AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0823310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0823310 MtrunA17_Chr5g0443541 78.378 259 17 2 1 220 1 259 3.89e-142 397
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0823310 AT1G06460.1 34.074 270 111 9 16 220 18 285 7.30e-35 125

Find 68 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCGAAAATTTATTTAAA+TGG 0.168326 5_3:-61987190 None:intergenic
GAAACAAACATGAAACTTAA+AGG 0.204448 5_3:-61987228 None:intergenic
AATCTATCTTTGTCTCTTTC+CGG 0.204653 5_3:+61983874 Msa0823310:five_prime_UTR
CTGAAACCTTAGAAACTTAA+AGG 0.219994 5_3:-61987259 None:intergenic
ATTACTGAGCTTCAAACTTT+AGG 0.239599 5_3:-61986921 None:intergenic
AAAGGATCCGGGGATGTATT+TGG 0.240362 5_3:-61987210 None:intergenic
AGAATACACCATTCTGAAAT+TGG 0.251394 5_3:+61985566 Msa0823310:CDS
CATGGCTCTCTTGCATAATT+AGG 0.258582 5_3:-61985386 None:intergenic
GATTCTGCAACATCCATTCT+TGG 0.264287 5_3:-61985715 None:intergenic
ATAGATCCTTTAAGTTTCTA+AGG 0.271487 5_3:+61987253 Msa0823310:three_prime_UTR
CAAAGACTTCACATAGTAAA+TGG 0.272754 5_3:-61984016 None:intergenic
ACGATTGATTCTTTCCTTGC+AGG 0.285486 5_3:-61985419 None:intergenic
CGCAGAATGTGGCACATATA+TGG 0.293878 5_3:-61983989 None:intergenic
CCTTGTATATTCTGTTTGCT+TGG 0.343416 5_3:-61985521 None:intergenic
GTAGACGCTCTACTAGTTCT+TGG 0.370835 5_3:+61986088 Msa0823310:CDS
ATTTAAATGGTGTGAACAAA+CGG 0.398232 5_3:-61987177 None:intergenic
TATGAAGAAAATGAAGCATT+TGG 0.403591 5_3:-61986126 None:intergenic
TTTAAATGGTGTGAACAAAC+GGG 0.406303 5_3:-61987176 None:intergenic
GCTTAGGAGATGTGACAATA+AGG 0.409685 5_3:+61984955 Msa0823310:CDS
CCACGTTAACTAGCTAGAAA+TGG 0.426131 5_3:+61984043 Msa0823310:exon
AACATGAAACTTAAAGGATC+CGG 0.426207 5_3:-61987222 None:intergenic
ATCTATGTAAATAGTATGTC+CGG 0.429265 5_3:-61983893 None:intergenic
ATCTACCCATCTTCTGCCTA+TGG 0.436149 5_3:+61984133 Msa0823310:CDS
ATGGACCATATGAGGTTGTT+TGG 0.454708 5_3:+61986169 Msa0823310:CDS
AATTGAGTGGTCACCAAGAA+TGG 0.455876 5_3:+61985702 Msa0823310:CDS
CTTGCAGGTCTTGCAAAACA+TGG 0.457049 5_3:-61985404 None:intergenic
GTTATCATGGTAGAAGTTCC+TGG 0.470836 5_3:+61985751 Msa0823310:CDS
ACATACTATTTACATAGATT+AGG 0.474226 5_3:+61983897 Msa0823310:five_prime_UTR
AGTGGCCAAACAACCTCATA+TGG 0.481163 5_3:-61986174 None:intergenic
ACTAGTTCTTGGAGAGAAGC+AGG 0.485633 5_3:+61986099 Msa0823310:CDS
AGATTACCATAGGCAGAAGA+TGG 0.487818 5_3:-61984139 None:intergenic
AGAAAGTAAATATGTTATCA+TGG 0.491749 5_3:+61985738 Msa0823310:CDS
ACCAATGTGGCTAAATATGA+AGG 0.493398 5_3:+61985362 Msa0823310:CDS
GGTAGATGAAATCTCATCAA+TGG 0.494193 5_3:-61984117 None:intergenic
ATACTGTAATGAACATATGA+TGG 0.504498 5_3:+61987059 Msa0823310:three_prime_UTR
CACAAGAGGGAGATACTGTA+TGG 0.508140 5_3:+61986150 Msa0823310:CDS
GTAGTCTGAACTCTGTGCTT+AGG 0.510140 5_3:+61984939 Msa0823310:CDS
ACATGAAACTTAAAGGATCC+GGG 0.518627 5_3:-61987221 None:intergenic
