Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921160 | XP_013452627.1 | 80.645 | 217 | 39 | 1 | 4 | 217 | 1 | 217 | 1.13e-121 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921160 | sp|O82711|PIP22_PEA | 54.545 | 209 | 88 | 3 | 4 | 207 | 1 | 207 | 9.38e-69 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0921160 | 0.803545 | 3.312226e-49 | -8.615850e-47 |
| Msa0014590 | Msa0921160 | 0.804861 | 1.762736e-49 | -8.615850e-47 |
| Msa0063540 | Msa0921160 | 0.821128 | 4.759167e-53 | -8.615850e-47 |
| Msa0074620 | Msa0921160 | 0.817234 | 3.665364e-52 | -8.615850e-47 |
| Msa0106540 | Msa0921160 | 0.815135 | 1.079741e-51 | -8.615850e-47 |
| Msa0768720 | Msa0921160 | 0.800128 | 1.666442e-48 | -8.615850e-47 |
| Msa0804170 | Msa0921160 | 0.825671 | 4.129016e-54 | -8.615850e-47 |
| Msa0823310 | Msa0921160 | -0.803319 | 3.689783e-49 | -8.615850e-47 |
| Msa0170990 | Msa0921160 | 0.808694 | 2.730252e-50 | -8.615850e-47 |
| Msa0190890 | Msa0921160 | 0.805739 | 1.154026e-49 | -8.615850e-47 |
| Msa0207640 | Msa0921160 | 0.801519 | 8.664786e-49 | -8.615850e-47 |
| Msa0269240 | Msa0921160 | 0.802809 | 4.703385e-49 | -8.615850e-47 |
| Msa0299030 | Msa0921160 | 0.804192 | 2.430662e-49 | -8.615850e-47 |
| Msa0349930 | Msa0921160 | 0.823210 | 1.565548e-53 | -8.615850e-47 |
| Msa0549970 | Msa0921160 | 0.803069 | 4.157261e-49 | -8.615850e-47 |
| Msa0862230 | Msa0921160 | -0.800675 | 1.289319e-48 | -8.615850e-47 |
| Msa0893840 | Msa0921160 | 0.815420 | 9.332338e-52 | -8.615850e-47 |
| Msa0896920 | Msa0921160 | 0.800173 | 1.631773e-48 | -8.615850e-47 |
| Msa0896950 | Msa0921160 | 0.801910 | 7.204520e-49 | -8.615850e-47 |
| Msa0921160 | Msa0946010 | 0.806090 | 9.740402e-50 | -8.615850e-47 |
| Msa0921160 | Msa1030320 | 0.808841 | 2.540658e-50 | -8.615850e-47 |
| Msa0921160 | Msa1076830 | 0.811918 | 5.505770e-51 | -8.615850e-47 |
| Msa0921160 | Msa1157210 | 0.814812 | 1.273339e-51 | -8.615850e-47 |
| Msa0921160 | Msa1165460 | 0.800829 | 1.199532e-48 | -8.615850e-47 |
| Msa0921160 | Msa1179190 | 0.808584 | 2.882404e-50 | -8.615850e-47 |
| Msa0921160 | Msa1225850 | 0.802897 | 4.511993e-49 | -8.615850e-47 |
| Msa0921160 | Msa1255710 | 0.816194 | 6.272006e-52 | -8.615850e-47 |
| Msa0921160 | Msa1317240 | -0.806323 | 8.699440e-50 | -8.615850e-47 |
| Msa0921160 | Msa1359890 | -0.807278 | 5.464279e-50 | -8.615850e-47 |
| Msa0921160 | Msa1376070 | 0.810342 | 1.208840e-50 | -8.615850e-47 |
| Msa0921160 | Msa1387480 | 0.808285 | 3.338992e-50 | -8.615850e-47 |
| Msa0921160 | Msa1405830 | 0.816145 | 6.429649e-52 | -8.615850e-47 |
