Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003400 | XP_013466147.1 | 98.125 | 160 | 3 | 0 | 1 | 160 | 1 | 160 | 2.07e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003400 | sp|C0Z2L5|BZP44_ARATH | 52.727 | 165 | 68 | 6 | 2 | 158 | 9 | 171 | 7.54e-47 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0003400 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0003400 | 0.818254 | 2.157885e-52 | -8.615850e-47 |
| Msa0002710 | Msa0003400 | 0.825772 | 3.905795e-54 | -8.615850e-47 |
| Msa0003400 | Msa0005270 | 0.819706 | 1.009051e-52 | -8.615850e-47 |
| Msa0003400 | Msa0006110 | 0.812867 | 3.416282e-51 | -8.615850e-47 |
| Msa0003400 | Msa0022550 | 0.813611 | 2.344739e-51 | -8.615850e-47 |
| Msa0003400 | Msa0030160 | 0.808657 | 2.781564e-50 | -8.615850e-47 |
| Msa0003400 | Msa0031180 | 0.803088 | 4.119557e-49 | -8.615850e-47 |
| Msa0003400 | Msa0037160 | 0.826551 | 2.550187e-54 | -8.615850e-47 |
| Msa0003400 | Msa0042550 | 0.827256 | 1.729544e-54 | -8.615850e-47 |
| Msa0003400 | Msa0043500 | 0.809261 | 2.064962e-50 | -8.615850e-47 |
| Msa0003400 | Msa0050820 | 0.973785 | 5.077371e-137 | -8.615850e-47 |
| Msa0003400 | Msa0054820 | 0.858874 | 6.105978e-63 | -8.615850e-47 |
| Msa0003400 | Msa0056450 | 0.829513 | 4.936200e-55 | -8.615850e-47 |
| Msa0003400 | Msa0059890 | 0.807268 | 5.492325e-50 | -8.615850e-47 |
| Msa0003400 | Msa0079110 | 0.801372 | 9.286884e-49 | -8.615850e-47 |
| Msa0003400 | Msa0080830 | 0.829316 | 5.510343e-55 | -8.615850e-47 |
| Msa0003400 | Msa0081650 | 0.806504 | 7.964939e-50 | -8.615850e-47 |
| Msa0003400 | Msa0092410 | 0.807464 | 4.990042e-50 | -8.615850e-47 |
| Msa0003400 | Msa0100160 | 0.853452 | 2.366934e-61 | -8.615850e-47 |
| Msa0003400 | Msa0103250 | 0.813094 | 3.045367e-51 | -8.615850e-47 |
| Msa0003400 | Msa0104670 | 0.801925 | 7.154741e-49 | -8.615850e-47 |
| Msa0003400 | Msa0104800 | 0.815941 | 7.141894e-52 | -8.615850e-47 |
| Msa0003400 | Msa0106620 | 0.833672 | 4.662729e-56 | -8.615850e-47 |
| Msa0003400 | Msa0106710 | 0.822407 | 2.408724e-53 | -8.615850e-47 |
| Msa0003400 | Msa0108390 | 0.816126 | 6.493750e-52 | -8.615850e-47 |
| Msa0003400 | Msa0108410 | 0.809788 | 1.591510e-50 | -8.615850e-47 |
| Msa0003400 | Msa0116790 | 0.810128 | 1.344389e-50 | -8.615850e-47 |
| Msa0003400 | Msa0125650 | 0.809814 | 1.570624e-50 | -8.615850e-47 |
| Msa0003400 | Msa0138020 | 0.800939 | 1.139245e-48 | -8.615850e-47 |
| Msa0003400 | Msa0141400 | 0.811382 | 7.198120e-51 | -8.615850e-47 |
| Msa0003400 | Msa0143850 | 0.819098 | 1.388053e-52 | -8.615850e-47 |
| Msa0003400 | Msa0146540 | 0.974834 | 7.381286e-139 | -8.615850e-47 |
| Msa0003400 | Msa0149300 | 0.802205 | 6.264171e-49 | -8.615850e-47 |
| Msa0003400 | Msa0164080 | 0.801765 | 7.716688e-49 | -8.615850e-47 |
| Msa0003400 | Msa0168870 | 0.819660 | 1.033803e-52 | -8.615850e-47 |
