AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1133710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133710 MtrunA17_Chr7g0263491 90.236 297 18 3 1 297 1 286 1.66e-164 458
Msa1133710 MtrunA17_Chr1g0182101 55.822 292 96 9 1 292 1 259 1.44e-87 262
Msa1133710 MtrunA17_Chr4g0030661 33.692 279 118 8 1 277 62 275 6.74e-31 117
Msa1133710 MtrunA17_Chr4g0050571 58.108 74 29 1 206 277 91 164 1.14e-24 97.8
Msa1133710 MtrunA17_Chr6g0485081 54.688 64 29 0 214 277 65 128 2.70e-21 87.4
Msa1133710 MtrunA17_Chr8g0390711 53.125 64 30 0 214 277 66 129 1.27e-20 85.9
Msa1133710 MtrunA17_Chr7g0218981 40.000 85 50 1 212 295 2 86 4.26e-14 67.8
Msa1133710 MtrunA17_Chr3g0145621 46.377 69 35 1 214 280 26 94 4.05e-11 60.5
Msa1133710 MtrunA17_Chr4g0036931 38.372 86 51 1 201 284 15 100 4.74e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133710 AT2G37390.1 40.426 282 125 8 1 277 1 244 1.20e-53 176
Msa1133710 AT2G37390.2 41.135 282 122 9 1 277 1 243 4.59e-53 174
Msa1133710 AT3G53530.1 37.500 280 125 7 1 277 1 233 4.44e-41 143
Msa1133710 AT3G53530.2 37.367 281 125 8 1 277 1 234 2.97e-39 138
Msa1133710 AT5G02600.2 52.555 137 45 3 164 280 180 316 5.64e-35 129
Msa1133710 AT5G02600.1 52.555 137 45 3 164 280 180 316 5.64e-35 129
Msa1133710 AT2G28660.1 69.014 71 22 0 207 277 176 246 1.03e-28 111
Msa1133710 AT3G24450.1 50.000 64 32 0 214 277 74 137 1.32e-16 75.5
Msa1133710 AT1G66240.1 43.038 79 42 2 201 277 20 97 1.13e-14 69.3
Msa1133710 AT3G56240.3 46.970 66 34 1 214 278 3 68 9.00e-14 67.4
Msa1133710 AT3G56240.1 46.970 66 34 1 214 278 3 68 9.00e-14 67.4
Msa1133710 AT5G27690.1 40.449 89 46 3 191 278 13 95 9.69e-13 68.2

Find 68 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTGTTGTACTAGATTT+TGG 0.170922 7_3:+87442801 None:intergenic
ATTAGATTATGACCCTGTTT+TGG 0.240827 7_3:-87442919 Msa1133710:CDS
GTATGCTTTGAGTCTGAATT+AGG 0.272033 7_3:-87441523 Msa1133710:three_prime_UTR
AAATGATGTGACAAAATTAA+AGG 0.289010 7_3:-87441353 Msa1133710:three_prime_UTR
CCAGAAGTTGCTTCATCAAT+TGG 0.294671 7_3:-87441617 Msa1133710:CDS
GATTTGCATACCTTGCATTC+TGG 0.322525 7_3:+87442575 None:intergenic
ACCAACTACTGTAACCTTCT+TGG 0.326525 7_3:+87441700 None:intergenic
GCTTGGTGAGACAGTTTCTT+TGG 0.328826 7_3:-87442949 Msa1133710:CDS
ATGGACAAGTTTAAGGTTGA+TGG 0.338522 7_3:+87443205 None:intergenic
AGGTGAAGACTGCACAAATT+TGG 0.341639 7_3:-87441640 Msa1133710:CDS
AAGGAAGATATAAGGAAGTT+TGG 0.345280 7_3:+87443498 None:intergenic
CTGTAGTGAAGGAAGATATA+AGG 0.355394 7_3:+87443490 None:intergenic
TCTACCACCAAAGTGATTAA+TGG 0.359645 7_3:+87443322 None:intergenic
GTTGCAGATTGTGGTGTTAA+GGG 0.363212 7_3:-87442646 Msa1133710:intron
TGTTGCAGATTGTGGTGTTA+AGG 0.365637 7_3:-87442647 Msa1133710:intron
GAAAGAAAACAGAAAGAGAT+AGG 0.375819 7_3:+87443587 None:intergenic
CCAATTGATGAAGCAACTTC+TGG 0.381921 7_3:+87441617 None:intergenic
TGATCGGTTAGAAGAATTGA+TGG 0.401964 7_3:+87443453 None:intergenic
CTTCTTAAAATACTATCAAC+TGG 0.402151 7_3:+87443029 None:intergenic
AGAAACTTTATCTTTGCATA+AGG 0.405664 7_3:-87441419 Msa1133710:three_prime_UTR
ACCTTAGTTAAACCCAAAAC+AGG 0.426654 7_3:+87442906 None:intergenic
AAGGTTGTGAAGGGAAGGTT+AGG 0.448311 7_3:-87442608 Msa1133710:CDS
ATGATTAGTGTTAAGACATA+TGG 0.448878 7_3:+87443376 None:intergenic
TCACCCGTTGTGATGAGAAA+TGG 0.454829 7_3:+87441301 None:intergenic
ATGCTTGCCATTACGCTCAA+TGG 0.459884 7_3:+87441668 None:intergenic
GGTTAGAAGAATTGATGGTT+TGG 0.460828 7_3:+87443458 None:intergenic
GCCAAGAAGGTTACAGTAGT+TGG 0.460899 7_3:-87441701 Msa1133710:CDS
GTGTCAGTGAGATCTCTTGC+TGG 0.463146 7_3:+87443254 None:intergenic
TCCAACACCATTAATCACTT+TGG 0.465049 7_3:-87443329 Msa1133710:CDS
TTGGGATTTAAACTTTAAAA+CGG 0.474379 7_3:+87441271 None:intergenic
GGCTGCAAAGTCTATGTTGA+AGG 0.474842 7_3:+87441721 None:intergenic
