Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126430 | XP_013468910.1 | 96.675 | 391 | 10 | 1 | 1 | 388 | 1 | 391 | 0.0 | 787 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126430 | A0A072VMB2 | 96.675 | 391 | 10 | 1 | 1 | 388 | 1 | 391 | 0.0 | 787 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014280 | Msa0126430 | 0.822091 | 2.850950e-53 | -8.615850e-47 |
| Msa0030800 | Msa0126430 | 0.800509 | 1.394102e-48 | -8.615850e-47 |
| Msa0031410 | Msa0126430 | 0.872979 | 2.097398e-67 | -8.615850e-47 |
| Msa0034540 | Msa0126430 | 0.806402 | 8.369166e-50 | -8.615850e-47 |
| Msa0051480 | Msa0126430 | 0.800152 | 1.648056e-48 | -8.615850e-47 |
| Msa0070120 | Msa0126430 | 0.812331 | 4.474768e-51 | -8.615850e-47 |
| Msa0078700 | Msa0126430 | 0.826972 | 2.022958e-54 | -8.615850e-47 |
| Msa0107830 | Msa0126430 | 0.866168 | 3.472265e-65 | -8.615850e-47 |
| Msa0117650 | Msa0126430 | 0.814309 | 1.645583e-51 | -8.615850e-47 |
| Msa0126430 | Msa0129290 | 0.849447 | 3.214538e-60 | -8.615850e-47 |
| Msa0126430 | Msa0129770 | 0.806395 | 8.398130e-50 | -8.615850e-47 |
| Msa0126430 | Msa0143640 | 0.843543 | 1.313948e-58 | -8.615850e-47 |
| Msa0126430 | Msa0146200 | 0.801739 | 7.812125e-49 | -8.615850e-47 |
| Msa0126430 | Msa0150620 | 0.804747 | 1.862162e-49 | -8.615850e-47 |
| Msa0126430 | Msa0162680 | 0.822292 | 2.560527e-53 | -8.615850e-47 |
| Msa0126430 | Msa0164350 | 0.830638 | 2.624225e-55 | -8.615850e-47 |
| Msa0126430 | Msa0185040 | 0.836675 | 8.142102e-57 | -8.615850e-47 |
| Msa0126430 | Msa0185100 | 0.810170 | 1.316708e-50 | -8.615850e-47 |
| Msa0126430 | Msa0186240 | 0.823740 | 1.177382e-53 | -8.615850e-47 |
| Msa0126430 | Msa0191470 | 0.822353 | 2.478981e-53 | -8.615850e-47 |
| Msa0126430 | Msa0193950 | 0.813085 | 3.059268e-51 | -8.615850e-47 |
| Msa0126430 | Msa0200090 | 0.814826 | 1.263940e-51 | -8.615850e-47 |
| Msa0126430 | Msa0238330 | 0.806600 | 7.602666e-50 | -8.615850e-47 |
| Msa0126430 | Msa0242720 | 0.821013 | 5.058232e-53 | -8.615850e-47 |
| Msa0126430 | Msa0261020 | -0.809537 | 1.801552e-50 | -8.615850e-47 |
| Msa0126430 | Msa0267700 | 0.801152 | 1.030570e-48 | -8.615850e-47 |
| Msa0126430 | Msa0267900 | 0.831799 | 1.360399e-55 | -8.615850e-47 |
| Msa0126430 | Msa0271700 | 0.869254 | 3.553285e-66 | -8.615850e-47 |
| Msa0126430 | Msa0271720 | 0.862239 | 5.835463e-64 | -8.615850e-47 |
| Msa0126430 | Msa0275730 | 0.842346 | 2.735849e-58 | -8.615850e-47 |
| Msa0126430 | Msa0285890 | 0.801394 | 9.192990e-49 | -8.615850e-47 |
| Msa0126430 | Msa0310190 | 0.838887 | 2.202182e-57 | -8.615850e-47 |
| Msa0126430 | Msa0312300 | 0.821321 | 4.296221e-53 | -8.615850e-47 |
| Msa0126430 | Msa0314240 | 0.803370 | 3.601359e-49 | -8.615850e-47 |
| Msa0126430 | Msa0316230 | 0.815674 | 8.191488e-52 | -8.615850e-47 |
| Msa0126430 | Msa0319680 | 0.812623 | 3.861600e-51 | -8.615850e-47 |
| Msa0126430 | Msa0320130 | 0.818981 | 1.475699e-52 | -8.615850e-47 |
| Msa0126430 | Msa0320140 | 0.835214 | 1.911433e-56 | -8.615850e-47 |
| Msa0126430 | Msa0320170 | 0.837061 | 6.490924e-57 | -8.615850e-47 |
| Msa0126430 | Msa0324810 | 0.846244 | 2.452649e-59 | -8.615850e-47 |
| Msa0126430 | Msa0335050 | 0.804215 | 2.404129e-49 | -8.615850e-47 |
| Msa0126430 | Msa0336550 | -0.805603 | 1.232913e-49 | -8.615850e-47 |
| Msa0126430 | Msa0345890 | 0.805930 | 1.052415e-49 | -8.615850e-47 |
| Msa0126430 | Msa0346170 | 0.807327 | 5.336061e-50 | -8.615850e-47 |
| Msa0126430 | Msa0350180 | 0.814501 | 1.491827e-51 | -8.615850e-47 |
| Msa0126430 | Msa0353010 | 0.817858 | 2.650911e-52 | -8.615850e-47 |
| Msa0126430 | Msa0383900 | 0.810572 | 1.078568e-50 | -8.615850e-47 |
| Msa0126430 | Msa0388070 | 0.810141 | 1.335805e-50 | -8.615850e-47 |
| Msa0126430 | Msa0390200 | 0.864642 | 1.050140e-64 | -8.615850e-47 |
| Msa0126430 | Msa0393100 | 0.811674 | 6.221538e-51 | -8.615850e-47 |
| Msa0126430 | Msa0397200 | 0.839654 | 1.392474e-57 | -8.615850e-47 |
| Msa0126430 | Msa0400010 | 0.814907 | 1.212967e-51 | -8.615850e-47 |
| Msa0126430 | Msa0421080 | 0.824222 | 9.070677e-54 | -8.615850e-47 |
| Msa0126430 | Msa0422650 | 0.803678 | 3.109201e-49 | -8.615850e-47 |
| Msa0126430 | Msa0422740 | 0.823000 | 1.752722e-53 | -8.615850e-47 |
| Msa0126430 | Msa0422960 | 0.805486 | 1.304031e-49 | -8.615850e-47 |
| Msa0126430 | Msa0433090 | 0.819166 | 1.339240e-52 | -8.615850e-47 |
| Msa0126430 | Msa0434300 | 0.821935 | 3.099426e-53 | -8.615850e-47 |
| Msa0126430 | Msa0434400 | 0.815062 | 1.120389e-51 | -8.615850e-47 |
| Msa0126430 | Msa0459930 | 0.809426 | 1.903366e-50 | -8.615850e-47 |
| Msa0126430 | Msa0460600 | 0.828291 | 9.757556e-55 | -8.615850e-47 |
| Msa0126430 | Msa0478080 | 0.806544 | 7.814902e-50 | -8.615850e-47 |
| Msa0126430 | Msa0480540 | 0.802538 | 5.350302e-49 | -8.615850e-47 |
| Msa0126430 | Msa0493870 | 0.804082 | 2.561640e-49 | -8.615850e-47 |
| Msa0126430 | Msa0497690 | 0.812978 | 3.228820e-51 | -8.615850e-47 |
| Msa0126430 | Msa0497860 | 0.803690 | 3.090587e-49 | -8.615850e-47 |
| Msa0126430 | Msa0510870 | 0.802991 | 4.312930e-49 | -8.615850e-47 |
| Msa0126430 | Msa0512280 | 0.819484 | 1.133785e-52 | -8.615850e-47 |
| Msa0126430 | Msa0514750 | 0.813659 | 2.288277e-51 | -8.615850e-47 |
| Msa0126430 | Msa0522140 | 0.822328 | 2.512981e-53 | -8.615850e-47 |
| Msa0126430 | Msa0522170 | 0.823142 | 1.624160e-53 | -8.615850e-47 |
| Msa0126430 | Msa0524710 | 0.824845 | 6.471377e-54 | -8.615850e-47 |
| Msa0126430 | Msa0534610 | 0.820101 | 8.195897e-53 | -8.615850e-47 |
| Msa0126430 | Msa0556270 | 0.828625 | 8.102898e-55 | -8.615850e-47 |
| Msa0126430 | Msa0557240 | 0.860568 | 1.886906e-63 | -8.615850e-47 |
| Msa0126430 | Msa0561830 | 0.827170 | 1.813429e-54 | -8.615850e-47 |
| Msa0126430 | Msa0565120 | 0.831458 | 1.650459e-55 | -8.615850e-47 |
| Msa0126430 | Msa0565180 | 0.805328 | 1.407992e-49 | -8.615850e-47 |
| Msa0126430 | Msa0566530 | 0.855716 | 5.235981e-62 | -8.615850e-47 |
| Msa0126430 | Msa0572700 | 0.831266 | 1.839701e-55 | -8.615850e-47 |
| Msa0126430 | Msa0574420 | 0.802668 | 5.028797e-49 | -8.615850e-47 |
| Msa0126430 | Msa0580840 | 0.838096 | 3.523524e-57 | -8.615850e-47 |
| Msa0126430 | Msa0588730 | 0.815349 | 9.674493e-52 | -8.615850e-47 |
| Msa0126430 | Msa0589000 | 0.801674 | 8.053865e-49 | -8.615850e-47 |
| Msa0126430 | Msa0590810 | 0.819130 | 1.364968e-52 | -8.615850e-47 |
| Msa0126430 | Msa0597800 | 0.820331 | 7.258195e-53 | -8.615850e-47 |
| Msa0126430 | Msa0597820 | 0.839193 | 1.834228e-57 | -8.615850e-47 |
| Msa0126430 | Msa0614960 | 0.831828 | 1.338011e-55 | -8.615850e-47 |
| Msa0126430 | Msa0622800 | -0.802694 | 4.968234e-49 | -8.615850e-47 |
| Msa0126430 | Msa0628200 | 0.811101 | 8.284464e-51 | -8.615850e-47 |
