AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0862230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0862230 MtrunA17_Chr5g0443541 78.421 190 16 2 1 165 1 190 1.28e-101 294
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0862230 AT1G06460.1 29.439 214 96 10 16 176 18 229 2.27e-12 64.7

Find 39 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATACACCATTCTGAAAT+TGG 0.251394 5_4:-61850264 Msa0862230:intron
CATGGCTCTCTTGCATAATT+AGG 0.258582 5_4:+61850444 None:intergenic
GATTCTGCAACATCCATTCT+TGG 0.268622 5_4:+61850116 None:intergenic
CAAAGACTTCACATAGTAAA+TGG 0.272754 5_4:+61851818 None:intergenic
ACGATTGATTCTTTCCTTGC+AGG 0.285486 5_4:+61850411 None:intergenic
CCTTGTATATTCTGTTTGCT+TGG 0.343416 5_4:+61850309 None:intergenic
GTAGACGCTCTACTAGTTCT+TGG 0.370835 5_4:-61849743 Msa0862230:CDS
TATGAAGAAAATGAAGCATT+TGG 0.403591 5_4:+61849705 None:intergenic
GCTTAGGAGATGTGACAATA+AGG 0.409685 5_4:-61850875 Msa0862230:intron
CCACGTTAACTAGCTAGAAA+TGG 0.426131 5_4:-61851791 Msa0862230:exon
ATCTACCCATCTTCTGCCTA+TGG 0.436149 5_4:-61851701 Msa0862230:intron
ATGGACCATATGAGGTTGTT+TGG 0.454708 5_4:-61849662 Msa0862230:CDS
CTTGCAGGTCTTGCAAAACA+TGG 0.457049 5_4:+61850426 None:intergenic
AATTGAGTGGTCGCCAAGAA+TGG 0.465981 5_4:-61850129 Msa0862230:CDS
GTTATCATGGTAGAAGTTCC+TGG 0.470836 5_4:-61850080 Msa0862230:CDS
AGTGGCCAAACAACCTCATA+TGG 0.481163 5_4:+61849657 None:intergenic
ACTAGTTCTTGGAGAGAAGC+AGG 0.485633 5_4:-61849732 Msa0862230:CDS
AGATTACCATAGGCAGAAGA+TGG 0.487818 5_4:+61851695 None:intergenic
AGAAAGTAAATATGTTATCA+TGG 0.491749 5_4:-61850093 Msa0862230:CDS
ACCAATGTGGCTAAATATGA+AGG 0.493398 5_4:-61850468 Msa0862230:CDS
CTCATCACTGGAAGCAAAGT+GGG 0.498257 5_4:+61851729 None:intergenic
CACAAGAGGGAGATACTGTA+TGG 0.508140 5_4:-61849681 Msa0862230:CDS
GTAGTCTGAACTCTGTGCTT+AGG 0.510140 5_4:-61850891 Msa0862230:CDS
GGTAGATGAAATCTCATCAC+TGG 0.521787 5_4:+61851717 None:intergenic
GATACTGTATGGACCATATG+AGG 0.529593 5_4:-61849670 Msa0862230:CDS
ACCTTCATATTTAGCCACAT+TGG 0.536522 5_4:+61850467 None:intergenic
CCAAGCAAACAGAATATACA+AGG 0.537645 5_4:-61850309 Msa0862230:CDS
TTTGACAGATTGTCGATCAA+AGG 0.549000 5_4:-61849765 Msa0862230:intron
GCTAATCACCAATTTCAGAA+TGG 0.565371 5_4:+61850256 None:intergenic
GCTAGAAATGGAGAATGAGT+TGG 0.569649 5_4:-61851779 Msa0862230:exon
TTGCTTGGCCTAGAAAATGA+AGG 0.570216 5_4:+61850324 None:intergenic
CCATTTCTAGCTAGTTAACG+TGG 0.587217 5_4:+61851791 None:intergenic
ATGTCACCCACACTGACACC+AGG 0.596279 5_4:+61850062 None:intergenic
GATTACCATAGGCAGAAGAT+GGG 0.610033 5_4:+61851696 None:intergenic
TCTCATCACTGGAAGCAAAG+TGG 0.610564 5_4:+61851728 None:intergenic
CAACCAATGACTAAAATGCA+AGG 0.630284 5_4:-61850372 Msa0862230:CDS
CTTGGCCTAGAAAATGAAGG+TGG 0.645955 5_4:+61850327 None:intergenic
TCTCCCTATCAGAATTGCAG+TGG 0.656131 5_4:-61850913 Msa0862230:intron
TGTTGCTCCTAAAACCAATG+TGG 0.717404 5_4:-61850481 Msa0862230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTATATCTTGTATTAA+TGG - chr5_4:61849867-61849886 Msa0862230:intron 15.0%
!!! AATTATGATCATTTTGAAAA+AGG + chr5_4:61850334-61850353 None:intergenic 15.0%
!!! TTTTTCAAAATGATCATAAT+TGG - chr5_4:61850333-61850352 Msa0862230:CDS 15.0%
!! TGTAATTATTAACTTTACAT+CGG - chr5_4:61850918-61850937 Msa0862230:intron 15.0%
!! TGATTACAAGTTATAATATA+TGG - chr5_4:61851252-61851271 Msa0862230:intron 15.0%