GTTGCTTCATCAATTGGATC+TGG 0.476518 7_3:-87441611 Msa1133710:CDS
GGTGAGACAGTTTCTTTGGA+TGG 0.476989 7_3:-87442945 Msa1133710:CDS
AAAACAGAAAGAGATAGGTA+TGG 0.484188 7_3:+87443592 None:intergenic
ATGCCATTTCTCATCACAAC+GGG 0.488182 7_3:-87441304 Msa1133710:three_prime_UTR
GAAAGAGATAGGTATGGAAG+TGG 0.491658 7_3:+87443598 None:intergenic
CATAGACTTTGCAGCCAAGA+AGG 0.492938 7_3:-87441714 Msa1133710:CDS
AGGGTTTCTCTACACTGTAA+AGG 0.497170 7_3:-87442627 Msa1133710:CDS
TGGACAAGTTTAAGGTTGAT+GGG 0.502719 7_3:+87443206 None:intergenic
GGTTAGAGATTCTGTAGTGA+AGG 0.513015 7_3:+87443479 None:intergenic
AACACCATTAATCACTTTGG+TGG 0.517962 7_3:-87443326 Msa1133710:CDS
ACCAAAGTGATTAATGGTGT+TGG 0.523108 7_3:+87443328 None:intergenic
ACTTCGTCAAGATATTTGCT+TGG 0.524728 7_3:-87442966 Msa1133710:CDS
TAAAATCTCTTCAAAAGCTA+CGG 0.526871 7_3:+87441455 None:intergenic
GGAGGAGTGATTAAATCAGA+AGG 0.533878 7_3:+87442990 None:intergenic
GATGGGGTTGTGGCGATCAA+TGG 0.538267 7_3:+87443298 None:intergenic
CAAATATGATCTAATTGAAG+AGG 0.540737 7_3:-87441568 Msa1133710:exon
AGTTTAAGGTTGATGGGTGA+AGG 0.543572 7_3:+87443212 None:intergenic
GTTAAGACATATGGCTGTTG+AGG 0.547442 7_3:+87443385 None:intergenic
GATCTGTGATGATGGGGTTG+TGG 0.561276 7_3:+87443288 None:intergenic
TGTAACTCCATTGAGCGTAA+TGG 0.561591 7_3:-87441675 Msa1133710:CDS
CTGTAAAGGTTGTGAAGGGA+AGG 0.564183 7_3:-87442613 Msa1133710:CDS
CTACACTGTAAAGGTTGTGA+AGG 0.566064 7_3:-87442618 Msa1133710:CDS
AGGTTGATGGGTGAAGGAGA+AGG 0.573141 7_3:+87443218 None:intergenic
ATCTCACTGACACTGCTCCT+AGG 0.576489 7_3:-87443244 Msa1133710:CDS
TGAAGAGGAAAATAGACTGT+TGG 0.579155 7_3:-87441553 Msa1133710:three_prime_UTR
AAACATCTCTCCAGAATGCA+AGG 0.579496 7_3:-87442585 Msa1133710:intron
AGCAAATATCTTGACGAAGT+AGG 0.587565 7_3:+87442969 None:intergenic
CGTAATGGCAAGCATATCAA+AGG 0.592668 7_3:-87441660 Msa1133710:CDS
AAATATCTTGACGAAGTAGG+AGG 0.605384 7_3:+87442972 None:intergenic
TACACTGTAAAGGTTGTGAA+GGG 0.606760 7_3:-87442617 Msa1133710:CDS
GGTGAAGGAGAAGGTGACCT+AGG 0.609366 7_3:+87443227 None:intergenic
CTCTTTACACAAAATCCCAA+AGG 0.660407 7_3:-87443549 Msa1133710:five_prime_UTR
CCTTAGTTAAACCCAAAACA+GGG 0.664376 7_3:+87442907 None:intergenic
TGTGTAAAGAGTGCTTGACA+TGG 0.673842 7_3:+87443561 None:intergenic
AAAATCTAGTACAACAAACC+AGG 0.681480 7_3:-87442799 Msa1133710:intron
GGAGTGATTAAATCAGAAGG+TGG 0.685023 7_3:+87442993 None:intergenic
AATGCCATTTCTCATCACAA+CGG 0.732153 7_3:-87441305 Msa1133710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCACATATAAGAAAAATA+AGG - chr7_3:87442531-87442550 Msa1133710:intron 15.0%
!! AGGTTATATATGAATATTAT+TGG - chr7_3:87442551-87442570 Msa1133710:intron 15.0%
!!! TTAAGATACATTCTTTTAAA+TGG + chr7_3:87442651-87442670 None:intergenic 15.0%
!! ACAAAATTTAATCTTTAGTT+GGG + chr7_3:87442848-87442867 None:intergenic 15.0%
!! TACAAAATTTAATCTTTAGT+TGG + chr7_3:87442849-87442868 None:intergenic 15.0%
!!! ACTAAAGATTAAATTTTGTA+TGG - chr7_3:87442849-87442868 Msa1133710:CDS 15.0%
!!! AAGAGATTTTATAGTTTAAT+TGG - chr7_3:87443460-87443479 Msa1133710:five_prime_UTR 15.0%
!!! ATGTAATTAAATTTTCTCTT+GGG + chr7_3:87443525-87443544 None:intergenic 15.0%
!!! AATGTAATTAAATTTTCTCT+TGG + chr7_3:87443526-87443545 None:intergenic 15.0%
!! TTTCACATATAAGAAAAATA+AGG - chr7_3:87442531-87442550 Msa1133710:intron 15.0%
!! AGGTTATATATGAATATTAT+TGG - chr7_3:87442551-87442570 Msa1133710:intron 15.0%
!!! TTAAGATACATTCTTTTAAA+TGG + chr7_3:87442651-87442670 None:intergenic 15.0%
!! ACAAAATTTAATCTTTAGTT+GGG + chr7_3:87442848-87442867 None:intergenic 15.0%
!! TACAAAATTTAATCTTTAGT+TGG + chr7_3:87442849-87442868 None:intergenic 15.0%
!!! ACTAAAGATTAAATTTTGTA+TGG - chr7_3:87442849-87442868 Msa1133710:CDS 15.0%