| Msa0003400 | Msa0173390 | 0.823963 | 1.043878e-53 | -8.615850e-47 |
| Msa0003400 | Msa0176050 | 0.812493 | 4.123092e-51 | -8.615850e-47 |
| Msa0003400 | Msa0177210 | 0.806660 | 7.383457e-50 | -8.615850e-47 |
| Msa0003400 | Msa0178510 | 0.828327 | 9.561182e-55 | -8.615850e-47 |
| Msa0003400 | Msa0181230 | 0.801678 | 8.039350e-49 | -8.615850e-47 |
| Msa0003400 | Msa0187030 | 0.846310 | 2.354292e-59 | -8.615850e-47 |
| Msa0003400 | Msa0187830 | 0.831763 | 1.388546e-55 | -8.615850e-47 |
| Msa0003400 | Msa0205010 | 0.849054 | 4.135040e-60 | -8.615850e-47 |
| Msa0003400 | Msa0212040 | 0.803732 | 3.028641e-49 | -8.615850e-47 |
| Msa0003400 | Msa0218810 | 0.800236 | 1.584499e-48 | -8.615850e-47 |
| Msa0003400 | Msa0225220 | 0.849511 | 3.085724e-60 | -8.615850e-47 |
| Msa0003400 | Msa0225640 | 0.817018 | 4.099213e-52 | -8.615850e-47 |
| Msa0003400 | Msa0237210 | 0.802480 | 5.500680e-49 | -8.615850e-47 |
| Msa0003400 | Msa0241140 | 0.819219 | 1.302585e-52 | -8.615850e-47 |
| Msa0003400 | Msa0266350 | 0.804865 | 1.759013e-49 | -8.615850e-47 |
| Msa0003400 | Msa0269560 | 0.811000 | 8.714029e-51 | -8.615850e-47 |
| Msa0003400 | Msa0315690 | 0.806441 | 8.215541e-50 | -8.615850e-47 |
| Msa0003400 | Msa0318720 | 0.809931 | 1.482670e-50 | -8.615850e-47 |
| Msa0003400 | Msa0324240 | 0.800819 | 1.205377e-48 | -8.615850e-47 |
| Msa0003400 | Msa0339910 | 0.800646 | 1.307086e-48 | -8.615850e-47 |
| Msa0003400 | Msa0341690 | 0.802637 | 5.104947e-49 | -8.615850e-47 |
| Msa0003400 | Msa0342010 | 0.856037 | 4.217961e-62 | -8.615850e-47 |
| Msa0003400 | Msa0346700 | 0.807466 | 4.985711e-50 | -8.615850e-47 |
| Msa0003400 | Msa0358890 | 0.824138 | 9.491968e-54 | -8.615850e-47 |
| Msa0003400 | Msa0360210 | 0.808090 | 3.674690e-50 | -8.615850e-47 |
| Msa0003400 | Msa0363790 | 0.809032 | 2.311507e-50 | -8.615850e-47 |
| Msa0003400 | Msa0363810 | 0.814070 | 1.857438e-51 | -8.615850e-47 |
| Msa0003400 | Msa0367870 | 0.807444 | 5.041030e-50 | -8.615850e-47 |
| Msa0003400 | Msa0378970 | 0.843531 | 1.322951e-58 | -8.615850e-47 |
| Msa0003400 | Msa0389910 | 0.865586 | 5.305009e-65 | -8.615850e-47 |
| Msa0003400 | Msa0403640 | 0.805441 | 1.332890e-49 | -8.615850e-47 |
| Msa0003400 | Msa0403660 | 0.812311 | 4.518092e-51 | -8.615850e-47 |
| Msa0003400 | Msa0406770 | 0.808688 | 2.739372e-50 | -8.615850e-47 |
| Msa0003400 | Msa0411410 | 0.824880 | 6.351063e-54 | -8.615850e-47 |
| Msa0003400 | Msa0428580 | 0.815392 | 9.467312e-52 | -8.615850e-47 |
| Msa0003400 | Msa0430640 | 0.806205 | 9.211500e-50 | -8.615850e-47 |
| Msa0003400 | Msa0443000 | 0.800984 | 1.115222e-48 | -8.615850e-47 |
| Msa0003400 | Msa0468410 | 0.817823 | 2.700656e-52 | -8.615850e-47 |
| Msa0003400 | Msa0468800 | 0.818595 | 1.805556e-52 | -8.615850e-47 |
| Msa0003400 | Msa0471420 | 0.815188 | 1.050921e-51 | -8.615850e-47 |