| Msa0921160 | Msa1407670 | 0.801387 | 9.222517e-49 | -8.615850e-47 |
| Msa0921160 | Msa1413020 | 0.824056 | 9.923995e-54 | -8.615850e-47 |
| Msa0921160 | Msa1459610 | 0.820647 | 6.142598e-53 | -8.615850e-47 |
| Msa0921160 | Msa1461660 | 0.802499 | 5.449740e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921160 | MtrunA17_Chr6g0477741 | 80.645 | 217 | 39 | 1 | 4 | 217 | 1 | 217 | 1.04e-125 | 354 |
| Msa0921160 | MtrunA17_Chr6g0477751 | 79.167 | 216 | 43 | 1 | 4 | 217 | 1 | 216 | 2.83e-125 | 353 |
| Msa0921160 | MtrunA17_Chr6g0452491 | 78.505 | 214 | 42 | 1 | 4 | 217 | 1 | 210 | 4.05e-122 | 344 |
| Msa0921160 | MtrunA17_Chr6g0452521 | 77.561 | 205 | 45 | 1 | 2 | 205 | 31 | 235 | 1.38e-116 | 332 |
| Msa0921160 | MtrunA17_Chr6g0476831 | 56.872 | 211 | 85 | 3 | 4 | 210 | 1 | 209 | 8.17e-68 | 208 |
| Msa0921160 | MtrunA17_Chr6g0476871 | 57.009 | 214 | 86 | 3 | 4 | 211 | 1 | 214 | 1.10e-60 | 189 |
| Msa0921160 | MtrunA17_Chr1g0163381 | 44.444 | 216 | 108 | 7 | 4 | 209 | 1 | 214 | 3.54e-49 | 160 |
| Msa0921160 | MtrunA17_Chr6g0476791 | 44.907 | 216 | 107 | 6 | 1 | 207 | 1 | 213 | 6.67e-47 | 154 |
| Msa0921160 | MtrunA17_Chr6g0476921 | 41.848 | 184 | 94 | 6 | 30 | 206 | 26 | 203 | 2.00e-32 | 116 |
| Msa0921160 | MtrunA17_Chr6g0476951 | 43.750 | 208 | 98 | 9 | 4 | 205 | 1 | 195 | 2.27e-32 | 116 |
| Msa0921160 | MtrunA17_Chr6g0476961 | 42.439 | 205 | 100 | 8 | 8 | 205 | 1 | 194 | 2.07e-30 | 111 |
| Msa0921160 | MtrunA17_Chr6g0477281 | 41.546 | 207 | 89 | 6 | 4 | 205 | 1 | 180 | 4.77e-29 | 107 |
| Msa0921160 | MtrunA17_Chr6g0457121 | 56.250 | 96 | 40 | 2 | 4 | 98 | 26 | 120 | 1.26e-28 | 104 |
| Msa0921160 | MtrunA17_Chr3g0104591 | 38.421 | 190 | 100 | 7 | 32 | 212 | 29 | 210 | 1.47e-22 | 91.3 |
| Msa0921160 | MtrunA17_Chr6g0467611 | 36.444 | 225 | 118 | 12 | 4 | 212 | 1 | 216 | 3.53e-22 | 90.5 |
| Msa0921160 | MtrunA17_Chr6g0467621 | 37.391 | 230 | 109 | 13 | 4 | 212 | 1 | 216 | 6.46e-22 | 89.7 |
| Msa0921160 | MtrunA17_Chr6g0467761 | 36.889 | 225 | 117 | 12 | 4 | 212 | 1 | 216 | 6.75e-22 | 89.7 |
| Msa0921160 | MtrunA17_Chr6g0467771 | 36.239 | 218 | 115 | 9 | 4 | 208 | 1 | 207 | 9.75e-22 | 89.4 |
| Msa0921160 | MtrunA17_Chr6g0467781 | 36.686 | 169 | 81 | 9 | 55 | 209 | 13 | 169 | 1.79e-14 | 68.6 |
| Msa0921160 | MtrunA17_Chr2g0314431 | 33.175 | 211 | 109 | 12 | 4 | 203 | 5 | 194 | 4.94e-13 | 65.5 |
| Msa0921160 | MtrunA17_Chr6g0481911 | 31.863 | 204 | 125 | 9 | 10 | 205 | 6 | 203 | 9.56e-13 | 64.7 |
| Msa0921160 | MtrunA17_Chr6g0476821 | 40.000 | 130 | 68 | 6 | 91 | 215 | 21 | 145 | 3.52e-12 | 62.0 |