| Msa0126430 | Msa0629030 | 0.816555 | 5.206846e-52 | -8.615850e-47 |
| Msa0126430 | Msa0629040 | 0.805009 | 1.641528e-49 | -8.615850e-47 |
| Msa0126430 | Msa0631130 | 0.802734 | 4.874661e-49 | -8.615850e-47 |
| Msa0126430 | Msa0637590 | 0.839065 | 1.980474e-57 | -8.615850e-47 |
| Msa0126430 | Msa0637700 | 0.810762 | 9.812468e-51 | -8.615850e-47 |
| Msa0126430 | Msa0652590 | 0.871346 | 7.329675e-67 | -8.615850e-47 |
| Msa0126430 | Msa0655370 | 0.822591 | 2.182480e-53 | -8.615850e-47 |
| Msa0126430 | Msa0657260 | 0.820265 | 7.513781e-53 | -8.615850e-47 |
| Msa0126430 | Msa0666580 | 0.815083 | 1.108577e-51 | -8.615850e-47 |
| Msa0126430 | Msa0666950 | 0.817181 | 3.767888e-52 | -8.615850e-47 |
| Msa0126430 | Msa0669350 | 0.815552 | 8.718346e-52 | -8.615850e-47 |
| Msa0126430 | Msa0675590 | 0.810586 | 1.070799e-50 | -8.615850e-47 |
| Msa0126430 | Msa0694320 | 0.831995 | 1.216933e-55 | -8.615850e-47 |
| Msa0126430 | Msa0699170 | 0.846638 | 1.915051e-59 | -8.615850e-47 |
| Msa0126430 | Msa0701490 | 0.821983 | 3.019892e-53 | -8.615850e-47 |
| Msa0126430 | Msa0701560 | 0.818193 | 2.227456e-52 | -8.615850e-47 |
| Msa0126430 | Msa0703030 | 0.806998 | 6.265143e-50 | -8.615850e-47 |
| Msa0126430 | Msa0704560 | 0.829681 | 4.493321e-55 | -8.615850e-47 |
| Msa0126430 | Msa0716620 | 0.849684 | 2.760319e-60 | -8.615850e-47 |
| Msa0126430 | Msa0717860 | 0.803094 | 4.107147e-49 | -8.615850e-47 |
| Msa0126430 | Msa0728520 | 0.808219 | 3.449433e-50 | -8.615850e-47 |
| Msa0126430 | Msa0731580 | 0.826222 | 3.053308e-54 | -8.615850e-47 |
| Msa0126430 | Msa0740630 | 0.808986 | 2.365451e-50 | -8.615850e-47 |
| Msa0126430 | Msa0744550 | 0.801271 | 9.741685e-49 | -8.615850e-47 |
| Msa0126430 | Msa0744710 | 0.829982 | 3.793910e-55 | -8.615850e-47 |
| Msa0126430 | Msa0745160 | 0.842880 | 1.972800e-58 | -8.615850e-47 |
| Msa0126430 | Msa0750790 | 0.804390 | 2.210233e-49 | -8.615850e-47 |
| Msa0126430 | Msa0750830 | 0.839510 | 1.517392e-57 | -8.615850e-47 |
| Msa0126430 | Msa0758520 | 0.843454 | 1.387585e-58 | -8.615850e-47 |
| Msa0126430 | Msa0758570 | 0.852645 | 4.029813e-61 | -8.615850e-47 |
| Msa0126430 | Msa0765140 | 0.800426 | 1.449310e-48 | -8.615850e-47 |
| Msa0126430 | Msa0771810 | 0.818710 | 1.700590e-52 | -8.615850e-47 |
| Msa0126430 | Msa0772350 | 0.847165 | 1.373911e-59 | -8.615850e-47 |
| Msa0126430 | Msa0776540 | 0.814161 | 1.773837e-51 | -8.615850e-47 |
| Msa0126430 | Msa0776660 | 0.836080 | 1.154019e-56 | -8.615850e-47 |
| Msa0126430 | Msa0794200 | 0.835081 | 2.065109e-56 | -8.615850e-47 |
| Msa0126430 | Msa0795320 | 0.822953 | 1.797892e-53 | -8.615850e-47 |
| Msa0126430 | Msa0804870 | 0.806795 | 6.916297e-50 | -8.615850e-47 |
| Msa0126430 | Msa0809920 | 0.821985 | 3.016696e-53 | -8.615850e-47 |
| Msa0126430 | Msa0817190 | 0.837345 | 5.490760e-57 | -8.615850e-47 |
| Msa0126430 | Msa0820880 | 0.810965 | 8.868162e-51 | -8.615850e-47 |
| Msa0126430 | Msa0826240 | 0.832589 | 8.670816e-56 | -8.615850e-47 |
| Msa0126430 | Msa0830930 | 0.804519 | 2.077865e-49 | -8.615850e-47 |
| Msa0126430 | Msa0838870 | 0.847087 | 1.443729e-59 | -8.615850e-47 |
| Msa0126430 | Msa0850480 | 0.813830 | 2.097994e-51 | -8.615850e-47 |
| Msa0126430 | Msa0859040 | 0.814337 | 1.622009e-51 | -8.615850e-47 |
| Msa0126430 | Msa0865430 | 0.826052 | 3.352596e-54 | -8.615850e-47 |
| Msa0126430 | Msa0874750 | 0.841372 | 4.946110e-58 | -8.615850e-47 |
| Msa0126430 | Msa0910560 | 0.829052 | 6.384951e-55 | -8.615850e-47 |
| Msa0126430 | Msa0921790 | 0.806874 | 6.654343e-50 | -8.615850e-47 |
| Msa0126430 | Msa0925940 | 0.814758 | 1.308790e-51 | -8.615850e-47 |
| Msa0126430 | Msa0968990 | 0.833927 | 4.024963e-56 | -8.615850e-47 |
| Msa0126430 | Msa0976400 | 0.833866 | 4.170067e-56 | -8.615850e-47 |
| Msa0126430 | Msa0983040 | 0.801513 | 8.691186e-49 | -8.615850e-47 |
| Msa0126430 | Msa0985380 | 0.821490 | 3.927093e-53 | -8.615850e-47 |
| Msa0126430 | Msa1007900 | 0.808686 | 2.741279e-50 | -8.615850e-47 |
| Msa0126430 | Msa1016100 | 0.815947 | 7.120862e-52 | -8.615850e-47 |
| Msa0126430 | Msa1023430 | 0.816344 | 5.803601e-52 | -8.615850e-47 |
| Msa0126430 | Msa1027910 | 0.846683 | 1.861606e-59 | -8.615850e-47 |
| Msa0126430 | Msa1030210 | 0.863921 | 1.762742e-64 | -8.615850e-47 |
| Msa0126430 | Msa1035050 | 0.857673 | 1.391013e-62 | -8.615850e-47 |
| Msa0126430 | Msa1040330 | 0.806247 | 9.024439e-50 | -8.615850e-47 |
| Msa0126430 | Msa1061840 | 0.828570 | 8.352341e-55 | -8.615850e-47 |
| Msa0126430 | Msa1069250 | 0.857511 | 1.553315e-62 | -8.615850e-47 |
| Msa0126430 | Msa1071350 | 0.826005 | 3.438738e-54 | -8.615850e-47 |
| Msa0126430 | Msa1075090 | 0.852299 | 5.055883e-61 | -8.615850e-47 |
| Msa0126430 | Msa1077970 | 0.834459 | 2.961830e-56 | -8.615850e-47 |
| Msa0126430 | Msa1084890 | 0.856796 | 2.524337e-62 | -8.615850e-47 |
| Msa0126430 | Msa1085820 | 0.815743 | 7.906693e-52 | -8.615850e-47 |
| Msa0126430 | Msa1095590 | 0.803789 | 2.948341e-49 | -8.615850e-47 |
| Msa0126430 | Msa1102210 | 0.859897 | 3.009523e-63 | -8.615850e-47 |
| Msa0126430 | Msa1105360 | 0.808099 | 3.657243e-50 | -8.615850e-47 |
| Msa0126430 | Msa1107220 | 0.811948 | 5.422757e-51 | -8.615850e-47 |
| Msa0126430 | Msa1107510 | 0.809734 | 1.634116e-50 | -8.615850e-47 |
| Msa0126430 | Msa1110900 | 0.846651 | 1.899221e-59 | -8.615850e-47 |
| Msa0126430 | Msa1115980 | 0.827114 | 1.871115e-54 | -8.615850e-47 |
| Msa0126430 | Msa1120580 | 0.843990 | 9.971222e-59 | -8.615850e-47 |
| Msa0126430 | Msa1131120 | 0.848248 | 6.917396e-60 | -8.615850e-47 |
| Msa0126430 | Msa1136630 | 0.841601 | 4.305217e-58 | -8.615850e-47 |
| Msa0126430 | Msa1136690 | 0.816002 | 6.920877e-52 | -8.615850e-47 |
| Msa0126430 | Msa1136760 | 0.817506 | 3.182627e-52 | -8.615850e-47 |
| Msa0126430 | Msa1137750 | 0.813289 | 2.759741e-51 | -8.615850e-47 |
| Msa0126430 | Msa1142390 | 0.800531 | 1.379652e-48 | -8.615850e-47 |
| Msa0126430 | Msa1150760 | 0.801540 | 8.580722e-49 | -8.615850e-47 |
| Msa0126430 | Msa1151070 | 0.821521 | 3.863926e-53 | -8.615850e-47 |
| Msa0126430 | Msa1157110 | 0.830633 | 2.631570e-55 | -8.615850e-47 |
| Msa0126430 | Msa1162430 | 0.809743 | 1.626820e-50 | -8.615850e-47 |
| Msa0126430 | Msa1174280 | 0.811416 | 7.076740e-51 | -8.615850e-47 |
| Msa0126430 | Msa1185270 | 0.817495 | 3.201147e-52 | -8.615850e-47 |
| Msa0126430 | Msa1191270 | 0.805269 | 1.448029e-49 | -8.615850e-47 |
| Msa0126430 | Msa1202110 | 0.825593 | 4.307692e-54 | -8.615850e-47 |
| Msa0126430 | Msa1203810 | 0.812201 | 4.775441e-51 | -8.615850e-47 |
| Msa0126430 | Msa1208050 | 0.803515 | 3.360879e-49 | -8.615850e-47 |
| Msa0126430 | Msa1208140 | 0.814089 | 1.839564e-51 | -8.615850e-47 |
| Msa0126430 | Msa1211610 | 0.862407 | 5.178385e-64 | -8.615850e-47 |