| Msa0003400 | Msa0473330 | 0.801031 | 1.090880e-48 | -8.615850e-47 |
| Msa0003400 | Msa0474940 | 0.830929 | 2.225764e-55 | -8.615850e-47 |
| Msa0003400 | Msa0479200 | 0.800925 | 1.146375e-48 | -8.615850e-47 |
| Msa0003400 | Msa0480780 | 0.820595 | 6.313371e-53 | -8.615850e-47 |
| Msa0003400 | Msa0488790 | 0.829403 | 5.250089e-55 | -8.615850e-47 |
| Msa0003400 | Msa0518030 | 0.801894 | 7.258973e-49 | -8.615850e-47 |
| Msa0003400 | Msa0518440 | 0.812219 | 4.733892e-51 | -8.615850e-47 |
| Msa0003400 | Msa0523050 | 0.803056 | 4.181969e-49 | -8.615850e-47 |
| Msa0003400 | Msa0526070 | -0.806849 | 6.735437e-50 | -8.615850e-47 |
| Msa0003400 | Msa0532960 | 0.813760 | 2.174009e-51 | -8.615850e-47 |
| Msa0003400 | Msa0532980 | 0.815181 | 1.054662e-51 | -8.615850e-47 |
| Msa0003400 | Msa0544660 | 0.839539 | 1.492005e-57 | -8.615850e-47 |
| Msa0003400 | Msa0553240 | 0.802323 | 5.924208e-49 | -8.615850e-47 |
| Msa0003400 | Msa0559500 | 0.810308 | 1.229693e-50 | -8.615850e-47 |
| Msa0003400 | Msa0562570 | 0.823831 | 1.120416e-53 | -8.615850e-47 |
| Msa0003400 | Msa0568680 | 0.806886 | 6.616405e-50 | -8.615850e-47 |
| Msa0003400 | Msa0574390 | 0.845320 | 4.371222e-59 | -8.615850e-47 |
| Msa0003400 | Msa0576680 | 0.833709 | 4.563845e-56 | -8.615850e-47 |
| Msa0003400 | Msa0579660 | 0.824182 | 9.269721e-54 | -8.615850e-47 |
| Msa0003400 | Msa0588090 | 0.821547 | 3.809734e-53 | -8.615850e-47 |
| Msa0003400 | Msa0598160 | 0.815428 | 9.291345e-52 | -8.615850e-47 |
| Msa0003400 | Msa0601950 | 0.821331 | 4.273534e-53 | -8.615850e-47 |
| Msa0003400 | Msa0613710 | 0.803936 | 2.747901e-49 | -8.615850e-47 |
| Msa0003400 | Msa0622170 | -0.802309 | 5.964076e-49 | -8.615850e-47 |
| Msa0003400 | Msa0637900 | 0.820937 | 5.268812e-53 | -8.615850e-47 |
| Msa0003400 | Msa0652690 | 0.819960 | 8.828372e-53 | -8.615850e-47 |
| Msa0003400 | Msa0656000 | 0.813514 | 2.462535e-51 | -8.615850e-47 |
| Msa0003400 | Msa0658590 | 0.806256 | 8.986351e-50 | -8.615850e-47 |
| Msa0003400 | Msa0661320 | 0.833852 | 4.202349e-56 | -8.615850e-47 |
| Msa0003400 | Msa0667770 | 0.822964 | 1.786622e-53 | -8.615850e-47 |
| Msa0003400 | Msa0667790 | 0.817752 | 2.801273e-52 | -8.615850e-47 |
| Msa0003400 | Msa0680660 | 0.822339 | 2.497278e-53 | -8.615850e-47 |
| Msa0003400 | Msa0698290 | 0.803542 | 3.317517e-49 | -8.615850e-47 |
| Msa0003400 | Msa0698640 | 0.806313 | 8.740344e-50 | -8.615850e-47 |
| Msa0003400 | Msa0705190 | 0.804819 | 1.798783e-49 | -8.615850e-47 |
| Msa0003400 | Msa0710270 | 0.811610 | 6.424156e-51 | -8.615850e-47 |
| Msa0003400 | Msa0711430 | 0.811123 | 8.195750e-51 | -8.615850e-47 |
| Msa0003400 | Msa0712560 | 0.817431 | 3.308866e-52 | -8.615850e-47 |
| Msa0003400 | Msa0721280 | 0.827659 | 1.384291e-54 | -8.615850e-47 |
| Msa0003400 | Msa0744100 | 0.805195 | 1.500780e-49 | -8.615850e-47 |