!! AAAGTTATATCTTGTATTAA+TGG - chr5_4:61849867-61849886 Msa0862230:intron 15.0%
!!! AATTATGATCATTTTGAAAA+AGG + chr5_4:61850334-61850353 None:intergenic 15.0%
!!! TTTTTCAAAATGATCATAAT+TGG - chr5_4:61850333-61850352 Msa0862230:CDS 15.0%
!! TGTAATTATTAACTTTACAT+CGG - chr5_4:61850918-61850937 Msa0862230:intron 15.0%
!! TGATTACAAGTTATAATATA+TGG - chr5_4:61851252-61851271 Msa0862230:intron 15.0%
!! TGGTGATATTTATATAACTT+TGG - chr5_4:61849887-61849906 Msa0862230:intron 20.0%
!! AATATGGAAATTCTGAATTA+GGG + chr5_4:61850025-61850044 None:intergenic 20.0%
!!! TTTTTATTGTCTGATTAAGA+AGG + chr5_4:61850360-61850379 None:intergenic 20.0%
!! ATCAAAAATAGGATAACAAT+TGG + chr5_4:61850491-61850510 None:intergenic 20.0%
!! AAAATACCGAAATTGAAATT+TGG + chr5_4:61850790-61850809 None:intergenic 20.0%
!!! AATATATGGTTAGCTAAATA+TGG - chr5_4:61851266-61851285 Msa0862230:intron 20.0%
!! AGAAAGTAAATATGTTATCA+TGG - chr5_4:61851371-61851390 Msa0862230:intron 20.0%
!! TGGTGATATTTATATAACTT+TGG - chr5_4:61849887-61849906 Msa0862230:intron 20.0%
!! AATATGGAAATTCTGAATTA+GGG + chr5_4:61850025-61850044 None:intergenic 20.0%
!!! TTTTTATTGTCTGATTAAGA+AGG + chr5_4:61850360-61850379 None:intergenic 20.0%
!! ATCAAAAATAGGATAACAAT+TGG + chr5_4:61850491-61850510 None:intergenic 20.0%
!! AAAATACCGAAATTGAAATT+TGG + chr5_4:61850790-61850809 None:intergenic 20.0%
!!! AATATATGGTTAGCTAAATA+TGG - chr5_4:61851266-61851285 Msa0862230:intron 20.0%
!! AGAAAGTAAATATGTTATCA+TGG - chr5_4:61851371-61851390 Msa0862230:intron 20.0%
! ATGATAGATTAGATTACCAT+AGG + chr5_4:61849782-61849801 None:intergenic 25.0%
! GAATATGGAAATTCTGAATT+AGG + chr5_4:61850026-61850045 None:intergenic 25.0%
! GAAACAAGAAACAAAATTAG+AGG + chr5_4:61850102-61850121 None:intergenic 25.0%
! CAAAAACATATATTGCTTGA+TGG + chr5_4:61850167-61850186 None:intergenic 25.0%
!!! TTTTCTGAAATGGATCAAAT+TGG + chr5_4:61850420-61850439 None:intergenic 25.0%
! TAATTATCCTATTAGAAACC+AGG - chr5_4:61850457-61850476 Msa0862230:CDS 25.0%
! AATTATCCTATTAGAAACCA+GGG - chr5_4:61850458-61850477 Msa0862230:CDS 25.0%
! AATAGGATAACAATTGGTAT+TGG + chr5_4:61850485-61850504 None:intergenic 25.0%
! GAAACAGATTCATCAAAAAT+AGG + chr5_4:61850502-61850521 None:intergenic 25.0%
! TGATTGATGAACAAACAATT+TGG + chr5_4:61850524-61850543 None:intergenic 25.0%
! ATACATAAGAGCAATGAATT+TGG + chr5_4:61850887-61850906 None:intergenic 25.0%
! TTGCAATTTATGGTACTATT+AGG - chr5_4:61851632-61851651 Msa0862230:intron 25.0%
!! TATGAAGAAAATGAAGCATT+TGG + chr5_4:61851762-61851781 None:intergenic 25.0%
!! ATTTTCTTCATATCACAAGA+GGG - chr5_4:61851770-61851789 Msa0862230:CDS 25.0%
! ATGATAGATTAGATTACCAT+AGG + chr5_4:61849782-61849801 None:intergenic 25.0%
! GAATATGGAAATTCTGAATT+AGG + chr5_4:61850026-61850045 None:intergenic 25.0%
! GAAACAAGAAACAAAATTAG+AGG + chr5_4:61850102-61850121 None:intergenic 25.0%
! CAAAAACATATATTGCTTGA+TGG + chr5_4:61850167-61850186 None:intergenic 25.0%
!!! TTTTCTGAAATGGATCAAAT+TGG + chr5_4:61850420-61850439 None:intergenic 25.0%
! TAATTATCCTATTAGAAACC+AGG - chr5_4:61850457-61850476 Msa0862230:CDS 25.0%
! AATTATCCTATTAGAAACCA+GGG - chr5_4:61850458-61850477 Msa0862230:CDS 25.0%
! AATAGGATAACAATTGGTAT+TGG + chr5_4:61850485-61850504 None:intergenic 25.0%
! GAAACAGATTCATCAAAAAT+AGG + chr5_4:61850502-61850521 None:intergenic 25.0%
! TGATTGATGAACAAACAATT+TGG + chr5_4:61850524-61850543 None:intergenic 25.0%
