 | 895 | 9.65e-77 | 259 |
| Msa0859670 | AT1G55250.1 | 52.273 | 264 | 125 | 1 | 1 | 264 | 295 | 557 | 1.70e-72 | 247 |
| Msa0859670 | AT1G55250.3 | 54.751 | 221 | 86 | 1 | 289 | 495 | 674 | 894 | 2.24e-73 | 249 |
| Msa0859670 | AT1G55250.3 | 51.852 | 270 | 121 | 4 | 1 | 264 | 276 | 542 | 1.22e-69 | 239 |
| Msa0859670 | AT2G44950.1 | 31.034 | 290 | 186 | 4 | 207 | 495 | 597 | 873 | 1.65e-32 | 132 |
| Msa0859670 | AT2G44950.1 | 25.271 | 277 | 207 | 0 | 2 | 278 | 272 | 548 | 1.32e-19 | 93.2 |
| Msa0859670 | AT2G44950.2 | 25.271 | 277 | 207 | 0 | 2 | 278 | 272 | 548 | 3.18e-19 | 91.7 |
Find 90 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGAATTGAATTCTAAAT+TGG | 0.246983 | 5_4:+58116911 | Msa0859670:CDS |
| CAGAATTCAGCTCAGCAATT+TGG | 0.247609 | 5_4:-58120058 | None:intergenic |
| TCAACATTGGATTGCTGAAT+TGG | 0.266671 | 5_4:+58116694 | Msa0859670:CDS |
| GTTACAGATTGAAAAGTTAC+AGG | 0.298097 | 5_4:+58118217 | Msa0859670:intron |
| TCAGGAGTTAGAATTTGTTT+TGG | 0.321414 | 5_4:+58118247 | Msa0859670:CDS |
| TTCCCACCTGGCAAACTCTA+AGG | 0.353582 | 5_4:-58119263 | None:intergenic |
| AAAGTTACAGGAGGAGAATC+AGG | 0.371139 | 5_4:+58118229 | Msa0859670:CDS |
| AATCTAAATCTTTACAGATC+TGG | 0.376738 | 5_4:-58121672 | None:intergenic |
| CATCCCCATTTCTTTAGATA+AGG | 0.377185 | 5_4:-58117190 | None:intergenic |
| CAGGACTAACGTTGCAAAAC+GGG | 0.379048 | 5_4:+58116887 | Msa0859670:CDS |
| GCTCTCTCTGCAGGCTTCTC+AGG | 0.381182 | 5_4:-58116286 | None:intergenic |
| CAAAGGATCAACTTCAACAT+TGG | 0.382751 | 5_4:+58116681 | Msa0859670:CDS |
| TGCAAACAAATGTGCTGAAC+AGG | 0.382951 | 5_4:+58117923 | Msa0859670:CDS |
| AAAGATATCAAAGCTGAGTT+TGG | 0.385405 | 5_4:+58117153 | Msa0859670:CDS |
| TTCAGCCTTATCTAAAGAAA+TGG | 0.386599 | 5_4:+58117185 | Msa0859670:CDS |
| AGAGTTTGCCAGGTGGGAAT+TGG | 0.397987 | 5_4:+58119267 | Msa0859670:CDS |
| AAAGCAATTTGAGGAACTTC+AGG | 0.401444 | 5_4:+58116495 | Msa0859670:CDS |
| CACTTCCCGAGTATACTCTT+TGG | 0.403272 | 5_4:+58116658 | Msa0859670:CDS |
| CCTGCCTGTGGAACAGCATT+TGG | 0.404398 | 5_4:+58120603 | Msa0859670:CDS |
| TCTTCTACTCTCTTCAAGTT+CGG | 0.410715 | 5_4:-58116179 | None:intergenic |
| TACAGATCTGGTTGTGGATG+CGG | 0.419490 | 5_4:-58121660 | None:intergenic |
| TCAGCCTTATCTAAAGAAAT+GGG | 0.420197 | 5_4:+58117186 | Msa0859670:CDS |
| GAAGCTTGAGGAAGAACTAA+TGG | 0.422228 | 5_4:+58120025 | Msa0859670:CDS |
| ACACAGACCAGTATCTTGTT+TGG | 0.429741 | 5_4:-58117054 | None:intergenic |
| TTTCTGAGCTTCAAGATTCA+CGG | 0.429973 | 5_4:+58116452 | Msa0859670:CDS |
| CAGCCGCCTTAGAGTTTGCC+AGG | 0.439108 | 5_4:+58119257 | Msa0859670:CDS |
| CAAATGTGCTGAACAGGATT+CGG | 0.450852 | 5_4:+58117929 | Msa0859670:CDS |
| TCAAGATTTCTTTGTATGCA+TGG | 0.451174 | 5_4:-58120561 | None:intergenic |
| AATATTGACAAAGCAATTTG+AGG | 0.451416 | 5_4:+58116486 | Msa0859670:CDS |
| ATCTAAAGAAATGGGGATGA+TGG | 0.454064 | 5_4:+58117194 | Msa0859670:CDS |
| AATTACAAATAGTGAAGAAC+AGG | 0.462184 | 5_4:+58119079 | Msa0859670:CDS |
| GTTCAGCACATTTGTTTGCA+AGG | 0.462913 | 5_4:-58117920 | None:intergenic |
| AATGCAAAAGGATGCAGCTA+TGG | 0.467843 | 5_4:+58116219 | Msa0859670:exon |
| TCCGTTCACTGCATCAGCAT+TGG | 0.477019 | 5_4:-58116254 | None:intergenic |
| TTATATCATGCAGGAGTTCA+CGG | 0.493537 | 5_4:+58120000 | Msa0859670:intron |
| CGCCTTAGAGTTTGCCAGGT+GGG | 0.494648 | 5_4:+58119261 | Msa0859670:CDS |
| ATTTGTTTGCAAGGCTCTTG+AGG | 0.497426 | 5_4:-58117911 | None:intergenic |
| TTCCACAGGCAGGACATTTG+CGG | 0.497983 | 5_4:-58120593 | None:intergenic |
| GAAGCCTGCAGAGAGAGCTA+TGG | 0.498135 | 5_4:+58116291 | Msa0859670:CDS |
| GCAGGACTAACGTTGCAAAA+CGG | 0.500427 | 5_4:+58116886 | Msa0859670:CDS |
| AGGCAGGACATTTGCGGTGA+CGG | 0.501630 | 5_4:-58120587 | None:intergenic |
| CTGTCCAAATGCTGTTCCAC+AGG | 0.503225 | 5_4:-58120607 | None:intergenic |
| CCTTTGCCAAAGAGTATACT+CGG | 0.508295 | 5_4:-58116664 | None:intergenic |
| CCAAATGCTGTTCCACAGGC+AGG | 0.515641 | 5_4:-58120603 | None:intergenic |
| GTTCACTGCATCAGCATTGG+AGG | 0.516207 | 5_4:-58116251 | None:intergenic |
| GCCTGGAGGATTATCAGAAA+AGG | 0.516683 | 5_4:+58118279 | Msa0859670:CDS |
| GAAGAGGCCAAACAAGATAC+TGG | 0.517357 | 5_4:+58117047 | Msa0859670:CDS |
| AAAAGGAATTGGATAGTGAA+AGG | 0.522583 | 5_4:+58119383 | Msa0859670:CDS |
| ATCATTGACAGAGTCTCTGC+AGG | 0.528509 | 5_4:+58116727 | Msa0859670:CDS |
| AGTCAGTCTGAAAATGCAAA+AGG | 0.529585 | 5_4:+58116207 | Msa0859670:exon |
| TGCAAAAGTGTATTAATGAA+AGG | 0.535858 | 5_4:+58117003 | Msa0859670:CDS |
| AATCTTTACAGATCTGGTTG+TGG | 0.537356 | 5_4:-58121666 | None:intergenic |
| AAGCCTGCAGAGAGAGCTAT+GGG | 0.539173 | 5_4:+58116292 | Msa0859670:CDS |
| AAACCCATAGCTCTCTCTGC+AGG | 0.543797 | 5_4:-58116295 | None:intergenic |
| ATGCAAAAGGATGCAGCTAT+GGG | 0.546927 | 5_4:+58116220 | Msa0859670:CDS |
| TCCTAGAGTCAGAAATGTCA+TGG | 0.550226 | 5_4:-58116959 | None:intergenic |