| Msa0003400 | Msa0751260 | 0.820625 | 6.213153e-53 | -8.615850e-47 |
| Msa0003400 | Msa0753370 | 0.800992 | 1.111142e-48 | -8.615850e-47 |
| Msa0003400 | Msa0756530 | 0.805907 | 1.064069e-49 | -8.615850e-47 |
| Msa0003400 | Msa0762970 | 0.806603 | 7.592196e-50 | -8.615850e-47 |
| Msa0003400 | Msa0763890 | 0.809144 | 2.187526e-50 | -8.615850e-47 |
| Msa0003400 | Msa0763920 | 0.811064 | 8.438436e-51 | -8.615850e-47 |
| Msa0003400 | Msa0773590 | 0.802340 | 5.877735e-49 | -8.615850e-47 |
| Msa0003400 | Msa0791090 | 0.803945 | 2.735471e-49 | -8.615850e-47 |
| Msa0003400 | Msa0795070 | 0.841625 | 4.241029e-58 | -8.615850e-47 |
| Msa0003400 | Msa0795360 | 0.802650 | 5.074007e-49 | -8.615850e-47 |
| Msa0003400 | Msa0797770 | 0.807346 | 5.286275e-50 | -8.615850e-47 |
| Msa0003400 | Msa0800700 | 0.811765 | 5.945206e-51 | -8.615850e-47 |
| Msa0003400 | Msa0811040 | 0.802923 | 4.456077e-49 | -8.615850e-47 |
| Msa0003400 | Msa0814710 | 0.829894 | 3.986198e-55 | -8.615850e-47 |
| Msa0003400 | Msa0817460 | 0.813916 | 2.009257e-51 | -8.615850e-47 |
| Msa0003400 | Msa0821780 | 0.805937 | 1.048916e-49 | -8.615850e-47 |
| Msa0003400 | Msa0830510 | 0.805191 | 1.503856e-49 | -8.615850e-47 |
| Msa0003400 | Msa0832600 | 0.803006 | 4.282202e-49 | -8.615850e-47 |
| Msa0003400 | Msa0835230 | 0.802728 | 4.887599e-49 | -8.615850e-47 |
| Msa0003400 | Msa0848750 | 0.806082 | 9.774251e-50 | -8.615850e-47 |
| Msa0003400 | Msa0853950 | 0.802723 | 4.900820e-49 | -8.615850e-47 |
| Msa0003400 | Msa0866520 | 0.803485 | 3.408689e-49 | -8.615850e-47 |
| Msa0003400 | Msa0868160 | 0.836230 | 1.056914e-56 | -8.615850e-47 |
| Msa0003400 | Msa0873860 | 0.819156 | 1.346875e-52 | -8.615850e-47 |
| Msa0003400 | Msa0894710 | 0.805683 | 1.185628e-49 | -8.615850e-47 |
| Msa0003400 | Msa0898750 | 0.816966 | 4.211578e-52 | -8.615850e-47 |
| Msa0003400 | Msa0900620 | 0.813252 | 2.812332e-51 | -8.615850e-47 |
| Msa0003400 | Msa0922980 | 0.802446 | 5.588582e-49 | -8.615850e-47 |
| Msa0003400 | Msa0926470 | 0.822808 | 1.942560e-53 | -8.615850e-47 |
| Msa0003400 | Msa0928130 | 0.823927 | 1.064069e-53 | -8.615850e-47 |
| Msa0003400 | Msa0936390 | 0.827950 | 1.178288e-54 | -8.615850e-47 |
| Msa0003400 | Msa0939000 | 0.803917 | 2.772928e-49 | -8.615850e-47 |
| Msa0003400 | Msa0945240 | 0.822317 | 2.526685e-53 | -8.615850e-47 |
| Msa0003400 | Msa0964310 | 0.802555 | 5.307081e-49 | -8.615850e-47 |
| Msa0003400 | Msa0975940 | 0.815030 | 1.139271e-51 | -8.615850e-47 |
| Msa0003400 | Msa0980880 | 0.803916 | 2.773771e-49 | -8.615850e-47 |
| Msa0003400 | Msa0986510 | 0.811785 | 5.885029e-51 | -8.615850e-47 |
| Msa0003400 | Msa1001390 | 0.809607 | 1.740762e-50 | -8.615850e-47 |
| Msa0003400 | Msa1022820 | 0.806970 | 6.350695e-50 | -8.615850e-47 |
| Msa0003400 | Msa1027360 | 0.801569 | 8.462389e-49 | -8.615850e-47 |
