AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0014590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0014590 MtrunA17_Chr1g0165011 87.643 437 13 3 2 397 16 452 0.0 765
Msa0014590 MtrunA17_Chr8g0375751 64.303 423 108 5 2 397 14 420 0.0 523
Msa0014590 MtrunA17_Chr6g0479511 49.866 373 149 6 25 359 15 387 1.10e-123 363
Msa0014590 MtrunA17_Chr7g0263111 44.379 338 141 5 45 358 84 398 4.05e-90 279
Msa0014590 MtrunA17_Chr6g0452181 41.551 361 164 8 49 366 55 411 1.07e-86 270
Msa0014590 MtrunA17_Chr5g0394901 50.439 228 86 2 155 355 360 587 1.60e-72 238
Msa0014590 MtrunA17_Chr5g0394901 54.667 75 33 1 46 120 90 163 1.38e-17 84.7
Msa0014590 MtrunA17_Chr1g0185281 50.216 231 88 2 155 358 294 524 3.93e-72 235
Msa0014590 MtrunA17_Chr1g0185281 55.263 76 33 1 45 120 87 161 1.42e-18 87.8
Msa0014590 MtrunA17_Chr1g0205121 49.561 228 88 2 155 355 321 548 2.79e-71 234
Msa0014590 MtrunA17_Chr1g0205121 53.333 75 34 1 46 120 88 161 4.30e-18 86.3
Msa0014590 MtrunA17_Chr8g0382571 49.576 236 92 2 155 363 219 454 1.72e-70 229
Msa0014590 MtrunA17_Chr8g0382571 54.795 73 32 1 48 120 37 108 8.06e-17 82.0
Msa0014590 MtrunA17_Chr8g0355021 49.130 230 89 2 155 356 233 462 3.25e-70 228
Msa0014590 MtrunA17_Chr8g0355021 38.261 115 64 2 6 120 24 131 1.51e-15 78.2
Msa0014590 MtrunA17_Chr7g0260081 49.123 228 89 2 155 355 294 521 1.30e-69 229
Msa0014590 MtrunA17_Chr7g0260081 53.947 76 34 1 45 120 87 161 2.60e-17 84.0
Msa0014590 MtrunA17_Chr1g0201271 48.661 224 92 2 155 356 377 599 5.11e-66 221
Msa0014590 MtrunA17_Chr1g0201271 38.843 121 65 4 6 121 56 172 2.84e-14 74.7
Msa0014590 MtrunA17_Chr6g0466801 48.472 229 95 2 155 361 375 602 1.65e-63 214
Msa0014590 MtrunA17_Chr6g0466801 40.187 107 51 3 48 142 96 201 1.58e-15 78.6
Msa0014590 MtrunA17_Chr4g0054941 45.575 226 99 1 155 356 316 541 6.06e-62 209
Msa0014590 MtrunA17_Chr4g0054941 51.351 74 36 0 48 121 71 144 4.67e-16 80.1
Msa0014590 MtrunA17_Chr4g0054951 45.575 226 99 1 155 356 316 541 3.87e-61 207
Msa0014590 MtrunA17_Chr4g0054951 48.649 74 37 1 48 121 74 146 1.37e-13 72.4
Msa0014590 MtrunA17_Chr5g0400311 46.903 226 96 1 155 356 373 598 4.51e-61 207
Msa0014590 MtrunA17_Chr5g0400311 48.649 74 37 1 48 121 104 176 7.72e-16 79.3
Msa0014590 MtrunA17_Chr1g0189231 24.515 412 209 14 10 354 494 870 1.55e-24 106
Msa0014590 MtrunA17_Chr6g0488541 36.170 94 59 1 228 320 780 873 9.43e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0014590 AT2G01900.1 58.209 402 132 4 2 374 8 402 2.34e-162 462
Msa0014590 AT2G01900.3 58.209 402 132 4 2 374 16 410 4.63e-162 462
Msa0014590 AT2G01900.2 56.965 402 128 5 2 374 8 393 1.57e-154 442
Msa0014590 AT2G37440.1 43.659 410 172 7 1 354 16 422 8.40e-103 313
Msa0014590 AT2G37440.3 43.659 410 172 7 1 354 16 422 8.40e-103 313
Msa0014590 AT2G37440.2 46.742 353 130 8 52 356 1 343 3.77e-96 293
Msa0014590 AT5G65090.2 51.515 231 85 2 155 358 205 435 7.94e-74 238
Msa0014590 AT5G65090.2 50.000 74 36 1 48 121 8 80 1.31e-15 78.6
Msa0014590 AT5G65090.3 51.515 231 85 2 155 358 268 498 4.09e-73 238
Msa0014590 AT5G65090.3 50.000 74 36 1 48 121 71 143 1.73e-15 78.6
Msa0014590 AT5G65090.1 51.515 231 85 2 155 358 268 498 4.09e-73 238
Msa0014590 AT5G65090.1 50.000 74 36 1 48 121 71 143 1.73e-15 78.6
Msa0014590 AT1G05470.2 50.000 228 87 2 155 355 355 582 9.43e-73 239
Msa0014590 AT1G05470.2 54.545 77 34 1 46 122 88 163 2.91e-19 90.1
Msa0014590 AT1G05470.1 50.000 228 87 2 155 355 355 582 9.43e-73 239
Msa0014590 AT1G05470.1 54.545 77 34 1 46 122 88 163 2.91e-19 90.1
Msa0014590 AT2G32010.2 50.439 228 86 2 155 355 332 559 9.85e-73 238
Msa0014590 AT2G32010.2 54.667 75 33 1 46 120 87 160 4.05e-19 89.7
Msa0014590 AT2G32010.1 50.439 228 86 2 155 355 332 559 9.85e-73 238
Msa0014590 AT2G32010.1 54.667 75 33 1 46 120 87 160 4.05e-19 89.7