| GGAATTGGCAGATGCTGAGA+AGG | 0.550271 | 5_4:+58119282 | Msa0859670:CDS |
| CAAAGCTGAGTTTGGTGTGA+TGG | 0.562082 | 5_4:+58117161 | Msa0859670:CDS |
| TCCAATGCTGATGCAGTGAA+CGG | 0.564453 | 5_4:+58116253 | Msa0859670:CDS |
| AGCATCTGCCAATTCCCACC+TGG | 0.566723 | 5_4:-58119275 | None:intergenic |
| TCCATGACATTTCTGACTCT+AGG | 0.566902 | 5_4:+58116958 | Msa0859670:CDS |
| TAACGTTGCAAAACGGGAGA+AGG | 0.569108 | 5_4:+58116893 | Msa0859670:CDS |
| TTCAATTGAATTCTTCAACT+CGG | 0.577121 | 5_4:-58116320 | None:intergenic |
| CCGAGTATACTCTTTGGCAA+AGG | 0.579298 | 5_4:+58116664 | Msa0859670:CDS |
| TCTTGAAATCAAGATGGAAG+AGG | 0.579606 | 5_4:+58117031 | Msa0859670:CDS |
| AATAAAGTCGTCAAAAGCAA+TGG | 0.585648 | 5_4:+58117953 | Msa0859670:CDS |
| GAATGATCTTGAAATCAAGA+TGG | 0.585926 | 5_4:+58117025 | Msa0859670:CDS |
| CGCTAAGAGAGAAATTGAGT+GGG | 0.598649 | 5_4:+58117283 | Msa0859670:CDS |
| GAATTCAATTGAAGAAGCGA+AGG | 0.600369 | 5_4:+58116330 | Msa0859670:CDS |
| TGGAAACACAGTTGAAGCGA+TGG | 0.602141 | 5_4:+58117214 | Msa0859670:CDS |
| TGGAGTCTGCGGTTAATGCA+AGG | 0.604681 | 5_4:+58116931 | Msa0859670:CDS |
| CGAGCAGATTCAGAAAGATG+TGG | 0.606867 | 5_4:+58119351 | Msa0859670:CDS |
| TCGCTAAGAGAGAAATTGAG+TGG | 0.608930 | 5_4:+58117282 | Msa0859670:CDS |
| CACCGCAAATGTCCTGCCTG+TGG | 0.609399 | 5_4:+58120591 | Msa0859670:CDS |
| CTGTTCTGACCGTCCAAAGG+AGG | 0.610548 | 5_4:+58120154 | Msa0859670:CDS |
| GAATTCTAAATTGGAGTCTG+CGG | 0.618680 | 5_4:+58116920 | Msa0859670:CDS |
| CTTTGGACGGTCAGAACAGA+CGG | 0.621473 | 5_4:-58120150 | None:intergenic |
| AAGAGAGAAATTGAGTGGGA+AGG | 0.622883 | 5_4:+58117287 | Msa0859670:CDS |
| AGGAGAGTTTGACGAAATCG+TGG | 0.625770 | 5_4:+58116156 | None:intergenic |
| CGTCTGTTCTGACCGTCCAA+AGG | 0.628492 | 5_4:+58120151 | Msa0859670:CDS |
| GAGTTCACGGAAGAAGCTTG+AGG | 0.633563 | 5_4:+58120013 | Msa0859670:CDS |
| TTTGGACATGTATGGCCTGG+AGG | 0.642076 | 5_4:+58118265 | Msa0859670:CDS |
| CAGCCTTATCTAAAGAAATG+GGG | 0.644025 | 5_4:+58117187 | Msa0859670:CDS |
| ACAGATTGAAAAGTTACAGG+AGG | 0.653733 | 5_4:+58118220 | Msa0859670:intron |
| GATCTGAAGTTGTTCAGTAG+TGG | 0.664804 | 5_4:+58118308 | Msa0859670:CDS |
| GCTTGTATCAGAAAGCGTGA+AGG | 0.670954 | 5_4:+58118962 | Msa0859670:intron |
| CTTTGCCAAAGAGTATACTC+GGG | 0.675113 | 5_4:-58116663 | None:intergenic |
| CAAACTCTAAGGCGGCTGCG+AGG | 0.683577 | 5_4:-58119252 | None:intergenic |
| CCGCCTTAGAGTTTGCCAGG+TGG | 0.688256 | 5_4:+58119260 | Msa0859670:CDS |
| CCACCTGGCAAACTCTAAGG+CGG | 0.716860 | 5_4:-58119260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTATATAAATCTTCTT+TGG | - | chr5_4:58118653-58118672 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGTATTTGTATT+TGG | + | chr5_4:58120301-58120320 | Msa0859670:intron | 10.0% |
| !! | ATAATAAGTTAATAAGTTAT+TGG | + | chr5_4:58120692-58120711 | Msa0859670:intron | 10.0% |
| !! | TAATAAGTTAATAAGTTATT+GGG | + | chr5_4:58120693-58120712 | Msa0859670:intron | 10.0% |
| !!! | TTCTTTCCAAATAAAATTTT+AGG | + | chr5_4:58116860-58116879 | Msa0859670:intron | 15.0% |
| !! | ATTTAATATTGTAAGAAATG+AGG | - | chr5_4:58117121-58117140 | None:intergenic | 15.0% |
| !! | TTACAATATTAAATGTTTCA+GGG | + | chr5_4:58117127-58117146 | Msa0859670:intron | 15.0% |
| !! | TCTGAAAACATATTTATAAT+TGG | + | chr5_4:58117651-58117670 | Msa0859670:intron | 15.0% |
| !! | AAAACATATTTATAATTGGT+GGG | + | chr5_4:58117655-58117674 | Msa0859670:intron | 15.0% |
| !! | TTAATACTATTTAAGCATTA+AGG | + | chr5_4:58117853-58117872 | Msa0859670:intron | 15.0% |
| !! | TACAAATTGTATTATACAAT+AGG | + | chr5_4:58118539-58118558 | Msa0859670:intron | 15.0% |
| !! | ATTATACAATAGGTTTATAT+AGG | + | chr5_4:58118549-58118568 | Msa0859670:intron | 15.0% |
| !! | ACAATAAAAAGTTATTTACA+AGG | + | chr5_4:58118583-58118602 | Msa0859670:intron | 15.0% |
| !! | TCTAAATAAATAATTCCATT+TGG | + | chr5_4:58118896-58118915 | Msa0859670:intron | 15.0% |
| !! | ATAATTAGATATATCAAGAT+TGG | + | chr5_4:58121114-58121133 | Msa0859670:intron | 15.0% |
| !! | TTTGGAAAGAATATGTAAAA+GGG | - | chr5_4:58116851-58116870 | None:intergenic | 20.0% |
| !! | ATTTGGAAAGAATATGTAAA+AGG | - | chr5_4:58116852-58116871 | None:intergenic | 20.0% |
| !! | CTTACAATATTAAATGTTTC+AGG | + | chr5_4:58117126-58117145 | Msa0859670:intron | 20.0% |
| !! | GAAAACATATTTATAATTGG+TGG | + | chr5_4:58117654-58117673 | Msa0859670:intron | 20.0% |
| !! | TTTAGAAGGTAAAATATAAG+AGG | - | chr5_4:58118016-58118035 | None:intergenic | 20.0% |
| !! | TAATTTCAAACAACTCATTA+AGG | + | chr5_4:58118188-58118207 | Msa0859670:intron | 20.0% |
| !! | AGTCTAGTTAATGTAATTAT+TGG | + | chr5_4:58118339-58118358 | Msa0859670:intron | 20.0% |
| !!! | GTTGATTTTTACTTTTAGAA+AGG | + | chr5_4:58118797-58118816 | Msa0859670:intron | 20.0% |
| !! | AAAATAAGACATATTAGTAG+GGG | - | chr5_4:58119128-58119147 | None:intergenic | 20.0% |
