AlfalfaGEDB | Msa0207640

M. sativa cultivar zhongmu-4 / Msa0207640

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207640	XP_013463930.1	93.363	452	9	2	1	431	1	452	0.0	855

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207640	sp\|Q94C25\|Y5005_ARATH	60.945	402	138	4	1	385	1	400	9.01e-161	464

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207640	A0A072VIJ4	93.363	452	9	2	1	431	1	452	0.0	855

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007570	Msa0207640	-0.801123	1.044469e-48	-8.615850e-47
Msa0010150	Msa0207640	0.886017	4.930001e-72	-8.615850e-47
Msa0011010	Msa0207640	0.830595	2.688237e-55	-8.615850e-47
Msa0011040	Msa0207640	0.831589	1.532048e-55	-8.615850e-47
Msa0011060	Msa0207640	-0.805810	1.115304e-49	-8.615850e-47
Msa0011100	Msa0207640	-0.804684	1.919470e-49	-8.615850e-47
Msa0014590	Msa0207640	0.859070	5.332923e-63	-8.615850e-47
Msa0015070	Msa0207640	0.801931	7.133914e-49	-8.615850e-47
Msa0017710	Msa0207640	0.824777	6.714250e-54	-8.615850e-47
Msa0021240	Msa0207640	-0.806740	7.104055e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207640	MtrunA17_Chr2g0306811	93.363	452	9	2	1	431	1	452	0.0	855
Msa0207640	MtrunA17_Chr4g0063251	69.180	451	113	4	1	431	1	445	0.0	621
Msa0207640	MtrunA17_Chr3g0137741	44.444	351	165	7	51	388	444	777	6.83e-97	308
Msa0207640	MtrunA17_Chr2g0318171	45.373	335	162	6	56	383	442	762	1.79e-94	301
Msa0207640	MtrunA17_Chr1g0149381	44.886	352	166	7	44	383	446	781	4.29e-94	301
Msa0207640	MtrunA17_Chr2g0314611	44.543	339	166	6	53	383	442	766	2.08e-93	298
Msa0207640	MtrunA17_Chr1g0202331	42.655	354	184	7	41	389	483	822	2.23e-91	294
Msa0207640	MtrunA17_Chr2g0333091	42.614	352	177	6	42	383	436	772	7.80e-89	286
Msa0207640	MtrunA17_Chr2g0323301	44.282	341	171	6	59	398	466	788	1.24e-88	286
Msa0207640	MtrunA17_Chr6g0467301	41.039	385	194	11	11	389	425	782	1.85e-87	283

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207640	AT5G20050.1	60.945	402	138	4	1	385	1	400	9.15e-162	464
Msa0207640	AT4G32300.1	43.188	389	185	9	57	430	452	819	5.41e-99	314
Msa0207640	AT5G24080.3	43.909	353	179	7	41	389	354	691	2.77e-91	292
Msa0207640	AT5G24080.1	43.909	353	179	7	41	389	354	691	2.77e-91	292
Msa0207640	AT5G24080.2	43.909	353	179	7	41	389	481	818	1.46e-90	293
Msa0207640	AT1G34300.1	44.409	313	159	5	71	382	467	765	6.68e-85	277
Msa0207640	AT2G19130.1	44.985	329	167	5	70	397	475	790	7.28e-85	276
Msa0207640	AT4G00340.2	47.351	302	143	7	78	375	451	740	1.43e-84	275
Msa0207640	AT4G00340.1	47.351	302	143	7	78	375	472	761	1.72e-84	275
Msa0207640	AT5G35370.1	42.687	335	164	6	73	393	500	820	1.03e-77	258

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Find 84 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGTATATAGTTA+CGG	0.435657	2_1:-40278346	Msa0207640:CDS
AAACAAAACCAAATACTGCA+AGG	0.630788	2_1:+40279082	None:intergenic
AAACTGATGTATATAGTTAC+GGG	0.439882	2_1:-40278345	Msa0207640:CDS
AAAGCCAGAAAATATTCTCT+TGG	0.452095	2_1:-40278509	Msa0207640:CDS
AACAGTAGTAGCAAAAGAGT+AGG	0.608755	2_1:+40277913	None:intergenic
AAGAGGAACAAGAGGTTATA+TGG	0.381755	2_1:-40278404	Msa0207640:CDS
AAGGCTTTCTTCCTCATCTG+TGG	0.571900	2_1:-40279123	Msa0207640:CDS
AATAAGTGATTGAAATCCAT+CGG	0.546856	2_1:+40278912	None:intergenic
AATGTGGTGGTGTTGATGAG+AGG	0.635793	2_1:-40278165	Msa0207640:CDS
AATTCTCAATGATGGAACTT+CGG	0.564790	2_1:-40278857	Msa0207640:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAACCAAATACTGCA+AGG	+	chr2_1:40278035-40278054	None:intergenic	30.0%
AGTTTCTTAAGAAAAGTTGC+AGG	-	chr2_1:40278138-40278157	Msa0207640:CDS	30.0%
GTTTCTTAAGAAAAGTTGCA+GGG	-	chr2_1:40278139-40278158	Msa0207640:CDS	30.0%
TTTCTTAAGAAAAGTTGCAG+GGG	-	chr2_1:40278140-40278159	Msa0207640:CDS	30.0%
TCATTGTATCTGAACTATGT+TGG	+	chr2_1:40278168-40278187	None:intergenic	30.0%
TTTCAATCACTTATTGGAAG+AGG	-	chr2_1:40278210-40278229	Msa0207640:CDS	30.0%
TTCAAAGGAATTCTCAATGA+TGG	-	chr2_1:40278249-40278268	Msa0207640:CDS	30.0%
CAAATGGATCATTAGATTGT+TGG	-	chr2_1:40278436-40278455	Msa0207640:CDS	30.0%
AAAGCCAGAAAATATTCTCT+TGG	-	chr2_1:40278605-40278624	Msa0207640:CDS	30.0%
GTGTTTAGTTGAAGATGAAA+AGG	-	chr2_1:40278830-40278849	Msa0207640:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	40277898	40279238	40277898	ID=Msa0207640;Name=Msa0207640
chr2_1	mRNA	40277898	40279238	40277898	ID=Msa0207640-mRNA-1;Parent=Msa0207640;Name=Msa0207640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|431
chr2_1	exon	40279003	40279238	40279003	ID=Msa0207640-mRNA-1:exon:12466;Parent=Msa0207640-mRNA-1
chr2_1	exon	40277898	40278957	40277898	ID=Msa0207640-mRNA-1:exon:12465;Parent=Msa0207640-mRNA-1
chr2_1	CDS	40279003	40279238	40279003	ID=Msa0207640-mRNA-1:cds;Parent=Msa0207640-mRNA-1
chr2_1	CDS	40277898	40278957	40277898	ID=Msa0207640-mRNA-1:cds;Parent=Msa0207640-mRNA-1