CTCATCAATGGAAGCAAAGT+GGG 0.522175 5_3:-61984105 None:intergenic
TTGTTCACACGAGGAGGAAG+TGG 0.523682 5_3:-61986192 None:intergenic
GATACTGTATGGACCATATG+AGG 0.529593 5_3:+61986161 Msa0823310:CDS
ACCTTCATATTTAGCCACAT+TGG 0.536522 5_3:-61985363 None:intergenic
CCAAGCAAACAGAATATACA+AGG 0.537645 5_3:+61985521 Msa0823310:CDS
TTTGCCGATCATAGTAGAGT+TGG 0.548138 5_3:+61986961 Msa0823310:three_prime_UTR
ATACTATATATATACACGAT+TGG 0.564363 5_3:-61987038 None:intergenic
GCTAATCACCAATTTCAGAA+TGG 0.565371 5_3:-61985574 None:intergenic
GCTAGAAATGGAGAATGAGT+TGG 0.569649 5_3:+61984055 Msa0823310:exon
TTGCTTGGCCTAGAAAATGA+AGG 0.570216 5_3:-61985506 None:intergenic
ACTTCCTCCTCGTGTGAACA+AGG 0.571990 5_3:+61986194 Msa0823310:CDS
ATTGCCAACTCTACTATGAT+CGG 0.578353 5_3:-61986965 None:intergenic
CCATTTCTAGCTAGTTAACG+TGG 0.587217 5_3:-61984043 None:intergenic
ATGTCACCCACACTGACACC+AGG 0.596279 5_3:-61985769 None:intergenic
AGAATGTGGCACATATATGG+AGG 0.596518 5_3:-61983986 None:intergenic
GAATGTGGCACATATATGGA+GGG 0.604477 5_3:-61983985 None:intergenic
GATTACCATAGGCAGAAGAT+GGG 0.610033 5_3:-61984138 None:intergenic
TCTCATCAATGGAAGCAAAG+TGG 0.624749 5_3:-61984106 None:intergenic
TAAATGGATAACGCAGAATG+TGG 0.625298 5_3:-61984000 None:intergenic
CAACCAATGACTAAAATGCA+AGG 0.630284 5_3:+61985458 Msa0823310:CDS
CATGAAACTTAAAGGATCCG+GGG 0.632929 5_3:-61987220 None:intergenic
TTGTCCTTGTTCACACGAGG+AGG 0.635624 5_3:-61986198 None:intergenic
CTTGGCCTAGAAAATGAAGG+TGG 0.645955 5_3:-61985503 None:intergenic
TGAACAGAAAATGTCTACAC+AGG 0.650350 5_3:+61987113 Msa0823310:three_prime_UTR
AATGTGGCACATATATGGAG+GGG 0.651025 5_3:-61983984 None:intergenic
TTAAATGGTGTGAACAAACG+GGG 0.653710 5_3:-61987175 None:intergenic
TCTCCCTATCAGAATTGCAG+TGG 0.660004 5_3:+61984917 Msa0823310:intron
ACATTGTCCTTGTTCACACG+AGG 0.684915 5_3:-61986201 None:intergenic
TATTATAGTCTACATGACAA+CGG 0.700822 5_3:-61987152 None:intergenic
TGTTGCTCCTAAAACCAATG+TGG 0.717404 5_3:+61985349 Msa0823310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAAAATCGTAAGT+GGG - chr5_3:61983924-61983943 None:intergenic 15.0%
!! AATAAATAAAAAATCGTAAG+TGG - chr5_3:61983925-61983944 None:intergenic 15.0%
!!! ATTGGTAATATTTATAACTT+TGG + chr5_3:61984253-61984272 Msa0823310:intron 15.0%
!!! AATTATGATCATTTTGAAAA+AGG - chr5_3:61984700-61984719 None:intergenic 15.0%
!!! TTTTTCAAAATGATCATAAT+TGG + chr5_3:61984699-61984718 Msa0823310:intron 15.0%
!! TGTAATTATTAACTTTACAT+CGG + chr5_3:61985284-61985303 Msa0823310:intron 15.0%
!! TGATTACAAGTTATAATATA+TGG + chr5_3:61985618-61985637 Msa0823310:intron 15.0%
!! AAATGACTAAAAATTAATTG+AGG + chr5_3:61986531-61986550 Msa0823310:intron 15.0%
!!! ATTTTTATTAGAATTTGAGT+TGG + chr5_3:61986687-61986706 Msa0823310:intron 15.0%
!!! CATCTAATAAAATAATTTTG+AGG - chr5_3:61986724-61986743 None:intergenic 15.0%
!!! CAAAATTATTTTATTAGATG+AGG + chr5_3:61986724-61986743 Msa0823310:intron 15.0%