| !! | CAAAATAAGACATATTAGTA+GGG | - | chr5_4:58119129-58119148 | None:intergenic | 20.0% |
| !!! | TAAACATGTAGATTTTAAGA+TGG | + | chr5_4:58119726-58119745 | Msa0859670:intron | 20.0% |
| !! | TAAGAGTTTAATATGGTATT+TGG | + | chr5_4:58120499-58120518 | Msa0859670:intron | 20.0% |
| !! | CAAACAAAAAACAATGAAAA+AGG | - | chr5_4:58120855-58120874 | None:intergenic | 20.0% |
| !!! | TCTTGATAATACTTTTTGAT+AGG | + | chr5_4:58120876-58120895 | Msa0859670:intron | 20.0% |
| !! | TCTAAAAATTGATTGCTTAT+TGG | - | chr5_4:58120911-58120930 | None:intergenic | 20.0% |
| !! | AACGTTATTTGAAAATAATC+TGG | + | chr5_4:58121011-58121030 | Msa0859670:intron | 20.0% |
| !! | ACGTTATTTGAAAATAATCT+GGG | + | chr5_4:58121012-58121031 | Msa0859670:intron | 20.0% |
| !!! | ACTTTTCAATTAATGGTTAA+TGG | + | chr5_4:58121091-58121110 | Msa0859670:intron | 20.0% |
| !! | CTAATAACTACAAAGTAATT+CGG | + | chr5_4:58121613-58121632 | Msa0859670:intron | 20.0% |
| ! | TTCAATTGAATTCTTCAACT+CGG | - | chr5_4:58116323-58116342 | None:intergenic | 25.0% |
| ! | AATATTGACAAAGCAATTTG+AGG | + | chr5_4:58116486-58116505 | Msa0859670:CDS | 25.0% |
| ! | TAAATTTGAACTATCTGCAA+CGG | + | chr5_4:58116522-58116541 | Msa0859670:intron | 25.0% |
| !! | CATGAAAAGATACTTTTAGA+TGG | - | chr5_4:58116594-58116613 | None:intergenic | 25.0% |
| !! | TATCATCATTTAGTTCATTC+TGG | - | chr5_4:58116628-58116647 | None:intergenic | 25.0% |
| ! | TTGGAAAGAATATGTAAAAG+GGG | - | chr5_4:58116850-58116869 | None:intergenic | 25.0% |
| !!! | TGCTAGCCTAAAATTTTATT+TGG | - | chr5_4:58116869-58116888 | None:intergenic | 25.0% |
| !! | AAATAAAATTTTAGGCTAGC+AGG | + | chr5_4:58116868-58116887 | Msa0859670:intron | 25.0% |
| ! | GAAGGAATTGAATTCTAAAT+TGG | + | chr5_4:58116911-58116930 | Msa0859670:CDS | 25.0% |
| !! | TGCAAAAGTGTATTAATGAA+AGG | + | chr5_4:58117003-58117022 | Msa0859670:CDS | 25.0% |
| ! | TAAAAGACTTATCACAAAGA+AGG | - | chr5_4:58117349-58117368 | None:intergenic | 25.0% |
| !!! | GTTACTTTTTCATAGTATAG+AGG | + | chr5_4:58117413-58117432 | Msa0859670:intron | 25.0% |
| ! | AAAGTCACAATAAATGTTAG+TGG | + | chr5_4:58117517-58117536 | Msa0859670:intron | 25.0% |
| ! | AAAATGAATTCCAGTTTAGT+AGG | - | chr5_4:58117741-58117760 | None:intergenic | 25.0% |
| ! | GCTTAAATAGTATTAACTCA+AGG | - | chr5_4:58117849-58117868 | None:intergenic | 25.0% |
| ! | TGGTAAGTTTCTTTATATGT+AGG | + | chr5_4:58117973-58117992 | Msa0859670:intron | 25.0% |
| !! | CTTTTCATTACTTATTCCAA+CGG | - | chr5_4:58118409-58118428 | None:intergenic | 25.0% |
| !! | TTTTATTAACATCTAACCAC+AGG | - | chr5_4:58118441-58118460 | None:intergenic | 25.0% |
| !! | ATAAATCTTCTTTGGTAGTT+TGG | - | chr5_4:58118645-58118664 | None:intergenic | 25.0% |
| ! | GGTAACATTAATTCTATCAT+GGG | - | chr5_4:58118693-58118712 | None:intergenic | 25.0% |
| ! | TGGTAACATTAATTCTATCA+TGG | - | chr5_4:58118694-58118713 | None:intergenic | 25.0% |
| ! | TCTAAAAGTAAAAATCAACC+AGG | - | chr5_4:58118796-58118815 | None:intergenic | 25.0% |
| !!! | TAAATAATTCCATTTGGTGT+TGG | + | chr5_4:58118902-58118921 | Msa0859670:intron | 25.0% |
| ! | AATTACAAATAGTGAAGAAC+AGG | + | chr5_4:58119079-58119098 | Msa0859670:CDS | 25.0% |
| ! | AAATAAGACATATTAGTAGG+GGG | - | chr5_4:58119127-58119146 | None:intergenic | 25.0% |
| ! | GCAAAATAAGACATATTAGT+AGG | - | chr5_4:58119130-58119149 | None:intergenic | 25.0% |
| ! | AGTAGTTTAAAAATCTGTTC+TGG | - | chr5_4:58119445-58119464 | None:intergenic | 25.0% |
| ! | AACATAAAGAAAGTAGAGTT+TGG | + | chr5_4:58119702-58119721 | Msa0859670:intron | 25.0% |
| !! | ATGGATCAGTTTGATATTTT+GGG | - | chr5_4:58119766-58119785 | None:intergenic | 25.0% |
| !!! | AACTACAGTTCTTACTTTTA+TGG | + | chr5_4:58120198-58120217 | Msa0859670:intron | 25.0% |
| !! | CAAATTAACTTGAGATTGTT+TGG | + | chr5_4:58120225-58120244 | Msa0859670:intron | 25.0% |
| ! | TAAGCTAACAACATTTGAAT+AGG | - | chr5_4:58120352-58120371 | None:intergenic | 25.0% |
| ! | CATTGTCTAAGAGTTTAATA+TGG | + | chr5_4:58120492-58120511 | Msa0859670:intron | 25.0% |
| ! | GTTACCATTAATTAACTTTC+AGG | + | chr5_4:58120945-58120964 | Msa0859670:intron | 25.0% |
| ! | CAATTAAACTATTTCGTTGT+CGG | - | chr5_4:58120987-58121006 | None:intergenic | 25.0% |
| !! | TGGATTAAAAGGTTTAAAAC+AGG | + | chr5_4:58121387-58121406 | Msa0859670:intron | 25.0% |
| !!! | TTCATTGATATGTGCTTTTT+GGG | - | chr5_4:58121581-58121600 | None:intergenic | 25.0% |
| !! | TTTCATTGATATGTGCTTTT+TGG | - | chr5_4:58121582-58121601 | None:intergenic | 25.0% |
| ! | CGAATTACTTTGTAGTTATT+AGG | - | chr5_4:58121615-58121634 | None:intergenic | 25.0% |
| TTGACAAATGAATGACAGAA+GGG | - | chr5_4:58116376-58116395 | None:intergenic | 30.0% | |
| ATTGACAAATGAATGACAGA+AGG | - | chr5_4:58116377-58116396 | None:intergenic | 30.0% | |
| GAATGATCTTGAAATCAAGA+TGG | + | chr5_4:58117025-58117044 | Msa0859670:CDS | 30.0% | |