| Msa0921160 | MtrunA17_Chr2g0314441 | 32.394 | 213 | 116 | 11 | 3 | 205 | 4 | 198 | 7.31e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTAGGGTTATCACTTTC+TGG | 0.161357 | 6_2:-58018198 | None:intergenic |
| CTGAATCACCAACTTTGTTT+AGG | 0.218681 | 6_2:-58018233 | None:intergenic |
| ATGGATCTGGTAATGTTTAT+AGG | 0.227385 | 6_2:+58018514 | Msa0921160:CDS |
| ATACAAGATATTGCTGTAAT+AGG | 0.268557 | 6_2:+58018273 | Msa0921160:CDS |
| CCTCTGATTGTCTCTATTCC+AGG | 0.274561 | 6_2:-58018471 | None:intergenic |
| ACTGGAGATTGTGCTTATAT+TGG | 0.278706 | 6_2:+58018558 | Msa0921160:CDS |
| TGAATCACCAACTTTGTTTA+GGG | 0.302425 | 6_2:-58018232 | None:intergenic |
| TCTAGTATGGTGAATTTAAC+TGG | 0.302951 | 6_2:-58018300 | None:intergenic |
| AGCATTGTTTGGTGAAATAT+TGG | 0.343828 | 6_2:-58018112 | None:intergenic |
| GAGGGATAAAATAGGTTTCA+TGG | 0.353544 | 6_2:-58018058 | None:intergenic |
| GAGCAAGTATTGGACATAAA+TGG | 0.360089 | 6_2:+58018138 | Msa0921160:CDS |
| GGACTGCAACTGTTTAGTTC+TGG | 0.363850 | 6_2:+58018579 | Msa0921160:CDS |
| TACTAGAACTCATACTAAAT+AGG | 0.365223 | 6_2:-58018696 | None:intergenic |
| TGGATCTGGTAATGTTTATA+GGG | 0.365536 | 6_2:+58018515 | Msa0921160:CDS |
| GATGCTGCATCTATTAAATC+TGG | 0.371349 | 6_2:+58018660 | Msa0921160:CDS |
| ATATCTTGTATGACAGTTAC+TGG | 0.377987 | 6_2:-58018261 | None:intergenic |
| TCTATTCCAGGATAGTTTGC+AGG | 0.388966 | 6_2:-58018459 | None:intergenic |
| TATTGGTGATAAAAGCAAAT+AGG | 0.390605 | 6_2:-58018095 | None:intergenic |
| TTTGATGATTCAGCACAATC+TGG | 0.398835 | 6_2:-58018381 | None:intergenic |
| ACTTGCTCAACAGCATTGTT+TGG | 0.401563 | 6_2:-58018123 | None:intergenic |
| TCTGGTAATGTTTATAGGGT+TGG | 0.416063 | 6_2:+58018519 | Msa0921160:CDS |
| GAAAGGGTGAGGGATAAAAT+AGG | 0.419184 | 6_2:-58018066 | None:intergenic |
| CAACTAGCTTGTGTTGGTAT+TGG | 0.427835 | 6_2:+58018432 | Msa0921160:CDS |
| CTAGCTTGTGTTGGTATTGG+TGG | 0.441922 | 6_2:+58018435 | Msa0921160:CDS |
| TATTGGCCACCAGGGGTAAG+GGG | 0.451454 | 6_2:-58018165 | None:intergenic |
| GGTGGTCCTGCAAACTATCC+TGG | 0.456364 | 6_2:+58018453 | Msa0921160:CDS |
| TTAATAGTGAAGCATGGATC+TGG | 0.460803 | 6_2:+58018501 | Msa0921160:CDS |
| AGTATTGGCCACCAGGGGTA+AGG | 0.463701 | 6_2:-58018167 | None:intergenic |
| AGGGTTAGTCCTCCAATACT+AGG | 0.474991 | 6_2:-58018213 | None:intergenic |
| ATTGGCCACCAGGGGTAAGG+GGG | 0.476496 | 6_2:-58018164 | None:intergenic |
| AGCAAATAGGAAGAAGGAAA+GGG | 0.481208 | 6_2:-58018082 | None:intergenic |
| CAATGCTGTTGAGCAAGTAT+TGG | 0.481709 | 6_2:+58018128 | Msa0921160:CDS |