| Msa0126430 | Msa1223560 | 0.807734 | 4.372904e-50 | -8.615850e-47 |
| Msa0126430 | Msa1239190 | 0.801319 | 9.525181e-49 | -8.615850e-47 |
| Msa0126430 | Msa1239210 | 0.809940 | 1.476250e-50 | -8.615850e-47 |
| Msa0126430 | Msa1254870 | 0.827041 | 1.947091e-54 | -8.615850e-47 |
| Msa0126430 | Msa1296490 | 0.809113 | 2.221413e-50 | -8.615850e-47 |
| Msa0126430 | Msa1299480 | 0.850852 | 1.299070e-60 | -8.615850e-47 |
| Msa0126430 | Msa1303400 | 0.829122 | 6.142042e-55 | -8.615850e-47 |
| Msa0126430 | Msa1320160 | 0.815720 | 7.998771e-52 | -8.615850e-47 |
| Msa0126430 | Msa1328430 | 0.826775 | 2.254583e-54 | -8.615850e-47 |
| Msa0126430 | Msa1357570 | 0.801403 | 9.155610e-49 | -8.615850e-47 |
| Msa0126430 | Msa1364690 | 0.809687 | 1.672749e-50 | -8.615850e-47 |
| Msa0126430 | Msa1377050 | 0.805772 | 1.136197e-49 | -8.615850e-47 |
| Msa0126430 | Msa1378020 | 0.801177 | 1.018093e-48 | -8.615850e-47 |
| Msa0126430 | Msa1387610 | 0.817014 | 4.108360e-52 | -8.615850e-47 |
| Msa0126430 | Msa1390200 | 0.844293 | 8.269726e-59 | -8.615850e-47 |
| Msa0126430 | Msa1395250 | 0.804053 | 2.597469e-49 | -8.615850e-47 |
| Msa0126430 | Msa1398120 | 0.806321 | 8.708403e-50 | -8.615850e-47 |
| Msa0126430 | Msa1398140 | 0.814897 | 1.219271e-51 | -8.615850e-47 |
| Msa0126430 | Msa1405500 | 0.802439 | 5.608216e-49 | -8.615850e-47 |
| Msa0126430 | Msa1405530 | 0.806097 | 9.704171e-50 | -8.615850e-47 |
| Msa0126430 | Msa1427000 | 0.826845 | 2.169563e-54 | -8.615850e-47 |
| Msa0126430 | Msa1437590 | 0.823750 | 1.170492e-53 | -8.615850e-47 |
| Msa0126430 | Msa1438160 | 0.828968 | 6.693194e-55 | -8.615850e-47 |
| Msa0126430 | Msa1438470 | 0.806050 | 9.926679e-50 | -8.615850e-47 |
| Msa0126430 | Msa1439780 | 0.829933 | 3.900565e-55 | -8.615850e-47 |
| Msa0126430 | Msa1443990 | 0.811676 | 6.213799e-51 | -8.615850e-47 |
| Msa0126430 | Msa1449470 | 0.809678 | 1.680196e-50 | -8.615850e-47 |
| Msa0126430 | Msa1450970 | 0.806321 | 8.704424e-50 | -8.615850e-47 |
| Msa0126430 | Msa1455200 | 0.817895 | 2.601092e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126430 | MtrunA17_Chr1g0189401 | 96.675 | 391 | 10 | 1 | 1 | 388 | 1 | 391 | 0.0 | 787 |
| Msa0126430 | MtrunA17_Chr2g0276851 | 56.461 | 356 | 143 | 5 | 38 | 388 | 36 | 384 | 9.07e-149 | 426 |
| Msa0126430 | MtrunA17_Chr2g0281421 | 55.486 | 319 | 129 | 3 | 79 | 388 | 78 | 392 | 3.88e-130 | 379 |
| Msa0126430 | MtrunA17_Chr4g0047961 | 57.556 | 311 | 125 | 3 | 79 | 388 | 60 | 364 | 1.71e-129 | 376 |
| Msa0126430 | MtrunA17_Chr7g0227041 | 42.897 | 359 | 181 | 9 | 26 | 379 | 51 | 390 | 3.78e-87 | 270 |
| Msa0126430 | MtrunA17_Chr3g0123571 | 45.695 | 302 | 145 | 7 | 75 | 376 | 98 | 380 | 5.18e-83 | 259 |
| Msa0126430 | MtrunA17_Chr8g0381611 | 48.148 | 270 | 127 | 6 | 75 | 344 | 89 | 345 | 1.29e-81 | 254 |
| Msa0126430 | MtrunA17_Chr8g0381601 | 44.371 | 302 | 149 | 7 | 75 | 376 | 97 | 379 | 9.46e-81 | 253 |
| Msa0126430 | MtrunA17_Chr4g0028891 | 48.106 | 264 | 122 | 7 | 75 | 337 | 118 | 367 | 1.01e-78 | 248 |
| Msa0126430 | MtrunA17_Chr2g0326801 | 40.597 | 335 | 180 | 8 | 45 | 379 | 64 | 379 | 1.06e-77 | 244 |
| Msa0126430 | MtrunA17_Chr3g0095271 | 59.494 | 79 | 8 | 2 | 217 | 294 | 6 | 61 | 8.98e-21 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126430 | AT4G18530.1 | 56.589 | 387 | 144 | 4 | 20 | 387 | 8 | 389 | 5.27e-155 | 442 |
| Msa0126430 | AT4G18530.3 | 56.589 | 387 | 144 | 4 | 20 | 387 | 3 | 384 | 7.91e-155 | 442 |
| Msa0126430 | AT4G12840.2 | 53.865 | 401 | 160 | 5 | 2 | 388 | 5 | 394 | 1.98e-154 | 441 |
| Msa0126430 | AT4G12840.1 | 53.598 | 403 | 163 | 5 | 1 | 388 | 1 | 394 | 4.44e-154 | 440 |
| Msa0126430 | AT4G12840.3 | 60.518 | 309 | 99 | 4 | 94 | 388 | 1 | 300 | 3.47e-136 | 391 |
| Msa0126430 | AT1G11170.1 | 54.574 | 317 | 130 | 5 | 79 | 386 | 83 | 394 | 6.64e-123 | 362 |
| Msa0126430 | AT1G11170.6 | 54.574 | 317 | 130 | 5 | 79 | 386 | 83 | 394 | 6.64e-123 | 362 |
| Msa0126430 | AT1G11170.5 | 54.574 | 317 | 130 | 5 | 79 | 386 | 83 | 394 | 6.64e-123 | 362 |
| Msa0126430 | AT1G11170.7 | 54.574 | 317 | 130 | 5 | 79 | 386 | 83 | 394 | 6.64e-123 | 362 |
| Msa0126430 | AT4G18530.2 | 55.663 | 309 | 124 | 3 | 13 | 313 | 1 | 304 | 1.58e-121 | 354 |
| Msa0126430 | AT1G61240.8 | 54.747 | 316 | 130 | 4 | 79 | 385 | 13 | 324 | 6.91e-121 | 354 |
| Msa0126430 | AT1G61240.4 | 54.747 | 316 | 130 | 4 | 79 | 385 | 80 | 391 | 4.30e-120 | 355 |
| Msa0126430 | AT1G61240.5 | 54.747 | 316 | 130 | 4 | 79 | 385 | 80 | 391 | 4.30e-120 | 355 |
| Msa0126430 | AT1G61240.6 | 54.747 | 316 | 130 | 4 | 79 | 385 | 80 | 391 | 4.30e-120 | 355 |
| Msa0126430 | AT1G61240.2 | 54.747 | 316 | 130 | 4 | 79 | 385 | 80 | 391 | 4.30e-120 | 355 |
| Msa0126430 | AT1G61240.1 | 54.747 | 316 | 130 | 4 | 79 | 385 | 80 | 391 | 4.30e-120 | 355 |
| Msa0126430 | AT1G61240.3 | 54.747 | 316 | 130 | 4 | 79 | 385 | 80 | 391 | 4.30e-120 | 355 |
| Msa0126430 | AT1G11170.4 | 58.077 | 260 | 103 | 3 | 79 | 337 | 83 | 337 | 7.83e-111 | 328 |
| Msa0126430 | AT1G11170.8 | 58.077 | 260 | 103 | 3 | 79 | 337 | 83 | 337 | 7.83e-111 | 328 |
| Msa0126430 | AT1G11170.3 | 56.618 | 272 | 110 | 4 | 79 | 347 | 83 | 349 | 8.04e-111 | 329 |
| Msa0126430 | AT1G61240.7 | 54.639 | 291 | 122 | 3 | 79 | 369 | 80 | 360 | 1.51e-110 | 328 |
| Msa0126430 | AT1G11170.2 | 56.780 | 236 | 96 | 3 | 79 | 313 | 83 | 313 | 9.08e-97 | 292 |
| Msa0126430 | AT1G67850.4 | 45.902 | 305 | 146 | 7 | 75 | 379 | 85 | 370 | 1.04e-82 | 258 |
| Msa0126430 | AT3G26440.4 | 41.484 | 364 | 189 | 10 | 16 | 376 | 12 | 354 | 1.47e-82 | 257 |
| Msa0126430 | AT1G67850.6 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 1.59e-82 | 258 |
| Msa0126430 | AT1G67850.7 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 1.59e-82 | 258 |
| Msa0126430 | AT1G67850.1 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 1.59e-82 | 258 |
| Msa0126430 | AT1G67850.3 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 1.59e-82 | 258 |
| Msa0126430 | AT1G67850.2 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 1.59e-82 | 258 |
| Msa0126430 | AT1G67850.5 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 1.59e-82 | 258 |
| Msa0126430 | AT3G26440.1 | 46.205 | 303 | 143 | 9 | 75 | 376 | 95 | 378 | 5.60e-81 | 254 |
| Msa0126430 | AT3G26440.2 | 46.205 | 303 | 143 | 9 | 75 | 376 | 95 | 378 | 5.60e-81 | 254 |
| Msa0126430 | AT3G26440.5 | 46.205 | 303 | 143 | 9 | 75 | 376 | 118 | 401 | 6.88e-81 | 254 |
| Msa0126430 | AT3G26440.6 | 46.205 | 303 | 143 | 9 | 75 | 376 | 118 | 401 | 7.33e-81 | 254 |
| Msa0126430 | AT3G27470.2 | 40.608 | 362 | 188 | 10 | 18 | 372 | 34 | 375 | 8.73e-81 | 253 |
| Msa0126430 | AT3G27470.1 | 40.608 | 362 | 188 | 10 | 18 | 372 | 34 | 375 | 8.73e-81 | 253 |