! ATACATAAGAGCAATGAATT+TGG + chr5_4:61850887-61850906 None:intergenic 25.0%
! TTGCAATTTATGGTACTATT+AGG - chr5_4:61851632-61851651 Msa0862230:intron 25.0%
!! TATGAAGAAAATGAAGCATT+TGG + chr5_4:61851762-61851781 None:intergenic 25.0%
!! ATTTTCTTCATATCACAAGA+GGG - chr5_4:61851770-61851789 Msa0862230:CDS 25.0%
CAAAGACTTCACATAGTAAA+TGG + chr5_4:61849649-61849668 None:intergenic 30.0%
AATTCCCAATCTTGAACTTA+GGG + chr5_4:61849984-61850003 None:intergenic 30.0%
AAATTCCCAATCTTGAACTT+AGG + chr5_4:61849985-61850004 None:intergenic 30.0%
ATAATAGCAAGTGCAGAATA+TGG + chr5_4:61850041-61850060 None:intergenic 30.0%
! TTTGTGCATGTTTGAAATCA+CGG - chr5_4:61850183-61850202 Msa0862230:intron 30.0%
! TTTTTGATGCTTCAAAGTGT+TGG - chr5_4:61850231-61850250 Msa0862230:intron 30.0%
!! TAATTATTGCTTTTGTTCCC+TGG + chr5_4:61850443-61850462 None:intergenic 30.0%
GTATTCATCAATAAGAACAG+TGG + chr5_4:61850686-61850705 None:intergenic 30.0%
GATGGTCCAAATTTCAATTT+CGG - chr5_4:61850781-61850800 Msa0862230:intron 30.0%
ACTGCTCGATATTGATAAAA+TGG - chr5_4:61850812-61850831 Msa0862230:intron 30.0%
AGTTGGAATATGCAATTTCA+TGG + chr5_4:61850855-61850874 None:intergenic 30.0%
! ATTTAGTACGACGAATTTTC+AGG - chr5_4:61850944-61850963 Msa0862230:intron 30.0%
! TTTAGTACGACGAATTTTCA+GGG - chr5_4:61850945-61850964 Msa0862230:intron 30.0%
!!! TATTTAGCCACATTGGTTTT+AGG + chr5_4:61850993-61851012 None:intergenic 30.0%
!! AGAATACACCATTCTGAAAT+TGG - chr5_4:61851200-61851219 Msa0862230:intron 30.0%
CCTGTAAAAGGGAAAAAAAA+GGG + chr5_4:61851315-61851334 None:intergenic 30.0%
TCCTGTAAAAGGGAAAAAAA+AGG + chr5_4:61851316-61851335 None:intergenic 30.0%
! CATTTTCTTCATATCACAAG+AGG - chr5_4:61851769-61851788 Msa0862230:CDS 30.0%
CAAAGACTTCACATAGTAAA+TGG + chr5_4:61849649-61849668 None:intergenic 30.0%
AATTCCCAATCTTGAACTTA+GGG + chr5_4:61849984-61850003 None:intergenic 30.0%
AAATTCCCAATCTTGAACTT+AGG + chr5_4:61849985-61850004 None:intergenic 30.0%
ATAATAGCAAGTGCAGAATA+TGG + chr5_4:61850041-61850060 None:intergenic 30.0%
! TTTGTGCATGTTTGAAATCA+CGG - chr5_4:61850183-61850202 Msa0862230:intron 30.0%
! TTTTTGATGCTTCAAAGTGT+TGG - chr5_4:61850231-61850250 Msa0862230:intron 30.0%
!! TAATTATTGCTTTTGTTCCC+TGG + chr5_4:61850443-61850462 None:intergenic 30.0%
GTATTCATCAATAAGAACAG+TGG + chr5_4:61850686-61850705 None:intergenic 30.0%
GATGGTCCAAATTTCAATTT+CGG - chr5_4:61850781-61850800 Msa0862230:intron 30.0%
ACTGCTCGATATTGATAAAA+TGG - chr5_4:61850812-61850831 Msa0862230:intron 30.0%
AGTTGGAATATGCAATTTCA+TGG + chr5_4:61850855-61850874 None:intergenic 30.0%
! ATTTAGTACGACGAATTTTC+AGG - chr5_4:61850944-61850963 Msa0862230:intron 30.0%
! TTTAGTACGACGAATTTTCA+GGG - chr5_4:61850945-61850964 Msa0862230:intron 30.0%
!!! TATTTAGCCACATTGGTTTT+AGG + chr5_4:61850993-61851012 None:intergenic 30.0%
!! AGAATACACCATTCTGAAAT+TGG - chr5_4:61851200-61851219 Msa0862230:intron 30.0%
CCTGTAAAAGGGAAAAAAAA+GGG + chr5_4:61851315-61851334 None:intergenic 30.0%
TCCTGTAAAAGGGAAAAAAA+AGG + chr5_4:61851316-61851335 None:intergenic 30.0%
! CATTTTCTTCATATCACAAG+AGG - chr5_4:61851769-61851788 Msa0862230:CDS 30.0%
AATCACCCTAAGTTCAAGAT+TGG - chr5_4:61849976-61849995 Msa0862230:intron 35.0%
ATCACCCTAAGTTCAAGATT+GGG - chr5_4:61849977-61849996 Msa0862230:intron 35.0%
AACCAGAGATCAAAAGAGTA+TGG - chr5_4:61850387-61850406 Msa0862230:CDS 35.0%
TTGATCCATTTCAGAAAACC+AGG - chr5_4:61850422-61850441 Msa0862230:CDS 35.0%