Msa0014590 AT2G32010.4 50.439 228 86 2 155 355 332 559 9.85e-73 238
Msa0014590 AT2G32010.4 54.667 75 33 1 46 120 87 160 4.05e-19 89.7
Msa0014590 AT2G32010.3 50.439 228 86 2 155 355 332 559 9.85e-73 238
Msa0014590 AT2G32010.3 54.667 75 33 1 46 120 87 160 4.05e-19 89.7
Msa0014590 AT3G63240.2 49.561 228 88 2 155 355 284 511 8.84e-70 229
Msa0014590 AT3G63240.2 58.571 70 28 1 51 120 89 157 1.23e-17 85.1
Msa0014590 AT3G63240.1 49.561 228 88 2 155 355 284 511 8.84e-70 229
Msa0014590 AT3G63240.1 58.571 70 28 1 51 120 89 157 1.23e-17 85.1
Msa0014590 AT5G04980.4 47.826 230 92 3 155 356 163 392 2.67e-68 221
Msa0014590 AT1G34120.5 48.052 231 96 3 155 361 188 418 4.90e-68 222
Msa0014590 AT5G04980.1 47.826 230 92 3 155 356 198 427 8.07e-68 221
Msa0014590 AT5G04980.1 54.412 68 30 1 48 115 7 73 1.11e-15 79.0
Msa0014590 AT5G04980.3 47.826 230 92 3 155 356 198 427 8.07e-68 221
Msa0014590 AT5G04980.3 54.412 68 30 1 48 115 7 73 1.11e-15 79.0
Msa0014590 AT5G04980.2 47.826 230 92 3 155 356 227 456 1.03e-67 222
Msa0014590 AT5G04980.2 46.667 90 41 2 26 115 20 102 1.09e-15 79.0
Msa0014590 AT1G34120.2 48.052 231 96 3 155 361 343 573 2.08e-66 221
Msa0014590 AT1G34120.2 46.053 76 40 1 46 121 101 175 5.88e-15 77.0
Msa0014590 AT1G34120.1 48.052 231 96 3 155 361 339 569 2.20e-66 221
Msa0014590 AT1G34120.1 46.053 76 40 1 46 121 97 171 6.01e-15 77.0
Msa0014590 AT1G34120.3 48.052 231 95 4 155 361 343 572 1.26e-64 217
Msa0014590 AT1G34120.3 46.053 76 40 1 46 121 101 175 5.92e-15 77.0
Msa0014590 AT1G71710.2 45.852 229 102 1 155 361 405 633 1.77e-61 210
Msa0014590 AT1G71710.2 47.126 87 41 2 35 121 108 189 2.12e-17 84.7
Msa0014590 AT1G71710.1 45.852 229 102 1 155 361 414 642 2.39e-61 209
Msa0014590 AT1G71710.1 47.126 87 41 2 35 121 117 198 2.16e-17 84.7
Msa0014590 AT4G18010.1 45.133 226 100 1 155 356 395 620 8.00e-61 208
Msa0014590 AT4G18010.1 56.338 71 30 1 51 121 112 181 1.82e-16 81.6
Msa0014590 AT4G18010.2 46.739 184 96 1 155 336 395 578 7.25e-49 174
Msa0014590 AT4G18010.2 56.338 71 30 1 51 121 112 181 1.77e-16 81.6
Msa0014590 AT1G34120.4 50.735 136 65 2 155 288 339 474 4.50e-39 146
Msa0014590 AT1G34120.4 46.053 76 40 1 46 121 97 171 4.79e-15 77.0
Msa0014590 AT1G65580.2 25.000 384 186 12 44 354 266 620 8.88e-27 113
Msa0014590 AT1G65580.1 25.000 384 186 12 44 354 532 886 2.50e-26 112
Msa0014590 AT2G31830.2 24.786 468 234 16 10 395 547 978 5.72e-24 105
Msa0014590 AT2G31830.1 24.786 468 234 16 10 395 547 978 5.99e-24 104
Msa0014590 AT2G31830.3 25.797 345 188 10 10 320 547 857 1.56e-23 103
Msa0014590 AT1G05630.3 24.855 346 190 10 10 320 538 848 1.78e-23 103
Msa0014590 AT1G05630.2 24.855 346 190 10 10 320 538 848 2.25e-23 103
Msa0014590 AT2G43900.2 25.817 306 163 10 51 320 577 854 3.49e-22 99.8
Msa0014590 AT2G43900.1 25.817 306 163 10 51 320 577 854 3.94e-22 99.4
Msa0014590 AT1G47510.1 27.407 270 136 12 52 317 56 269 1.17e-14 75.1
Msa0014590 AT1G47510.4 35.000 140 76 6 180 317 81 207 2.02e-14 73.6
Msa0014590 AT1G05630.1 24.490 245 142 8 10 246 538 747 5.72e-12 68.2

Find 63 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTGATATCTATGTATT+TGG 0.059903 1_1:-23217591 Msa0014590:CDS
TGGATCACTATGATCATTAA+TGG 0.196914 1_1:+23217860 None:intergenic
AAATTCAAACTTGTGCCTTT+AGG 0.269796 1_1:+23216036 None:intergenic
TCATGATCAAGAATCTTTCT+TGG 0.273995 1_1:+23216012 None:intergenic
AGTAAGCGTGTGGTTTCTTC+TGG 0.287735 1_1:+23215226 None:intergenic
ACTATGATCATTAATGGATT+TGG 0.307634 1_1:+23217866 None:intergenic
TGTGGCATCATGGGCTTCTT+AGG 0.310282 1_1:-23216815 Msa0014590:CDS
GTGTGCAGTCATCTAGCTTC+TGG 0.323109 1_1:-23216126 Msa0014590:CDS
ATAGTAAGATTTCAACAAAA+TGG 0.329956 1_1:-23217093 Msa0014590:CDS
AATACATTTGATGCATTTAG+TGG 0.341530 1_1:+23217127 None:intergenic
CCTTTGATATCTATGTATTT+GGG 0.345233 1_1:-23217590 Msa0014590:intron