| ATTTAGATTTGCAGTGTGTT+TGG | + | chr5_4:58117091-58117110 | Msa0859670:intron | 30.0% | |
| AAAGATATCAAAGCTGAGTT+TGG | + | chr5_4:58117153-58117172 | Msa0859670:CDS | 30.0% | |
| ! | TTCAGCCTTATCTAAAGAAA+TGG | + | chr5_4:58117185-58117204 | Msa0859670:CDS | 30.0% |
| ! | TCAGCCTTATCTAAAGAAAT+GGG | + | chr5_4:58117186-58117205 | Msa0859670:CDS | 30.0% |
| AGGTGAGAAAGAAAATGAAA+TGG | - | chr5_4:58117329-58117348 | None:intergenic | 30.0% | |
| !! | CTTTTTCATAGTATAGAGGT+TGG | + | chr5_4:58117417-58117436 | Msa0859670:intron | 30.0% |
| TCACTCAAATGATAGTAGTT+TGG | + | chr5_4:58117492-58117511 | Msa0859670:intron | 30.0% | |
| ! | TTTGAAGTTACCTACTAAAC+TGG | + | chr5_4:58117728-58117747 | Msa0859670:intron | 30.0% |
| TGAAGTCGTTAAATTCAAAG+AGG | - | chr5_4:58117775-58117794 | None:intergenic | 30.0% | |
| AACGACTTCACAAATTATGT+TGG | + | chr5_4:58117785-58117804 | Msa0859670:intron | 30.0% | |
| AATAAAGTCGTCAAAAGCAA+TGG | + | chr5_4:58117953-58117972 | Msa0859670:CDS | 30.0% | |
| !! | GACATGCTCTAAAATTTAGA+AGG | - | chr5_4:58118030-58118049 | None:intergenic | 30.0% |
| ATGCAAAACACAACTAACAA+AGG | - | chr5_4:58118091-58118110 | None:intergenic | 30.0% | |
| CAGATAATGTTTGAGAATCA+TGG | - | chr5_4:58118135-58118154 | None:intergenic | 30.0% | |
| ! | TATCTGCATTCTGATTTTAG+AGG | + | chr5_4:58118149-58118168 | Msa0859670:intron | 30.0% |
| GAAATTAGAGACAATCTTGA+AGG | - | chr5_4:58118175-58118194 | None:intergenic | 30.0% | |
| GTTACAGATTGAAAAGTTAC+AGG | + | chr5_4:58118217-58118236 | Msa0859670:intron | 30.0% | |
| !! | TCAGGAGTTAGAATTTGTTT+TGG | + | chr5_4:58118247-58118266 | Msa0859670:CDS | 30.0% |
| !!! | GAATTTGTTTTGGACATGTA+TGG | + | chr5_4:58118257-58118276 | Msa0859670:CDS | 30.0% |
| TCGTTATTCTATGTTGTGTT+TGG | + | chr5_4:58118364-58118383 | Msa0859670:intron | 30.0% | |
| CGTTATTCTATGTTGTGTTT+GGG | + | chr5_4:58118365-58118384 | Msa0859670:intron | 30.0% | |
| !! | CTTATTCCAACGGATTAATT+CGG | - | chr5_4:58118399-58118418 | None:intergenic | 30.0% |
| ! | AAAATTGATTCTCGCAGATA+TGG | - | chr5_4:58118714-58118733 | None:intergenic | 30.0% |
| ! | ATATCTGCGAGAATCAATTT+TGG | + | chr5_4:58118713-58118732 | Msa0859670:intron | 30.0% |
| AAAATAAATTATCAGCTGGC+TGG | - | chr5_4:58118740-58118759 | None:intergenic | 30.0% | |
| ! | AGCCAGCTGATAATTTATTT+TGG | + | chr5_4:58118739-58118758 | Msa0859670:intron | 30.0% |
| CACCAAAATAAATTATCAGC+TGG | - | chr5_4:58118744-58118763 | None:intergenic | 30.0% | |
| !!! | GCTGATAATTTATTTTGGTG+AGG | + | chr5_4:58118744-58118763 | Msa0859670:intron | 30.0% |
| CTGAGAAAATAGAATTGTCA+AGG | - | chr5_4:58118772-58118791 | None:intergenic | 30.0% | |
| AAAAGGAATTGGATAGTGAA+AGG | + | chr5_4:58119383-58119402 | Msa0859670:CDS | 30.0% | |
| !!! | TGAAAGGTATTTTTCTCTCT+TGG | + | chr5_4:58119399-58119418 | Msa0859670:intron | 30.0% |
| CATAAGTTTGTGTAAACTGA+GGG | + | chr5_4:58119533-58119552 | Msa0859670:intron | 30.0% | |
| ATAAGTTTGTGTAAACTGAG+GGG | + | chr5_4:58119534-58119553 | Msa0859670:intron | 30.0% | |
| ! | GATGGATCAGTTTGATATTT+TGG | - | chr5_4:58119767-58119786 | None:intergenic | 30.0% |
| ! | AAGAGGTATATCTCAAAAGA+TGG | - | chr5_4:58119785-58119804 | None:intergenic | 30.0% |
| AATGTTATGCATCCATGAAA+TGG | + | chr5_4:58119911-58119930 | Msa0859670:intron | 30.0% | |
| !! | ATCCATGAAATGGTTGATTT+TGG | + | chr5_4:58119921-58119940 | Msa0859670:intron | 30.0% |
| TTCCAAAATCAACCATTTCA+TGG | - | chr5_4:58119926-58119945 | None:intergenic | 30.0% | |
| !!! | TTGTTGTACTGCAGTTTTTT+TGG | - | chr5_4:58120087-58120106 | None:intergenic | 30.0% |
| AGAACTGTAGTTAGATAAGT+TGG | - | chr5_4:58120190-58120209 | None:intergenic | 30.0% | |
| ! | TATTTTCCCAAATGAACACT+TGG | + | chr5_4:58120460-58120479 | Msa0859670:intron | 30.0% |
| AGTTTAATATGGTATTTGGC+AGG | + | chr5_4:58120503-58120522 | Msa0859670:intron | 30.0% | |
| TCAAGATTTCTTTGTATGCA+TGG | - | chr5_4:58120564-58120583 | None:intergenic | 30.0% | |
| AGGTCATTGTTAACAATCTA+AGG | - | chr5_4:58120810-58120829 | None:intergenic | 30.0% | |
| CCAAAACATTAAACAACACA+AGG | - | chr5_4:58120830-58120849 | None:intergenic | 30.0% | |
| !!! | CCTTGTGTTGTTTAATGTTT+TGG | + | chr5_4:58120827-58120846 | Msa0859670:intron | 30.0% |
| GCTACCTGAAAGTTAATTAA+TGG | - | chr5_4:58120952-58120971 | None:intergenic | 30.0% | |
| ! | TAATTAACTTTCAGGTAGCA+TGG | + | chr5_4:58120953-58120972 | Msa0859670:intron | 30.0% |
| ! | GGTCTACACTTTTCAATTAA+TGG | + | chr5_4:58121084-58121103 | Msa0859670:intron | 30.0% |
| GTTCATCACGTTTAAATTTG+TGG | + | chr5_4:58121199-58121218 | Msa0859670:intron | 30.0% | |
| ATGTGGCAAAAACAAATTCA+AGG | + | chr5_4:58121361-58121380 | Msa0859670:intron | 30.0% | |
| TGTGGCAAAAACAAATTCAA+GGG | + | chr5_4:58121362-58121381 | Msa0859670:intron | 30.0% | |
| CAAAAACAAATTCAAGGGTT+TGG | + | chr5_4:58121367-58121386 | Msa0859670:intron | 30.0% | |