TGATCCATTTCAGAAAACCA+GGG - chr5_4:61850423-61850442 Msa0862230:CDS 35.0%
!! CTTCCTTTGGTCATTTTATG+AGG - chr5_4:61850636-61850655 Msa0862230:intron 35.0%
ATACTCCTCAATATTGCTCT+TGG - chr5_4:61850702-61850721 Msa0862230:intron 35.0%
CATATCCAAGAGCAATATTG+AGG + chr5_4:61850710-61850729 None:intergenic 35.0%
CTCAATATTGCTCTTGGATA+TGG - chr5_4:61850708-61850727 Msa0862230:intron 35.0%
ACCAATGTGGCTAAATATGA+AGG - chr5_4:61850996-61851015 Msa0862230:intron 35.0%
ACCTTCATATTTAGCCACAT+TGG + chr5_4:61851000-61851019 None:intergenic 35.0%
!! CTTGCATTTTAGTCATTGGT+TGG + chr5_4:61851094-61851113 None:intergenic 35.0%
CAACCAATGACTAAAATGCA+AGG - chr5_4:61851092-61851111 Msa0862230:intron 35.0%
!! TAGCCTTGCATTTTAGTCAT+TGG + chr5_4:61851098-61851117 None:intergenic 35.0%
CCTTGTATATTCTGTTTGCT+TGG + chr5_4:61851158-61851177 None:intergenic 35.0%
CCAAGCAAACAGAATATACA+AGG - chr5_4:61851155-61851174 Msa0862230:intron 35.0%
GCTAATCACCAATTTCAGAA+TGG + chr5_4:61851211-61851230 None:intergenic 35.0%
!!! CCCTTTTTTTTCCCTTTTAC+AGG - chr5_4:61851312-61851331 Msa0862230:intron 35.0%
ACCACTCAATTCCTGTAAAA+GGG + chr5_4:61851326-61851345 None:intergenic 35.0%
! ACATTGACACTTTTGATGCA+AGG - chr5_4:61851472-61851491 Msa0862230:intron 35.0%
TTGAATGTAATCGCATGTGT+CGG + chr5_4:61851533-61851552 None:intergenic 35.0%
ATGTCGCTCTTTGCAATTTA+TGG - chr5_4:61851622-61851641 Msa0862230:intron 35.0%
TTTGACAGATTGTCGATCAA+AGG - chr5_4:61851699-61851718 Msa0862230:intron 35.0%
AATCACCCTAAGTTCAAGAT+TGG - chr5_4:61849976-61849995 Msa0862230:intron 35.0%
ATCACCCTAAGTTCAAGATT+GGG - chr5_4:61849977-61849996 Msa0862230:intron 35.0%
AACCAGAGATCAAAAGAGTA+TGG - chr5_4:61850387-61850406 Msa0862230:CDS 35.0%
TTGATCCATTTCAGAAAACC+AGG - chr5_4:61850422-61850441 Msa0862230:CDS 35.0%
TGATCCATTTCAGAAAACCA+GGG - chr5_4:61850423-61850442 Msa0862230:CDS 35.0%
!! CTTCCTTTGGTCATTTTATG+AGG - chr5_4:61850636-61850655 Msa0862230:intron 35.0%
ATACTCCTCAATATTGCTCT+TGG - chr5_4:61850702-61850721 Msa0862230:intron 35.0%
CATATCCAAGAGCAATATTG+AGG + chr5_4:61850710-61850729 None:intergenic 35.0%
CTCAATATTGCTCTTGGATA+TGG - chr5_4:61850708-61850727 Msa0862230:intron 35.0%
ACCAATGTGGCTAAATATGA+AGG - chr5_4:61850996-61851015 Msa0862230:intron 35.0%
ACCTTCATATTTAGCCACAT+TGG + chr5_4:61851000-61851019 None:intergenic 35.0%
!! CTTGCATTTTAGTCATTGGT+TGG + chr5_4:61851094-61851113 None:intergenic 35.0%
CAACCAATGACTAAAATGCA+AGG - chr5_4:61851092-61851111 Msa0862230:intron 35.0%
!! TAGCCTTGCATTTTAGTCAT+TGG + chr5_4:61851098-61851117 None:intergenic 35.0%
CCTTGTATATTCTGTTTGCT+TGG + chr5_4:61851158-61851177 None:intergenic 35.0%
CCAAGCAAACAGAATATACA+AGG - chr5_4:61851155-61851174 Msa0862230:intron 35.0%
GCTAATCACCAATTTCAGAA+TGG + chr5_4:61851211-61851230 None:intergenic 35.0%
!!! CCCTTTTTTTTCCCTTTTAC+AGG - chr5_4:61851312-61851331 Msa0862230:intron 35.0%
ACCACTCAATTCCTGTAAAA+GGG + chr5_4:61851326-61851345 None:intergenic 35.0%
! ACATTGACACTTTTGATGCA+AGG - chr5_4:61851472-61851491 Msa0862230:intron 35.0%
TTGAATGTAATCGCATGTGT+CGG + chr5_4:61851533-61851552 None:intergenic 35.0%
ATGTCGCTCTTTGCAATTTA+TGG - chr5_4:61851622-61851641 Msa0862230:intron 35.0%
TTTGACAGATTGTCGATCAA+AGG - chr5_4:61851699-61851718 Msa0862230:intron 35.0%
!! CCATTTCTAGCTAGTTAACG+TGG + chr5_4:61849676-61849695 None:intergenic 40.0%