ACTAAATGCATCAAATGTAT+TGG 0.366321 1_1:-23217125 Msa0014590:CDS
TTAGGTGTGACAGAGTTATA+TGG 0.379211 1_1:-23214264 Msa0014590:intron
CTAAATGCATCAAATGTATT+GGG 0.392848 1_1:-23217124 Msa0014590:CDS
TCACTATTGGTAGACAATAA+AGG 0.393933 1_1:+23217909 None:intergenic
AGATAATTGATCATCACTAT+TGG 0.426716 1_1:+23217896 None:intergenic
TCAATATTCAACCCTTCATC+TGG 0.430166 1_1:+23217639 None:intergenic
AAACCATTAATATTTACAAC+CGG 0.448159 1_1:+23214026 None:intergenic
ATGTGTTGGATGTGGCATCA+TGG 0.454248 1_1:-23216825 Msa0014590:CDS
ATTTGTTTAAGATACTAAAC+AGG 0.458118 1_1:-23217980 Msa0014590:intron
GCTGATTTACACTGCTGAGC+TGG 0.467900 1_1:+23216953 None:intergenic
TTGTATCATTAGCAAGCAAA+TGG 0.470095 1_1:-23216915 Msa0014590:intron
TGCAGTCATGTAATATTGCT+TGG 0.474593 1_1:-23215274 Msa0014590:intron
TTAGAAATGCTTTGAACAAG+AGG 0.475137 1_1:-23217060 Msa0014590:CDS
TTTGTTAGTACATGGAACAT+AGG 0.487262 1_1:-23217672 Msa0014590:CDS
TTCTTCCCTCACAATGTCAA+AGG 0.488930 1_1:-23218310 None:intergenic
TGTGACAGAGTTATATGGTT+AGG 0.491789 1_1:-23214259 Msa0014590:CDS
TTACATACAAACTCATCAGT+AGG 0.492553 1_1:+23214064 None:intergenic
TTCCCTATTAGAAAATGATC+AGG 0.493915 1_1:-23215182 Msa0014590:intron
AAGAGGGAGATGAGAAGCAT+AGG 0.494296 1_1:-23216098 Msa0014590:CDS
TGTGTTGGATGTGGCATCAT+GGG 0.501040 1_1:-23216824 Msa0014590:CDS
GCTGTAAACAATGCCTTGAC+AGG 0.502522 1_1:+23214178 None:intergenic
AATGAAATTGAAGCTAAAGA+TGG 0.505405 1_1:-23214530 Msa0014590:intron
TACATACAAACTCATCAGTA+GGG 0.506932 1_1:+23214065 None:intergenic
ATGTTAAGAGGTTGGCATGA+AGG 0.507834 1_1:-23214490 Msa0014590:CDS
AGATGAAGGGTTGAATATTG+AGG 0.512538 1_1:-23217637 Msa0014590:CDS
GGTGGAATTGCACCAGATGA+AGG 0.513447 1_1:-23217651 Msa0014590:CDS
AATAAAGGATCTGTATAACT+TGG 0.514081 1_1:+23217924 None:intergenic
GAGAGTGGACAAATGTTAAG+AGG 0.517143 1_1:-23214502 Msa0014590:CDS
TCTAGCTTCTGGAGGAAAAG+AGG 0.527516 1_1:-23216115 Msa0014590:CDS
GATGTCTAATGAAAGGACTA+AGG 0.530564 1_1:+23216858 None:intergenic
CTCTCTGAAAGAAACATGCT+AGG 0.537866 1_1:+23214121 None:intergenic
ATCATTAGCAAGCAAATGGT+TGG 0.540433 1_1:-23216911 Msa0014590:intron
CTAGCTTCTGGAGGAAAAGA+GGG 0.552266 1_1:-23216114 Msa0014590:CDS
CATCCATGTGTCTCATGTGT+TGG 0.554145 1_1:-23216839 Msa0014590:CDS
AAGATACTAAACAGGAGACT+TGG 0.555479 1_1:-23217972 Msa0014590:CDS
GTGGACAAATGTTAAGAGGT+TGG 0.555687 1_1:-23214498 Msa0014590:CDS
TTGTTGCAAAGATATTGAAA+AGG 0.556407 1_1:-23217026 Msa0014590:CDS
AGAGTTATATGGTTAGGCAA+TGG 0.561868 1_1:-23214253 Msa0014590:CDS
ATCAGATCATAGACCTGTCA+AGG 0.564826 1_1:-23214191 Msa0014590:CDS
CTAAAGATGGAGCTAGAGAG+TGG 0.565209 1_1:-23214517 Msa0014590:CDS
TGTGTCTCATGTGTTGGATG+TGG 0.571735 1_1:-23216833 Msa0014590:CDS
ATTGTTTACAGCAGAAGTCA+AGG 0.572440 1_1:-23214167 Msa0014590:CDS
CATGGGCTTCTTAGGCAACA+AGG 0.587041 1_1:-23216807 Msa0014590:intron
CCCAAATACATAGATATCAA+AGG 0.590421 1_1:+23217590 None:intergenic
GTTAGTACATGGAACATAGG+TGG 0.598161 1_1:-23217669 Msa0014590:CDS
TCTCTGAAAGAAACATGCTA+GGG 0.607994 1_1:+23214122 None:intergenic
ACACATGGATGTCTAATGAA+AGG 0.608846 1_1:+23216851 None:intergenic
GTGGAATTGCACCAGATGAA+GGG 0.609719 1_1:-23217650 Msa0014590:CDS
CATCCAACACATGAGACACA+TGG 0.611478 1_1:+23216836 None:intergenic
GATTTGAAGAATATTTGTCA+AGG 0.612327 1_1:-23216983 Msa0014590:CDS
TGCAGTCATCTAGCTTCTGG+AGG 0.612853 1_1:-23216123 Msa0014590:CDS
ACATACAAACTCATCAGTAG+GGG 0.642428 1_1:+23214066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr1_1:23215038-23215057 None:intergenic 0.0%
!! TTTATATTTATATTTATATA+TGG - chr1_1:23215126-23215145 Msa0014590:intron 0.0%
!!! TAATTTTTTTTCATCAAATT+TGG + chr1_1:23214306-23214325 None:intergenic 10.0%
!! TATAAAATATAATATAAGCA+TGG + chr1_1:23217206-23217225 None:intergenic 10.0%
!! AATAATATATTCTTTATACT+AGG + chr1_1:23217712-23217731 None:intergenic 10.0%