| Msa0003400 | Msa1031930 | 0.828098 | 1.085962e-54 | -8.615850e-47 |
| Msa0003400 | Msa1034500 | 0.854254 | 1.391336e-61 | -8.615850e-47 |
| Msa0003400 | Msa1038080 | 0.833711 | 4.558873e-56 | -8.615850e-47 |
| Msa0003400 | Msa1039710 | -0.813028 | 3.148623e-51 | -8.615850e-47 |
| Msa0003400 | Msa1063420 | 0.813747 | 2.188169e-51 | -8.615850e-47 |
| Msa0003400 | Msa1071770 | 0.805757 | 1.144305e-49 | -8.615850e-47 |
| Msa0003400 | Msa1080490 | 0.807097 | 5.969566e-50 | -8.615850e-47 |
| Msa0003400 | Msa1080640 | 0.806706 | 7.221995e-50 | -8.615850e-47 |
| Msa0003400 | Msa1088410 | 0.818574 | 1.825672e-52 | -8.615850e-47 |
| Msa0003400 | Msa1094190 | 0.818362 | 2.039651e-52 | -8.615850e-47 |
| Msa0003400 | Msa1098270 | 0.800309 | 1.530908e-48 | -8.615850e-47 |
| Msa0003400 | Msa1126240 | 0.814190 | 1.748106e-51 | -8.615850e-47 |
| Msa0003400 | Msa1126450 | 0.807189 | 5.708032e-50 | -8.615850e-47 |
| Msa0003400 | Msa1129690 | 0.806595 | 7.622054e-50 | -8.615850e-47 |
| Msa0003400 | Msa1130530 | 0.804355 | 2.247708e-49 | -8.615850e-47 |
| Msa0003400 | Msa1145810 | 0.830197 | 3.363357e-55 | -8.615850e-47 |
| Msa0003400 | Msa1158830 | 0.809065 | 2.275129e-50 | -8.615850e-47 |
| Msa0003400 | Msa1207310 | 0.805649 | 1.205387e-49 | -8.615850e-47 |
| Msa0003400 | Msa1226470 | 0.800628 | 1.318221e-48 | -8.615850e-47 |
| Msa0003400 | Msa1227150 | 0.976512 | 5.734211e-142 | -8.615850e-47 |
| Msa0003400 | Msa1243870 | 0.818966 | 1.487180e-52 | -8.615850e-47 |
| Msa0003400 | Msa1250290 | 0.803361 | 3.617254e-49 | -8.615850e-47 |
| Msa0003400 | Msa1262010 | 0.804581 | 2.016506e-49 | -8.615850e-47 |
| Msa0003400 | Msa1279420 | 0.802308 | 5.966226e-49 | -8.615850e-47 |
| Msa0003400 | Msa1284900 | 0.820202 | 7.770653e-53 | -8.615850e-47 |
| Msa0003400 | Msa1307560 | 0.806439 | 8.223102e-50 | -8.615850e-47 |
| Msa0003400 | Msa1320820 | 0.802935 | 4.429103e-49 | -8.615850e-47 |
| Msa0003400 | Msa1328640 | 0.813608 | 2.348423e-51 | -8.615850e-47 |
| Msa0003400 | Msa1341490 | 0.802185 | 6.324426e-49 | -8.615850e-47 |
| Msa0003400 | Msa1345810 | 0.825174 | 5.411783e-54 | -8.615850e-47 |
| Msa0003400 | Msa1349520 | 0.823905 | 1.076575e-53 | -8.615850e-47 |
| Msa0003400 | Msa1353470 | 0.807312 | 5.374904e-50 | -8.615850e-47 |
| Msa0003400 | Msa1357080 | 0.813091 | 3.049675e-51 | -8.615850e-47 |
| Msa0003400 | Msa1357890 | 0.824406 | 8.213930e-54 | -8.615850e-47 |
| Msa0003400 | Msa1358070 | 0.808621 | 2.830664e-50 | -8.615850e-47 |
| Msa0003400 | Msa1358240 | 0.811353 | 7.305722e-51 | -8.615850e-47 |
| Msa0003400 | Msa1359560 | 0.846028 | 2.808941e-59 | -8.615850e-47 |
| Msa0003400 | Msa1360980 | 0.812106 | 5.010457e-51 | -8.615850e-47 |
| Msa0003400 | Msa1368430 | 0.830441 | 2.931393e-55 | -8.615850e-47 |
| Msa0003400 | Msa1372150 | 0.828232 | 1.007761e-54 | -8.615850e-47 |