CCACGTTAACTAGCTAGAAA+TGG - chr5_4:61849673-61849692 Msa0862230:CDS 40.0%
GCTAGAAATGGAGAATGAGT+TGG - chr5_4:61849685-61849704 Msa0862230:CDS 40.0%
GGTAGATGAAATCTCATCAC+TGG + chr5_4:61849750-61849769 None:intergenic 40.0%
GATTACCATAGGCAGAAGAT+GGG + chr5_4:61849771-61849790 None:intergenic 40.0%
AGATTACCATAGGCAGAAGA+TGG + chr5_4:61849772-61849791 None:intergenic 40.0%
! TGCATGTTTGAAATCACGGT+GGG - chr5_4:61850187-61850206 Msa0862230:intron 40.0%
!! CATGTTTGAATTGGTGGTGT+TGG + chr5_4:61850277-61850296 None:intergenic 40.0%
ACAGTGCATGTTTGAATTGG+TGG + chr5_4:61850283-61850302 None:intergenic 40.0%
GAGACAGTGCATGTTTGAAT+TGG + chr5_4:61850286-61850305 None:intergenic 40.0%
! CTCCATACTCTTTTGATCTC+TGG + chr5_4:61850392-61850411 None:intergenic 40.0%
!! TGTTCCCTGGTTTTCTGAAA+TGG + chr5_4:61850430-61850449 None:intergenic 40.0%
ATTGGTCCCTGGTTTCTAAT+AGG + chr5_4:61850467-61850486 None:intergenic 40.0%
!! TAACAATTGGTATTGGTCCC+TGG + chr5_4:61850478-61850497 None:intergenic 40.0%
CTACCACTGCAATTCTGATA+GGG + chr5_4:61850557-61850576 None:intergenic 40.0%
ACTACCACTGCAATTCTGAT+AGG + chr5_4:61850558-61850577 None:intergenic 40.0%
GCTTAGGAGATGTGACAATA+AGG - chr5_4:61850589-61850608 Msa0862230:intron 40.0%
CTGCCTCATAAAATGACCAA+AGG + chr5_4:61850642-61850661 None:intergenic 40.0%
GAATTTGGATTGCATGCAGT+TGG + chr5_4:61850872-61850891 None:intergenic 40.0%
!!! ATTGGTTTTAGGAGCAACAG+AGG + chr5_4:61850982-61851001 None:intergenic 40.0%
TGTTGCTCCTAAAACCAATG+TGG - chr5_4:61850983-61851002 Msa0862230:intron 40.0%
CATGGCTCTCTTGCATAATT+AGG + chr5_4:61851023-61851042 None:intergenic 40.0%
! ACGATTGATTCTTTCCTTGC+AGG + chr5_4:61851056-61851075 None:intergenic 40.0%
! TTGAGCCACCTTCATTTTCT+AGG - chr5_4:61851132-61851151 Msa0862230:intron 40.0%
TTGCTTGGCCTAGAAAATGA+AGG + chr5_4:61851143-61851162 None:intergenic 40.0%
! TCCCTTTTACAGGAATTGAG+TGG - chr5_4:61851322-61851341 Msa0862230:intron 40.0%
GACCACTCAATTCCTGTAAA+AGG + chr5_4:61851327-61851346 None:intergenic 40.0%
GATTCTGCAACATCCATTCT+TGG + chr5_4:61851351-61851370 None:intergenic 40.0%
GTTATCATGGTAGAAGTTCC+TGG - chr5_4:61851384-61851403 Msa0862230:intron 40.0%
GATACTGTATGGACCATATG+AGG - chr5_4:61851794-61851813 Msa0862230:exon 40.0%
ATGGACCATATGAGGTTGTT+TGG - chr5_4:61851802-61851821 Msa0862230:five_prime_UTR 40.0%
!! CCATTTCTAGCTAGTTAACG+TGG + chr5_4:61849676-61849695 None:intergenic 40.0%
CCACGTTAACTAGCTAGAAA+TGG - chr5_4:61849673-61849692 Msa0862230:CDS 40.0%
GCTAGAAATGGAGAATGAGT+TGG - chr5_4:61849685-61849704 Msa0862230:CDS 40.0%
GGTAGATGAAATCTCATCAC+TGG + chr5_4:61849750-61849769 None:intergenic 40.0%
GATTACCATAGGCAGAAGAT+GGG + chr5_4:61849771-61849790 None:intergenic 40.0%
AGATTACCATAGGCAGAAGA+TGG + chr5_4:61849772-61849791 None:intergenic 40.0%
! TGCATGTTTGAAATCACGGT+GGG - chr5_4:61850187-61850206 Msa0862230:intron 40.0%
!! CATGTTTGAATTGGTGGTGT+TGG + chr5_4:61850277-61850296 None:intergenic 40.0%
ACAGTGCATGTTTGAATTGG+TGG + chr5_4:61850283-61850302 None:intergenic 40.0%
GAGACAGTGCATGTTTGAAT+TGG + chr5_4:61850286-61850305 None:intergenic 40.0%
! CTCCATACTCTTTTGATCTC+TGG + chr5_4:61850392-61850411 None:intergenic 40.0%
!! TGTTCCCTGGTTTTCTGAAA+TGG + chr5_4:61850430-61850449 None:intergenic 40.0%
ATTGGTCCCTGGTTTCTAAT+AGG + chr5_4:61850467-61850486 None:intergenic 40.0%
!! TAACAATTGGTATTGGTCCC+TGG + chr5_4:61850478-61850497 None:intergenic 40.0%