!!! AAGAGATTTTATAGTTTAAT+TGG - chr7_3:87443460-87443479 Msa1133710:five_prime_UTR 15.0%
!!! ATGTAATTAAATTTTCTCTT+GGG + chr7_3:87443525-87443544 None:intergenic 15.0%
!!! AATGTAATTAAATTTTCTCT+TGG + chr7_3:87443526-87443545 None:intergenic 15.0%
!!! TTCATTTTTTGGAATATGAT+CGG + chr7_3:87441469-87441488 None:intergenic 20.0%
!! ATCATATTCCAAAAAATGAA+AGG - chr7_3:87441469-87441488 Msa1133710:three_prime_UTR 20.0%
!!! TTTTACAGAATCTTAATAAC+TGG + chr7_3:87442422-87442441 None:intergenic 20.0%
!! ACAAAAAAATAACGTTTAGA+AGG + chr7_3:87442502-87442521 None:intergenic 20.0%
!!! TATCGTTATTATTTTGTTGA+GGG + chr7_3:87442618-87442637 None:intergenic 20.0%
!! TATTTAATATCAAACACAAG+TGG - chr7_3:87442883-87442902 Msa1133710:CDS 20.0%
!!! TAATTTTGTAAGGTTAAGTT+AGG + chr7_3:87442955-87442974 None:intergenic 20.0%
!!! CTTTACAAACTAATTTTGTA+AGG + chr7_3:87442965-87442984 None:intergenic 20.0%
!! TTTCATTTCGAAAAATCAAT+CGG + chr7_3:87443064-87443083 None:intergenic 20.0%
!! AAATGAAATAACCATGTTTA+TGG - chr7_3:87443076-87443095 Msa1133710:CDS 20.0%
!!! TTCAATATTTCTTTTTGCAT+TGG - chr7_3:87443135-87443154 Msa1133710:CDS 20.0%
!!! TTTTTGCATTGGTAATTAAA+TGG - chr7_3:87443146-87443165 Msa1133710:CDS 20.0%
!!! TTTTGCATTGGTAATTAAAT+GGG - chr7_3:87443147-87443166 Msa1133710:CDS 20.0%
!! AAATGATGTGACAAAATTAA+AGG - chr7_3:87443550-87443569 Msa1133710:five_prime_UTR 20.0%
!!! TTCATTTTTTGGAATATGAT+CGG + chr7_3:87441469-87441488 None:intergenic 20.0%
!! ATCATATTCCAAAAAATGAA+AGG - chr7_3:87441469-87441488 Msa1133710:three_prime_UTR 20.0%
!!! TTTTACAGAATCTTAATAAC+TGG + chr7_3:87442422-87442441 None:intergenic 20.0%
!! ACAAAAAAATAACGTTTAGA+AGG + chr7_3:87442502-87442521 None:intergenic 20.0%
!!! TATCGTTATTATTTTGTTGA+GGG + chr7_3:87442618-87442637 None:intergenic 20.0%
!! TATTTAATATCAAACACAAG+TGG - chr7_3:87442883-87442902 Msa1133710:CDS 20.0%
!!! TAATTTTGTAAGGTTAAGTT+AGG + chr7_3:87442955-87442974 None:intergenic 20.0%
!!! CTTTACAAACTAATTTTGTA+AGG + chr7_3:87442965-87442984 None:intergenic 20.0%
!! TTTCATTTCGAAAAATCAAT+CGG + chr7_3:87443064-87443083 None:intergenic 20.0%
!! AAATGAAATAACCATGTTTA+TGG - chr7_3:87443076-87443095 Msa1133710:CDS 20.0%
!!! TTCAATATTTCTTTTTGCAT+TGG - chr7_3:87443135-87443154 Msa1133710:CDS 20.0%
!!! TTTTTGCATTGGTAATTAAA+TGG - chr7_3:87443146-87443165 Msa1133710:CDS 20.0%
!!! TTTTGCATTGGTAATTAAAT+GGG - chr7_3:87443147-87443166 Msa1133710:CDS 20.0%
!! AAATGATGTGACAAAATTAA+AGG - chr7_3:87443550-87443569 Msa1133710:five_prime_UTR 20.0%
!! TTTTAAACTTCACTACCTTT+GGG + chr7_3:87441372-87441391 None:intergenic 25.0%
!!! TTTCAATGCCTTTCATTTTT+TGG + chr7_3:87441480-87441499 None:intergenic 25.0%
! ATGATTAGTGTTAAGACATA+TGG + chr7_3:87441530-87441549 None:intergenic 25.0%
! CTTCTTAAAATACTATCAAC+TGG + chr7_3:87441877-87441896 None:intergenic 25.0%
!!! CAGTTGATAGTATTTTAAGA+AGG - chr7_3:87441875-87441894 Msa1133710:intron 25.0%
!!! ATAGTATTTTAAGAAGGAGT+AGG - chr7_3:87441881-87441900 Msa1133710:intron 25.0%
!!! TAGTATTTTAAGAAGGAGTA+GGG - chr7_3:87441882-87441901 Msa1133710:intron 25.0%
! AAAAAATAACGTTTAGAAGG+TGG + chr7_3:87442499-87442518 None:intergenic 25.0%
!!! GTATCGTTATTATTTTGTTG+AGG + chr7_3:87442619-87442638 None:intergenic 25.0%
!! GATTAAATTTTGTATGGAGA+TGG - chr7_3:87442855-87442874 Msa1133710:CDS 25.0%
! AATATGACCTATTTAGTAGT+GGG + chr7_3:87442999-87443018 None:intergenic 25.0%
!!! ATTCTATCCATGTTTTTACA+TGG - chr7_3:87443016-87443035 Msa1133710:CDS 25.0%
! TTTGAATCCATGTAAAAACA+TGG + chr7_3:87443026-87443045 None:intergenic 25.0%
! CAAATATGATCTAATTGAAG+AGG - chr7_3:87443335-87443354 Msa1133710:CDS 25.0%
! TAAAATCTCTTCAAAAGCTA+CGG + chr7_3:87443451-87443470 None:intergenic 25.0%
! AGAAACTTTATCTTTGCATA+AGG - chr7_3:87443484-87443503 Msa1133710:five_prime_UTR 25.0%