| Msa0003400 | Msa1383230 | 0.846993 | 1.532083e-59 | -8.615850e-47 |
| Msa0003400 | Msa1385000 | 0.800229 | 1.589807e-48 | -8.615850e-47 |
| Msa0003400 | Msa1394380 | 0.812041 | 5.175816e-51 | -8.615850e-47 |
| Msa0003400 | Msa1398090 | 0.825646 | 4.183781e-54 | -8.615850e-47 |
| Msa0003400 | Msa1407190 | 0.827010 | 1.981187e-54 | -8.615850e-47 |
| Msa0003400 | Msa1410420 | 0.821250 | 4.460825e-53 | -8.615850e-47 |
| Msa0003400 | Msa1412130 | 0.819013 | 1.451619e-52 | -8.615850e-47 |
| Msa0003400 | Msa1413610 | 0.810090 | 1.369904e-50 | -8.615850e-47 |
| Msa0003400 | Msa1424630 | 0.815021 | 1.144430e-51 | -8.615850e-47 |
| Msa0003400 | Msa1425260 | 0.821952 | 3.071643e-53 | -8.615850e-47 |
| Msa0003400 | Msa1426570 | 0.813285 | 2.765137e-51 | -8.615850e-47 |
| Msa0003400 | Msa1430550 | 0.835021 | 2.137835e-56 | -8.615850e-47 |
| Msa0003400 | Msa1432130 | 0.834327 | 3.195374e-56 | -8.615850e-47 |
| Msa0003400 | Msa1440740 | 0.803795 | 2.939407e-49 | -8.615850e-47 |
| Msa0003400 | Msa1446780 | 0.833815 | 4.293489e-56 | -8.615850e-47 |
| Msa0003400 | Msa1448560 | 0.814494 | 1.497239e-51 | -8.615850e-47 |
| Msa0003400 | Msa1454530 | 0.827826 | 1.262730e-54 | -8.615850e-47 |
| Msa0003400 | Msa1463900 | 0.839434 | 1.588398e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003400 | MtrunA17_Chr1g0155551 | 98.125 | 160 | 3 | 0 | 1 | 160 | 1 | 160 | 1.90e-115 | 323 |
| Msa0003400 | MtrunA17_Chr4g0035414 | 60.544 | 147 | 52 | 4 | 15 | 160 | 15 | 156 | 8.05e-55 | 170 |
| Msa0003400 | MtrunA17_Chr3g0144941 | 62.676 | 142 | 46 | 4 | 18 | 159 | 18 | 152 | 3.57e-48 | 153 |
| Msa0003400 | MtrunA17_Chr8g0378901 | 50.000 | 166 | 71 | 6 | 1 | 160 | 1 | 160 | 1.01e-42 | 139 |
| Msa0003400 | MtrunA17_Chr3g0141881 | 62.500 | 88 | 30 | 1 | 18 | 105 | 54 | 138 | 3.16e-32 | 112 |
| Msa0003400 | MtrunA17_Chr1g0194681 | 38.411 | 151 | 85 | 4 | 9 | 159 | 7 | 149 | 5.80e-24 | 91.3 |
| Msa0003400 | MtrunA17_Chr7g0225661 | 41.237 | 97 | 56 | 1 | 5 | 100 | 58 | 154 | 5.84e-17 | 74.3 |
| Msa0003400 | MtrunA17_Chr6g0456061 | 42.045 | 88 | 50 | 1 | 18 | 105 | 79 | 165 | 3.41e-16 | 72.4 |
| Msa0003400 | MtrunA17_Chr8g0341311 | 40.426 | 94 | 55 | 1 | 8 | 100 | 51 | 144 | 1.77e-15 | 70.1 |
| Msa0003400 | MtrunA17_Chr3g0139301 | 33.898 | 118 | 78 | 0 | 2 | 119 | 98 | 215 | 2.23e-15 | 71.6 |
| Msa0003400 | MtrunA17_Chr4g0054291 | 37.931 | 116 | 58 | 1 | 8 | 109 | 39 | 154 | 3.41e-15 | 68.9 |
| Msa0003400 | MtrunA17_Chr7g0220571 | 46.988 | 83 | 43 | 1 | 18 | 100 | 76 | 157 | 6.00e-15 | 68.9 |
| Msa0003400 | MtrunA17_Chr5g0400901 | 38.095 | 105 | 61 | 1 | 1 | 105 | 36 | 136 | 7.15e-13 | 62.8 |
| Msa0003400 | MtrunA17_Chr8g0369161 | 40.789 | 76 | 45 | 0 | 23 | 98 | 302 | 377 | 5.93e-12 | 62.4 |