!!! TTATTTTTTTTCTTCATTTT+AGG - chr1_1:23218054-23218073 Msa0014590:intron 10.0%
!!! ACTTTTAATTTATGTAAAGA+AGG + chr1_1:23214098-23214117 None:intergenic 15.0%
!! AAAAATTAAATTTCTTACCA+AGG - chr1_1:23214318-23214337 Msa0014590:intron 15.0%
!! AAAATTAAATTTCTTACCAA+GGG - chr1_1:23214319-23214338 Msa0014590:intron 15.0%
!! GAAATAGAAACATTAAAAAA+TGG - chr1_1:23214804-23214823 Msa0014590:intron 15.0%
!! AATAAAATTATCACTATGTT+TGG - chr1_1:23214906-23214925 Msa0014590:intron 15.0%
!! ATACATTTGATTAATCTAAT+TGG + chr1_1:23215675-23215694 None:intergenic 15.0%
!! TTCAATTTAAGCATTATTAT+TGG - chr1_1:23216543-23216562 Msa0014590:intron 15.0%
!!! CTAATGATATAGTTTAATTT+TGG + chr1_1:23216613-23216632 None:intergenic 15.0%
!! TGAATTTAAAAAATACTTGT+AGG + chr1_1:23217892-23217911 None:intergenic 15.0%
!! AAGAAAAAAAATAAGAAACT+TGG + chr1_1:23218048-23218067 None:intergenic 15.0%
!!! AGTATTGAAGAGTATAATAT+AGG + chr1_1:23214173-23214192 None:intergenic 20.0%
!! AAATGAAAGAAAATATGAGA+AGG + chr1_1:23214267-23214286 None:intergenic 20.0%
!!! ATTTGTTTAAGATACTAAAC+AGG - chr1_1:23214356-23214375 Msa0014590:intron 20.0%
!!! TTTTTTTGGTCTCAAAATTT+TGG - chr1_1:23214963-23214982 Msa0014590:intron 20.0%
!!! AATTAATCTTTTTACAATCC+AGG - chr1_1:23215171-23215190 Msa0014590:intron 20.0%
!! ATAGTAAGATTTCAACAAAA+TGG - chr1_1:23215243-23215262 Msa0014590:CDS 20.0%
!! AAGTAAGATGAATTAAAAGT+GGG + chr1_1:23215569-23215588 None:intergenic 20.0%
!! AAAGTAAGATGAATTAAAAG+TGG + chr1_1:23215570-23215589 None:intergenic 20.0%
!! GTGTCAAAATTGTTATATTT+AGG - chr1_1:23215770-23215789 Msa0014590:intron 20.0%
!! TTCTTAGGAATAACAAATTA+GGG + chr1_1:23215944-23215963 None:intergenic 20.0%
!! ATTCTTAGGAATAACAAATT+AGG + chr1_1:23215945-23215964 None:intergenic 20.0%
!! CAGGTTAAAAAAAAATTCTT+AGG + chr1_1:23215959-23215978 None:intergenic 20.0%
!!! TTAGCTTCCTTTTAATAATT+AGG - chr1_1:23216419-23216438 Msa0014590:intron 20.0%
!! AAAGGAACCTAATTATTAAA+AGG + chr1_1:23216429-23216448 None:intergenic 20.0%
!!! ATGATATAGTTTAATTTTGG+CGG + chr1_1:23216610-23216629 None:intergenic 20.0%
!! TAAATCAATGTATCTCTTTA+AGG + chr1_1:23216778-23216797 None:intergenic 20.0%
!! TGTTATTCAGTAATTAAAAG+AGG + chr1_1:23216828-23216847 None:intergenic 20.0%
!! AAGTTAATTTAAGCATAAGT+CGG + chr1_1:23216870-23216889 None:intergenic 20.0%
!! ATGTATGTCAAAGTAAATTT+AGG + chr1_1:23216940-23216959 None:intergenic 20.0%
!! ATGTATGTCAAAGTAAATTT+AGG + chr1_1:23216940-23216959 None:intergenic 20.0%
!!! TTTTCTCGAAAATACTTAAA+TGG + chr1_1:23217664-23217683 None:intergenic 20.0%
!!! AAAGTGAACATTTTTTTACT+AGG - chr1_1:23217681-23217700 Msa0014590:intron 20.0%
!! TTTAAAAAATACTTGTAGGT+TGG + chr1_1:23217888-23217907 None:intergenic 20.0%
!! TGAAGAGTATAATATAGGAA+TGG + chr1_1:23214168-23214187 None:intergenic 25.0%
! ATGATAAATATACAAACCCT+TGG + chr1_1:23214338-23214357 None:intergenic 25.0%
! AATAAAGGATCTGTATAACT+TGG + chr1_1:23214415-23214434 None:intergenic 25.0%
! AGATAATTGATCATCACTAT+TGG + chr1_1:23214443-23214462 None:intergenic 25.0%
!!! ACTATGATCATTAATGGATT+TGG + chr1_1:23214473-23214492 None:intergenic 25.0%
! TCCTTTGATATCTATGTATT+TGG - chr1_1:23214745-23214764 Msa0014590:intron 25.0%
! CCTTTGATATCTATGTATTT+GGG - chr1_1:23214746-23214765 Msa0014590:intron 25.0%
!!! AGATGGATTTCACATTTTTT+TGG - chr1_1:23214949-23214968 Msa0014590:intron 25.0%
! AATACATTTGATGCATTTAG+TGG + chr1_1:23215212-23215231 None:intergenic 25.0%
! ACTAAATGCATCAAATGTAT+TGG - chr1_1:23215211-23215230 Msa0014590:CDS 25.0%
! CTAAATGCATCAAATGTATT+GGG - chr1_1:23215212-23215231 Msa0014590:CDS 25.0%
! TTGTTGCAAAGATATTGAAA+AGG - chr1_1:23215310-23215329 Msa0014590:intron 25.0%
! GATTTGAAGAATATTTGTCA+AGG - chr1_1:23215353-23215372 Msa0014590:intron 25.0%
! TGATACAATGAAAATCTTGT+GGG + chr1_1:23215409-23215428 None:intergenic 25.0%