!! TTTTAAACTTCACTACCTTT+GGG + chr7_3:87441372-87441391 None:intergenic 25.0%
!!! TTTCAATGCCTTTCATTTTT+TGG + chr7_3:87441480-87441499 None:intergenic 25.0%
! ATGATTAGTGTTAAGACATA+TGG + chr7_3:87441530-87441549 None:intergenic 25.0%
! CTTCTTAAAATACTATCAAC+TGG + chr7_3:87441877-87441896 None:intergenic 25.0%
!!! CAGTTGATAGTATTTTAAGA+AGG - chr7_3:87441875-87441894 Msa1133710:intron 25.0%
!!! ATAGTATTTTAAGAAGGAGT+AGG - chr7_3:87441881-87441900 Msa1133710:intron 25.0%
!!! TAGTATTTTAAGAAGGAGTA+GGG - chr7_3:87441882-87441901 Msa1133710:intron 25.0%
! AAAAAATAACGTTTAGAAGG+TGG + chr7_3:87442499-87442518 None:intergenic 25.0%
!!! GTATCGTTATTATTTTGTTG+AGG + chr7_3:87442619-87442638 None:intergenic 25.0%
!! GATTAAATTTTGTATGGAGA+TGG - chr7_3:87442855-87442874 Msa1133710:CDS 25.0%
! AATATGACCTATTTAGTAGT+GGG + chr7_3:87442999-87443018 None:intergenic 25.0%
!!! ATTCTATCCATGTTTTTACA+TGG - chr7_3:87443016-87443035 Msa1133710:CDS 25.0%
! TTTGAATCCATGTAAAAACA+TGG + chr7_3:87443026-87443045 None:intergenic 25.0%
! CAAATATGATCTAATTGAAG+AGG - chr7_3:87443335-87443354 Msa1133710:CDS 25.0%
! TAAAATCTCTTCAAAAGCTA+CGG + chr7_3:87443451-87443470 None:intergenic 25.0%
! AGAAACTTTATCTTTGCATA+AGG - chr7_3:87443484-87443503 Msa1133710:five_prime_UTR 25.0%
AAAACAGAAAGAGATAGGTA+TGG + chr7_3:87441314-87441333 None:intergenic 30.0%
GAAAGAAAACAGAAAGAGAT+AGG + chr7_3:87441319-87441338 None:intergenic 30.0%
! CTTTTAAACTTCACTACCTT+TGG + chr7_3:87441373-87441392 None:intergenic 30.0%
AAGGAAGATATAAGGAAGTT+TGG + chr7_3:87441408-87441427 None:intergenic 30.0%
!! CTTTTTCATGGACAAGTTTA+AGG + chr7_3:87441708-87441727 None:intergenic 30.0%
!!! TGTTTTTCTTGGCTTTTTCA+TGG + chr7_3:87441720-87441739 None:intergenic 30.0%
! ATTAGATTATGACCCTGTTT+TGG - chr7_3:87441984-87442003 Msa1133710:intron 30.0%
! TTAGATTATGACCCTGTTTT+GGG - chr7_3:87441985-87442004 Msa1133710:intron 30.0%
!!! TGGTTTGTTGTACTAGATTT+TGG + chr7_3:87442105-87442124 None:intergenic 30.0%
AAAATCTAGTACAACAAACC+AGG - chr7_3:87442104-87442123 Msa1133710:intron 30.0%
! TCTGTTGTTTGTTTCATGTT+TGG - chr7_3:87442213-87442232 Msa1133710:intron 30.0%
CTTCAATACCATTTGATTGA+TGG + chr7_3:87442383-87442402 None:intergenic 30.0%
GTTATAGACTTATAGTAGCT+AGG + chr7_3:87442477-87442496 None:intergenic 30.0%
!! TCTAGACAATGTTTTTAACG+AGG - chr7_3:87442716-87442735 Msa1133710:intron 30.0%
TTTAACGAGGCTTATATCAA+AGG - chr7_3:87442729-87442748 Msa1133710:intron 30.0%
AATTACTCCCACTACTAAAT+AGG - chr7_3:87442989-87443008 Msa1133710:CDS 30.0%
GAATATGACCTATTTAGTAG+TGG + chr7_3:87443000-87443019 None:intergenic 30.0%
ATAAAACGCTACCATAAACA+TGG + chr7_3:87443090-87443109 None:intergenic 30.0%
! ATTTTCTCTTGGGAGAAATT+AGG + chr7_3:87443515-87443534 None:intergenic 30.0%
AAAACAGAAAGAGATAGGTA+TGG + chr7_3:87441314-87441333 None:intergenic 30.0%
GAAAGAAAACAGAAAGAGAT+AGG + chr7_3:87441319-87441338 None:intergenic 30.0%
! CTTTTAAACTTCACTACCTT+TGG + chr7_3:87441373-87441392 None:intergenic 30.0%
AAGGAAGATATAAGGAAGTT+TGG + chr7_3:87441408-87441427 None:intergenic 30.0%
!! CTTTTTCATGGACAAGTTTA+AGG + chr7_3:87441708-87441727 None:intergenic 30.0%
!!! TGTTTTTCTTGGCTTTTTCA+TGG + chr7_3:87441720-87441739 None:intergenic 30.0%
! ATTAGATTATGACCCTGTTT+TGG - chr7_3:87441984-87442003 Msa1133710:intron 30.0%
! TTAGATTATGACCCTGTTTT+GGG - chr7_3:87441985-87442004 Msa1133710:intron 30.0%
!!! TGGTTTGTTGTACTAGATTT+TGG + chr7_3:87442105-87442124 None:intergenic 30.0%
AAAATCTAGTACAACAAACC+AGG - chr7_3:87442104-87442123 Msa1133710:intron 30.0%
! TCTGTTGTTTGTTTCATGTT+TGG - chr7_3:87442213-87442232 Msa1133710:intron 30.0%
CTTCAATACCATTTGATTGA+TGG + chr7_3:87442383-87442402 None:intergenic 30.0%
GTTATAGACTTATAGTAGCT+AGG + chr7_3:87442477-87442496 None:intergenic 30.0%