!!! ACACCATTTAAATAAATTTT+CGG + chr5_3:61987187-61987206 Msa0823310:three_prime_UTR 15.0%
!! ACATACTATTTACATAGATT+AGG + chr5_3:61983897-61983916 Msa0823310:five_prime_UTR 20.0%
!!! GAAAAGTATATATCTTGTAT+TGG + chr5_3:61984235-61984254 Msa0823310:intron 20.0%
!! AATATGGAAATTCTGAATTA+GGG - chr5_3:61984391-61984410 None:intergenic 20.0%
!!! TTTTTATTGTCTGATTAAGA+AGG - chr5_3:61984726-61984745 None:intergenic 20.0%
!! ATCAAAAATAGGATTACAAT+TGG - chr5_3:61984857-61984876 None:intergenic 20.0%
!! AAAATACCGAAATTGAAATT+TGG - chr5_3:61985156-61985175 None:intergenic 20.0%
!!! AATATATGGTTAGCTAAATA+TGG + chr5_3:61985632-61985651 Msa0823310:intron 20.0%
!! AGAAAGTAAATATGTTATCA+TGG + chr5_3:61985738-61985757 Msa0823310:CDS 20.0%
!! TTAGAAGATGAAATAAATAG+AGG - chr5_3:61986330-61986349 None:intergenic 20.0%
!!! ATTTTTACTTTTCTACTTTC+AGG - chr5_3:61986369-61986388 None:intergenic 20.0%
!! TGAAAGTAGAAAAGTAAAAA+TGG + chr5_3:61986368-61986387 Msa0823310:intron 20.0%
!! TCATTTCAATATTCTAACTA+TGG + chr5_3:61986391-61986410 Msa0823310:intron 20.0%
!! GTACATGTATATATATACAT+TGG + chr5_3:61986834-61986853 Msa0823310:intron 20.0%
!! ATACTATATATATACACGAT+TGG - chr5_3:61987041-61987060 None:intergenic 20.0%
! ATCTATGTAAATAGTATGTC+CGG - chr5_3:61983896-61983915 None:intergenic 25.0%
! ATGATAGATTAGATTACCAT+AGG - chr5_3:61984152-61984171 None:intergenic 25.0%
! GAATATGGAAATTCTGAATT+AGG - chr5_3:61984392-61984411 None:intergenic 25.0%
! GAAACAAGAAACAAAATTAG+AGG - chr5_3:61984468-61984487 None:intergenic 25.0%
! CAAAAACATATATTGCTTGA+TGG - chr5_3:61984533-61984552 None:intergenic 25.0%
!!! TTTTCTGAAATGGATCAAAT+TGG - chr5_3:61984786-61984805 None:intergenic 25.0%
! TAATTATCCTATTAGAAACC+AGG + chr5_3:61984823-61984842 Msa0823310:intron 25.0%
! AATTATCCTATTAGAAACCA+GGG + chr5_3:61984824-61984843 Msa0823310:intron 25.0%
!!! AATAGGATTACAATTGGTTT+TGG - chr5_3:61984851-61984870 None:intergenic 25.0%
! GAAACAGATTCATCAAAAAT+AGG - chr5_3:61984868-61984887 None:intergenic 25.0%
! TGATTGATGAACAAACAATT+TGG - chr5_3:61984890-61984909 None:intergenic 25.0%
! ATACATAAGAGCAATGAATT+TGG - chr5_3:61985253-61985272 None:intergenic 25.0%
! CTGTAAAAGGGAAAAAAAAA+GGG - chr5_3:61985681-61985700 None:intergenic 25.0%
! TTGCAATTTATGGTACTATT+AGG + chr5_3:61985999-61986018 Msa0823310:intron 25.0%
!! TATGAAGAAAATGAAGCATT+TGG - chr5_3:61986129-61986148 None:intergenic 25.0%
!! ATTTTCTTCATATCACAAGA+GGG + chr5_3:61986137-61986156 Msa0823310:CDS 25.0%
!!! ATATTTTAGTTTTGCTCACA+TGG + chr5_3:61986246-61986265 Msa0823310:intron 25.0%
! TGACTAAAAATTAATTGAGG+TGG + chr5_3:61986534-61986553 Msa0823310:intron 25.0%
! TTAAGTTCTTAATATGCATG+AGG - chr5_3:61986564-61986583 None:intergenic 25.0%
!!! TTGTTTCTTTTTGCATTTTC+AGG + chr5_3:61986874-61986893 Msa0823310:intron 25.0%
!! TGTTTCTTTTTGCATTTTCA+GGG + chr5_3:61986875-61986894 Msa0823310:intron 25.0%
! ATACTGTAATGAACATATGA+TGG + chr5_3:61987059-61987078 Msa0823310:three_prime_UTR 25.0%