| ATTCAAGGGTTTGGATTAAA+AGG | + | chr5_4:58121376-58121395 | Msa0859670:intron | 30.0% | |
| TGTTTGACACAACAATACAA+AGG | + | chr5_4:58121413-58121432 | Msa0859670:intron | 30.0% | |
| TTCTGCGTATTTACTTTAGA+AGG | - | chr5_4:58121524-58121543 | None:intergenic | 30.0% | |
| ! | TCTTCTACTCTCTTCAAGTT+CGG | - | chr5_4:58116182-58116201 | None:intergenic | 35.0% |
| AGTCAGTCTGAAAATGCAAA+AGG | + | chr5_4:58116207-58116226 | Msa0859670:exon | 35.0% | |
| GAATTCAATTGAAGAAGCGA+AGG | + | chr5_4:58116330-58116349 | Msa0859670:CDS | 35.0% | |
| TTTCTGAGCTTCAAGATTCA+CGG | + | chr5_4:58116452-58116471 | Msa0859670:CDS | 35.0% | |
| AAAGCAATTTGAGGAACTTC+AGG | + | chr5_4:58116495-58116514 | Msa0859670:CDS | 35.0% | |
| !! | TAATTGAGATGCATTGACTC+AGG | + | chr5_4:58116565-58116584 | Msa0859670:intron | 35.0% |
| !! | AATTGAGATGCATTGACTCA+GGG | + | chr5_4:58116566-58116585 | Msa0859670:intron | 35.0% |
| CAAAGGATCAACTTCAACAT+TGG | + | chr5_4:58116681-58116700 | Msa0859670:CDS | 35.0% | |
| TCAACATTGGATTGCTGAAT+TGG | + | chr5_4:58116694-58116713 | Msa0859670:CDS | 35.0% | |
| GAATTCTAAATTGGAGTCTG+CGG | + | chr5_4:58116920-58116939 | Msa0859670:CDS | 35.0% | |
| TCTTGAAATCAAGATGGAAG+AGG | + | chr5_4:58117031-58117050 | Msa0859670:CDS | 35.0% | |
| ! | CAGCCTTATCTAAAGAAATG+GGG | + | chr5_4:58117187-58117206 | Msa0859670:CDS | 35.0% |
| CATCCCCATTTCTTTAGATA+AGG | - | chr5_4:58117193-58117212 | None:intergenic | 35.0% | |
| ATCTAAAGAAATGGGGATGA+TGG | + | chr5_4:58117194-58117213 | Msa0859670:CDS | 35.0% | |
| TAACTCAACCCTTACAAAAC+CGG | - | chr5_4:58117706-58117725 | None:intergenic | 35.0% | |
| ACTTCACAAATTATGTTGGC+TGG | + | chr5_4:58117789-58117808 | Msa0859670:intron | 35.0% | |
| ATTATACTGCCAGAGGTTAT+AGG | + | chr5_4:58117812-58117831 | Msa0859670:intron | 35.0% | |
| ACAGATTGAAAAGTTACAGG+AGG | + | chr5_4:58118220-58118239 | Msa0859670:intron | 35.0% | |
| GATATACCGAATTAATCCGT+TGG | + | chr5_4:58118390-58118409 | Msa0859670:intron | 35.0% | |
| ! | CAATTCTATTTTCTCAGTCC+TGG | + | chr5_4:58118775-58118794 | Msa0859670:intron | 35.0% |
| !! | AGATGTGGAAGCTTTTGAAA+AGG | + | chr5_4:58119366-58119385 | Msa0859670:CDS | 35.0% |
| !! | GGAAGCTTTTGAAAAGGAAT+TGG | + | chr5_4:58119372-58119391 | Msa0859670:CDS | 35.0% |
| ACACACTAAACCTAACTTAG+TGG | - | chr5_4:58119475-58119494 | None:intergenic | 35.0% | |
| CAGTTTACACAAACTTATGG+AGG | - | chr5_4:58119532-58119551 | None:intergenic | 35.0% | |
| CCTCAGTTTACACAAACTTA+TGG | - | chr5_4:58119535-58119554 | None:intergenic | 35.0% | |
| CCATAAGTTTGTGTAAACTG+AGG | + | chr5_4:58119532-58119551 | Msa0859670:intron | 35.0% | |
| TAAGTTTGTGTAAACTGAGG+GGG | + | chr5_4:58119535-58119554 | Msa0859670:intron | 35.0% | |
| AGGGGGATCAATAATAATCT+TGG | + | chr5_4:58119552-58119571 | Msa0859670:intron | 35.0% | |
| GAAGCATATACCAACTACAA+AGG | - | chr5_4:58119588-58119607 | None:intergenic | 35.0% | |
| ! | AGTTGGTATATGCTTCATTC+TGG | + | chr5_4:58119592-58119611 | Msa0859670:intron | 35.0% |
| TATATGCTTCATTCTGGTGT+CGG | + | chr5_4:58119598-58119617 | Msa0859670:intron | 35.0% | |
| ATATGAAATGCCCTCTCAAT+CGG | + | chr5_4:58119958-58119977 | Msa0859670:intron | 35.0% | |
| TATATTTCAGCCGATTGAGA+GGG | - | chr5_4:58119971-58119990 | None:intergenic | 35.0% | |
| CTCATCCAATTATATCATGC+AGG | + | chr5_4:58119991-58120010 | Msa0859670:intron | 35.0% | |
| GAACTCCTGCATGATATAAT+TGG | - | chr5_4:58119999-58120018 | None:intergenic | 35.0% | |
| TTATATCATGCAGGAGTTCA+CGG | + | chr5_4:58120000-58120019 | Msa0859670:intron | 35.0% | |
| AAGACACCAAGTGTTCATTT+GGG | - | chr5_4:58120469-58120488 | None:intergenic | 35.0% | |
| AAAGACACCAAGTGTTCATT+TGG | - | chr5_4:58120470-58120489 | None:intergenic | 35.0% | |
| AACAGTTACCATTACATGAG+TGG | - | chr5_4:58120670-58120689 | None:intergenic | 35.0% | |
| AGTTATTGGGCCTATTCTAT+CGG | + | chr5_4:58120706-58120725 | Msa0859670:intron | 35.0% | |
| AGTCAGTAGTCTAGTACATT+TGG | + | chr5_4:58120744-58120763 | Msa0859670:intron | 35.0% | |
| TTAAACTATTTCGTTGTCGG+AGG | - | chr5_4:58120984-58121003 | None:intergenic | 35.0% | |
| ATTAAAGTAGTTCACACACG+TGG | + | chr5_4:58121063-58121082 | Msa0859670:intron | 35.0% | |
| ACTCATCTGTGCATTAAACT+GGG | - | chr5_4:58121338-58121357 | None:intergenic | 35.0% | |
| ! | GCGTATTTACTTTAGAAGGA+GGG | - | chr5_4:58121520-58121539 | None:intergenic | 35.0% |
| ! | TGCGTATTTACTTTAGAAGG+AGG | - | chr5_4:58121521-58121540 | None:intergenic | 35.0% |
| AATGCAAAAGGATGCAGCTA+TGG | + | chr5_4:58116219-58116238 | Msa0859670:exon | 40.0% | |
| ATGCAAAAGGATGCAGCTAT+GGG | + | chr5_4:58116220-58116239 | Msa0859670:CDS | 40.0% | |
| ! | CGCTGTCTAAGATTTATGCT+TGG | + | chr5_4:58116398-58116417 | Msa0859670:intron | 40.0% |
| ! | CTTTGCCAAAGAGTATACTC+GGG | - | chr5_4:58116666-58116685 | None:intergenic | 40.0% |
| ! | CCTTTGCCAAAGAGTATACT+CGG | - | chr5_4:58116667-58116686 | None:intergenic | 40.0% |