CTACCACTGCAATTCTGATA+GGG + chr5_4:61850557-61850576 None:intergenic 40.0%
ACTACCACTGCAATTCTGAT+AGG + chr5_4:61850558-61850577 None:intergenic 40.0%
GCTTAGGAGATGTGACAATA+AGG - chr5_4:61850589-61850608 Msa0862230:intron 40.0%
CTGCCTCATAAAATGACCAA+AGG + chr5_4:61850642-61850661 None:intergenic 40.0%
GAATTTGGATTGCATGCAGT+TGG + chr5_4:61850872-61850891 None:intergenic 40.0%
!!! ATTGGTTTTAGGAGCAACAG+AGG + chr5_4:61850982-61851001 None:intergenic 40.0%
TGTTGCTCCTAAAACCAATG+TGG - chr5_4:61850983-61851002 Msa0862230:intron 40.0%
CATGGCTCTCTTGCATAATT+AGG + chr5_4:61851023-61851042 None:intergenic 40.0%
! ACGATTGATTCTTTCCTTGC+AGG + chr5_4:61851056-61851075 None:intergenic 40.0%
! TTGAGCCACCTTCATTTTCT+AGG - chr5_4:61851132-61851151 Msa0862230:intron 40.0%
TTGCTTGGCCTAGAAAATGA+AGG + chr5_4:61851143-61851162 None:intergenic 40.0%
! TCCCTTTTACAGGAATTGAG+TGG - chr5_4:61851322-61851341 Msa0862230:intron 40.0%
GACCACTCAATTCCTGTAAA+AGG + chr5_4:61851327-61851346 None:intergenic 40.0%
GATTCTGCAACATCCATTCT+TGG + chr5_4:61851351-61851370 None:intergenic 40.0%
GTTATCATGGTAGAAGTTCC+TGG - chr5_4:61851384-61851403 Msa0862230:intron 40.0%
GATACTGTATGGACCATATG+AGG - chr5_4:61851794-61851813 Msa0862230:exon 40.0%
ATGGACCATATGAGGTTGTT+TGG - chr5_4:61851802-61851821 Msa0862230:five_prime_UTR 40.0%
CTCATCACTGGAAGCAAAGT+GGG + chr5_4:61849738-61849757 None:intergenic 45.0%
TCTCATCACTGGAAGCAAAG+TGG + chr5_4:61849739-61849758 None:intergenic 45.0%
ATCTACCCATCTTCTGCCTA+TGG - chr5_4:61849763-61849782 Msa0862230:intron 45.0%
! GTGCATGTTTGAAATCACGG+TGG - chr5_4:61850186-61850205 Msa0862230:intron 45.0%
! GTTTGAAATCACGGTGGGTT+TGG - chr5_4:61850192-61850211 Msa0862230:intron 45.0%
TCTCCCTATCAGAATTGCAG+TGG - chr5_4:61850551-61850570 Msa0862230:intron 45.0%
GTAGTCTGAACTCTGTGCTT+AGG - chr5_4:61850573-61850592 Msa0862230:intron 45.0%
TCATGGAGTCAGAACATCAG+TGG + chr5_4:61850838-61850857 None:intergenic 45.0%
!! AGTACGACGAATTTTCAGGG+TGG - chr5_4:61850948-61850967 Msa0862230:intron 45.0%
CTTGCAGGTCTTGCAAAACA+TGG + chr5_4:61851041-61851060 None:intergenic 45.0%
! CATGTTTTGCAAGACCTGCA+AGG - chr5_4:61851039-61851058 Msa0862230:intron 45.0%
CTTGGCCTAGAAAATGAAGG+TGG + chr5_4:61851140-61851159 None:intergenic 45.0%
AATTGAGTGGTCGCCAAGAA+TGG - chr5_4:61851335-61851354 Msa0862230:intron 45.0%
! TCTTGTGTCGATGTTGTGTC+TGG - chr5_4:61851577-61851596 Msa0862230:intron 45.0%
! TTGTGTCTGGAGTTGGTCTA+TGG - chr5_4:61851590-61851609 Msa0862230:intron 45.0%
! TGTGTCTGGAGTTGGTCTAT+GGG - chr5_4:61851591-61851610 Msa0862230:intron 45.0%
! GTAGACGCTCTACTAGTTCT+TGG - chr5_4:61851721-61851740 Msa0862230:CDS 45.0%
! ACTAGTTCTTGGAGAGAAGC+AGG - chr5_4:61851732-61851751 Msa0862230:CDS 45.0%
CACAAGAGGGAGATACTGTA+TGG - chr5_4:61851783-61851802 Msa0862230:exon 45.0%
AGTGGCCAAACAACCTCATA+TGG + chr5_4:61851810-61851829 None:intergenic 45.0%
CTCATCACTGGAAGCAAAGT+GGG + chr5_4:61849738-61849757 None:intergenic 45.0%
TCTCATCACTGGAAGCAAAG+TGG + chr5_4:61849739-61849758 None:intergenic 45.0%
ATCTACCCATCTTCTGCCTA+TGG - chr5_4:61849763-61849782 Msa0862230:intron 45.0%
! GTGCATGTTTGAAATCACGG+TGG - chr5_4:61850186-61850205 Msa0862230:intron 45.0%
! GTTTGAAATCACGGTGGGTT+TGG - chr5_4:61850192-61850211 Msa0862230:intron 45.0%
TCTCCCTATCAGAATTGCAG+TGG - chr5_4:61850551-61850570 Msa0862230:intron 45.0%