! TATTATAGTCTACATGACAA+CGG - chr5_3:61987155-61987174 None:intergenic 25.0%
! ATTTAAATGGTGTGAACAAA+CGG - chr5_3:61987180-61987199 None:intergenic 25.0%
! TGGCCGAAAATTTATTTAAA+TGG - chr5_3:61987193-61987212 None:intergenic 25.0%
! GAAACAAACATGAAACTTAA+AGG - chr5_3:61987231-61987250 None:intergenic 25.0%
!! ATAGATCCTTTAAGTTTCTA+AGG + chr5_3:61987253-61987272 Msa0823310:three_prime_UTR 25.0%
AATCTATCTTTGTCTCTTTC+CGG + chr5_3:61983874-61983893 Msa0823310:five_prime_UTR 30.0%
CAAAGACTTCACATAGTAAA+TGG - chr5_3:61984019-61984038 None:intergenic 30.0%
AATTCCCAATCTTGAACTTA+GGG - chr5_3:61984350-61984369 None:intergenic 30.0%
AAATTCCCAATCTTGAACTT+AGG - chr5_3:61984351-61984370 None:intergenic 30.0%
ATAATAGCAAGTGCAGAATA+TGG - chr5_3:61984407-61984426 None:intergenic 30.0%
! TTTGTGCATGTTTGAAATCA+CGG + chr5_3:61984549-61984568 Msa0823310:intron 30.0%
! TTTTTGATGCTTCAAAGTGT+TGG + chr5_3:61984597-61984616 Msa0823310:intron 30.0%
!! TAATTATTGCTTTTGTTCCC+TGG - chr5_3:61984809-61984828 None:intergenic 30.0%
GTATTCATCAATAAGAACAG+TGG - chr5_3:61985052-61985071 None:intergenic 30.0%
GATGGTCCAAATTTCAATTT+CGG + chr5_3:61985147-61985166 Msa0823310:intron 30.0%
ACTGCTCGATATTGATATAA+TGG + chr5_3:61985178-61985197 Msa0823310:intron 30.0%
AGTTGGAATATGCAATTTCA+TGG - chr5_3:61985221-61985240 None:intergenic 30.0%
! ATTTAGTACGACGAATTTTC+AGG + chr5_3:61985310-61985329 Msa0823310:intron 30.0%
! TTTAGTACGACGAATTTTCA+GGG + chr5_3:61985311-61985330 Msa0823310:intron 30.0%
!!! TATTTAGCCACATTGGTTTT+AGG - chr5_3:61985359-61985378 None:intergenic 30.0%
!! AGAATACACCATTCTGAAAT+TGG + chr5_3:61985566-61985585 Msa0823310:CDS 30.0%
CCTGTAAAAGGGAAAAAAAA+AGG - chr5_3:61985682-61985701 None:intergenic 30.0%
!!! CCTTTTTTTTTCCCTTTTAC+AGG + chr5_3:61985679-61985698 Msa0823310:intron 30.0%
! CATTTTCTTCATATCACAAG+AGG + chr5_3:61986136-61986155 Msa0823310:CDS 30.0%
! AATGAAAGGAACTTGTTTCT+AGG - chr5_3:61986486-61986505 None:intergenic 30.0%
ATTACTGAGCTTCAAACTTT+AGG - chr5_3:61986924-61986943 None:intergenic 30.0%
TTTAAATGGTGTGAACAAAC+GGG - chr5_3:61987179-61987198 None:intergenic 30.0%
AACATGAAACTTAAAGGATC+CGG - chr5_3:61987225-61987244 None:intergenic 30.0%
CTGAAACCTTAGAAACTTAA+AGG - chr5_3:61987262-61987281 None:intergenic 30.0%
TAAATGGATAACGCAGAATG+TGG - chr5_3:61984003-61984022 None:intergenic 35.0%
GGTAGATGAAATCTCATCAA+TGG - chr5_3:61984120-61984139 None:intergenic 35.0%
AATCACCCTAAGTTCAAGAT+TGG + chr5_3:61984342-61984361 Msa0823310:intron 35.0%
ATCACCCTAAGTTCAAGATT+GGG + chr5_3:61984343-61984362 Msa0823310:intron 35.0%
AACCAGAGATCAAAAGAGTA+TGG + chr5_3:61984753-61984772 Msa0823310:intron 35.0%
TTGATCCATTTCAGAAAACC+AGG + chr5_3:61984788-61984807 Msa0823310:intron 35.0%
TGATCCATTTCAGAAAACCA+GGG + chr5_3:61984789-61984808 Msa0823310:intron 35.0%
!! CTTCCTTTGGTCATTTTATG+AGG + chr5_3:61985002-61985021 Msa0823310:intron 35.0%