| TTTCTGGTAAAATGTAGTAT+TGG | 0.484403 | 6_2:-58018182 | None:intergenic |
| AAGCAAATAGGAAGAAGGAA+AGG | 0.491844 | 6_2:-58018083 | None:intergenic |
| GAAAGTGATAACCCTAGTAT+TGG | 0.495230 | 6_2:+58018201 | Msa0921160:CDS |
| AAAATGTAGTATTGGCCACC+AGG | 0.496116 | 6_2:-58018174 | None:intergenic |
| ATTGTGCTGAATCATCAAAA+TGG | 0.497723 | 6_2:+58018385 | Msa0921160:CDS |
| GTATTGGCCACCAGGGGTAA+GGG | 0.502071 | 6_2:-58018166 | None:intergenic |
| AGTGATAACCCTAGTATTGG+AGG | 0.519798 | 6_2:+58018204 | Msa0921160:CDS |
| GATAAAAGCAAATAGGAAGA+AGG | 0.526672 | 6_2:-58018088 | None:intergenic |
| CTGTTTAGTTCTGGTGAAGG+AGG | 0.540270 | 6_2:+58018588 | Msa0921160:CDS |
| ATAGGAAGAAGGAAAGGGTG+AGG | 0.540395 | 6_2:-58018077 | None:intergenic |
| GGACTAACCCTAAACAAAGT+TGG | 0.540688 | 6_2:+58018225 | Msa0921160:CDS |
| GGGTTAGTCCTCCAATACTA+GGG | 0.545234 | 6_2:-58018212 | None:intergenic |
| ATCACTAGTAACATCGTGAC+AGG | 0.548264 | 6_2:+58018327 | Msa0921160:CDS |
| ATACAACAGAATAAGCATCA+AGG | 0.559870 | 6_2:-58018632 | None:intergenic |
| TAGGAAGAAGGAAAGGGTGA+GGG | 0.562566 | 6_2:-58018076 | None:intergenic |
| TACAACAGAATAAGCATCAA+GGG | 0.562914 | 6_2:-58018631 | None:intergenic |
| TTGGCCACCAGGGGTAAGGG+GGG | 0.568615 | 6_2:-58018163 | None:intergenic |
| AGTGAACTCGATCTCAAGAT+CGG | 0.599342 | 6_2:-58018352 | None:intergenic |
| AATACTCAACTAGCTTGTGT+TGG | 0.603192 | 6_2:+58018426 | Msa0921160:CDS |
| CAACTGTTTAGTTCTGGTGA+AGG | 0.626732 | 6_2:+58018585 | Msa0921160:CDS |
| AAATGTAGTATTGGCCACCA+GGG | 0.645099 | 6_2:-58018173 | None:intergenic |
| CCTGGAATAGAGACAATCAG+AGG | 0.673236 | 6_2:+58018471 | Msa0921160:CDS |
| AATGTAGTATTGGCCACCAG+GGG | 0.700291 | 6_2:-58018172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGGTGATAAAAGCAAAT+AGG | - | chr6_2:58018098-58018117 | None:intergenic | 25.0% |
| !! | TTTCTGGTAAAATGTAGTAT+TGG | - | chr6_2:58018185-58018204 | None:intergenic | 25.0% |
| ! | ATACAAGATATTGCTGTAAT+AGG | + | chr6_2:58018273-58018292 | Msa0921160:CDS | 25.0% |
| !! | AAGTTTTTAATAGTGAAGCA+TGG | + | chr6_2:58018495-58018514 | Msa0921160:CDS | 25.0% |
| GATAAAAGCAAATAGGAAGA+AGG | - | chr6_2:58018091-58018110 | None:intergenic | 30.0% | |
| ! | AGCATTGTTTGGTGAAATAT+TGG | - | chr6_2:58018115-58018134 | None:intergenic | 30.0% |
| ! | TGAATCACCAACTTTGTTTA+GGG | - | chr6_2:58018235-58018254 | None:intergenic | 30.0% |
| ATATCTTGTATGACAGTTAC+TGG | - | chr6_2:58018264-58018283 | None:intergenic | 30.0% | |
| TCTAGTATGGTGAATTTAAC+TGG | - | chr6_2:58018303-58018322 | None:intergenic | 30.0% | |