| Msa0126430 | AT3G27470.4 | 40.608 | 362 | 188 | 10 | 18 | 372 | 34 | 375 | 8.73e-81 | 253 |
| Msa0126430 | AT3G27470.3 | 40.608 | 362 | 188 | 10 | 18 | 372 | 34 | 375 | 8.73e-81 | 253 |
| Msa0126430 | AT3G27470.5 | 40.608 | 362 | 188 | 10 | 18 | 372 | 34 | 375 | 1.34e-80 | 253 |
| Msa0126430 | AT1G24570.2 | 48.302 | 265 | 124 | 6 | 75 | 338 | 84 | 336 | 1.67e-80 | 252 |
| Msa0126430 | AT1G13000.2 | 41.226 | 359 | 186 | 9 | 27 | 379 | 51 | 390 | 2.35e-80 | 252 |
| Msa0126430 | AT1G13000.5 | 41.226 | 359 | 186 | 9 | 27 | 379 | 51 | 390 | 2.35e-80 | 252 |
| Msa0126430 | AT1G13000.4 | 41.226 | 359 | 186 | 9 | 27 | 379 | 51 | 390 | 2.35e-80 | 252 |
| Msa0126430 | AT1G13000.1 | 41.226 | 359 | 186 | 9 | 27 | 379 | 51 | 390 | 2.35e-80 | 252 |
| Msa0126430 | AT3G26440.3 | 48.864 | 264 | 121 | 6 | 75 | 337 | 95 | 345 | 7.39e-80 | 250 |
| Msa0126430 | AT1G08040.3 | 43.092 | 304 | 154 | 7 | 75 | 378 | 84 | 368 | 2.86e-79 | 249 |
| Msa0126430 | AT1G08040.2 | 43.092 | 304 | 154 | 7 | 75 | 378 | 88 | 372 | 3.01e-79 | 249 |
| Msa0126430 | AT1G08040.4 | 43.092 | 304 | 154 | 7 | 75 | 378 | 88 | 372 | 3.01e-79 | 249 |
| Msa0126430 | AT1G08040.1 | 43.092 | 304 | 154 | 7 | 75 | 378 | 88 | 372 | 3.01e-79 | 249 |
| Msa0126430 | AT2G28310.2 | 43.934 | 305 | 152 | 7 | 75 | 379 | 81 | 366 | 5.77e-79 | 248 |
| Msa0126430 | AT2G28310.1 | 43.934 | 305 | 152 | 7 | 75 | 379 | 81 | 366 | 5.77e-79 | 248 |
| Msa0126430 | AT2G28310.3 | 43.934 | 305 | 152 | 7 | 75 | 379 | 81 | 366 | 5.77e-79 | 248 |
| Msa0126430 | AT1G24570.1 | 48.092 | 262 | 123 | 6 | 78 | 338 | 80 | 329 | 9.67e-79 | 247 |
| Msa0126430 | AT1G13000.3 | 49.791 | 239 | 108 | 5 | 75 | 313 | 105 | 331 | 9.88e-74 | 233 |
| Msa0126430 | AT1G11170.9 | 56.000 | 175 | 74 | 1 | 79 | 253 | 83 | 254 | 5.39e-66 | 210 |
| Msa0126430 | AT2G25905.1 | 55.833 | 120 | 51 | 2 | 112 | 230 | 109 | 227 | 4.26e-39 | 139 |
Find 94 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGAGCTGAGACCTTTA+TGG | 0.208347 | 1_3:-55508613 | Msa0126430:CDS |
| AAAGATACATTACATAAATA+AGG | 0.289084 | 1_3:-55509500 | Msa0126430:intron |
| CACGCAGCTCTTGAGAAAAC+AGG | 0.313108 | 1_3:+55506950 | None:intergenic |
| TGTTTATATGTAATCTTTCC+AGG | 0.314586 | 1_3:-55509006 | Msa0126430:CDS |
| TTGTGTCTGGTACATGATTC+AGG | 0.381583 | 1_3:-55506924 | Msa0126430:intron |
| GCAGGTGATGACTTGATATC+TGG | 0.391084 | 1_3:+55509305 | None:intergenic |
| ACATTTAAAGCTGTTATTGA+TGG | 0.400949 | 1_3:-55507122 | Msa0126430:CDS |
| AGGTATTGTACATACTTCTC+AGG | 0.405666 | 1_3:+55507477 | None:intergenic |
| TGCACATGTTGCTATTGAAA+TGG | 0.405863 | 1_3:+55505641 | None:intergenic |
| AGTCTCGAGTACTTCGAGTT+TGG | 0.408882 | 1_3:-55508630 | Msa0126430:CDS |
| AGTCGACAAGATGGTCAAAA+AGG | 0.413897 | 1_3:-55507904 | Msa0126430:intron |
| CACTACAATCGTCCCACTCT+TGG | 0.414064 | 1_3:-55506411 | Msa0126430:CDS |
| ACGTTGGGTCAAGGCGGTTA+AGG | 0.422001 | 1_3:-55505684 | Msa0126430:CDS |
| TTTCAGATGGATAGAAATGA+TGG | 0.430064 | 1_3:-55506975 | Msa0126430:intron |
| GAGCTGCGTGGCGTTGTGTC+TGG | 0.432485 | 1_3:-55506937 | Msa0126430:CDS |
| GTTTCTATTGTCAAAGAAGA+AGG | 0.437319 | 1_3:-55507342 | Msa0126430:CDS |
| TTCAGATTCATCTCAGGAAA+AGG | 0.450344 | 1_3:-55506252 | Msa0126430:CDS |
| AGCTTGTTTGCGATGGCAGT+TGG | 0.451629 | 1_3:-55507945 | Msa0126430:CDS |
| TGCATACTTATGATAGATGC+AGG | 0.458594 | 1_3:-55508794 | Msa0126430:CDS |
| AAAGCTGTTATTGATGGTAA+AGG | 0.462651 | 1_3:-55507116 | Msa0126430:CDS |
| ATCGCAAACAAGCTGGTTGA+TGG | 0.464332 | 1_3:+55507954 | None:intergenic |
| CATATAGCGGTAGTCGATCA+AGG | 0.469047 | 1_3:-55507703 | Msa0126430:CDS |
| TGGAAGTGAAGCGTTACCTC+AGG | 0.471212 | 1_3:-55508657 | Msa0126430:CDS |
| CCATTCTTCGACATCCATAA+AGG | 0.475647 | 1_3:+55508599 | None:intergenic |
| GCAGCTTGGCTACTGTTCTC+AGG | 0.478528 | 1_3:-55506784 | Msa0126430:intron |
| ACGAATGGAAGAAATTCAAA+TGG | 0.484655 | 1_3:-55507741 | Msa0126430:CDS |
| GCAGGTTTCAGATTCATCTC+AGG | 0.487141 | 1_3:-55506258 | Msa0126430:intron |
| TCATACTCAGCAACTATGTC+GGG | 0.496770 | 1_3:+55507546 | None:intergenic |
| CGTCGACATTTCCATCATAG+TGG | 0.497517 | 1_3:+55507761 | None:intergenic |
| AGTTGGTTGACGAAAGGAGC+GGG | 0.499875 | 1_3:+55509544 | None:intergenic |
| CGGTTAAGGAGGATAAATGT+TGG | 0.503478 | 1_3:-55505670 | Msa0126430:CDS |
| TTTCTATTGTCAAAGAAGAA+GGG | 0.503868 | 1_3:-55507341 | Msa0126430:CDS |
| ACAAATAATAAAAGTGCCCC+TGG | 0.506618 | 1_3:+55508988 | None:intergenic |
| GTTGTCTGTGCCTCCAAGAG+TGG | 0.509286 | 1_3:+55506398 | None:intergenic |
| ATATCAAGTCATCACCTGCT+AGG | 0.510981 | 1_3:-55509301 | Msa0126430:CDS |
| TACAATCGTCCCACTCTTGG+AGG | 0.517019 | 1_3:-55506408 | Msa0126430:CDS |
| TTGTTTAGTAGAAGCAGTGC+AGG | 0.518852 | 1_3:-55508685 | Msa0126430:intron |
| ATCATACTCAGCAACTATGT+CGG | 0.519378 | 1_3:+55507545 | None:intergenic |
| TTTATTCAATAAGGTTTGGA+GGG | 0.520682 | 1_3:-55505442 | Msa0126430:three_prime_UTR |
| AGCACAGCTCCTCCTTGCAC+CGG | 0.522368 | 1_3:-55507080 | Msa0126430:CDS |
| CGGTAGTCGATCAAGGCAAA+TGG | 0.523052 | 1_3:-55507696 | Msa0126430:intron |
| GACACTTTGGAGAGTCTCAA+AGG | 0.530501 | 1_3:-55505504 | Msa0126430:three_prime_UTR |
| AAGAGGTTACGTACCCTAGC+AGG | 0.533358 | 1_3:+55509287 | None:intergenic |
| ATCAACCAGCTTGTTTGCGA+TGG | 0.533527 | 1_3:-55507952 | Msa0126430:CDS |
| GTTTATATGTAATCTTTCCA+GGG | 0.534679 | 1_3:-55509005 | Msa0126430:CDS |
| AACTGCCATCGCAAACAAGC+TGG | 0.536102 | 1_3:+55507947 | None:intergenic |
| TTAAAGATAAGAGAGAGAGT+TGG | 0.539047 | 1_3:+55509527 | None:intergenic |
| TACCTCTTTGTAGCTTTGTG+AGG | 0.540956 | 1_3:+55508939 | None:intergenic |
| TCTCAAAGGGCATCATGGTA+TGG | 0.542653 | 1_3:-55505490 | Msa0126430:three_prime_UTR |
| GGTTAAGGAGGATAAATGTT+GGG | 0.545766 | 1_3:-55505669 | Msa0126430:CDS |
| GGAAATAAAATAAGAGAATG+TGG | 0.546599 | 1_3:-55505421 | Msa0126430:three_prime_UTR |
| CAATTGAGACAAAGACACTT+TGG | 0.546829 | 1_3:-55505517 | Msa0126430:three_prime_UTR |
| CCTTTATGGATGTCGAAGAA+TGG | 0.546871 | 1_3:-55508599 | Msa0126430:CDS |
| TCATGGTATGGTTCAGTCAG+TGG | 0.550042 | 1_3:-55505478 | Msa0126430:three_prime_UTR |
| TTAATTATTTACCCGGTGCA+AGG | 0.552167 | 1_3:+55507068 | None:intergenic |
| GAGAGTCTCAAAGGGCATCA+TGG | 0.568772 | 1_3:-55505495 | Msa0126430:three_prime_UTR |
| ACACTTTGGAGAGTCTCAAA+GGG | 0.568974 | 1_3:-55505503 | Msa0126430:three_prime_UTR |
| TATCAAGTCATCACCTGCTA+GGG | 0.571345 | 1_3:-55509300 | Msa0126430:intron |
| ATGATGGAAATGTCGACGAA+TGG | 0.572552 | 1_3:-55507756 | Msa0126430:CDS |
| GCACAGCTCCTCCTTGCACC+GGG | 0.572784 | 1_3:-55507079 | Msa0126430:intron |
| TAGAAGCAGTGCAGGCCTAG+TGG | 0.573391 | 1_3:-55508677 | Msa0126430:CDS |
| GAAAGATTTAGTCGACAAGA+TGG | 0.580046 | 1_3:-55507913 | Msa0126430:CDS |
| GCATATCTAGTCCCCACGCA+TGG | 0.583645 | 1_3:+55506805 | None:intergenic |