!! TCTAGACAATGTTTTTAACG+AGG - chr7_3:87442716-87442735 Msa1133710:intron 30.0%
TTTAACGAGGCTTATATCAA+AGG - chr7_3:87442729-87442748 Msa1133710:intron 30.0%
AATTACTCCCACTACTAAAT+AGG - chr7_3:87442989-87443008 Msa1133710:CDS 30.0%
GAATATGACCTATTTAGTAG+TGG + chr7_3:87443000-87443019 None:intergenic 30.0%
ATAAAACGCTACCATAAACA+TGG + chr7_3:87443090-87443109 None:intergenic 30.0%
! ATTTTCTCTTGGGAGAAATT+AGG + chr7_3:87443515-87443534 None:intergenic 30.0%
CTCTTTACACAAAATCCCAA+AGG - chr7_3:87441354-87441373 Msa1133710:three_prime_UTR 35.0%
CTGTAGTGAAGGAAGATATA+AGG + chr7_3:87441416-87441435 None:intergenic 35.0%
! GGTTAGAAGAATTGATGGTT+TGG + chr7_3:87441448-87441467 None:intergenic 35.0%
TGATCGGTTAGAAGAATTGA+TGG + chr7_3:87441453-87441472 None:intergenic 35.0%
TCCAACACCATTAATCACTT+TGG - chr7_3:87441574-87441593 Msa1133710:exon 35.0%
ACCAAAGTGATTAATGGTGT+TGG + chr7_3:87441578-87441597 None:intergenic 35.0%
AACACCATTAATCACTTTGG+TGG - chr7_3:87441577-87441596 Msa1133710:CDS 35.0%
TCTACCACCAAAGTGATTAA+TGG + chr7_3:87441584-87441603 None:intergenic 35.0%
!! TTTTTGGATCTGTGATGATG+GGG + chr7_3:87441624-87441643 None:intergenic 35.0%
! CTTTTTGGATCTGTGATGAT+GGG + chr7_3:87441625-87441644 None:intergenic 35.0%
! TCTTTTTGGATCTGTGATGA+TGG + chr7_3:87441626-87441645 None:intergenic 35.0%
! TGGACAAGTTTAAGGTTGAT+GGG + chr7_3:87441700-87441719 None:intergenic 35.0%
! ATGGACAAGTTTAAGGTTGA+TGG + chr7_3:87441701-87441720 None:intergenic 35.0%
!!! CTTTGAAGCAGTGTTTTTCT+TGG + chr7_3:87441731-87441750 None:intergenic 35.0%
AAATATCTTGACGAAGTAGG+AGG + chr7_3:87441934-87441953 None:intergenic 35.0%
AGCAAATATCTTGACGAAGT+AGG + chr7_3:87441937-87441956 None:intergenic 35.0%
ACTTCGTCAAGATATTTGCT+TGG - chr7_3:87441937-87441956 Msa1133710:intron 35.0%
CCTTAGTTAAACCCAAAACA+GGG + chr7_3:87441999-87442018 None:intergenic 35.0%
ACCTTAGTTAAACCCAAAAC+AGG + chr7_3:87442000-87442019 None:intergenic 35.0%
!!! TGTACTAGATTTTGGAACAG+AGG + chr7_3:87442097-87442116 None:intergenic 35.0%
! GTGAATTTTGTTGCAGATTG+TGG - chr7_3:87442248-87442267 Msa1133710:intron 35.0%
TACACTGTAAAGGTTGTGAA+GGG - chr7_3:87442286-87442305 Msa1133710:intron 35.0%
TGATCAGACCATCAATCAAA+TGG - chr7_3:87442372-87442391 Msa1133710:intron 35.0%
AGGCTTATATCAAAGGACAA+AGG - chr7_3:87442736-87442755 Msa1133710:intron 35.0%
ATAATGATCCATAACCAGTG+AGG - chr7_3:87442785-87442804 Msa1133710:intron 35.0%
! CATTGGTAATTAAATGGGCA+GGG - chr7_3:87443152-87443171 Msa1133710:CDS 35.0%
! ATTGGTAATTAAATGGGCAG+GGG - chr7_3:87443153-87443172 Msa1133710:CDS 35.0%
TGAAGAGGAAAATAGACTGT+TGG - chr7_3:87443350-87443369 Msa1133710:CDS 35.0%
! GTATGCTTTGAGTCTGAATT+AGG - chr7_3:87443380-87443399 Msa1133710:CDS 35.0%
! AATGCCATTTCTCATCACAA+CGG - chr7_3:87443598-87443617 Msa1133710:five_prime_UTR 35.0%
CTCTTTACACAAAATCCCAA+AGG - chr7_3:87441354-87441373 Msa1133710:three_prime_UTR 35.0%
CTGTAGTGAAGGAAGATATA+AGG + chr7_3:87441416-87441435 None:intergenic 35.0%
! GGTTAGAAGAATTGATGGTT+TGG + chr7_3:87441448-87441467 None:intergenic 35.0%
TGATCGGTTAGAAGAATTGA+TGG + chr7_3:87441453-87441472 None:intergenic 35.0%
TCCAACACCATTAATCACTT+TGG - chr7_3:87441574-87441593 Msa1133710:exon 35.0%
ACCAAAGTGATTAATGGTGT+TGG + chr7_3:87441578-87441597 None:intergenic 35.0%
AACACCATTAATCACTTTGG+TGG - chr7_3:87441577-87441596 Msa1133710:CDS 35.0%
TCTACCACCAAAGTGATTAA+TGG + chr7_3:87441584-87441603 None:intergenic 35.0%
!! TTTTTGGATCTGTGATGATG+GGG + chr7_3:87441624-87441643 None:intergenic 35.0%
! CTTTTTGGATCTGTGATGAT+GGG + chr7_3:87441625-87441644 None:intergenic 35.0%
! TCTTTTTGGATCTGTGATGA+TGG + chr7_3:87441626-87441645 None:intergenic 35.0%
! TGGACAAGTTTAAGGTTGAT+GGG + chr7_3:87441700-87441719 None:intergenic 35.0%