| !! | ACTAGTGATGTTTTCTAGTA+TGG | - | chr6_2:58018316-58018335 | None:intergenic | 30.0% |
| ATTGTGCTGAATCATCAAAA+TGG | + | chr6_2:58018385-58018404 | Msa0921160:CDS | 30.0% | |
| ! | ATGGATCTGGTAATGTTTAT+AGG | + | chr6_2:58018514-58018533 | Msa0921160:CDS | 30.0% |
| ! | TGGATCTGGTAATGTTTATA+GGG | + | chr6_2:58018515-58018534 | Msa0921160:CDS | 30.0% |
| ! | TTATAGGGTTGGATTTTGTT+TGG | + | chr6_2:58018530-58018549 | Msa0921160:CDS | 30.0% |
| TACAACAGAATAAGCATCAA+GGG | - | chr6_2:58018634-58018653 | None:intergenic | 30.0% | |
| ATACAACAGAATAAGCATCA+AGG | - | chr6_2:58018635-58018654 | None:intergenic | 30.0% | |
| GAGGGATAAAATAGGTTTCA+TGG | - | chr6_2:58018061-58018080 | None:intergenic | 35.0% | |
| AGCAAATAGGAAGAAGGAAA+GGG | - | chr6_2:58018085-58018104 | None:intergenic | 35.0% | |
| AAGCAAATAGGAAGAAGGAA+AGG | - | chr6_2:58018086-58018105 | None:intergenic | 35.0% | |
| !! | GAGCAAGTATTGGACATAAA+TGG | + | chr6_2:58018138-58018157 | Msa0921160:CDS | 35.0% |
| ATACTAGGGTTATCACTTTC+TGG | - | chr6_2:58018201-58018220 | None:intergenic | 35.0% | |
| GAAAGTGATAACCCTAGTAT+TGG | + | chr6_2:58018201-58018220 | Msa0921160:CDS | 35.0% | |
| ! | CTGAATCACCAACTTTGTTT+AGG | - | chr6_2:58018236-58018255 | None:intergenic | 35.0% |
| ! | TTTGATGATTCAGCACAATC+TGG | - | chr6_2:58018384-58018403 | None:intergenic | 35.0% |
| ! | AATACTCAACTAGCTTGTGT+TGG | + | chr6_2:58018426-58018445 | Msa0921160:CDS | 35.0% |
| TTAATAGTGAAGCATGGATC+TGG | + | chr6_2:58018501-58018520 | Msa0921160:CDS | 35.0% | |
| ! | TCTGGTAATGTTTATAGGGT+TGG | + | chr6_2:58018519-58018538 | Msa0921160:CDS | 35.0% |
| !! | GGATTTTGTTTGGATACAAC+TGG | + | chr6_2:58018540-58018559 | Msa0921160:CDS | 35.0% |
| ACTGGAGATTGTGCTTATAT+TGG | + | chr6_2:58018558-58018577 | Msa0921160:CDS | 35.0% | |
| GATGCTGCATCTATTAAATC+TGG | + | chr6_2:58018660-58018679 | Msa0921160:CDS | 35.0% | |
| GAAAGGGTGAGGGATAAAAT+AGG | - | chr6_2:58018069-58018088 | None:intergenic | 40.0% | |
| ACTTGCTCAACAGCATTGTT+TGG | - | chr6_2:58018126-58018145 | None:intergenic | 40.0% | |
| CAATGCTGTTGAGCAAGTAT+TGG | + | chr6_2:58018128-58018147 | Msa0921160:CDS | 40.0% | |
| !! | AAATGTAGTATTGGCCACCA+GGG | - | chr6_2:58018176-58018195 | None:intergenic | 40.0% |
| !! | AAAATGTAGTATTGGCCACC+AGG | - | chr6_2:58018177-58018196 | None:intergenic | 40.0% |
| ! | AGTGATAACCCTAGTATTGG+AGG | + | chr6_2:58018204-58018223 | Msa0921160:CDS | 40.0% |
| GGACTAACCCTAAACAAAGT+TGG | + | chr6_2:58018225-58018244 | Msa0921160:CDS | 40.0% | |