ATACTCCTCAATATTGCTCT+TGG + chr5_3:61985068-61985087 Msa0823310:intron 35.0%
CATATCCAAGAGCAATATTG+AGG - chr5_3:61985076-61985095 None:intergenic 35.0%
CTCAATATTGCTCTTGGATA+TGG + chr5_3:61985074-61985093 Msa0823310:intron 35.0%
ACCAATGTGGCTAAATATGA+AGG + chr5_3:61985362-61985381 Msa0823310:CDS 35.0%
ACCTTCATATTTAGCCACAT+TGG - chr5_3:61985366-61985385 None:intergenic 35.0%
!! CTTGCATTTTAGTCATTGGT+TGG - chr5_3:61985460-61985479 None:intergenic 35.0%
CAACCAATGACTAAAATGCA+AGG + chr5_3:61985458-61985477 Msa0823310:CDS 35.0%
!! TAGCCTTGCATTTTAGTCAT+TGG - chr5_3:61985464-61985483 None:intergenic 35.0%
CCTTGTATATTCTGTTTGCT+TGG - chr5_3:61985524-61985543 None:intergenic 35.0%
CCAAGCAAACAGAATATACA+AGG + chr5_3:61985521-61985540 Msa0823310:CDS 35.0%
GCTAATCACCAATTTCAGAA+TGG - chr5_3:61985577-61985596 None:intergenic 35.0%
ACCACTCAATTCCTGTAAAA+GGG - chr5_3:61985693-61985712 None:intergenic 35.0%
! ACATTGACACTTTTGATGCA+AGG + chr5_3:61985839-61985858 Msa0823310:intron 35.0%
TTGAATGTAATCGCATGTGT+CGG - chr5_3:61985900-61985919 None:intergenic 35.0%
ATGTCGCTCTTTGCAATTTA+TGG + chr5_3:61985989-61986008 Msa0823310:intron 35.0%
TTTGACAGATTGTCGATCAA+AGG + chr5_3:61986066-61986085 Msa0823310:intron 35.0%
GCTGATGTTCATGCTTATAT+CGG + chr5_3:61986429-61986448 Msa0823310:intron 35.0%
TTAGGGGGGAAAAAAATGAA+AGG - chr5_3:61986500-61986519 None:intergenic 35.0%
TCATTTGAACTGCCAAGTTA+GGG - chr5_3:61986517-61986536 None:intergenic 35.0%
ATTAAAGTGATGCAGTAGCT+AGG - chr5_3:61986615-61986634 None:intergenic 35.0%
!! TCTTTTTGCATTTTCAGGGA+TGG + chr5_3:61986879-61986898 Msa0823310:intron 35.0%
ATTGCCAACTCTACTATGAT+CGG - chr5_3:61986968-61986987 None:intergenic 35.0%
TGAACAGAAAATGTCTACAC+AGG + chr5_3:61987113-61987132 Msa0823310:three_prime_UTR 35.0%
TTAAATGGTGTGAACAAACG+GGG - chr5_3:61987178-61987197 None:intergenic 35.0%
ACATGAAACTTAAAGGATCC+GGG - chr5_3:61987224-61987243 None:intergenic 35.0%
AATGTGGCACATATATGGAG+GGG - chr5_3:61983987-61984006 None:intergenic 40.0%
GAATGTGGCACATATATGGA+GGG - chr5_3:61983988-61984007 None:intergenic 40.0%
AGAATGTGGCACATATATGG+AGG - chr5_3:61983989-61984008 None:intergenic 40.0%
!! CCATTTCTAGCTAGTTAACG+TGG - chr5_3:61984046-61984065 None:intergenic 40.0%
CCACGTTAACTAGCTAGAAA+TGG + chr5_3:61984043-61984062 Msa0823310:exon 40.0%
GCTAGAAATGGAGAATGAGT+TGG + chr5_3:61984055-61984074 Msa0823310:exon 40.0%
CTCATCAATGGAAGCAAAGT+GGG - chr5_3:61984108-61984127 None:intergenic 40.0%
TCTCATCAATGGAAGCAAAG+TGG - chr5_3:61984109-61984128 None:intergenic 40.0%
GATTACCATAGGCAGAAGAT+GGG - chr5_3:61984141-61984160 None:intergenic 40.0%
AGATTACCATAGGCAGAAGA+TGG - chr5_3:61984142-61984161 None:intergenic 40.0%
! TGCATGTTTGAAATCACGGT+GGG + chr5_3:61984553-61984572 Msa0823310:intron 40.0%
!! CATGTTTGAATTGGTGGTGT+TGG - chr5_3:61984643-61984662 None:intergenic 40.0%
ACAGTGCATGTTTGAATTGG+TGG - chr5_3:61984649-61984668 None:intergenic 40.0%