Gene Sequence

>Msa0207640

ATGGAAGATAGGAGAGTGAATATAATTGCTTCTATATCAGTGGTAACACTGATTATCATCATAATCATTGCTCGTGTCTTGTTCAAGCTGTCAAAGGCTTTCTTCCTCATCTGTGGCGCTGGCGTTGCCGTGATCCTTGCAGTATTTGGTTTTGTTTTTCTCAGCTTAATCTACAAACGCAGAAGGAGAATATTGGAATCACAGTTGAAATCAGAAGGTCAAGAGATTCGAATAGAATACAATGAGCTTGAGGAAGCAACCGATGGATTTCAATCACTTATTGGAAGAGGTTCTTCGGCTTCGGTTTTCAAAGGAATTCTCAATGATGGAACTTCGGTTGCTGTGAAAAGAATTGATGCTGAAGAAAGAGGAGCAAGAGAATTTAAATCAGAAGTTGCAGCTATAGCTAATGTTCATCATGTGAATCTTGTGAGACTTTTTGGGTATTGTAATTCTTCTTCTGCTCCTAGGTACCTTGTTTATGATTATATATCAAATGGATCATTAGATTGTTGGATTTTCCCGAAAAGGGATTCGCAAAGGCGTCCACGTCCTGGTGGATGCTTGTCGTGGAACTTGAGGTATAAAGTTGCAATTGACGTTGCTAAAGGACTTGCATATCTTCACCACGATTGCAGATCAAGGATCTTACATCTTGATATAAAGCCAGAAAATATTCTCTTGGATGAGACTTTTAGAGCACTTGTTTCGGATTTCGGTCTTGCAAAGCTAACTGGTAAAGACGAAAGTCAAGCGGTGTCTACGATAAGAGGAACAAGAGGTTATATGGCACCTGAATGGCTTTTAGAAAAGGGTATTTCAGATAAAACTGATGTATATAGTTACGGGATGGTTTTATTAGAAATTGTTGGAGGAAGAAAAAATGTGTGTTTAGTTGAAGATGAAAAGGACAAGTCAAAAAGGAAATGGCAATATTTTCCAAAGATTGTAAATGAGAAAGTGAAACAAGGGAAAATCATGGAAATTGTTGATCATAGGTTAATGGAATGTGGTGGTGTTGATGAGAGGGAGGTGGTTAAATTGGTTTATGTTGCTTTATGGTGTGTGCAAGAAAAGGCAAGGTTGAGGCCCAGTATGGGTAGAGTGGTTGATATGCTTGAAGGGCGTGTGAGAGTGGATGAGCCACCAGGTACAAGAATGATTCTTGTTGATTTTCTAAGTGTTGATGATGATAACATGCCAAGGTTGGACACTATGTCTAGTCAAGGAACACAAAGCAATGTGGAATGTAATTCTACCTACTCTTTTGCTACTACTGTTTTCTCTGGAAGATAG

Protein sequence

>Msa0207640

MEDRRVNIIASISVVTLIIIIIIARVLFKLSKAFFLICGAGVAVILAVFGFVFLSLIYKRRRRILESQLKSEGQEIRIEYNELEEATDGFQSLIGRGSSASVFKGILNDGTSVAVKRIDAEERGAREFKSEVAAIANVHHVNLVRLFGYCNSSSAPRYLVYDYISNGSLDCWIFPKRDSQRRPRPGGCLSWNLRYKVAIDVAKGLAYLHHDCRSRILHLDIKPENILLDETFRALVSDFGLAKLTGKDESQAVSTIRGTRGYMAPEWLLEKGISDKTDVYSYGMVLLEIVGGRKNVCLVEDEKDKSKRKWQYFPKIVNEKVKQGKIMEIVDHRLMECGGVDEREVVKLVYVALWCVQEKARLRPSMGRVVDMLEGRVRVDEPPGTRMILVDFLSVDDDNMPRLDTMSSQGTQSNVECNSTYSFATTVFSGR*