! ATGGACAAGTTTAAGGTTGA+TGG + chr7_3:87441701-87441720 None:intergenic 35.0%
!!! CTTTGAAGCAGTGTTTTTCT+TGG + chr7_3:87441731-87441750 None:intergenic 35.0%
AAATATCTTGACGAAGTAGG+AGG + chr7_3:87441934-87441953 None:intergenic 35.0%
AGCAAATATCTTGACGAAGT+AGG + chr7_3:87441937-87441956 None:intergenic 35.0%
ACTTCGTCAAGATATTTGCT+TGG - chr7_3:87441937-87441956 Msa1133710:intron 35.0%
CCTTAGTTAAACCCAAAACA+GGG + chr7_3:87441999-87442018 None:intergenic 35.0%
ACCTTAGTTAAACCCAAAAC+AGG + chr7_3:87442000-87442019 None:intergenic 35.0%
!!! TGTACTAGATTTTGGAACAG+AGG + chr7_3:87442097-87442116 None:intergenic 35.0%
! GTGAATTTTGTTGCAGATTG+TGG - chr7_3:87442248-87442267 Msa1133710:intron 35.0%
TACACTGTAAAGGTTGTGAA+GGG - chr7_3:87442286-87442305 Msa1133710:intron 35.0%
TGATCAGACCATCAATCAAA+TGG - chr7_3:87442372-87442391 Msa1133710:intron 35.0%
AGGCTTATATCAAAGGACAA+AGG - chr7_3:87442736-87442755 Msa1133710:intron 35.0%
ATAATGATCCATAACCAGTG+AGG - chr7_3:87442785-87442804 Msa1133710:intron 35.0%
! CATTGGTAATTAAATGGGCA+GGG - chr7_3:87443152-87443171 Msa1133710:CDS 35.0%
! ATTGGTAATTAAATGGGCAG+GGG - chr7_3:87443153-87443172 Msa1133710:CDS 35.0%
TGAAGAGGAAAATAGACTGT+TGG - chr7_3:87443350-87443369 Msa1133710:CDS 35.0%
! GTATGCTTTGAGTCTGAATT+AGG - chr7_3:87443380-87443399 Msa1133710:CDS 35.0%
! AATGCCATTTCTCATCACAA+CGG - chr7_3:87443598-87443617 Msa1133710:five_prime_UTR 35.0%
GAAAGAGATAGGTATGGAAG+TGG + chr7_3:87441308-87441327 None:intergenic 40.0%
!! TGTGTAAAGAGTGCTTGACA+TGG + chr7_3:87441345-87441364 None:intergenic 40.0%
GGTTAGAGATTCTGTAGTGA+AGG + chr7_3:87441427-87441446 None:intergenic 40.0%
GTTAAGACATATGGCTGTTG+AGG + chr7_3:87441521-87441540 None:intergenic 40.0%
! TCTCTTGCTGGAGTTCTTTT+TGG + chr7_3:87441640-87441659 None:intergenic 40.0%
!! AGTTTAAGGTTGATGGGTGA+AGG + chr7_3:87441694-87441713 None:intergenic 40.0%
GGAGTGATTAAATCAGAAGG+TGG + chr7_3:87441913-87441932 None:intergenic 40.0%
GGAGGAGTGATTAAATCAGA+AGG + chr7_3:87441916-87441935 None:intergenic 40.0%
!!! CCCTGTTTTGGGTTTAACTA+AGG - chr7_3:87441996-87442015 Msa1133710:intron 40.0%
CATGAAACAAACAACAGACC+TGG + chr7_3:87442211-87442230 None:intergenic 40.0%
! TGTTGCAGATTGTGGTGTTA+AGG - chr7_3:87442256-87442275 Msa1133710:intron 40.0%
! GTTGCAGATTGTGGTGTTAA+GGG - chr7_3:87442257-87442276 Msa1133710:intron 40.0%
AGGGTTTCTCTACACTGTAA+AGG - chr7_3:87442276-87442295 Msa1133710:intron 40.0%
CTACACTGTAAAGGTTGTGA+AGG - chr7_3:87442285-87442304 Msa1133710:intron 40.0%
AAACATCTCTCCAGAATGCA+AGG - chr7_3:87442318-87442337 Msa1133710:intron 40.0%
GATTTGCATACCTTGCATTC+TGG + chr7_3:87442331-87442350 None:intergenic 40.0%
!! AACTCTAAGACATGTCTTGC+AGG + chr7_3:87442923-87442942 None:intergenic 40.0%
! GCATTGGTAATTAAATGGGC+AGG - chr7_3:87443151-87443170 Msa1133710:CDS 40.0%
ACCAACTACTGTAACCTTCT+TGG + chr7_3:87443206-87443225 None:intergenic 40.0%
TGTAACTCCATTGAGCGTAA+TGG - chr7_3:87443228-87443247 Msa1133710:CDS 40.0%
CGTAATGGCAAGCATATCAA+AGG - chr7_3:87443243-87443262 Msa1133710:CDS 40.0%
AGGTGAAGACTGCACAAATT+TGG - chr7_3:87443263-87443282 Msa1133710:CDS 40.0%
CCAATTGATGAAGCAACTTC+TGG + chr7_3:87443289-87443308 None:intergenic 40.0%
CCAGAAGTTGCTTCATCAAT+TGG - chr7_3:87443286-87443305 Msa1133710:CDS 40.0%
GTTGCTTCATCAATTGGATC+TGG - chr7_3:87443292-87443311 Msa1133710:CDS 40.0%
! ATGCCATTTCTCATCACAAC+GGG - chr7_3:87443599-87443618 Msa1133710:five_prime_UTR 40.0%
GAAAGAGATAGGTATGGAAG+TGG + chr7_3:87441308-87441327 None:intergenic 40.0%
!! TGTGTAAAGAGTGCTTGACA+TGG + chr7_3:87441345-87441364 None:intergenic 40.0%
GGTTAGAGATTCTGTAGTGA+AGG + chr7_3:87441427-87441446 None:intergenic 40.0%
GTTAAGACATATGGCTGTTG+AGG + chr7_3:87441521-87441540 None:intergenic 40.0%
! TCTCTTGCTGGAGTTCTTTT+TGG + chr7_3:87441640-87441659 None:intergenic 40.0%