| Msa0003400 | MtrunA17_Chr1g0152241 | 41.860 | 86 | 47 | 1 | 29 | 114 | 59 | 141 | 3.67e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003400 | AT1G75390.1 | 52.727 | 165 | 68 | 6 | 2 | 158 | 9 | 171 | 7.66e-48 | 153 |
| Msa0003400 | AT4G34590.1 | 56.618 | 136 | 57 | 1 | 27 | 160 | 24 | 159 | 5.45e-46 | 148 |
| Msa0003400 | AT2G18160.1 | 47.917 | 144 | 62 | 3 | 22 | 153 | 23 | 165 | 1.27e-35 | 122 |
| Msa0003400 | AT1G75390.2 | 62.887 | 97 | 32 | 3 | 2 | 94 | 9 | 105 | 2.48e-32 | 112 |
| Msa0003400 | AT3G62420.1 | 42.857 | 133 | 63 | 3 | 28 | 158 | 23 | 144 | 3.19e-25 | 94.7 |
| Msa0003400 | AT5G49450.1 | 38.519 | 135 | 71 | 5 | 27 | 154 | 13 | 142 | 6.27e-16 | 70.9 |
| Msa0003400 | AT5G38800.1 | 44.444 | 90 | 50 | 0 | 11 | 100 | 53 | 142 | 4.66e-15 | 68.9 |
| Msa0003400 | AT3G30530.1 | 45.946 | 74 | 40 | 0 | 27 | 100 | 78 | 151 | 1.15e-14 | 68.2 |
| Msa0003400 | AT2G04038.1 | 51.515 | 66 | 26 | 1 | 27 | 92 | 71 | 130 | 1.72e-14 | 67.4 |
| Msa0003400 | AT5G15830.1 | 34.545 | 110 | 72 | 0 | 27 | 136 | 71 | 180 | 2.40e-14 | 67.4 |
| Msa0003400 | AT1G13600.1 | 44.048 | 84 | 45 | 1 | 19 | 100 | 73 | 156 | 2.23e-13 | 65.1 |
| Msa0003400 | AT4G37730.1 | 43.750 | 80 | 37 | 2 | 17 | 88 | 176 | 255 | 1.44e-11 | 61.6 |
| Msa0003400 | AT1G68880.1 | 46.269 | 67 | 36 | 0 | 28 | 94 | 45 | 111 | 1.83e-11 | 58.9 |
| Msa0003400 | AT2G22850.1 | 47.561 | 82 | 32 | 2 | 28 | 109 | 127 | 197 | 4.88e-11 | 59.3 |
| Msa0003400 | AT2G22850.2 | 47.561 | 82 | 32 | 2 | 28 | 109 | 127 | 197 | 4.88e-11 | 59.3 |
| Msa0003400 | AT1G32150.1 | 44.304 | 79 | 40 | 2 | 18 | 92 | 281 | 359 | 6.43e-11 | 59.7 |
Find 23 sgRNAs with CRISPR-Local
Find 21 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAATCAACAACCAATTA+TGG | 0.294562 | 1_1:-5905351 | Msa0003400:CDS |
| AGGCAGAGAATTGTGTTCTA+AGG | 0.304006 | 1_1:-5905532 | Msa0003400:CDS |
| AACACCACAACAACTACTAA+TGG | 0.383416 | 1_1:-5905449 | Msa0003400:CDS |
| ATGTCTGCAGAGGCCATAAT+TGG | 0.394626 | 1_1:+5905338 | None:intergenic |
| GGAAGATTTGCAGCTTCAAA+TGG | 0.446632 | 1_1:-5905726 | Msa0003400:CDS |
| AAAGCAATCGAATCGCGAAT+CGG | 0.496834 | 1_1:-5905684 | Msa0003400:CDS |
| TATCCTATGGCCACATCTAG+TGG | 0.505899 | 1_1:-5905791 | None:intergenic |
| AACTCCATTAGTAGTTGTTG+TGG | 0.516849 | 1_1:+5905445 | None:intergenic |
| TCAACAAAATCTCAAAGCTA+TGG | 0.521179 | 1_1:-5905755 | Msa0003400:CDS |
| GGCAGAGAATTGTGTTCTAA+GGG | 0.540590 | 1_1:-5905531 | Msa0003400:CDS |
| TTCAAATGGATCAAAGAAAG+AGG | 0.542675 | 1_1:-5905712 | Msa0003400:CDS |
| TAGTTGTTGTGGTGTTGATG+AGG | 0.546016 | 1_1:+5905456 | None:intergenic |
| GCGAATCGGCAAGAAGATCA+AGG | 0.559935 | 1_1:-5905670 | Msa0003400:CDS |
| ACAACACTATCTTAAAATTG+AGG | 0.562515 | 1_1:-5905552 | Msa0003400:CDS |
| CGGCAAGAAGATCAAGGATG+AGG | 0.573196 | 1_1:-5905664 | Msa0003400:CDS |
| AAATGTGTGAACTTAATCAA+AGG | 0.582994 | 1_1:-5905505 | Msa0003400:CDS |
| ATCTCAAAGCTATGGCTCTG+AGG | 0.614327 | 1_1:-5905747 | Msa0003400:CDS |