| ATTGATGGTAAAGGCTGTGA+TGG | 0.584608 | 1_3:-55507107 | Msa0126430:CDS |
| GGTAAGGAGACTTTCTTACA+AGG | 0.584746 | 1_3:-55505726 | Msa0126430:CDS |
| GATGACTTGATATCTGGCAT+TGG | 0.586247 | 1_3:+55509311 | None:intergenic |
| TTGTCTGTGCCTCCAAGAGT+GGG | 0.587991 | 1_3:+55506399 | None:intergenic |
| GAACGACTTGATCCATGCGT+GGG | 0.589877 | 1_3:-55506817 | Msa0126430:CDS |
| ACGCAGCTCTTGAGAAAACA+GGG | 0.591560 | 1_3:+55506951 | None:intergenic |
| TTTATATGTAATCTTTCCAG+GGG | 0.591637 | 1_3:-55509004 | Msa0126430:CDS |
| AGAGAGAGTTGGTTGACGAA+AGG | 0.597733 | 1_3:+55509538 | None:intergenic |
| AAATTACCGCACGTGGTAGG+AGG | 0.599371 | 1_3:-55507266 | Msa0126430:CDS |
| TTGGGTCAAGGCGGTTAAGG+AGG | 0.601086 | 1_3:-55505681 | Msa0126430:CDS |
| GTAGGAGGTCAAAAGTGCAC+AGG | 0.604453 | 1_3:-55507251 | Msa0126430:intron |
| ATCCTCACAAAGCTACAAAG+AGG | 0.605266 | 1_3:-55508941 | Msa0126430:intron |
| GGAAGTGAAGCGTTACCTCA+GGG | 0.611369 | 1_3:-55508656 | Msa0126430:CDS |
| GGTATTGTACATACTTCTCA+GGG | 0.613026 | 1_3:+55507478 | None:intergenic |
| TTCCTTTGGGATGAGGACCT+AGG | 0.614499 | 1_3:-55507516 | Msa0126430:CDS |
| CATCATCAAATTACCGCACG+TGG | 0.620146 | 1_3:-55507273 | Msa0126430:CDS |
| CTCCTAGGTCCTCATCCCAA+AGG | 0.625352 | 1_3:+55507514 | None:intergenic |
| ATCAAATTACCGCACGTGGT+AGG | 0.635282 | 1_3:-55507269 | Msa0126430:CDS |
| TGATGATGTCGTTCATATAG+CGG | 0.641214 | 1_3:-55507716 | Msa0126430:CDS |
| AGAACGACTTGATCCATGCG+TGG | 0.644784 | 1_3:-55506818 | Msa0126430:CDS |
| TGGGGACTAGATATGCAGCT+TGG | 0.650458 | 1_3:-55506798 | Msa0126430:CDS |
| ATTATTTACCCGGTGCAAGG+AGG | 0.658449 | 1_3:+55507071 | None:intergenic |
| GCATACTTATGATAGATGCA+GGG | 0.660134 | 1_3:-55508793 | Msa0126430:intron |
| ATTGTAGTGAATAATGTACT+CGG | 0.667033 | 1_3:+55506425 | None:intergenic |
| GGAGCGGGAAGCGAAAATCA+CGG | 0.672264 | 1_3:+55509559 | None:intergenic |
| AACGACTTGATCCATGCGTG+GGG | 0.688349 | 1_3:-55506816 | Msa0126430:CDS |
| GGTAACGCTTCACTTCCACT+AGG | 0.692454 | 1_3:+55508662 | None:intergenic |
| CGCAGCTCTTGAGAAAACAG+GGG | 0.701745 | 1_3:+55506952 | None:intergenic |
| GAGTTGGTTGACGAAAGGAG+CGG | 0.706326 | 1_3:+55509543 | None:intergenic |
| ATTGTACATACTTCTCAGGG+TGG | 0.711500 | 1_3:+55507481 | None:intergenic |
| GTACTCGAGACTATACCCTG+AGG | 0.801494 | 1_3:+55508641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATATATGAAAAAAAAT+AGG | - | chr1_3:55505670-55505689 | Msa0126430:CDS | 10.0% |
| !! | AATTATGTTATGATATTATA+GGG | - | chr1_3:55505772-55505791 | Msa0126430:intron | 10.0% |
| !! | AAAGATACATTACATAAATA+AGG | - | chr1_3:55505381-55505400 | Msa0126430:three_prime_UTR | 15.0% |
| !!! | GGAATCAAAAATTTTTATAT+AGG | - | chr1_3:55505691-55505710 | Msa0126430:CDS | 15.0% |
| !! | CAATTATGTTATGATATTAT+AGG | - | chr1_3:55505771-55505790 | Msa0126430:intron | 15.0% |
| !!! | TTAATTTTCCAAAAACATTA+AGG | - | chr1_3:55507476-55507495 | Msa0126430:intron | 15.0% |
| !!! | TTTTTCCTTTATGATTTTAA+AGG | - | chr1_3:55507513-55507532 | Msa0126430:CDS | 15.0% |
| !! | TATATATGATCATTATCATT+CGG | - | chr1_3:55508185-55508204 | Msa0126430:intron | 15.0% |
| !!! | AAAAAGATTATATTTTGTGT+TGG | + | chr1_3:55508921-55508940 | None:intergenic | 15.0% |
| !!! | TATCACATTTTTATTCAATA+AGG | - | chr1_3:55509430-55509449 | Msa0126430:intron | 15.0% |
| !! | TAACGTAATTCAAATTCATA+AGG | + | chr1_3:55505425-55505444 | None:intergenic | 20.0% |
| !! | TGTTCTTTCAAATTTCTAAA+TGG | - | chr1_3:55506000-55506019 | Msa0126430:intron | 20.0% |
| !!! | TTGTTTTCTCTTAATACTTT+TGG | - | chr1_3:55506112-55506131 | Msa0126430:intron | 20.0% |
| !!! | AGTGATGAAGATTTTAAATA+TGG | + | chr1_3:55506767-55506786 | None:intergenic | 20.0% |
| !! | GATATTCAAAAATTGGATAT+GGG | + | chr1_3:55507254-55507273 | None:intergenic | 20.0% |
| !! | TGATATTCAAAAATTGGATA+TGG | + | chr1_3:55507255-55507274 | None:intergenic | 20.0% |
| !! | GATAAGTGATATTCAAAAAT+TGG | + | chr1_3:55507261-55507280 | None:intergenic | 20.0% |
| !!! | AGTATGATTATATTTTCCTT+TGG | - | chr1_3:55507351-55507370 | Msa0126430:intron | 20.0% |
| !!! | GTATGATTATATTTTCCTTT+GGG | - | chr1_3:55507352-55507371 | Msa0126430:intron | 20.0% |
| !! | AATCACAATCATATAAAGTT+TGG | - | chr1_3:55507441-55507460 | Msa0126430:intron | 20.0% |
| !!! | ACATACCTTTAAAATCATAA+AGG | + | chr1_3:55507521-55507540 | None:intergenic | 20.0% |
| !! | CCAAAAATTAATTATTTACC+CGG | + | chr1_3:55507823-55507842 | None:intergenic | 20.0% |
| !! | TTGATTATGTATGATCAATA+GGG | - | chr1_3:55508401-55508420 | Msa0126430:intron | 20.0% |
| !!! | GTGTGACTAATATATTATTT+TGG | - | chr1_3:55509122-55509141 | Msa0126430:intron | 20.0% |
| !!! | TGACTAATATATTATTTTGG+AGG | - | chr1_3:55509125-55509144 | Msa0126430:intron | 20.0% |
| !!! | GACTAATATATTATTTTGGA+GGG | - | chr1_3:55509126-55509145 | Msa0126430:intron | 20.0% |
| !!! | ACTAATATATTATTTTGGAG+GGG | - | chr1_3:55509127-55509146 | Msa0126430:intron | 20.0% |
| !!! | TAGATATTTTCAAAAAACGT+TGG | - | chr1_3:55509181-55509200 | Msa0126430:intron | 20.0% |
| !!! | AGATATTTTCAAAAAACGTT+GGG | - | chr1_3:55509182-55509201 | Msa0126430:intron | 20.0% |
| !!! | CATTTTTATTCAATAAGGTT+TGG | - | chr1_3:55509435-55509454 | Msa0126430:intron | 20.0% |
| ! | AGACGGTTATAAAAATTGAA+AGG | + | chr1_3:55505628-55505647 | None:intergenic | 25.0% |
| ! | TTCATTGCATAATAACAAGA+CGG | + | chr1_3:55505645-55505664 | None:intergenic | 25.0% |
| ! | AACAAACACTGAATTATGAA+AGG | + | chr1_3:55505751-55505770 | None:intergenic | 25.0% |
| ! | TGTTTATATGTAATCTTTCC+AGG | - | chr1_3:55505875-55505894 | Msa0126430:intron | 25.0% |
| ! | GTTTATATGTAATCTTTCCA+GGG | - | chr1_3:55505876-55505895 | Msa0126430:intron | 25.0% |
| ! | TTTATATGTAATCTTTCCAG+GGG | - | chr1_3:55505877-55505896 | Msa0126430:intron | 25.0% |
| !! | GAAAGAACACAAATTTTACT+CGG | + | chr1_3:55505989-55506008 | None:intergenic | 25.0% |
| ! | CTTTCAAATTTCTAAATGGT+TGG | - | chr1_3:55506004-55506023 | Msa0126430:intron | 25.0% |
| ! | AAACTATCAAGCTTCAAAAA+TGG | - | chr1_3:55506050-55506069 | Msa0126430:intron | 25.0% |
| !!! | GTGTATTATTTTGGATGTTT+AGG | - | chr1_3:55506150-55506169 | Msa0126430:intron | 25.0% |
| !!! | TTATTTTGGATGTTTAGGTT+TGG | - | chr1_3:55506155-55506174 | Msa0126430:intron | 25.0% |
| !! | TGTTATTTGTGTTTCTTCTT+TGG | - | chr1_3:55506426-55506445 | Msa0126430:CDS | 25.0% |
| ! | ATCTTCATCACTATAACATA+TGG | - | chr1_3:55506775-55506794 | Msa0126430:intron | 25.0% |
| ! | TTGGACAAAAAACTCTTTAA+AGG | + | chr1_3:55507004-55507023 | None:intergenic | 25.0% |
| ! | AGTATCAGTAATGAGAAATT+TGG | + | chr1_3:55507023-55507042 | None:intergenic | 25.0% |
| ! | TTTGGAAAATTAAAATCCGA+TGG | + | chr1_3:55507469-55507488 | None:intergenic | 25.0% |