| TCCATGACATTTCTGACTCT+AGG | + | chr5_4:58116958-58116977 | Msa0859670:CDS | 40.0% | |
| TCCTAGAGTCAGAAATGTCA+TGG | - | chr5_4:58116962-58116981 | None:intergenic | 40.0% | |
| ACACAGACCAGTATCTTGTT+TGG | - | chr5_4:58117057-58117076 | None:intergenic | 40.0% | |
| TCGCTAAGAGAGAAATTGAG+TGG | + | chr5_4:58117282-58117301 | Msa0859670:CDS | 40.0% | |
| CGCTAAGAGAGAAATTGAGT+GGG | + | chr5_4:58117283-58117302 | Msa0859670:CDS | 40.0% | |
| AAGAGAGAAATTGAGTGGGA+AGG | + | chr5_4:58117287-58117306 | Msa0859670:CDS | 40.0% | |
| TTAGACTCTCAAACACACAC+AGG | - | chr5_4:58117614-58117633 | None:intergenic | 40.0% | |
| TGTGTTTGAGAGTCTAACGT+TGG | + | chr5_4:58117617-58117636 | Msa0859670:intron | 40.0% | |
| !! | CTTACAAGCCGGTTTTGTAA+GGG | + | chr5_4:58117695-58117714 | Msa0859670:intron | 40.0% |
| ATTTGTTTGCAAGGCTCTTG+AGG | - | chr5_4:58117914-58117933 | None:intergenic | 40.0% | |
| GTTCAGCACATTTGTTTGCA+AGG | - | chr5_4:58117923-58117942 | None:intergenic | 40.0% | |
| TGCAAACAAATGTGCTGAAC+AGG | + | chr5_4:58117923-58117942 | Msa0859670:CDS | 40.0% | |
| CAAATGTGCTGAACAGGATT+CGG | + | chr5_4:58117929-58117948 | Msa0859670:CDS | 40.0% | |
| AAAGTTACAGGAGGAGAATC+AGG | + | chr5_4:58118229-58118248 | Msa0859670:CDS | 40.0% | |
| ! | ACCTTTTCTGATAATCCTCC+AGG | - | chr5_4:58118283-58118302 | None:intergenic | 40.0% |
| ! | GATCTGAAGTTGTTCAGTAG+TGG | + | chr5_4:58118308-58118327 | Msa0859670:CDS | 40.0% |
| ATTAACATCTAACCACAGGC+AGG | - | chr5_4:58118437-58118456 | None:intergenic | 40.0% | |
| AAAGTCTCACCAACACCAAA+TGG | - | chr5_4:58118914-58118933 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAGTTGATCAGCGA+AGG | - | chr5_4:58119027-58119046 | None:intergenic | 40.0% |
| CTTGGTCATTCAATCAAGTC+TGG | + | chr5_4:58119417-58119436 | Msa0859670:intron | 40.0% | |
| ACTCTACTCTCCACTAAGTT+AGG | + | chr5_4:58119462-58119481 | Msa0859670:intron | 40.0% | |
| GTATATTTCAGCCGATTGAG+AGG | - | chr5_4:58119972-58119991 | None:intergenic | 40.0% | |
| GAAGCTTGAGGAAGAACTAA+TGG | + | chr5_4:58120025-58120044 | Msa0859670:CDS | 40.0% | |
| CAGAATTCAGCTCAGCAATT+TGG | - | chr5_4:58120061-58120080 | None:intergenic | 40.0% | |
| !!! | CTGTTTTTACCTCCTTTGGA+CGG | - | chr5_4:58120166-58120185 | None:intergenic | 40.0% |
| TATCCCACTCTCACATCTTA+AGG | + | chr5_4:58120265-58120284 | Msa0859670:intron | 40.0% | |
| GTTATTGGGCCTATTCTATC+GGG | + | chr5_4:58120707-58120726 | Msa0859670:intron | 40.0% | |
| ACCTAAATGCCCGATAGAAT+AGG | - | chr5_4:58120719-58120738 | None:intergenic | 40.0% | |
| GTAAACGGAGCAAGGTTAAA+TGG | - | chr5_4:58121315-58121334 | None:intergenic | 40.0% | |
| GTGCATTAAACTGGGGTAAA+CGG | - | chr5_4:58121330-58121349 | None:intergenic | 40.0% | |
| CTCATCTGTGCATTAAACTG+GGG | - | chr5_4:58121337-58121356 | None:intergenic | 40.0% | |
| CACTCATCTGTGCATTAAAC+TGG | - | chr5_4:58121339-58121358 | None:intergenic | 40.0% | |
| ! | AGATTTTGCCACCGTTTGAA+CGG | - | chr5_4:58121496-58121515 | None:intergenic | 40.0% |
| TCCAATGCTGATGCAGTGAA+CGG | + | chr5_4:58116253-58116272 | Msa0859670:CDS | 45.0% | |
| CACTTCCCGAGTATACTCTT+TGG | + | chr5_4:58116658-58116677 | Msa0859670:CDS | 45.0% | |
| CCGAGTATACTCTTTGGCAA+AGG | + | chr5_4:58116664-58116683 | Msa0859670:CDS | 45.0% | |
| ATCATTGACAGAGTCTCTGC+AGG | + | chr5_4:58116727-58116746 | Msa0859670:CDS | 45.0% | |
| GCAGGACTAACGTTGCAAAA+CGG | + | chr5_4:58116886-58116905 | Msa0859670:CDS | 45.0% | |
| CAGGACTAACGTTGCAAAAC+GGG | + | chr5_4:58116887-58116906 | Msa0859670:CDS | 45.0% | |
| TAACGTTGCAAAACGGGAGA+AGG | + | chr5_4:58116893-58116912 | Msa0859670:CDS | 45.0% | |
| GAAGAGGCCAAACAAGATAC+TGG | + | chr5_4:58117047-58117066 | Msa0859670:CDS | 45.0% | |
| !! | CAAAGCTGAGTTTGGTGTGA+TGG | + | chr5_4:58117161-58117180 | Msa0859670:CDS | 45.0% |
| TGGAAACACAGTTGAAGCGA+TGG | + | chr5_4:58117214-58117233 | Msa0859670:CDS | 45.0% | |
| GTCTAACGTTGGATGCGATT+TGG | + | chr5_4:58117628-58117647 | Msa0859670:intron | 45.0% | |
| TCACTCATCACCTTACAAGC+CGG | + | chr5_4:58117684-58117703 | Msa0859670:intron | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr5_4:58117697-58117716 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr5_4:58117694-58117713 | Msa0859670:intron | 45.0% |
| AAGAACACGCCTATAACCTC+TGG | - | chr5_4:58117824-58117843 | None:intergenic | 45.0% | |
| GCTTGTCTGCTTCAACACAA+AGG | - | chr5_4:58117889-58117908 | None:intergenic | 45.0% | |
| !! | TGTTTTGGACATGTATGGCC+TGG | + | chr5_4:58118262-58118281 | Msa0859670:CDS | 45.0% |
| GCCTGGAGGATTATCAGAAA+AGG | + | chr5_4:58118279-58118298 | Msa0859670:CDS | 45.0% | |
| ! | GCTTGTATCAGAAAGCGTGA+AGG | + | chr5_4:58118962-58118981 | Msa0859670:intron | 45.0% |
| CGAGCAGATTCAGAAAGATG+TGG | + | chr5_4:58119351-58119370 | Msa0859670:CDS | 45.0% | |