GAGACAGTGCATGTTTGAAT+TGG - chr5_3:61984652-61984671 None:intergenic 40.0%
! CTCCATACTCTTTTGATCTC+TGG - chr5_3:61984758-61984777 None:intergenic 40.0%
!! TGTTCCCTGGTTTTCTGAAA+TGG - chr5_3:61984796-61984815 None:intergenic 40.0%
TTTGGTCCCTGGTTTCTAAT+AGG - chr5_3:61984833-61984852 None:intergenic 40.0%
!!! TTACAATTGGTTTTGGTCCC+TGG - chr5_3:61984844-61984863 None:intergenic 40.0%
CTACCACTGCAATTCTGATA+GGG - chr5_3:61984923-61984942 None:intergenic 40.0%
ACTACCACTGCAATTCTGAT+AGG - chr5_3:61984924-61984943 None:intergenic 40.0%
GCTTAGGAGATGTGACAATA+AGG + chr5_3:61984955-61984974 Msa0823310:CDS 40.0%
CTGCCTCATAAAATGACCAA+AGG - chr5_3:61985008-61985027 None:intergenic 40.0%
GAATTTGGATTGCATGCAGT+TGG - chr5_3:61985238-61985257 None:intergenic 40.0%
!!! ATTGGTTTTAGGAGCAACAG+AGG - chr5_3:61985348-61985367 None:intergenic 40.0%
TGTTGCTCCTAAAACCAATG+TGG + chr5_3:61985349-61985368 Msa0823310:CDS 40.0%
CATGGCTCTCTTGCATAATT+AGG - chr5_3:61985389-61985408 None:intergenic 40.0%
! ACGATTGATTCTTTCCTTGC+AGG - chr5_3:61985422-61985441 None:intergenic 40.0%
! TTGAGCCACCTTCATTTTCT+AGG + chr5_3:61985498-61985517 Msa0823310:CDS 40.0%
TTGCTTGGCCTAGAAAATGA+AGG - chr5_3:61985509-61985528 None:intergenic 40.0%
! TCCCTTTTACAGGAATTGAG+TGG + chr5_3:61985689-61985708 Msa0823310:intron 40.0%
GACCACTCAATTCCTGTAAA+AGG - chr5_3:61985694-61985713 None:intergenic 40.0%
AATTGAGTGGTCACCAAGAA+TGG + chr5_3:61985702-61985721 Msa0823310:CDS 40.0%
GATTCTGCAACATCCATTCT+TGG - chr5_3:61985718-61985737 None:intergenic 40.0%
GTTATCATGGTAGAAGTTCC+TGG + chr5_3:61985751-61985770 Msa0823310:CDS 40.0%
GATACTGTATGGACCATATG+AGG + chr5_3:61986161-61986180 Msa0823310:CDS 40.0%
ATGGACCATATGAGGTTGTT+TGG + chr5_3:61986169-61986188 Msa0823310:CDS 40.0%
GATGTTCATGCTTATATCGG+AGG + chr5_3:61986432-61986451 Msa0823310:intron 40.0%
!!! CATTTTTTTCCCCCCTAACT+TGG + chr5_3:61986502-61986521 Msa0823310:intron 40.0%
ATTTGAACTGCCAAGTTAGG+GGG - chr5_3:61986515-61986534 None:intergenic 40.0%
CATTTGAACTGCCAAGTTAG+GGG - chr5_3:61986516-61986535 None:intergenic 40.0%
GTCATTTGAACTGCCAAGTT+AGG - chr5_3:61986518-61986537 None:intergenic 40.0%
TTTGCCGATCATAGTAGAGT+TGG + chr5_3:61986961-61986980 Msa0823310:three_prime_UTR 40.0%
CATGAAACTTAAAGGATCCG+GGG - chr5_3:61987223-61987242 None:intergenic 40.0%
CGCAGAATGTGGCACATATA+TGG - chr5_3:61983992-61984011 None:intergenic 45.0%
ATCTACCCATCTTCTGCCTA+TGG + chr5_3:61984133-61984152 Msa0823310:CDS 45.0%
! GTGCATGTTTGAAATCACGG+TGG + chr5_3:61984552-61984571 Msa0823310:intron 45.0%
! GTTTGAAATCACGGTGGGTT+TGG + chr5_3:61984558-61984577 Msa0823310:intron 45.0%
ACTGCAATTCTGATAGGGAG+AGG - chr5_3:61984918-61984937 None:intergenic 45.0%
TCTCCCTATCAGAATTGCAG+TGG + chr5_3:61984917-61984936 Msa0823310:intron 45.0%
GTAGTCTGAACTCTGTGCTT+AGG + chr5_3:61984939-61984958 Msa0823310:CDS 45.0%
TCATGGAGTCAGAACATCAG+TGG - chr5_3:61985204-61985223 None:intergenic 45.0%