| !! | ACACTAATCCTTAATGTTTT+TGG | + | chr1_3:55507487-55507506 | None:intergenic | 25.0% |
| ! | TTTCTATTGTCAAAGAAGAA+GGG | - | chr1_3:55507540-55507559 | Msa0126430:CDS | 25.0% |
| !! | ACATTTAAAGCTGTTATTGA+TGG | - | chr1_3:55507759-55507778 | Msa0126430:CDS | 25.0% |
| !! | CCGGGTAAATAATTAATTTT+TGG | - | chr1_3:55507820-55507839 | Msa0126430:intron | 25.0% |
| ! | CTTCAACTGCATAAAATTAA+GGG | + | chr1_3:55507869-55507888 | None:intergenic | 25.0% |
| ! | TCTTCAACTGCATAAAATTA+AGG | + | chr1_3:55507870-55507889 | None:intergenic | 25.0% |
| !!! | ATGAACTAATTTGTTTCAGA+TGG | - | chr1_3:55507893-55507912 | Msa0126430:intron | 25.0% |
| !! | ACATTTTTGTTCATCATTTG+CGG | - | chr1_3:55508030-55508049 | Msa0126430:intron | 25.0% |
| ! | AACGAATAACTATTGTGTAA+CGG | - | chr1_3:55508325-55508344 | Msa0126430:intron | 25.0% |
| ! | CTATTGATCATACATAATCA+AGG | + | chr1_3:55508402-55508421 | None:intergenic | 25.0% |
| ! | CTTGATTATGTATGATCAAT+AGG | - | chr1_3:55508400-55508419 | Msa0126430:intron | 25.0% |
| ! | ATTGTAGTGAATAATGTACT+CGG | + | chr1_3:55508459-55508478 | None:intergenic | 25.0% |
| ! | ATTCTAAATTGCAATGAATG+AGG | + | chr1_3:55508774-55508793 | None:intergenic | 25.0% |
| !! | TTTGAAAAAACTAGTCCTTT+TGG | - | chr1_3:55508824-55508843 | Msa0126430:CDS | 25.0% |
| !! | TTGAAAAAACTAGTCCTTTT+GGG | - | chr1_3:55508825-55508844 | Msa0126430:CDS | 25.0% |
| ! | TTGAAGAAGAATCTCAAATA+TGG | + | chr1_3:55509006-55509025 | None:intergenic | 25.0% |
| !!! | CTAATATATTATTTTGGAGG+GGG | - | chr1_3:55509128-55509147 | Msa0126430:intron | 25.0% |
| !! | TTTTATTCAATAAGGTTTGG+AGG | - | chr1_3:55509438-55509457 | Msa0126430:intron | 25.0% |
| ! | TTTATTCAATAAGGTTTGGA+GGG | - | chr1_3:55509439-55509458 | Msa0126430:intron | 25.0% |
| ! | GGAAATAAAATAAGAGAATG+TGG | - | chr1_3:55509460-55509479 | Msa0126430:intron | 25.0% |
| ! | TTCTTGAGAAAACTTCTTTA+AGG | - | chr1_3:55509533-55509552 | Msa0126430:five_prime_UTR | 25.0% |
| TTAAAGATAAGAGAGAGAGT+TGG | + | chr1_3:55505357-55505376 | None:intergenic | 30.0% | |
| ATTGAAAGGAAGAAAAGAAG+AGG | + | chr1_3:55505614-55505633 | None:intergenic | 30.0% | |
| GCTTCAAAACACAAAATTCA+AGG | + | chr1_3:55505820-55505839 | None:intergenic | 30.0% | |
| !!! | ATTTTGTGTTTTGAAGCAGA+CGG | - | chr1_3:55505823-55505842 | Msa0126430:intron | 30.0% |
| ACAATAGACAGAAATTTGAG+TGG | + | chr1_3:55506348-55506367 | None:intergenic | 30.0% | |
| TGTCTATTGTTTAATCCATG+AGG | - | chr1_3:55506358-55506377 | Msa0126430:intron | 30.0% | |
| !!! | TCTAAGAAGTTTTTTCCTCA+TGG | + | chr1_3:55506376-55506395 | None:intergenic | 30.0% |
| TTCTTAGAGTAGTTAGTGTA+AGG | - | chr1_3:55506388-55506407 | Msa0126430:intron | 30.0% | |
| TTTCAGTCAAGATTTGTACT+TGG | - | chr1_3:55506533-55506552 | Msa0126430:intron | 30.0% | |
| TTTCTGAGTGAACAATGTAA+AGG | - | chr1_3:55506592-55506611 | Msa0126430:intron | 30.0% | |
| AACAATGTAAAGGTGACATA+TGG | - | chr1_3:55506602-55506621 | Msa0126430:intron | 30.0% | |
| ACGAATGGAAGAAATTCAAA+TGG | - | chr1_3:55507140-55507159 | Msa0126430:intron | 30.0% | |
| TCAAAAATTGGATATGGGAA+TGG | + | chr1_3:55507249-55507268 | None:intergenic | 30.0% | |
| !!! | TTATATTTTCCTTTGGGATG+AGG | - | chr1_3:55507358-55507377 | Msa0126430:intron | 30.0% |
| GTGATTACGCAAAACTAAAA+AGG | + | chr1_3:55507427-55507446 | None:intergenic | 30.0% | |
| ! | CATATAAAGTTTGGTTCCAT+CGG | - | chr1_3:55507450-55507469 | Msa0126430:intron | 30.0% |
| GTTTCTATTGTCAAAGAAGA+AGG | - | chr1_3:55507539-55507558 | Msa0126430:CDS | 30.0% | |
| CAGATACAGAAATGCAATTA+TGG | + | chr1_3:55507660-55507679 | None:intergenic | 30.0% | |
| ! | AAAGCTGTTATTGATGGTAA+AGG | - | chr1_3:55507765-55507784 | Msa0126430:CDS | 30.0% |
| TTTCAGATGGATAGAAATGA+TGG | - | chr1_3:55507906-55507925 | Msa0126430:CDS | 30.0% | |
| ! | ATTTTGCTTTCAGTTTCATC+TGG | - | chr1_3:55508264-55508283 | Msa0126430:intron | 30.0% |
| ! | TTTTGCTTTCAGTTTCATCT+GGG | - | chr1_3:55508265-55508284 | Msa0126430:intron | 30.0% |
| CTGAATGTCTCTATGATAAA+AGG | - | chr1_3:55508711-55508730 | Msa0126430:intron | 30.0% | |
| TCTCAAATATGGAAGCTAAT+TGG | + | chr1_3:55508995-55509014 | None:intergenic | 30.0% | |
| !! | ACAAATAATAAAAGTGCCCC+TGG | + | chr1_3:55505896-55505915 | None:intergenic | 35.0% |
| TCAAGCTTCAAAAATGGTGT+AGG | - | chr1_3:55506056-55506075 | Msa0126430:intron | 35.0% | |
| TGCATACTTATGATAGATGC+AGG | - | chr1_3:55506087-55506106 | Msa0126430:intron | 35.0% | |
| GCATACTTATGATAGATGCA+GGG | - | chr1_3:55506088-55506107 | Msa0126430:intron | 35.0% | |
| ! | CTCGTGATCGTGTATTATTT+TGG | - | chr1_3:55506141-55506160 | Msa0126430:intron | 35.0% |
| TGACTGAAAGAATCCTTGAT+CGG | + | chr1_3:55506522-55506541 | None:intergenic | 35.0% | |
| AAAGGTGACATATGGTTGTA+AGG | - | chr1_3:55506610-55506629 | Msa0126430:intron | 35.0% | |
| AAGGTGACATATGGTTGTAA+GGG | - | chr1_3:55506611-55506630 | Msa0126430:intron | 35.0% | |
| TCCTTATGTATCTGCAATTG+TGG | - | chr1_3:55506684-55506703 | Msa0126430:intron | 35.0% | |
| ACCACAATTGCAGATACATA+AGG | + | chr1_3:55506688-55506707 | None:intergenic | 35.0% | |
| ! | ATTGTTTCTTCGCAGTTTCA+AGG | - | chr1_3:55506729-55506748 | Msa0126430:intron | 35.0% |
| CTAATTGCTTACATTTGAGC+AGG | - | chr1_3:55506893-55506912 | Msa0126430:intron | 35.0% | |
| GAAAGATTTAGTCGACAAGA+TGG | - | chr1_3:55506968-55506987 | Msa0126430:CDS | 35.0% | |
| CTGATACTCTGTTTAATCCA+TGG | - | chr1_3:55507035-55507054 | Msa0126430:intron | 35.0% | |
| CTGCAATTTGTGTAGAAAGA+GGG | + | chr1_3:55507068-55507087 | None:intergenic | 35.0% | |
| ACTGCAATTTGTGTAGAAAG+AGG | + | chr1_3:55507069-55507088 | None:intergenic | 35.0% | |
| ! | TGATGATGTCGTTCATATAG+CGG | - | chr1_3:55507165-55507184 | Msa0126430:intron | 35.0% |
| TGTGAAAACTGAAATCACTC+AGG | + | chr1_3:55507224-55507243 | None:intergenic | 35.0% | |
| !! | TGAGCTTGTTTTCAATGACT+AGG | - | chr1_3:55507288-55507307 | Msa0126430:CDS | 35.0% |
| ATCATACTCAGCAACTATGT+CGG | + | chr1_3:55507339-55507358 | None:intergenic | 35.0% | |
| GGTATTGTACATACTTCTCA+GGG | + | chr1_3:55507406-55507425 | None:intergenic | 35.0% | |
| ! | AGGTATTGTACATACTTCTC+AGG | + | chr1_3:55507407-55507426 | None:intergenic | 35.0% |
| AGCACTTGATCCTAAAAAGT+CGG | - | chr1_3:55507580-55507599 | Msa0126430:intron | 35.0% | |
| ! | TGATGAACTTCCGACTTTTT+AGG | + | chr1_3:55507593-55507612 | None:intergenic | 35.0% |
| TTCGATAGTACTCACATCTA+TGG | - | chr1_3:55507705-55507724 | Msa0126430:CDS | 35.0% | |
| TTAATTATTTACCCGGTGCA+AGG | + | chr1_3:55507816-55507835 | None:intergenic | 35.0% | |
| TTGGCAATGACAATTCAATG+TGG | - | chr1_3:55507839-55507858 | Msa0126430:intron | 35.0% | |
| ! | ATCGCACTGATGAAACAAAA+TGG | + | chr1_3:55507987-55508006 | None:intergenic | 35.0% |
| TTTGCTTTCAGTTTCATCTG+GGG | - | chr1_3:55508266-55508285 | Msa0126430:intron | 35.0% | |