| ATCACTAGTAACATCGTGAC+AGG | + | chr6_2:58018327-58018346 | Msa0921160:CDS | 40.0% | |
| AGTGAACTCGATCTCAAGAT+CGG | - | chr6_2:58018355-58018374 | None:intergenic | 40.0% | |
| ! | CAACTAGCTTGTGTTGGTAT+TGG | + | chr6_2:58018432-58018451 | Msa0921160:CDS | 40.0% |
| ! | TCTATTCCAGGATAGTTTGC+AGG | - | chr6_2:58018462-58018481 | None:intergenic | 40.0% |
| !! | CAACTGTTTAGTTCTGGTGA+AGG | + | chr6_2:58018585-58018604 | Msa0921160:CDS | 40.0% |
| TAGGAAGAAGGAAAGGGTGA+GGG | - | chr6_2:58018079-58018098 | None:intergenic | 45.0% | |
| ATAGGAAGAAGGAAAGGGTG+AGG | - | chr6_2:58018080-58018099 | None:intergenic | 45.0% | |
| !! | AATGTAGTATTGGCCACCAG+GGG | - | chr6_2:58018175-58018194 | None:intergenic | 45.0% |
| !! | GGGTTAGTCCTCCAATACTA+GGG | - | chr6_2:58018215-58018234 | None:intergenic | 45.0% |
| !! | AGGGTTAGTCCTCCAATACT+AGG | - | chr6_2:58018216-58018235 | None:intergenic | 45.0% |
| ! | CTAGCTTGTGTTGGTATTGG+TGG | + | chr6_2:58018435-58018454 | Msa0921160:CDS | 45.0% |
| CCTCTGATTGTCTCTATTCC+AGG | - | chr6_2:58018474-58018493 | None:intergenic | 45.0% | |
| CCTGGAATAGAGACAATCAG+AGG | + | chr6_2:58018471-58018490 | Msa0921160:CDS | 45.0% | |
| ! | GGACTGCAACTGTTTAGTTC+TGG | + | chr6_2:58018579-58018598 | Msa0921160:CDS | 45.0% |
| !! | CTGTTTAGTTCTGGTGAAGG+AGG | + | chr6_2:58018588-58018607 | Msa0921160:CDS | 45.0% |
| TATTGGCCACCAGGGGTAAG+GGG | - | chr6_2:58018168-58018187 | None:intergenic | 55.0% | |
| ! | GTATTGGCCACCAGGGGTAA+GGG | - | chr6_2:58018169-58018188 | None:intergenic | 55.0% |
| !! | AGTATTGGCCACCAGGGGTA+AGG | - | chr6_2:58018170-58018189 | None:intergenic | 55.0% |
| GGTGGTCCTGCAAACTATCC+TGG | + | chr6_2:58018453-58018472 | Msa0921160:CDS | 55.0% | |
| AATGGTACCCCCCTTACCCC+TGG | + | chr6_2:58018156-58018175 | Msa0921160:CDS | 60.0% | |
| ATTGGCCACCAGGGGTAAGG+GGG | - | chr6_2:58018167-58018186 | None:intergenic | 60.0% | |
| TTGGCCACCAGGGGTAAGGG+GGG | - | chr6_2:58018166-58018185 | None:intergenic | 65.0% | |
| GGTACCCCCCTTACCCCTGG+TGG | + | chr6_2:58018159-58018178 | Msa0921160:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 58018051 | 58018704 | 58018051 | ID=Msa0921160;Name=Msa0921160 |
| chr6_2 | mRNA | 58018051 | 58018704 | 58018051 | ID=Msa0921160-mRNA-1;Parent=Msa0921160;Name=Msa0921160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|217 |
| chr6_2 | exon | 58018051 | 58018704 | 58018051 | ID=Msa0921160-mRNA-1:exon:8640;Parent=Msa0921160-mRNA-1 |
| chr6_2 | CDS | 58018051 | 58018704 | 58018051 | ID=Msa0921160-mRNA-1:cds;Parent=Msa0921160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