GTAGTCTGAACTCTGTGCTT+AGG - chr5_4:61850573-61850592 Msa0862230:intron 45.0%
TCATGGAGTCAGAACATCAG+TGG + chr5_4:61850838-61850857 None:intergenic 45.0%
!! AGTACGACGAATTTTCAGGG+TGG - chr5_4:61850948-61850967 Msa0862230:intron 45.0%
CTTGCAGGTCTTGCAAAACA+TGG + chr5_4:61851041-61851060 None:intergenic 45.0%
! CATGTTTTGCAAGACCTGCA+AGG - chr5_4:61851039-61851058 Msa0862230:intron 45.0%
CTTGGCCTAGAAAATGAAGG+TGG + chr5_4:61851140-61851159 None:intergenic 45.0%
AATTGAGTGGTCGCCAAGAA+TGG - chr5_4:61851335-61851354 Msa0862230:intron 45.0%
! TCTTGTGTCGATGTTGTGTC+TGG - chr5_4:61851577-61851596 Msa0862230:intron 45.0%
! TTGTGTCTGGAGTTGGTCTA+TGG - chr5_4:61851590-61851609 Msa0862230:intron 45.0%
! TGTGTCTGGAGTTGGTCTAT+GGG - chr5_4:61851591-61851610 Msa0862230:intron 45.0%
! GTAGACGCTCTACTAGTTCT+TGG - chr5_4:61851721-61851740 Msa0862230:CDS 45.0%
! ACTAGTTCTTGGAGAGAAGC+AGG - chr5_4:61851732-61851751 Msa0862230:CDS 45.0%
CACAAGAGGGAGATACTGTA+TGG - chr5_4:61851783-61851802 Msa0862230:exon 45.0%
AGTGGCCAAACAACCTCATA+TGG + chr5_4:61851810-61851829 None:intergenic 45.0%
!! TAATAATATTCAATAAAATA+AGG - chr5_4:61850123-61850142 Msa0862230:CDS 5.0%
!! TAATAATATTCAATAAAATA+AGG - chr5_4:61850123-61850142 Msa0862230:CDS 5.0%
! ACGGTGGGTTTGGCAAAATC+AGG - chr5_4:61850202-61850221 Msa0862230:intron 50.0%
! CGGTGGGTTTGGCAAAATCA+GGG - chr5_4:61850203-61850222 Msa0862230:intron 50.0%
CGACAAGCATCTGCTTCCTT+TGG - chr5_4:61850623-61850642 Msa0862230:intron 50.0%
CATGCAGTCAGGAGCAAGAT+CGG - chr5_4:61850759-61850778 Msa0862230:intron 50.0%
! AGAAGTTCCTGGTGTCAGTG+TGG - chr5_4:61851395-61851414 Msa0862230:intron 50.0%
! GAAGTTCCTGGTGTCAGTGT+GGG - chr5_4:61851396-61851415 Msa0862230:intron 50.0%
CAGTGTGGGTGACATAAGAG+TGG - chr5_4:61851410-61851429 Msa0862230:intron 50.0%
TGTGGGTGACATAAGAGTGG+AGG - chr5_4:61851413-61851432 Msa0862230:intron 50.0%
TGCAAGGCTTGTCTAGTGTC+TGG - chr5_4:61851488-61851507 Msa0862230:intron 50.0%
TTGTCTAGTGTCTGGCACGT+GGG - chr5_4:61851496-61851515 Msa0862230:intron 50.0%
! GTAATCGCATGTGTCGGTGT+CGG + chr5_4:61851527-61851546 None:intergenic 50.0%
! GTCGATGTTGTGTCTGGAGT+TGG - chr5_4:61851583-61851602 Msa0862230:intron 50.0%
TTGTTCACACGAGGAGGAAG+TGG + chr5_4:61851828-61851847 None:intergenic 50.0%
ACTTCCTCCTCGTGTGAACA+AGG - chr5_4:61851827-61851846 Msa0862230:five_prime_UTR 50.0%
! ACGGTGGGTTTGGCAAAATC+AGG - chr5_4:61850202-61850221 Msa0862230:intron 50.0%
! CGGTGGGTTTGGCAAAATCA+GGG - chr5_4:61850203-61850222 Msa0862230:intron 50.0%
CGACAAGCATCTGCTTCCTT+TGG - chr5_4:61850623-61850642 Msa0862230:intron 50.0%
CATGCAGTCAGGAGCAAGAT+CGG - chr5_4:61850759-61850778 Msa0862230:intron 50.0%
! AGAAGTTCCTGGTGTCAGTG+TGG - chr5_4:61851395-61851414 Msa0862230:intron 50.0%
! GAAGTTCCTGGTGTCAGTGT+GGG - chr5_4:61851396-61851415 Msa0862230:intron 50.0%
CAGTGTGGGTGACATAAGAG+TGG - chr5_4:61851410-61851429 Msa0862230:intron 50.0%
TGTGGGTGACATAAGAGTGG+AGG - chr5_4:61851413-61851432 Msa0862230:intron 50.0%
TGCAAGGCTTGTCTAGTGTC+TGG - chr5_4:61851488-61851507 Msa0862230:intron 50.0%
TTGTCTAGTGTCTGGCACGT+GGG - chr5_4:61851496-61851515 Msa0862230:intron 50.0%
! GTAATCGCATGTGTCGGTGT+CGG + chr5_4:61851527-61851546 None:intergenic 50.0%
! GTCGATGTTGTGTCTGGAGT+TGG - chr5_4:61851583-61851602 Msa0862230:intron 50.0%
TTGTTCACACGAGGAGGAAG+TGG + chr5_4:61851828-61851847 None:intergenic 50.0%
GAGGCAGACATCAGCTGAAG+AGG - chr5_4:61850655-61850674 Msa0862230:intron 55.0%