| !! | GTCAGAAGTTTTGTCAATCA+TGG | + | chr1_3:55508380-55508399 | None:intergenic | 35.0% |
| GGTGATCGAACAAAAAATGT+TGG | - | chr1_3:55508422-55508441 | Msa0126430:intron | 35.0% | |
| ! | TAAACTGTTACTTGCATTGC+AGG | - | chr1_3:55508605-55508624 | Msa0126430:CDS | 35.0% |
| TTCAGATTCATCTCAGGAAA+AGG | - | chr1_3:55508629-55508648 | Msa0126430:CDS | 35.0% | |
| TAAAAGGACATTCATGTTGC+TGG | - | chr1_3:55508727-55508746 | Msa0126430:intron | 35.0% | |
| AGGATGAGTACTAGTAGTAT+TGG | + | chr1_3:55508754-55508773 | None:intergenic | 35.0% | |
| ! | AAAAAACTAGTCCTTTTGGG+TGG | - | chr1_3:55508828-55508847 | Msa0126430:CDS | 35.0% |
| TTTCAAAAAACGTTGGGTCA+AGG | - | chr1_3:55509188-55509207 | Msa0126430:intron | 35.0% | |
| GGTTAAGGAGGATAAATGTT+GGG | - | chr1_3:55509212-55509231 | Msa0126430:intron | 35.0% | |
| ! | TGCACATGTTGCTATTGAAA+TGG | + | chr1_3:55509243-55509262 | None:intergenic | 35.0% |
| CAATTGAGACAAAGACACTT+TGG | - | chr1_3:55509364-55509383 | Msa0126430:intron | 35.0% | |
| GATGACTTGATATCTGGCAT+TGG | + | chr1_3:55505573-55505592 | None:intergenic | 40.0% | |
| ATATCAAGTCATCACCTGCT+AGG | - | chr1_3:55505580-55505599 | Msa0126430:three_prime_UTR | 40.0% | |
| TATCAAGTCATCACCTGCTA+GGG | - | chr1_3:55505581-55505600 | Msa0126430:three_prime_UTR | 40.0% | |
| !!! | TGTTTTGAAGCAGACGGTTT+TGG | - | chr1_3:55505829-55505848 | Msa0126430:intron | 40.0% |
| ATCCTCACAAAGCTACAAAG+AGG | - | chr1_3:55505940-55505959 | Msa0126430:intron | 40.0% | |
| !! | TACCTCTTTGTAGCTTTGTG+AGG | + | chr1_3:55505945-55505964 | None:intergenic | 40.0% |
| TTGTTTAGTAGAAGCAGTGC+AGG | - | chr1_3:55506196-55506215 | Msa0126430:intron | 40.0% | |
| CCATTCTTCGACATCCATAA+AGG | + | chr1_3:55506285-55506304 | None:intergenic | 40.0% | |
| CCTTTATGGATGTCGAAGAA+TGG | - | chr1_3:55506282-55506301 | Msa0126430:intron | 40.0% | |
| TGTCATGGTTCCTTTCTCTT+GGG | + | chr1_3:55506468-55506487 | None:intergenic | 40.0% | |
| TTGTCATGGTTCCTTTCTCT+TGG | + | chr1_3:55506469-55506488 | None:intergenic | 40.0% | |
| AGGCAAACTTCAGATTGTCA+TGG | + | chr1_3:55506483-55506502 | None:intergenic | 40.0% | |
| AGGTAAGTAAAGTCCGATCA+AGG | - | chr1_3:55506506-55506525 | Msa0126430:intron | 40.0% | |
| ! | ATGTTCTGCGACTCTGATTT+TGG | - | chr1_3:55506643-55506662 | Msa0126430:intron | 40.0% |
| GCTTACATTTGAGCAGGTTA+AGG | - | chr1_3:55506899-55506918 | Msa0126430:intron | 40.0% | |
| AGTCGACAAGATGGTCAAAA+AGG | - | chr1_3:55506977-55506996 | Msa0126430:intron | 40.0% | |
| ! | ATGATGGAAATGTCGACGAA+TGG | - | chr1_3:55507125-55507144 | Msa0126430:CDS | 40.0% |
| !! | GCTTGTTTTCAATGACTAGG+TGG | - | chr1_3:55507291-55507310 | Msa0126430:CDS | 40.0% |
| TCATACTCAGCAACTATGTC+GGG | + | chr1_3:55507338-55507357 | None:intergenic | 40.0% | |
| ATTGTACATACTTCTCAGGG+TGG | + | chr1_3:55507403-55507422 | None:intergenic | 40.0% | |
| !!! | GACTTTTTAGGATCAAGTGC+TGG | + | chr1_3:55507581-55507600 | None:intergenic | 40.0% |
| ! | ATACTTTTCGTTGTGCTCAC+AGG | - | chr1_3:55507733-55507752 | Msa0126430:CDS | 40.0% |
| ! | ATTGATGGTAAAGGCTGTGA+TGG | - | chr1_3:55507774-55507793 | Msa0126430:CDS | 40.0% |
| TTGTGTCTGGTACATGATTC+AGG | - | chr1_3:55507957-55507976 | Msa0126430:CDS | 40.0% | |
| ! | CATCTGGGGTTGTTAAATAG+TGG | - | chr1_3:55508280-55508299 | Msa0126430:intron | 40.0% |
| !! | TTCCTGCAACTTCTAGAGTT+TGG | - | chr1_3:55508887-55508906 | Msa0126430:intron | 40.0% |
| GGTAAGGAGACTTTCTTACA+AGG | - | chr1_3:55509155-55509174 | Msa0126430:intron | 40.0% | |
| CGGTTAAGGAGGATAAATGT+TGG | - | chr1_3:55509211-55509230 | Msa0126430:intron | 40.0% | |
| ! | ACACTTTGGAGAGTCTCAAA+GGG | - | chr1_3:55509378-55509397 | Msa0126430:intron | 40.0% |
| ! | AGAGAGAGTTGGTTGACGAA+AGG | + | chr1_3:55505346-55505365 | None:intergenic | 45.0% |
| GCAGGTGATGACTTGATATC+TGG | + | chr1_3:55505579-55505598 | None:intergenic | 45.0% | |
| ! | AGTCTCGAGTACTTCGAGTT+TGG | - | chr1_3:55506251-55506270 | Msa0126430:CDS | 45.0% |
| ! | GTTTGGAGCTGAGACCTTTA+TGG | - | chr1_3:55506268-55506287 | Msa0126430:intron | 45.0% |
| ! | CAATCTGAAGTTTGCCTGAG+AGG | - | chr1_3:55506486-55506505 | Msa0126430:intron | 45.0% |
| TCGGACTTTACTTACCTCTC+AGG | + | chr1_3:55506503-55506522 | None:intergenic | 45.0% | |
| ATCGCAAACAAGCTGGTTGA+TGG | + | chr1_3:55506930-55506949 | None:intergenic | 45.0% | |
| ! | ATCAACCAGCTTGTTTGCGA+TGG | - | chr1_3:55506929-55506948 | Msa0126430:CDS | 45.0% |
| AGAAAGAGGGTCATGATCCA+TGG | + | chr1_3:55507055-55507074 | None:intergenic | 45.0% | |
| ! | GTGACGCTTTTCCACTATGA+TGG | - | chr1_3:55507109-55507128 | Msa0126430:CDS | 45.0% |
| CGTCGACATTTCCATCATAG+TGG | + | chr1_3:55507123-55507142 | None:intergenic | 45.0% | |
| CATATAGCGGTAGTCGATCA+AGG | - | chr1_3:55507178-55507197 | Msa0126430:intron | 45.0% | |
| ! | GGTGGAAGTTTTCTACTCCT+AGG | + | chr1_3:55507385-55507404 | None:intergenic | 45.0% |
| CATCATCAAATTACCGCACG+TGG | - | chr1_3:55507608-55507627 | Msa0126430:intron | 45.0% | |
| ATCAAATTACCGCACGTGGT+AGG | - | chr1_3:55507612-55507631 | Msa0126430:intron | 45.0% | |
| ATTATTTACCCGGTGCAAGG+AGG | + | chr1_3:55507813-55507832 | None:intergenic | 45.0% | |
| ACGCAGCTCTTGAGAAAACA+GGG | + | chr1_3:55507933-55507952 | None:intergenic | 45.0% | |
| GCAGGTTTCAGATTCATCTC+AGG | - | chr1_3:55508623-55508642 | Msa0126430:CDS | 45.0% | |
| CTAAGCATAAGCCACCCAAA+AGG | + | chr1_3:55508842-55508861 | None:intergenic | 45.0% | |
| ! | CACCAAACTCTAGAAGTTGC+AGG | + | chr1_3:55508892-55508911 | None:intergenic | 45.0% |
| !!! | TATTATTTTGGAGGGGGTGC+AGG | - | chr1_3:55509134-55509153 | Msa0126430:intron | 45.0% |
| CAAAAAACGTTGGGTCAAGG+CGG | - | chr1_3:55509191-55509210 | Msa0126430:intron | 45.0% | |
| ! | GACACTTTGGAGAGTCTCAA+AGG | - | chr1_3:55509377-55509396 | Msa0126430:intron | 45.0% |
| !! | TCTCAAAGGGCATCATGGTA+TGG | - | chr1_3:55509391-55509410 | Msa0126430:intron | 45.0% |
| TCATGGTATGGTTCAGTCAG+TGG | - | chr1_3:55509403-55509422 | Msa0126430:intron | 45.0% | |
| AGTTGGTTGACGAAAGGAGC+GGG | + | chr1_3:55505340-55505359 | None:intergenic | 50.0% | |
| ! | GAGTTGGTTGACGAAAGGAG+CGG | + | chr1_3:55505341-55505360 | None:intergenic | 50.0% |
| AAGAGGTTACGTACCCTAGC+AGG | + | chr1_3:55505597-55505616 | None:intergenic | 50.0% | |
| GGTAACGCTTCACTTCCACT+AGG | + | chr1_3:55506222-55506241 | None:intergenic | 50.0% | |
| ! | TGGAAGTGAAGCGTTACCTC+AGG | - | chr1_3:55506224-55506243 | Msa0126430:intron | 50.0% |
| ! | GGAAGTGAAGCGTTACCTCA+GGG | - | chr1_3:55506225-55506244 | Msa0126430:intron | 50.0% |
| GTACTCGAGACTATACCCTG+AGG | + | chr1_3:55506243-55506262 | None:intergenic | 50.0% | |
| CTTCTTTGGTCGTAACCCTC+CGG | - | chr1_3:55506440-55506459 | Msa0126430:CDS | 50.0% | |
| GGTTCCTTTCTCTTGGGAAC+CGG | + | chr1_3:55506462-55506481 | None:intergenic | 50.0% | |