! ATGATACAATGAAAATCTTG+TGG + chr1_1:23215410-23215429 None:intergenic 25.0%
! AGTAAGATGAATTAAAAGTG+GGG + chr1_1:23215568-23215587 None:intergenic 25.0%
!! ATCTCAATTTGTTTGATTCA+AGG + chr1_1:23215864-23215883 None:intergenic 25.0%
! CAAACAAATTGAGATTTGAT+TGG - chr1_1:23215869-23215888 Msa0014590:intron 25.0%
! GAATCCAACATATTGAAATT+TGG - chr1_1:23216038-23216057 Msa0014590:CDS 25.0%
!! ATGTTGCTGAAATATTTTCT+AGG - chr1_1:23216268-23216287 Msa0014590:intron 25.0%
! AAGCTAAAACCAAATTATTG+AGG + chr1_1:23216406-23216425 None:intergenic 25.0%
!!! AGTTTATGCAACTTTTTTGT+TGG + chr1_1:23216704-23216723 None:intergenic 25.0%
!!! TTAGCTTGTTTTACTCTATT+TGG + chr1_1:23216728-23216747 None:intergenic 25.0%
! ATTAACTTTAGCATACATGT+TGG - chr1_1:23216882-23216901 Msa0014590:CDS 25.0%
!!! GATTTTTTTGACATACATGT+TGG - chr1_1:23216904-23216923 Msa0014590:CDS 25.0%
! ATTTACTTTGACATACATGT+TGG - chr1_1:23216942-23216961 Msa0014590:intron 25.0%
!! CAATTTTTCTACATACATGT+TGG - chr1_1:23217002-23217021 Msa0014590:CDS 25.0%
!! TACCTGATCATTTTCTAATA+GGG + chr1_1:23217159-23217178 None:intergenic 25.0%
!! ATACCTGATCATTTTCTAAT+AGG + chr1_1:23217160-23217179 None:intergenic 25.0%
! TCCATTCTTAGTAGATTTAT+CGG - chr1_1:23217734-23217753 Msa0014590:intron 25.0%
! AATGAAATTGAAGCTAAAGA+TGG - chr1_1:23217806-23217825 Msa0014590:intron 25.0%
! TTAAATTCAGATGAGTACTA+TGG - chr1_1:23217903-23217922 Msa0014590:CDS 25.0%
! TTGTTATCATGGAATGAAAA+AGG - chr1_1:23217929-23217948 Msa0014590:CDS 25.0%
! GTAAAAAACAATCAAGTTTC+CGG - chr1_1:23218291-23218310 Msa0014590:intron 25.0%
AAGGTGTACAATTTCTACAT+TGG + chr1_1:23214079-23214098 None:intergenic 30.0%
TCACTATTGGTAGACAATAA+AGG + chr1_1:23214430-23214449 None:intergenic 30.0%
TGGATCACTATGATCATTAA+TGG + chr1_1:23214479-23214498 None:intergenic 30.0%
! TCTTCTTACTTGTACTTTTG+TGG + chr1_1:23214499-23214518 None:intergenic 30.0%
TTTGTTAGTACATGGAACAT+AGG - chr1_1:23214664-23214683 Msa0014590:intron 30.0%
CCCAAATACATAGATATCAA+AGG + chr1_1:23214749-23214768 None:intergenic 30.0%
! TTAGAAATGCTTTGAACAAG+AGG - chr1_1:23215276-23215295 Msa0014590:intron 30.0%
GATACAATGAAAATCTTGTG+GGG + chr1_1:23215408-23215427 None:intergenic 30.0%
TTGTATCATTAGCAAGCAAA+TGG - chr1_1:23215421-23215440 Msa0014590:intron 30.0%
!!! TTGGTATTTTGATATCTGTG+TGG - chr1_1:23215444-23215463 Msa0014590:intron 30.0%
!!! TGGTATTTTGATATCTGTGT+GGG - chr1_1:23215445-23215464 Msa0014590:intron 30.0%
ATCTAATTGGACACTAATCA+AGG + chr1_1:23215662-23215681 None:intergenic 30.0%
! TTTTAACCTTAATCCTGAGT+CGG - chr1_1:23215799-23215818 Msa0014590:intron 30.0%
GGCATACTAAAACATCAAAA+AGG + chr1_1:23215923-23215942 None:intergenic 30.0%
TTCAGTTGGACAAATTTCAT+AGG + chr1_1:23215985-23216004 None:intergenic 30.0%
CCAACCAAATTTCAATATGT+TGG + chr1_1:23216045-23216064 None:intergenic 30.0%
CCAACATATTGAAATTTGGT+TGG - chr1_1:23216042-23216061 Msa0014590:CDS 30.0%
TTACTATTCTGACAAATTGC+AGG - chr1_1:23216140-23216159 Msa0014590:CDS 30.0%
TACTATTCTGACAAATTGCA+GGG - chr1_1:23216141-23216160 Msa0014590:CDS 30.0%
!! TCTAGGACAAATTTTCCTAA+AGG - chr1_1:23216285-23216304 Msa0014590:intron 30.0%
AAATTCAAACTTGTGCCTTT+AGG + chr1_1:23216303-23216322 None:intergenic 30.0%
TCATGATCAAGAATCTTTCT+TGG + chr1_1:23216327-23216346 None:intergenic 30.0%
! AATTATTGAGGTTGATTGGT+TGG + chr1_1:23216394-23216413 None:intergenic 30.0%
ACCAATCAACCTCAATAATT+TGG - chr1_1:23216394-23216413 Msa0014590:intron 30.0%
! ACCAAATTATTGAGGTTGAT+TGG + chr1_1:23216398-23216417 None:intergenic 30.0%
!!! CTTTGTTTTCATGATTTGGT+GGG + chr1_1:23216452-23216471 None:intergenic 30.0%
!!! ACTTTGTTTTCATGATTTGG+TGG + chr1_1:23216453-23216472 None:intergenic 30.0%
!!! AGCACTTTGTTTTCATGATT+TGG + chr1_1:23216456-23216475 None:intergenic 30.0%
AAATTGTTGTACTACCATAG+TGG - chr1_1:23216658-23216677 Msa0014590:intron 30.0%