| CACAAACTTATGGAGGCTCT+AGG | - | chr5_4:58119525-58119544 | None:intergenic | 45.0% | |
| AGCTCAAGAGCCTTTGTAGT+TGG | + | chr5_4:58119575-58119594 | Msa0859670:intron | 45.0% | |
| GCATTTCACGTCGTGTAAAG+AGG | - | chr5_4:58119802-58119821 | None:intergenic | 45.0% | |
| ! | GCTATGTCTTGTTCTGTGTC+TGG | + | chr5_4:58119842-58119861 | Msa0859670:intron | 45.0% |
| CTTGTTCTGTGTCTGGATTC+TGG | + | chr5_4:58119849-58119868 | Msa0859670:intron | 45.0% | |
| CGTCCAAAGGAGGTAAAAAC+AGG | + | chr5_4:58120164-58120183 | Msa0859670:intron | 45.0% | |
| !!! | TGGCCTGTTTTTACCTCCTT+TGG | - | chr5_4:58120170-58120189 | None:intergenic | 45.0% |
| CCACCTTAAGATGTGAGAGT+GGG | - | chr5_4:58120271-58120290 | None:intergenic | 45.0% | |
| CCACTCTCACATCTTAAGGT+GGG | + | chr5_4:58120269-58120288 | Msa0859670:intron | 45.0% | |
| CACTCTCACATCTTAAGGTG+GGG | + | chr5_4:58120270-58120289 | Msa0859670:intron | 45.0% | |
| CCATTACATGAGTGGTGACT+CGG | - | chr5_4:58120662-58120681 | None:intergenic | 45.0% | |
| GCCTATTCTATCGGGCATTT+AGG | + | chr5_4:58120715-58120734 | Msa0859670:intron | 45.0% | |
| AACGGAGCAAGGTTAAATGG+AGG | - | chr5_4:58121312-58121331 | None:intergenic | 45.0% | |
| ATGCACAGATGAGTGACATG+TGG | + | chr5_4:58121344-58121363 | Msa0859670:intron | 45.0% | |
| GACATGAGGGTGAGAGAATA+CGG | - | chr5_4:58121441-58121460 | None:intergenic | 45.0% | |
| TATGTCGATGCCCGTTCAAA+CGG | + | chr5_4:58121482-58121501 | Msa0859670:intron | 45.0% | |
| ! | GATTTTGCCACCGTTTGAAC+GGG | - | chr5_4:58121495-58121514 | None:intergenic | 45.0% |
| !!! | TTGATAATTTTTTTTTTTTT+TGG | + | chr5_4:58116768-58116787 | Msa0859670:intron | 5.0% |
| !!! | TTGATAATTTTTATTTTTTT+TGG | + | chr5_4:58116818-58116837 | Msa0859670:intron | 5.0% |
| ! | GTTCACTGCATCAGCATTGG+AGG | - | chr5_4:58116254-58116273 | None:intergenic | 50.0% |
| TCCGTTCACTGCATCAGCAT+TGG | - | chr5_4:58116257-58116276 | None:intergenic | 50.0% | |
| AAGCCTGCAGAGAGAGCTAT+GGG | + | chr5_4:58116292-58116311 | Msa0859670:CDS | 50.0% | |
| AAACCCATAGCTCTCTCTGC+AGG | - | chr5_4:58116298-58116317 | None:intergenic | 50.0% | |
| TGGAGTCTGCGGTTAATGCA+AGG | + | chr5_4:58116931-58116950 | Msa0859670:CDS | 50.0% | |
| GGGGGCGACAAATCTTAGAT+AGG | - | chr5_4:58117551-58117570 | None:intergenic | 50.0% | |
| AGGACTGGACATCTAGTGTG+TGG | - | chr5_4:58117594-58117613 | None:intergenic | 50.0% | |
| CTCTCAAACACACACAGGAC+TGG | - | chr5_4:58117609-58117628 | None:intergenic | 50.0% | |
| TGGCTGGATTATACTGCCAG+AGG | + | chr5_4:58117805-58117824 | Msa0859670:intron | 50.0% | |
| TTTGGACATGTATGGCCTGG+AGG | + | chr5_4:58118265-58118284 | Msa0859670:CDS | 50.0% | |
| !! | TGAAAAGAAGCACCTGCCTG+TGG | + | chr5_4:58118422-58118441 | Msa0859670:intron | 50.0% |
| TAGTAGGGGGCTAAGTAGCA+GGG | - | chr5_4:58119114-58119133 | None:intergenic | 50.0% | |
| TTAGTAGGGGGCTAAGTAGC+AGG | - | chr5_4:58119115-58119134 | None:intergenic | 50.0% | |
| TTCCCACCTGGCAAACTCTA+AGG | - | chr5_4:58119266-58119285 | None:intergenic | 50.0% | |
| AGAGTTTGCCAGGTGGGAAT+TGG | + | chr5_4:58119267-58119286 | Msa0859670:CDS | 50.0% | |
| GGAATTGGCAGATGCTGAGA+AGG | + | chr5_4:58119282-58119301 | Msa0859670:CDS | 50.0% | |
| !! | GGTGTCGGCTTACTTTCTCA+TGG | + | chr5_4:58119613-58119632 | Msa0859670:intron | 50.0% |
| GAGTTCACGGAAGAAGCTTG+AGG | + | chr5_4:58120013-58120032 | Msa0859670:CDS | 50.0% | |
| CTTTGGACGGTCAGAACAGA+CGG | - | chr5_4:58120153-58120172 | None:intergenic | 50.0% | |
| CCCACTCTCACATCTTAAGG+TGG | + | chr5_4:58120268-58120287 | Msa0859670:intron | 50.0% | |
| CCCACCTTAAGATGTGAGAG+TGG | - | chr5_4:58120272-58120291 | None:intergenic | 50.0% | |
| TTCCACAGGCAGGACATTTG+CGG | - | chr5_4:58120596-58120615 | None:intergenic | 50.0% | |
| CTGTCCAAATGCTGTTCCAC+AGG | - | chr5_4:58120610-58120629 | None:intergenic | 50.0% | |
| CCGAGTCACCACTCATGTAA+TGG | + | chr5_4:58120659-58120678 | Msa0859670:intron | 50.0% | |
| AAACTGGGGTAAACGGAGCA+AGG | - | chr5_4:58121323-58121342 | None:intergenic | 50.0% | |
| !! | GTTTGAACGGGCATCGACAT+AGG | - | chr5_4:58121483-58121502 | None:intergenic | 50.0% |
| GAAGCCTGCAGAGAGAGCTA+TGG | + | chr5_4:58116291-58116310 | Msa0859670:CDS | 55.0% | |
| TGGTTAGAGCGACCCGATAG+CGG | - | chr5_4:58117574-58117593 | None:intergenic | 55.0% | |
| AGTAGGGGGCTAAGTAGCAG+GGG | - | chr5_4:58119113-58119132 | None:intergenic | 55.0% | |
| ! | CCACCTGGCAAACTCTAAGG+CGG | - | chr5_4:58119263-58119282 | None:intergenic | 55.0% |
| CGCCTTAGAGTTTGCCAGGT+GGG | + | chr5_4:58119261-58119280 | Msa0859670:CDS | 55.0% | |
| AGCATCTGCCAATTCCCACC+TGG | - | chr5_4:58119278-58119297 | None:intergenic | 55.0% | |
| CGTCTGTTCTGACCGTCCAA+AGG | + | chr5_4:58120151-58120170 | Msa0859670:CDS | 55.0% | |
| CTGTTCTGACCGTCCAAAGG+AGG | + | chr5_4:58120154-58120173 | Msa0859670:CDS | 55.0% | |
| AGGCAGGACATTTGCGGTGA+CGG | - | chr5_4:58120590-58120609 | None:intergenic | 55.0% | |