!! AGTTTAAGGTTGATGGGTGA+AGG + chr7_3:87441694-87441713 None:intergenic 40.0%
GGAGTGATTAAATCAGAAGG+TGG + chr7_3:87441913-87441932 None:intergenic 40.0%
GGAGGAGTGATTAAATCAGA+AGG + chr7_3:87441916-87441935 None:intergenic 40.0%
!!! CCCTGTTTTGGGTTTAACTA+AGG - chr7_3:87441996-87442015 Msa1133710:intron 40.0%
CATGAAACAAACAACAGACC+TGG + chr7_3:87442211-87442230 None:intergenic 40.0%
! TGTTGCAGATTGTGGTGTTA+AGG - chr7_3:87442256-87442275 Msa1133710:intron 40.0%
! GTTGCAGATTGTGGTGTTAA+GGG - chr7_3:87442257-87442276 Msa1133710:intron 40.0%
AGGGTTTCTCTACACTGTAA+AGG - chr7_3:87442276-87442295 Msa1133710:intron 40.0%
CTACACTGTAAAGGTTGTGA+AGG - chr7_3:87442285-87442304 Msa1133710:intron 40.0%
AAACATCTCTCCAGAATGCA+AGG - chr7_3:87442318-87442337 Msa1133710:intron 40.0%
GATTTGCATACCTTGCATTC+TGG + chr7_3:87442331-87442350 None:intergenic 40.0%
!! AACTCTAAGACATGTCTTGC+AGG + chr7_3:87442923-87442942 None:intergenic 40.0%
! GCATTGGTAATTAAATGGGC+AGG - chr7_3:87443151-87443170 Msa1133710:CDS 40.0%
ACCAACTACTGTAACCTTCT+TGG + chr7_3:87443206-87443225 None:intergenic 40.0%
TGTAACTCCATTGAGCGTAA+TGG - chr7_3:87443228-87443247 Msa1133710:CDS 40.0%
CGTAATGGCAAGCATATCAA+AGG - chr7_3:87443243-87443262 Msa1133710:CDS 40.0%
AGGTGAAGACTGCACAAATT+TGG - chr7_3:87443263-87443282 Msa1133710:CDS 40.0%
CCAATTGATGAAGCAACTTC+TGG + chr7_3:87443289-87443308 None:intergenic 40.0%
CCAGAAGTTGCTTCATCAAT+TGG - chr7_3:87443286-87443305 Msa1133710:CDS 40.0%
GTTGCTTCATCAATTGGATC+TGG - chr7_3:87443292-87443311 Msa1133710:CDS 40.0%
! ATGCCATTTCTCATCACAAC+GGG - chr7_3:87443599-87443618 Msa1133710:five_prime_UTR 40.0%
! GCTTGGTGAGACAGTTTCTT+TGG - chr7_3:87441954-87441973 Msa1133710:intron 45.0%
GGTGAGACAGTTTCTTTGGA+TGG - chr7_3:87441958-87441977 Msa1133710:intron 45.0%
GAGAGAGAGAGATACTAACC+TGG + chr7_3:87442125-87442144 None:intergenic 45.0%
GAATGTGTACTCAAGCTCCT+CGG - chr7_3:87442175-87442194 Msa1133710:intron 45.0%
CTGTAAAGGTTGTGAAGGGA+AGG - chr7_3:87442290-87442309 Msa1133710:intron 45.0%
AAGGTTGTGAAGGGAAGGTT+AGG - chr7_3:87442295-87442314 Msa1133710:intron 45.0%
TGATCCATAACCAGTGAGGT+TGG - chr7_3:87442789-87442808 Msa1133710:intron 45.0%
! AGATCCAACCTCACTGGTTA+TGG + chr7_3:87442796-87442815 None:intergenic 45.0%
TAACCAGTGAGGTTGGATCT+AGG - chr7_3:87442796-87442815 Msa1133710:intron 45.0%
GGCTGCAAAGTCTATGTTGA+AGG + chr7_3:87443185-87443204 None:intergenic 45.0%
CATAGACTTTGCAGCCAAGA+AGG - chr7_3:87443189-87443208 Msa1133710:CDS 45.0%
GCCAAGAAGGTTACAGTAGT+TGG - chr7_3:87443202-87443221 Msa1133710:CDS 45.0%
ATGCTTGCCATTACGCTCAA+TGG + chr7_3:87443238-87443257 None:intergenic 45.0%
TCACCCGTTGTGATGAGAAA+TGG + chr7_3:87443605-87443624 None:intergenic 45.0%
! GCTTGGTGAGACAGTTTCTT+TGG - chr7_3:87441954-87441973 Msa1133710:intron 45.0%
GGTGAGACAGTTTCTTTGGA+TGG - chr7_3:87441958-87441977 Msa1133710:intron 45.0%
GAGAGAGAGAGATACTAACC+TGG + chr7_3:87442125-87442144 None:intergenic 45.0%
GAATGTGTACTCAAGCTCCT+CGG - chr7_3:87442175-87442194 Msa1133710:intron 45.0%
CTGTAAAGGTTGTGAAGGGA+AGG - chr7_3:87442290-87442309 Msa1133710:intron 45.0%
AAGGTTGTGAAGGGAAGGTT+AGG - chr7_3:87442295-87442314 Msa1133710:intron 45.0%
TGATCCATAACCAGTGAGGT+TGG - chr7_3:87442789-87442808 Msa1133710:intron 45.0%
! AGATCCAACCTCACTGGTTA+TGG + chr7_3:87442796-87442815 None:intergenic 45.0%
TAACCAGTGAGGTTGGATCT+AGG - chr7_3:87442796-87442815 Msa1133710:intron 45.0%
GGCTGCAAAGTCTATGTTGA+AGG + chr7_3:87443185-87443204 None:intergenic 45.0%
CATAGACTTTGCAGCCAAGA+AGG - chr7_3:87443189-87443208 Msa1133710:CDS 45.0%
GCCAAGAAGGTTACAGTAGT+TGG - chr7_3:87443202-87443221 Msa1133710:CDS 45.0%
ATGCTTGCCATTACGCTCAA+TGG + chr7_3:87443238-87443257 None:intergenic 45.0%
TCACCCGTTGTGATGAGAAA+TGG + chr7_3:87443605-87443624 None:intergenic 45.0%