AATTGTTGTACTACCATAGT+GGG - chr1_1:23216659-23216678 Msa0014590:intron 30.0%
! TACTTGTTGAAAAAAGAGAC+TGG - chr1_1:23217129-23217148 Msa0014590:CDS 30.0%
! ACTTGTTGAAAAAAGAGACT+GGG - chr1_1:23217130-23217149 Msa0014590:CDS 30.0%
TTCCCTATTAGAAAATGATC+AGG - chr1_1:23217154-23217173 Msa0014590:intron 30.0%
! AATGCTAACAACTTGCTTTA+CGG + chr1_1:23217380-23217399 None:intergenic 30.0%
AATTACACATAGAAAAGTCG+AGG - chr1_1:23217472-23217491 Msa0014590:intron 30.0%
CTTAAATGGTCACAAGTATT+TGG + chr1_1:23217650-23217669 None:intergenic 30.0%
TCCGATAAATCTACTAAGAA+TGG + chr1_1:23217738-23217757 None:intergenic 30.0%
TACTATGGATGTTGTTATCA+TGG - chr1_1:23217918-23217937 Msa0014590:CDS 30.0%
ATATGTTTCTTATACCATGC+TGG + chr1_1:23217972-23217991 None:intergenic 30.0%
TACATACAAACTCATCAGTA+GGG + chr1_1:23218274-23218293 None:intergenic 30.0%
TTACATACAAACTCATCAGT+AGG + chr1_1:23218275-23218294 None:intergenic 30.0%
GAAGATATCATGTTGAGGTA+TGG + chr1_1:23214142-23214161 None:intergenic 35.0%
GGATTGAAGATATCATGTTG+AGG + chr1_1:23214147-23214166 None:intergenic 35.0%
!!! TTCTGCTAGTTTTCTAGTCA+TGG + chr1_1:23214230-23214249 None:intergenic 35.0%
AAGATACTAAACAGGAGACT+TGG - chr1_1:23214364-23214383 Msa0014590:intron 35.0%
! ATATGCTGAAAAGGTGCATA+TGG - chr1_1:23214577-23214596 Msa0014590:intron 35.0%
! GAAGGGTTTTTGTTAGTACA+TGG - chr1_1:23214656-23214675 Msa0014590:intron 35.0%
TCAATATTCAACCCTTCATC+TGG + chr1_1:23214700-23214719 None:intergenic 35.0%
AGATGAAGGGTTGAATATTG+AGG - chr1_1:23214699-23214718 Msa0014590:intron 35.0%
TAATTTCAGCACTCACTTCA+TGG - chr1_1:23214769-23214788 Msa0014590:intron 35.0%
ATCATTAGCAAGCAAATGGT+TGG - chr1_1:23215425-23215444 Msa0014590:intron 35.0%
GATGTCTAATGAAAGGACTA+AGG + chr1_1:23215481-23215500 None:intergenic 35.0%
ACACATGGATGTCTAATGAA+AGG + chr1_1:23215488-23215507 None:intergenic 35.0%
! ATTAAAAGTGGGGTTTGGTT+AGG + chr1_1:23215558-23215577 None:intergenic 35.0%
GATGAATTAAAAGTGGGGTT+TGG + chr1_1:23215563-23215582 None:intergenic 35.0%
TATTGCAGTGATGAGATTAG+TGG + chr1_1:23215632-23215651 None:intergenic 35.0%
TTAGATTATTCCAACGACTG+AGG - chr1_1:23215719-23215738 Msa0014590:intron 35.0%
TATTGTGCATTCGAACACAT+AGG - chr1_1:23215895-23215914 Msa0014590:intron 35.0%
!!! TTTTCATGATTTGGTGGGAA+AGG + chr1_1:23216447-23216466 None:intergenic 35.0%
AATATCTCTTTGTCCCACTA+TGG + chr1_1:23216675-23216694 None:intergenic 35.0%
TGCAGTCATGTAATATTGCT+TGG - chr1_1:23217062-23217081 Msa0014590:CDS 35.0%
!! TTTTTCAACAAGTAAGCGTG+TGG + chr1_1:23217123-23217142 None:intergenic 35.0%
ATGTGTGTGTAAACACATAG+AGG - chr1_1:23217411-23217430 Msa0014590:intron 35.0%
TTAGGTGTGACAGAGTTATA+TGG - chr1_1:23218072-23218091 Msa0014590:intron 35.0%
TGTGACAGAGTTATATGGTT+AGG - chr1_1:23218077-23218096 Msa0014590:intron 35.0%
AGAGTTATATGGTTAGGCAA+TGG - chr1_1:23218083-23218102 Msa0014590:intron 35.0%
ATTGTTTACAGCAGAAGTCA+AGG - chr1_1:23218169-23218188 Msa0014590:intron 35.0%
! TCTCTGAAAGAAACATGCTA+GGG + chr1_1:23218217-23218236 None:intergenic 35.0%
ACATACAAACTCATCAGTAG+GGG + chr1_1:23218273-23218292 None:intergenic 35.0%
GATATCATGTTGAGGTATGG+AGG + chr1_1:23214139-23214158 None:intergenic 40.0%
CTAGTCATGGTATGAAACAG+TGG + chr1_1:23214217-23214236 None:intergenic 40.0%
ATGTGCAGCATATGCTGAAA+AGG - chr1_1:23214568-23214587 Msa0014590:intron 40.0%
! GAAAAGGTGCATATGGTTTG+TGG - chr1_1:23214584-23214603 Msa0014590:intron 40.0%
GTTAGTACATGGAACATAGG+TGG - chr1_1:23214667-23214686 Msa0014590:intron 40.0%
!! CACTTCATGGTTTTCTAGCA+TGG - chr1_1:23214782-23214801 Msa0014590:intron 40.0%
TCACTATGTTTGGCAACTCT+AGG - chr1_1:23214916-23214935 Msa0014590:intron 40.0%
! TATGTTTGGCAACTCTAGGA+CGG - chr1_1:23214920-23214939 Msa0014590:intron 40.0%
TGGCACAATTTCTTGAAACC+TGG + chr1_1:23215192-23215211 None:intergenic 40.0%