CAGTCAGGAGCAAGATCGGA+TGG - chr5_4:61850763-61850782 Msa0862230:intron 55.0%
ATGTCACCCACACTGACACC+AGG + chr5_4:61851405-61851424 None:intergenic 55.0%
CTTGTCTAGTGTCTGGCACG+TGG - chr5_4:61851495-61851514 Msa0862230:intron 55.0%
TGTCTAGTGTCTGGCACGTG+GGG - chr5_4:61851497-61851516 Msa0862230:intron 55.0%
GAGGCAGACATCAGCTGAAG+AGG - chr5_4:61850655-61850674 Msa0862230:intron 55.0%
CAGTCAGGAGCAAGATCGGA+TGG - chr5_4:61850763-61850782 Msa0862230:intron 55.0%
ATGTCACCCACACTGACACC+AGG + chr5_4:61851405-61851424 None:intergenic 55.0%
CTTGTCTAGTGTCTGGCACG+TGG - chr5_4:61851495-61851514 Msa0862230:intron 55.0%
TGTCTAGTGTCTGGCACGTG+GGG - chr5_4:61851497-61851516 Msa0862230:intron 55.0%
TCTCGCGCAGTCATGCAGTC+AGG - chr5_4:61850748-61850767 Msa0862230:intron 60.0%
GTCTAGTGTCTGGCACGTGG+GGG - chr5_4:61851498-61851517 Msa0862230:intron 60.0%
TCTCGCGCAGTCATGCAGTC+AGG - chr5_4:61850748-61850767 Msa0862230:intron 60.0%
GTCTAGTGTCTGGCACGTGG+GGG - chr5_4:61851498-61851517 Msa0862230:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 61849637 61851849 61849637 ID=Msa0862230;Name=Msa0862230
chr5_4 mRNA 61849637 61851849 61849637 ID=Msa0862230-mRNA-1;Parent=Msa0862230;Name=Msa0862230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=55|0.5|0.6|1|1|1|5|6|203
chr5_4 exon 61849637 61849779 61849637 ID=Msa0862230-mRNA-1:exon:19221;Parent=Msa0862230-mRNA-1
chr5_4 exon 61850075 61850152 61850075 ID=Msa0862230-mRNA-1:exon:19220;Parent=Msa0862230-mRNA-1
chr5_4 exon 61850265 61850520 61850265 ID=Msa0862230-mRNA-1:exon:19219;Parent=Msa0862230-mRNA-1
chr5_4 exon 61850876 61850923 61850876 ID=Msa0862230-mRNA-1:exon:19218;Parent=Msa0862230-mRNA-1
chr5_4 exon 61851702 61851849 61851702 ID=Msa0862230-mRNA-1:exon:19217;Parent=Msa0862230-mRNA-1
chr5_4 five_prime_UTR 61851795 61851849 61851795 ID=Msa0862230-mRNA-1:five_prime_utr;Parent=Msa0862230-mRNA-1
chr5_4 CDS 61851702 61851794 61851702 ID=Msa0862230-mRNA-1:cds;Parent=Msa0862230-mRNA-1
chr5_4 CDS 61850876 61850923 61850876 ID=Msa0862230-mRNA-1:cds;Parent=Msa0862230-mRNA-1
chr5_4 CDS 61850265 61850520 61850265 ID=Msa0862230-mRNA-1:cds;Parent=Msa0862230-mRNA-1
chr5_4 CDS 61850075 61850152 61850075 ID=Msa0862230-mRNA-1:cds;Parent=Msa0862230-mRNA-1
chr5_4 CDS 61849643 61849779 61849643 ID=Msa0862230-mRNA-1:cds;Parent=Msa0862230-mRNA-1
chr5_4 three_prime_UTR 61849637 61849642 61849637 ID=Msa0862230-mRNA-1:three_prime_utr;Parent=Msa0862230-mRNA-1
Gene Sequence

>Msa0862230

ATGGAGAATGAGTTGGTGAAACGCAGAATTGATACTATTGCAGCCCACTTTGCTTCCAGTGATGAGATTTCATCTACCCATCTTCTGCCTATGAATTGCAGTGGTAGTCTGAACTCTGTGCTTAGGAGATGTGACAATAAGGGTGGCTTAACATCCTCTGTTGCTCCTAAAACCAATGTGGCTAAATATGAAGGTCCTAATTATGCAAGAGAGCCATGTTTTGCAAGACCTGCAAGGAAAGAATCAATCGTTTCAAATTCAGTTGTCCAACCAATGACTAAAATGCAAGGCTATAATTTTGATTCACTTGAGCCACCTTCATTTTCTAGGCCAAGCAAACAGAATATACAAGGAGAACAGCTAAATAATGAGAAAAGAATACACCATTCTGAAATTGGAATTGAGTGGTCGCCAAGAATGGATGTTGCAGAATCAGAAAGTAAATATGTTATCATGGTAGAAGTTCCTGGTGTCAATTGTCGATCAAAGGTAGACGCTCTACTAGTTCTTGGAGAGAAGCAGGTTGTCCAAATGCTTCATTTTCTTCATATCACAAGAGGGAGATACTGTATGGACCATATGAGGTTGTTTGGCCACTTCCTCCTCGTGTGA

Protein sequence

>Msa0862230

MENELVKRRIDTIAAHFASSDEISSTHLLPMNCSGSLNSVLRRCDNKGGLTSSVAPKTNVAKYEGPNYAREPCFARPARKESIVSNSVVQPMTKMQGYNFDSLEPPSFSRPSKQNIQGEQLNNEKRIHHSEIGIEWSPRMDVAESESKYVIMVEVPGVNCRSKVDALLVLGEKQVVQMLHFLHITRGRYCMDHMRLFGHFLLV*