!! AGTACGACGAATTTTCAGGG+TGG + chr5_3:61985314-61985333 Msa0823310:intron 45.0%
CTTGCAGGTCTTGCAAAACA+TGG - chr5_3:61985407-61985426 None:intergenic 45.0%
! CATGTTTTGCAAGACCTGCA+AGG + chr5_3:61985405-61985424 Msa0823310:CDS 45.0%
CTTGGCCTAGAAAATGAAGG+TGG - chr5_3:61985506-61985525 None:intergenic 45.0%
! TCTTGTGTCGATGTTGTGTC+TGG + chr5_3:61985944-61985963 Msa0823310:intron 45.0%
! TTGTGTCTGGAGTTGGTCTA+TGG + chr5_3:61985957-61985976 Msa0823310:intron 45.0%
! TGTGTCTGGAGTTGGTCTAT+GGG + chr5_3:61985958-61985977 Msa0823310:intron 45.0%
! GTAGACGCTCTACTAGTTCT+TGG + chr5_3:61986088-61986107 Msa0823310:CDS 45.0%
! ACTAGTTCTTGGAGAGAAGC+AGG + chr5_3:61986099-61986118 Msa0823310:CDS 45.0%
CACAAGAGGGAGATACTGTA+TGG + chr5_3:61986150-61986169 Msa0823310:CDS 45.0%
AGTGGCCAAACAACCTCATA+TGG - chr5_3:61986177-61986196 None:intergenic 45.0%
ACATTGTCCTTGTTCACACG+AGG - chr5_3:61986204-61986223 None:intergenic 45.0%
TCATGCTTATATCGGAGGCA+AGG + chr5_3:61986437-61986456 Msa0823310:intron 45.0%
TTTGAACTGCCAAGTTAGGG+GGG - chr5_3:61986514-61986533 None:intergenic 45.0%
TCAACGAGAAGTCTACTCAG+TGG - chr5_3:61986789-61986808 None:intergenic 45.0%
! TTTTCGGCCAAATACATCCC+CGG + chr5_3:61987203-61987222 Msa0823310:three_prime_UTR 45.0%
AAAGGATCCGGGGATGTATT+TGG - chr5_3:61987213-61987232 None:intergenic 45.0%
!! TAATAATATTCAATAAAATA+AGG + chr5_3:61984489-61984508 Msa0823310:intron 5.0%
! ACGGTGGGTTTGGCAAAATC+AGG + chr5_3:61984568-61984587 Msa0823310:intron 50.0%
! CGGTGGGTTTGGCAAAATCA+GGG + chr5_3:61984569-61984588 Msa0823310:intron 50.0%
GACCAAAGGAAGCAGATGCT+TGG - chr5_3:61984994-61985013 None:intergenic 50.0%
CATGCAGTCAGGAGCAAGAT+CGG + chr5_3:61985125-61985144 Msa0823310:intron 50.0%
! AGAAGTTCCTGGTGTCAGTG+TGG + chr5_3:61985762-61985781 Msa0823310:intron 50.0%
! GAAGTTCCTGGTGTCAGTGT+GGG + chr5_3:61985763-61985782 Msa0823310:intron 50.0%
CAGTGTGGGTGACATAAGAG+TGG + chr5_3:61985777-61985796 Msa0823310:intron 50.0%
TGTGGGTGACATAAGAGTGG+AGG + chr5_3:61985780-61985799 Msa0823310:intron 50.0%
TGCAAGGCTTGTCTAGTGTC+TGG + chr5_3:61985855-61985874 Msa0823310:intron 50.0%
TTGTCTAGTGTCTGGCACGT+GGG + chr5_3:61985863-61985882 Msa0823310:intron 50.0%
! GTAATCGCATGTGTCGGTGT+CGG - chr5_3:61985894-61985913 None:intergenic 50.0%
! GTCGATGTTGTGTCTGGAGT+TGG + chr5_3:61985950-61985969 Msa0823310:intron 50.0%
TTGTTCACACGAGGAGGAAG+TGG - chr5_3:61986195-61986214 None:intergenic 50.0%
ACTTCCTCCTCGTGTGAACA+AGG + chr5_3:61986194-61986213 Msa0823310:CDS 50.0%
TTGTCCTTGTTCACACGAGG+AGG - chr5_3:61986201-61986220 None:intergenic 50.0%
CGCCAAGCATCTGCTTCCTT+TGG + chr5_3:61984989-61985008 Msa0823310:intron 55.0%
GAGGCAGACATCAGCTGAAG+AGG + chr5_3:61985021-61985040 Msa0823310:intron 55.0%
CAGTCAGGAGCAAGATCGGA+TGG + chr5_3:61985129-61985148 Msa0823310:intron 55.0%
ATGTCACCCACACTGACACC+AGG - chr5_3:61985772-61985791 None:intergenic 55.0%