GGACAAATTTCATAGGATGC+AGG + chr1_1:23215978-23215997 None:intergenic 40.0%
TCCAACTGAATCTCAACTGT+TGG - chr1_1:23215995-23216014 Msa0014590:intron 40.0%
TCCAACAGTTGAGATTCAGT+TGG + chr1_1:23215999-23216018 None:intergenic 40.0%
CAATATGTTGGATTCGAGCT+AGG + chr1_1:23216033-23216052 None:intergenic 40.0%
! ATTGAGGTTGATTGGTTGGA+CGG + chr1_1:23216390-23216409 None:intergenic 40.0%
CAGAAGGACAAATTCAAAGC+TGG + chr1_1:23216575-23216594 None:intergenic 40.0%
TTGTCCTTCTGCTAGATTGA+AGG - chr1_1:23216584-23216603 Msa0014590:intron 40.0%
AGCATGGATACATGCATACA+CGG + chr1_1:23217190-23217209 None:intergenic 40.0%
AAAGTCGAGGAAGTCTTACA+TGG - chr1_1:23217485-23217504 Msa0014590:intron 40.0%
GAGAGTGGACAAATGTTAAG+AGG - chr1_1:23217834-23217853 Msa0014590:intron 40.0%
GTGGACAAATGTTAAGAGGT+TGG - chr1_1:23217838-23217857 Msa0014590:intron 40.0%
ATGTTAAGAGGTTGGCATGA+AGG - chr1_1:23217846-23217865 Msa0014590:intron 40.0%
ATCAGATCATAGACCTGTCA+AGG - chr1_1:23218145-23218164 Msa0014590:intron 40.0%
! CTCTCTGAAAGAAACATGCT+AGG + chr1_1:23218218-23218237 None:intergenic 40.0%
AGGTATGGAGGAACTTGAGA+AGG + chr1_1:23214127-23214146 None:intergenic 45.0%
GTGGAATTGCACCAGATGAA+GGG - chr1_1:23214686-23214705 Msa0014590:intron 45.0%
!! CTCTAGGACGGAATTAGAGA+TGG - chr1_1:23214932-23214951 Msa0014590:intron 45.0%
CATCCATGTGTCTCATGTGT+TGG - chr1_1:23215497-23215516 Msa0014590:intron 45.0%
CATCCAACACATGAGACACA+TGG + chr1_1:23215503-23215522 None:intergenic 45.0%
TGTGTCTCATGTGTTGGATG+TGG - chr1_1:23215503-23215522 Msa0014590:intron 45.0%
ATGTGTTGGATGTGGCATCA+TGG - chr1_1:23215511-23215530 Msa0014590:intron 45.0%
TGTGTTGGATGTGGCATCAT+GGG - chr1_1:23215512-23215531 Msa0014590:intron 45.0%
AACCTTAATCCTGAGTCGGA+CGG - chr1_1:23215803-23215822 Msa0014590:intron 45.0%
TCGATCCTACCGTTGAGATT+CGG + chr1_1:23215834-23215853 None:intergenic 45.0%
! TGCACATAGGATCTAGGGTA+TGG - chr1_1:23216071-23216090 Msa0014590:CDS 45.0%
! TCTAGCTTCTGGAGGAAAAG+AGG - chr1_1:23216221-23216240 Msa0014590:intron 45.0%
! CTAGCTTCTGGAGGAAAAGA+GGG - chr1_1:23216222-23216241 Msa0014590:intron 45.0%
! AAGAGGGAGATGAGAAGCAT+AGG - chr1_1:23216238-23216257 Msa0014590:intron 45.0%
AGTAAGCGTGTGGTTTCTTC+TGG + chr1_1:23217113-23217132 None:intergenic 45.0%
CTAAAGATGGAGCTAGAGAG+TGG - chr1_1:23217819-23217838 Msa0014590:intron 45.0%
CAAAGAAGAGATCACCAGCA+TGG - chr1_1:23217955-23217974 Msa0014590:CDS 45.0%
GCTGTAAACAATGCCTTGAC+AGG + chr1_1:23218161-23218180 None:intergenic 45.0%
!!! TTTTTTATTTTATTTATTGA+AGG - chr1_1:23214638-23214657 Msa0014590:intron 5.0%
!!! TTTTTATTTTATTTATTGAA+GGG - chr1_1:23214639-23214658 Msa0014590:intron 5.0%
GGTGGAATTGCACCAGATGA+AGG - chr1_1:23214685-23214704 Msa0014590:intron 50.0%
! GCTGATTTACACTGCTGAGC+TGG + chr1_1:23215386-23215405 None:intergenic 50.0%
TGTGGCATCATGGGCTTCTT+AGG - chr1_1:23215521-23215540 Msa0014590:intron 50.0%
CATGGGCTTCTTAGGCAACA+AGG - chr1_1:23215529-23215548 Msa0014590:intron 50.0%
TCCAACGACTGAGGTGAAGT+AGG - chr1_1:23215728-23215747 Msa0014590:intron 50.0%
TCCTACTTCACCTCAGTCGT+TGG + chr1_1:23215732-23215751 None:intergenic 50.0%
ACGGTCCAACCGAATCTCAA+CGG - chr1_1:23215822-23215841 Msa0014590:intron 50.0%
TCCAACCGAATCTCAACGGT+AGG - chr1_1:23215826-23215845 Msa0014590:intron 50.0%
! TCCTACCGTTGAGATTCGGT+TGG + chr1_1:23215830-23215849 None:intergenic 50.0%
ACCGACTGCACATAGGATCT+AGG - chr1_1:23216065-23216084 Msa0014590:CDS 50.0%
CCCTAGATCCTATGTGCAGT+CGG + chr1_1:23216069-23216088 None:intergenic 50.0%
CCGACTGCACATAGGATCTA+GGG - chr1_1:23216066-23216085 Msa0014590:CDS 50.0%
! GTGTGCAGTCATCTAGCTTC+TGG - chr1_1:23216210-23216229 Msa0014590:intron 50.0%
! TGCAGTCATCTAGCTTCTGG+AGG - chr1_1:23216213-23216232 Msa0014590:intron 50.0%
GACCGTCCGACTCAGGATTA+AGG + chr1_1:23215808-23215827 None:intergenic 55.0%