| TTTCCACTAGATGTGGCCAT+AGG | 0.620229 | 1_1:+5905788 | None:intergenic |
| GATGAGGAAGCAGAAGCACA+TGG | 0.623986 | 1_1:-5905648 | Msa0003400:CDS |
| CCTCTGCAGACATGTTTATG+TGG | 0.636770 | 1_1:-5905328 | Msa0003400:CDS |
| ACTAGAGTTTCCACTAGATG+TGG | 0.653981 | 1_1:+5905781 | None:intergenic |
| CCACATAAACATGTCTGCAG+AGG | 0.669420 | 1_1:+5905328 | None:intergenic |
| AAAACAGTGAAATACTCACA+AGG | 0.723410 | 1_1:-5905589 | Msa0003400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACAACACTATCTTAAAATTG+AGG | - | chr1_1:5905558-5905577 | Msa0003400:CDS | 25.0% |
| ! | AAATGTGTGAACTTAATCAA+AGG | - | chr1_1:5905605-5905624 | Msa0003400:CDS | 25.0% |
| ! | TCTTAATCAACAACCAATTA+TGG | - | chr1_1:5905759-5905778 | Msa0003400:CDS | 25.0% |
| TCAACAAAATCTCAAAGCTA+TGG | - | chr1_1:5905355-5905374 | Msa0003400:CDS | 30.0% | |
| TTCAAATGGATCAAAGAAAG+AGG | - | chr1_1:5905398-5905417 | Msa0003400:CDS | 30.0% | |
| AAAACAGTGAAATACTCACA+AGG | - | chr1_1:5905521-5905540 | Msa0003400:CDS | 30.0% | |
| AACACCACAACAACTACTAA+TGG | - | chr1_1:5905661-5905680 | Msa0003400:CDS | 35.0% | |
| AACTCCATTAGTAGTTGTTG+TGG | + | chr1_1:5905668-5905687 | None:intergenic | 35.0% | |
| ACTAGAGTTTCCACTAGATG+TGG | + | chr1_1:5905332-5905351 | None:intergenic | 40.0% | |
| GGAAGATTTGCAGCTTCAAA+TGG | - | chr1_1:5905384-5905403 | Msa0003400:CDS | 40.0% | |
| AAAGCAATCGAATCGCGAAT+CGG | - | chr1_1:5905426-5905445 | Msa0003400:CDS | 40.0% | |
| AGGCAGAGAATTGTGTTCTA+AGG | - | chr1_1:5905578-5905597 | Msa0003400:CDS | 40.0% | |
| GGCAGAGAATTGTGTTCTAA+GGG | - | chr1_1:5905579-5905598 | Msa0003400:CDS | 40.0% | |
| !! | TAGTTGTTGTGGTGTTGATG+AGG | + | chr1_1:5905657-5905676 | None:intergenic | 40.0% |
| ! | ATCTCAAAGCTATGGCTCTG+AGG | - | chr1_1:5905363-5905382 | Msa0003400:CDS | 45.0% |
| ATGTCTGCAGAGGCCATAAT+TGG | + | chr1_1:5905775-5905794 | None:intergenic | 45.0% | |
| CCACATAAACATGTCTGCAG+AGG | + | chr1_1:5905785-5905804 | None:intergenic | 45.0% | |
| CCTCTGCAGACATGTTTATG+TGG | - | chr1_1:5905782-5905801 | Msa0003400:CDS | 45.0% | |
| GCGAATCGGCAAGAAGATCA+AGG | - | chr1_1:5905440-5905459 | Msa0003400:CDS | 50.0% | |
| CGGCAAGAAGATCAAGGATG+AGG | - | chr1_1:5905446-5905465 | Msa0003400:CDS | 50.0% | |
| ! | GATGAGGAAGCAGAAGCACA+TGG | - | chr1_1:5905462-5905481 | Msa0003400:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5905325 | 5905807 | 5905325 | ID=Msa0003400;Name=Msa0003400 |
| chr1_1 | mRNA | 5905325 | 5905807 | 5905325 | ID=Msa0003400-mRNA-1;Parent=Msa0003400;Name=Msa0003400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|160 |
| chr1_1 | exon | 5905325 | 5905807 | 5905325 | ID=Msa0003400-mRNA-1:exon:1898;Parent=Msa0003400-mRNA-1 |
| chr1_1 | CDS | 5905325 | 5905807 | 5905325 | ID=Msa0003400-mRNA-1:cds;Parent=Msa0003400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