| CCAAATGCTGTTCCACAGGC+AGG | - | chr5_4:58120606-58120625 | None:intergenic | 55.0% | |
| CCTGCCTGTGGAACAGCATT+TGG | + | chr5_4:58120603-58120622 | Msa0859670:CDS | 55.0% | |
| GAGAGAGGGTGGAGACATGA+GGG | - | chr5_4:58121454-58121473 | None:intergenic | 55.0% | |
| AGAGAGAGGGTGGAGACATG+AGG | - | chr5_4:58121455-58121474 | None:intergenic | 55.0% | |
| GACATAGGTGGCGAGAGAGA+GGG | - | chr5_4:58121468-58121487 | None:intergenic | 55.0% | |
| !! | TGAACGGGCATCGACATAGG+TGG | - | chr5_4:58121480-58121499 | None:intergenic | 55.0% |
| GCTCTCTCTGCAGGCTTCTC+AGG | - | chr5_4:58116289-58116308 | None:intergenic | 60.0% | |
| ATTTGTCGCCCCCCCGCTAT+CGG | + | chr5_4:58117558-58117577 | Msa0859670:intron | 60.0% | |
| ! | TTAGAGCGACCCGATAGCGG+GGG | - | chr5_4:58117571-58117590 | None:intergenic | 60.0% |
| GTTAGAGCGACCCGATAGCG+GGG | - | chr5_4:58117572-58117591 | None:intergenic | 60.0% | |
| GGTTAGAGCGACCCGATAGC+GGG | - | chr5_4:58117573-58117592 | None:intergenic | 60.0% | |
| !! | CAAACTCTAAGGCGGCTGCG+AGG | - | chr5_4:58119255-58119274 | None:intergenic | 60.0% |
| CAGCCGCCTTAGAGTTTGCC+AGG | + | chr5_4:58119257-58119276 | Msa0859670:CDS | 60.0% | |
| CCGCCTTAGAGTTTGCCAGG+TGG | + | chr5_4:58119260-58119279 | Msa0859670:CDS | 60.0% | |
| CACCGCAAATGTCCTGCCTG+TGG | + | chr5_4:58120591-58120610 | Msa0859670:CDS | 60.0% | |
| ATAGGTGGCGAGAGAGAGGG+TGG | - | chr5_4:58121465-58121484 | None:intergenic | 60.0% | |
| CGACATAGGTGGCGAGAGAG+AGG | - | chr5_4:58121469-58121488 | None:intergenic | 60.0% | |
| GTCGATGCCCGTTCAAACGG+TGG | + | chr5_4:58121485-58121504 | Msa0859670:intron | 60.0% | |
| TTTGTCGCCCCCCCGCTATC+GGG | + | chr5_4:58117559-58117578 | Msa0859670:intron | 65.0% | |
| !! | TAGAGCGACCCGATAGCGGG+GGG | - | chr5_4:58117570-58117589 | None:intergenic | 65.0% |
| !! | AGAGCGACCCGATAGCGGGG+GGG | - | chr5_4:58117569-58117588 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 58116158 | 58121680 | 58116158 | ID=Msa0859670;Name=Msa0859670 |
| chr5_4 | mRNA | 58116158 | 58121680 | 58116158 | ID=Msa0859670-mRNA-1;Parent=Msa0859670;Name=Msa0859670-mRNA-1;_AED=0.42;_eAED=0.42;_QI=62|0.81|0.66|0.91|0.90|0.91|12|0|507 |
| chr5_4 | exon | 58116158 | 58116351 | 58116158 | ID=Msa0859670-mRNA-1:exon:17718;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58116433 | 58116516 | 58116433 | ID=Msa0859670-mRNA-1:exon:17719;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58116629 | 58116748 | 58116629 | ID=Msa0859670-mRNA-1:exon:17720;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58116882 | 58117068 | 58116882 | ID=Msa0859670-mRNA-1:exon:17721;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58117148 | 58117308 | 58117148 | ID=Msa0859670-mRNA-1:exon:17722;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58117903 | 58117974 | 58117903 | ID=Msa0859670-mRNA-1:exon:17723;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58118224 | 58118334 | 58118224 | ID=Msa0859670-mRNA-1:exon:17724;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58118963 | 58119100 | 58118963 | ID=Msa0859670-mRNA-1:exon:17725;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58119202 | 58119404 | 58119202 | ID=Msa0859670-mRNA-1:exon:17726;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58120013 | 58120175 | 58120013 | ID=Msa0859670-mRNA-1:exon:17727;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58120525 | 58120635 | 58120525 | ID=Msa0859670-mRNA-1:exon:17728;Parent=Msa0859670-mRNA-1 |
| chr5_4 | exon | 58121642 | 58121680 | 58121642 | ID=Msa0859670-mRNA-1:exon:17729;Parent=Msa0859670-mRNA-1 |
| chr5_4 | five_prime_UTR | 58116158 | 58116219 | 58116158 | ID=Msa0859670-mRNA-1:five_prime_utr;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58116220 | 58116351 | 58116220 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58116433 | 58116516 | 58116433 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58116629 | 58116748 | 58116629 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58116882 | 58117068 | 58116882 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58117148 | 58117308 | 58117148 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58117903 | 58117974 | 58117903 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58118224 | 58118334 | 58118224 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58118963 | 58119100 | 58118963 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58119202 | 58119404 | 58119202 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58120013 | 58120175 | 58120013 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58120525 | 58120635 | 58120525 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| chr5_4 | CDS | 58121642 | 58121680 | 58121642 | ID=Msa0859670-mRNA-1:cds;Parent=Msa0859670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