TGGTTGGACCGACTGCACAT+AGG - chr1_1:23216058-23216077 Msa0014590:CDS 55.0%
GCGGCCTTCAATCTAGCAGA+AGG + chr1_1:23216591-23216610 None:intergenic 55.0%
TCGGTTGGACCGTCCGACTC+AGG + chr1_1:23215815-23215834 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 23214039 23218319 23214039 ID=Msa0014590;Name=Msa0014590
chr1_1 mRNA 23214039 23218319 23214039 ID=Msa0014590-mRNA-1;Parent=Msa0014590;Name=Msa0014590-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.88|0.62|0.55|9|0|397
chr1_1 exon 23218311 23218319 23218311 ID=Msa0014590-mRNA-1:exon:8141;Parent=Msa0014590-mRNA-1
chr1_1 exon 23217849 23217991 23217849 ID=Msa0014590-mRNA-1:exon:8140;Parent=Msa0014590-mRNA-1
chr1_1 exon 23217591 23217698 23217591 ID=Msa0014590-mRNA-1:exon:8139;Parent=Msa0014590-mRNA-1
chr1_1 exon 23216965 23217165 23216965 ID=Msa0014590-mRNA-1:exon:8138;Parent=Msa0014590-mRNA-1
chr1_1 exon 23216808 23216925 23216808 ID=Msa0014590-mRNA-1:exon:8137;Parent=Msa0014590-mRNA-1
chr1_1 exon 23216012 23216196 23216012 ID=Msa0014590-mRNA-1:exon:8136;Parent=Msa0014590-mRNA-1
chr1_1 exon 23215183 23215291 23215183 ID=Msa0014590-mRNA-1:exon:8135;Parent=Msa0014590-mRNA-1
chr1_1 exon 23214463 23214539 23214463 ID=Msa0014590-mRNA-1:exon:8134;Parent=Msa0014590-mRNA-1
chr1_1 exon 23214039 23214282 23214039 ID=Msa0014590-mRNA-1:exon:8133;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23218311 23218319 23218311 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23217849 23217991 23217849 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23217591 23217698 23217591 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23216965 23217165 23216965 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23216808 23216925 23216808 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23216012 23216196 23216012 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23215183 23215291 23215183 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23214463 23214539 23214463 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
chr1_1 CDS 23214039 23214282 23214039 ID=Msa0014590-mRNA-1:cds;Parent=Msa0014590-mRNA-1
Gene Sequence

>Msa0014590

ATGTCAAAGATACTAAACAGGAGACTTGGAAGCAGAAATTTCATAGCAGATTATCCAAGTTATACAGATCCTTTATTGTCTACCAATAGTGATGATCAATTATCTCTAAGCACCAAATCCATTAATGATCATAGTGATCCACAAAAGTACAAGGTTTTTGTTAGTACATGGAACATAGGTGGAATTGCACCAGATGAAGGGTTGAATATTGAGGATTTGTTAGAGACATGCAGCAAGTCCTTTGATATCTATGTATTTGGGTTTCAAGAAATTGTGCCACTAAATGCATCAAATGTATTGGGATCAGAAGATAGTAAGATTTCAACAAAATGGAATTCTTTAATTAGAAATGCTTTGAACAAGAGGACACATCACTATTGTTGCAAAGATATTGAAAAGGATGATGATAATATAGAGCAAGATTTGAAGAATATTTGTCAAGGAAATATTCCAGCTCAGCACAAGCAAATGGTTGGTATTTTGATATCTGTGTGGGTTAGAAGTGACCTTAGTCCTTTCATTAGACATCCATGTGTCTCATGTGTTGGATGTGGCATCATGGGCTTCTTAGGCAACAAGGGTTCTGTATCTGTGAGATTTCTATTACATGAAACAAGCTTCTGCTTTGTGTGCAGTCATCTAGCTTCTGGAGGAAAAGAGGGAGATGAGAAGCATAGGAATTCTAATGTTGCTGAAATATTTTCTAGGACAAATTTTCCTAAAGGCACAAGTTTGAATTTACCAAGAAAGATTCTTGATCATGATCATGTAATATTGCTTGGAGATTTAAATTACAGAATATCTCTTCCAGAAGAAACCACACGCTTACTTGTTGAAAAAAGAGACTGGGATTCCCTATTAGAAAATGATCAGCTAAAGATGGAGCTAGAGAGTGGACAAATGTTAAGAGGTTGGCATGAAGGAGCAATTAAATTTGCTCCAACCTACAAGTGTGACAGAGTTATATGGTTAGGCAATGGATTAAAGCAAACTGAGTATGCTAGAAGTGAATCAAAATTATCAGATCATAGACCTGTCAAGGCATTGTTTACAGCAGAAGTCAAGGTTTCATCAGCATTGAAAAGCTTCCCTAGCATGTTTCTTTCAGAGAGATTTGAACAAATTAAAAATGTCTTCGAAATTTCCCCTACTGATGAGTTTGTATGTAAAAAACAATCAAGTTTCCGGTTGTAA

Protein sequence

>Msa0014590

MSKILNRRLGSRNFIADYPSYTDPLLSTNSDDQLSLSTKSINDHSDPQKYKVFVSTWNIGGIAPDEGLNIEDLLETCSKSFDIYVFGFQEIVPLNASNVLGSEDSKISTKWNSLIRNALNKRTHHYCCKDIEKDDDNIEQDLKNICQGNIPAQHKQMVGILISVWVRSDLSPFIRHPCVSCVGCGIMGFLGNKGSVSVRFLLHETSFCFVCSHLASGGKEGDEKHRNSNVAEIFSRTNFPKGTSLNLPRKILDHDHVILLGDLNYRISLPEETTRLLVEKRDWDSLLENDQLKMELESGQMLRGWHEGAIKFAPTYKCDRVIWLGNGLKQTEYARSESKLSDHRPVKALFTAEVKVSSALKSFPSMFLSERFEQIKNVFEISPTDEFVCKKQSSFRL*