CTTGTCTAGTGTCTGGCACG+TGG + chr5_3:61985862-61985881 Msa0823310:intron 55.0%
TGTCTAGTGTCTGGCACGTG+GGG + chr5_3:61985864-61985883 Msa0823310:intron 55.0%
TCTCGCGCAGTCATGCAGTC+AGG + chr5_3:61985114-61985133 Msa0823310:intron 60.0%
GTCTAGTGTCTGGCACGTGG+GGG + chr5_3:61985865-61985884 Msa0823310:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 61983870 61987281 61983870 ID=Msa0823310;Name=Msa0823310
chr5_3 mRNA 61983870 61987281 61983870 ID=Msa0823310-mRNA-1;Parent=Msa0823310;Name=Msa0823310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=192|0.6|0.5|1|1|1|6|349|220
chr5_3 exon 61983870 61984154 61983870 ID=Msa0823310-mRNA-1:exon:19146;Parent=Msa0823310-mRNA-1
chr5_3 exon 61984929 61984976 61984929 ID=Msa0823310-mRNA-1:exon:19147;Parent=Msa0823310-mRNA-1
chr5_3 exon 61985332 61985587 61985332 ID=Msa0823310-mRNA-1:exon:19148;Parent=Msa0823310-mRNA-1
chr5_3 exon 61985701 61985778 61985701 ID=Msa0823310-mRNA-1:exon:19149;Parent=Msa0823310-mRNA-1
chr5_3 exon 61986088 61986238 61986088 ID=Msa0823310-mRNA-1:exon:19150;Parent=Msa0823310-mRNA-1
chr5_3 exon 61986896 61987281 61986896 ID=Msa0823310-mRNA-1:exon:19151;Parent=Msa0823310-mRNA-1
chr5_3 five_prime_UTR 61983870 61984061 61983870 ID=Msa0823310-mRNA-1:five_prime_utr;Parent=Msa0823310-mRNA-1
chr5_3 CDS 61984062 61984154 61984062 ID=Msa0823310-mRNA-1:cds;Parent=Msa0823310-mRNA-1
chr5_3 CDS 61984929 61984976 61984929 ID=Msa0823310-mRNA-1:cds;Parent=Msa0823310-mRNA-1
chr5_3 CDS 61985332 61985587 61985332 ID=Msa0823310-mRNA-1:cds;Parent=Msa0823310-mRNA-1
chr5_3 CDS 61985701 61985778 61985701 ID=Msa0823310-mRNA-1:cds;Parent=Msa0823310-mRNA-1
chr5_3 CDS 61986088 61986238 61986088 ID=Msa0823310-mRNA-1:cds;Parent=Msa0823310-mRNA-1
chr5_3 CDS 61986896 61986932 61986896 ID=Msa0823310-mRNA-1:cds;Parent=Msa0823310-mRNA-1
chr5_3 three_prime_UTR 61986933 61987281 61986933 ID=Msa0823310-mRNA-1:three_prime_utr;Parent=Msa0823310-mRNA-1
Gene Sequence

>Msa0823310

ATGGAGAATGAGTTGGTGAAACGCAGAATTGATACTATTGCAGCCCACTTTGCTTCCATTGATGAGATTTCATCTACCCATCTTCTGCCTATGAATTGCAGTGGTAGTCTGAACTCTGTGCTTAGGAGATGTGACAATAAGGGTGGCTTAACATCCTCTGTTGCTCCTAAAACCAATGTGGCTAAATATGAAGGTCCTAATTATGCAAGAGAGCCATGTTTTGCAAGACCTGCAAGGAAAGAATCAATCGTTTCAAATTCAGTTGTCCAACCAATGACTAAAATGCAAGGCTATAATTTTGATTCACTTGAGCCACCTTCATTTTCTAGGCCAAGCAAACAGAATATACAAGGAGAACAGCTAAATAATGAGAAAAGAATACACCATTCTGAAATTGGAATTGAGTGGTCACCAAGAATGGATGTTGCAGAATCAGAAAGTAAATATGTTATCATGGTAGAAGTTCCTGGTGTCAGTAGACGCTCTACTAGTTCTTGGAGAGAAGCAGGTTGTCCAAATGCTTCATTTTCTTCATATCACAAGAGGGAGATACTGTATGGACCATATGAGGTTGTTTGGCCACTTCCTCCTCGTGTGAACAAGGACAATGTATCAGCTGAATTTTTGGATGGATTTTTACAAATTATAATTCCTAAAGTTTGA

Protein sequence

>Msa0823310

MENELVKRRIDTIAAHFASIDEISSTHLLPMNCSGSLNSVLRRCDNKGGLTSSVAPKTNVAKYEGPNYAREPCFARPARKESIVSNSVVQPMTKMQGYNFDSLEPPSFSRPSKQNIQGEQLNNEKRIHHSEIGIEWSPRMDVAESESKYVIMVEVPGVSRRSTSSWREAGCPNASFSSYHKREILYGPYEVVWPLPPRVNKDNVSAEFLDGFLQIIIPKV*