!! GATCTGTGATGATGGGGTTG+TGG + chr7_3:87441618-87441637 None:intergenic 50.0%
GTGTCAGTGAGATCTCTTGC+TGG + chr7_3:87441652-87441671 None:intergenic 50.0%
ATCTCACTGACACTGCTCCT+AGG - chr7_3:87441659-87441678 Msa1133710:CDS 50.0%
!! AGGTTGATGGGTGAAGGAGA+AGG + chr7_3:87441688-87441707 None:intergenic 50.0%
!! CTCCTCGGTTGATGATAACC+AGG - chr7_3:87442190-87442209 Msa1133710:intron 50.0%
GACCTGGTTATCATCAACCG+AGG + chr7_3:87442195-87442214 None:intergenic 50.0%
TCTCCTAGATCCAACCTCAC+TGG + chr7_3:87442802-87442821 None:intergenic 50.0%
!! GATCTGTGATGATGGGGTTG+TGG + chr7_3:87441618-87441637 None:intergenic 50.0%
GTGTCAGTGAGATCTCTTGC+TGG + chr7_3:87441652-87441671 None:intergenic 50.0%
ATCTCACTGACACTGCTCCT+AGG - chr7_3:87441659-87441678 Msa1133710:CDS 50.0%
!! AGGTTGATGGGTGAAGGAGA+AGG + chr7_3:87441688-87441707 None:intergenic 50.0%
!! CTCCTCGGTTGATGATAACC+AGG - chr7_3:87442190-87442209 Msa1133710:intron 50.0%
GACCTGGTTATCATCAACCG+AGG + chr7_3:87442195-87442214 None:intergenic 50.0%
TCTCCTAGATCCAACCTCAC+TGG + chr7_3:87442802-87442821 None:intergenic 50.0%
GATGGGGTTGTGGCGATCAA+TGG + chr7_3:87441608-87441627 None:intergenic 55.0%
GGTGAAGGAGAAGGTGACCT+AGG + chr7_3:87441679-87441698 None:intergenic 55.0%
GATGGGGTTGTGGCGATCAA+TGG + chr7_3:87441608-87441627 None:intergenic 55.0%
GGTGAAGGAGAAGGTGACCT+AGG + chr7_3:87441679-87441698 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 87441277 87443648 87441277 ID=Msa1133710;Name=Msa1133710
chr7_3 mRNA 87441277 87443648 87441277 ID=Msa1133710-mRNA-1;Parent=Msa1133710;Name=Msa1133710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=207|1|1|1|1|1|3|300|297
chr7_3 exon 87441277 87441752 87441277 ID=Msa1133710-mRNA-1:exon:26339;Parent=Msa1133710-mRNA-1
chr7_3 exon 87442586 87442661 87442586 ID=Msa1133710-mRNA-1:exon:26338;Parent=Msa1133710-mRNA-1
chr7_3 exon 87442800 87443648 87442800 ID=Msa1133710-mRNA-1:exon:26337;Parent=Msa1133710-mRNA-1
chr7_3 five_prime_UTR 87443442 87443648 87443442 ID=Msa1133710-mRNA-1:five_prime_utr;Parent=Msa1133710-mRNA-1
chr7_3 CDS 87442800 87443441 87442800 ID=Msa1133710-mRNA-1:cds;Parent=Msa1133710-mRNA-1
chr7_3 CDS 87442586 87442661 87442586 ID=Msa1133710-mRNA-1:cds;Parent=Msa1133710-mRNA-1
chr7_3 CDS 87441577 87441752 87441577 ID=Msa1133710-mRNA-1:cds;Parent=Msa1133710-mRNA-1
chr7_3 three_prime_UTR 87441277 87441576 87441277 ID=Msa1133710-mRNA-1:three_prime_utr;Parent=Msa1133710-mRNA-1
Gene Sequence

>Msa1133710

ATGAAAGGCATTGAAATCTTCTGTGCATCACAAGCCTCAACAGCCATATGTCTTAACACTAATCATGCTTCTTCTTCTTCTACTTCATCTTCCAACACCATTAATCACTTTGGTGGTAGAGCCATTGATCGCCACAACCCCATCATCACAGATCCAAAAAGAACTCCAGCAAGAGATCTCACTGACACTGCTCCTAGGTCACCTTCTCCTTCACCCATCAACCTTAAACTTGTCCATGAAAAAGCCAAGAAAAACACTGCTTCAAAGCTTAGTGATAAGAAAAAGAAAAATGCAACAAAGAGTACTCATGAATATGATCAGAAGAAGAAGAAAAGTACTACTACAACAGAAAAAGTGACTGAACATATTGCAAACAATTACTCTTCAAAACCAGTTGATAGTATTTTAAGAAGGAGTAGGGTTAAGCCACCTTCTGATTTAATCACTCCTCCTACTTCGTCAAGATATTTGCTTGGTGAGACAGTTTCTTTGGATGGTGTATTAGATTATGACCCTGTTTTGGGTTTAACTAAGGTTGATGATAATAAAAAGAAAGCTCAAGTGCTTCATGAAGATGAAGATAAACATTCATCTAAACAGTATTCAAGCTCCTCTGTTCCAAAATCTAGTACAACAAACCAGATTGTGGTGTTAAGGGTTTCTCTACACTGTAAAGGTTGTGAAGGGAAGGTTAGGAAACATCTCTCCAGAATGCAAGGGGTAACGTCCTTCAACATAGACTTTGCAGCCAAGAAGGTTACAGTAGTTGGTGATGTAACTCCATTGAGCGTAATGGCAAGCATATCAAAGGTGAAGACTGCACAAATTTGGCCAGAAGTTGCTTCATCAATTGGATCTGGTGCTGCTGAAGCAAAGAAAACAAATATGATCTAA

Protein sequence

>Msa1133710

MKGIEIFCASQASTAICLNTNHASSSSTSSSNTINHFGGRAIDRHNPIITDPKRTPARDLTDTAPRSPSPSPINLKLVHEKAKKNTASKLSDKKKKNATKSTHEYDQKKKKSTTTTEKVTEHIANNYSSKPVDSILRRSRVKPPSDLITPPTSSRYLLGETVSLDGVLDYDPVLGLTKVDDNKKKAQVLHEDEDKHSSKQYSSSSVPKSSTTNQIVVLRVSLHCKGCEGKVRKHLSRMQGVTSFNIDFAAKKVTVVGDVTPLSVMASISKVKTAQIWPEVASSIGSGAAEAKKTNMI*