| AACTGCCATCGCAAACAAGC+TGG | + | chr1_3:55506937-55506956 | None:intergenic | 50.0% | |
| ! | AGCTTGTTTGCGATGGCAGT+TGG | - | chr1_3:55506936-55506955 | Msa0126430:CDS | 50.0% |
| CGGTAGTCGATCAAGGCAAA+TGG | - | chr1_3:55507185-55507204 | Msa0126430:intron | 50.0% | |
| !! | TTCCTTTGGGATGAGGACCT+AGG | - | chr1_3:55507365-55507384 | Msa0126430:intron | 50.0% |
| AAATTACCGCACGTGGTAGG+AGG | - | chr1_3:55507615-55507634 | Msa0126430:intron | 50.0% | |
| ! | TTTTGACCTCCTACCACGTG+CGG | + | chr1_3:55507624-55507643 | None:intergenic | 50.0% |
| ! | GTAGGAGGTCAAAAGTGCAC+AGG | - | chr1_3:55507630-55507649 | Msa0126430:intron | 50.0% |
| ! | CTTTTCGTTGTGCTCACAGG+AGG | - | chr1_3:55507736-55507755 | Msa0126430:CDS | 50.0% |
| CGCAGCTCTTGAGAAAACAG+GGG | + | chr1_3:55507932-55507951 | None:intergenic | 50.0% | |
| CACGCAGCTCTTGAGAAAAC+AGG | + | chr1_3:55507934-55507953 | None:intergenic | 50.0% | |
| ! | CTGTTTTCTCAAGAGCTGCG+TGG | - | chr1_3:55507932-55507951 | Msa0126430:CDS | 50.0% |
| AGAACGACTTGATCCATGCG+TGG | - | chr1_3:55508063-55508082 | Msa0126430:intron | 50.0% | |
| GAACGACTTGATCCATGCGT+GGG | - | chr1_3:55508064-55508083 | Msa0126430:intron | 50.0% | |
| AACGACTTGATCCATGCGTG+GGG | - | chr1_3:55508065-55508084 | Msa0126430:intron | 50.0% | |
| TGGGGACTAGATATGCAGCT+TGG | - | chr1_3:55508083-55508102 | Msa0126430:intron | 50.0% | |
| CACTACAATCGTCCCACTCT+TGG | - | chr1_3:55508470-55508489 | Msa0126430:intron | 50.0% | |
| TACAATCGTCCCACTCTTGG+AGG | - | chr1_3:55508473-55508492 | Msa0126430:intron | 50.0% | |
| TTGTCTGTGCCTCCAAGAGT+GGG | + | chr1_3:55508485-55508504 | None:intergenic | 50.0% | |
| !! | GAGAGTCTCAAAGGGCATCA+TGG | - | chr1_3:55509386-55509405 | Msa0126430:intron | 50.0% |
| GGAGCGGGAAGCGAAAATCA+CGG | + | chr1_3:55505325-55505344 | None:intergenic | 55.0% | |
| TAGAAGCAGTGCAGGCCTAG+TGG | - | chr1_3:55506204-55506223 | Msa0126430:intron | 55.0% | |
| CCTTTCTCTTGGGAACCGGA+GGG | + | chr1_3:55506458-55506477 | None:intergenic | 55.0% | |
| TCCTTTCTCTTGGGAACCGG+AGG | + | chr1_3:55506459-55506478 | None:intergenic | 55.0% | |
| CTCCTAGGTCCTCATCCCAA+AGG | + | chr1_3:55507370-55507389 | None:intergenic | 55.0% | |
| GCATATCTAGTCCCCACGCA+TGG | + | chr1_3:55508079-55508098 | None:intergenic | 55.0% | |
| GCAGCTTGGCTACTGTTCTC+AGG | - | chr1_3:55508097-55508116 | Msa0126430:intron | 55.0% | |
| GTTGTCTGTGCCTCCAAGAG+TGG | + | chr1_3:55508486-55508505 | None:intergenic | 55.0% | |
| !! | TTTTGGAGGGGGTGCAGGTA+AGG | - | chr1_3:55509139-55509158 | Msa0126430:intron | 55.0% |
| ACGTTGGGTCAAGGCGGTTA+AGG | - | chr1_3:55509197-55509216 | Msa0126430:intron | 55.0% | |
| TTGGGTCAAGGCGGTTAAGG+AGG | - | chr1_3:55509200-55509219 | Msa0126430:intron | 55.0% | |
| CCCTCCGGTTCCCAAGAGAA+AGG | - | chr1_3:55506455-55506474 | Msa0126430:CDS | 60.0% | |
| AGCACAGCTCCTCCTTGCAC+CGG | - | chr1_3:55507801-55507820 | Msa0126430:intron | 60.0% | |
| GCACAGCTCCTCCTTGCACC+GGG | - | chr1_3:55507802-55507821 | Msa0126430:intron | 65.0% | |
| GAGCTGCGTGGCGTTGTGTC+TGG | - | chr1_3:55507944-55507963 | Msa0126430:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55505295 | 55509608 | 55505295 | ID=Msa0126430;Name=Msa0126430 |
| chr1_3 | mRNA | 55505295 | 55509608 | 55505295 | ID=Msa0126430-mRNA-1;Parent=Msa0126430;Name=Msa0126430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=153|0.93|0.93|1|0.86|0.75|16|321|388 |
| chr1_3 | exon | 55505295 | 55505331 | 55505295 | ID=Msa0126430-mRNA-1:exon:17340;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55505368 | 55505747 | 55505368 | ID=Msa0126430-mRNA-1:exon:17339;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55506238 | 55506276 | 55506238 | ID=Msa0126430-mRNA-1:exon:17338;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55506389 | 55506481 | 55506389 | ID=Msa0126430-mRNA-1:exon:17337;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55506785 | 55506838 | 55506785 | ID=Msa0126430-mRNA-1:exon:17336;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55506925 | 55506991 | 55506925 | ID=Msa0126430-mRNA-1:exon:17335;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55507080 | 55507148 | 55507080 | ID=Msa0126430-mRNA-1:exon:17334;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55507252 | 55507368 | 55507252 | ID=Msa0126430-mRNA-1:exon:17333;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55507492 | 55507593 | 55507492 | ID=Msa0126430-mRNA-1:exon:17332;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55507697 | 55507815 | 55507697 | ID=Msa0126430-mRNA-1:exon:17331;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55507905 | 55507988 | 55507905 | ID=Msa0126430-mRNA-1:exon:17330;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55508580 | 55508696 | 55508580 | ID=Msa0126430-mRNA-1:exon:17329;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55508794 | 55508853 | 55508794 | ID=Msa0126430-mRNA-1:exon:17328;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55508942 | 55509061 | 55508942 | ID=Msa0126430-mRNA-1:exon:17327;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55509301 | 55509375 | 55509301 | ID=Msa0126430-mRNA-1:exon:17326;Parent=Msa0126430-mRNA-1 |
| chr1_3 | exon | 55509501 | 55509608 | 55509501 | ID=Msa0126430-mRNA-1:exon:17325;Parent=Msa0126430-mRNA-1 |
| chr1_3 | five_prime_UTR | 55509501 | 55509608 | 55509501 | ID=Msa0126430-mRNA-1:five_prime_utr;Parent=Msa0126430-mRNA-1 |
| chr1_3 | five_prime_UTR | 55509331 | 55509375 | 55509331 | ID=Msa0126430-mRNA-1:five_prime_utr;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55509301 | 55509330 | 55509301 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55508942 | 55509061 | 55508942 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55508794 | 55508853 | 55508794 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55508580 | 55508696 | 55508580 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55507905 | 55507988 | 55507905 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55507697 | 55507815 | 55507697 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55507492 | 55507593 | 55507492 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55507252 | 55507368 | 55507252 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55507080 | 55507148 | 55507080 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55506925 | 55506991 | 55506925 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55506785 | 55506838 | 55506785 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55506389 | 55506481 | 55506389 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55506238 | 55506276 | 55506238 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | CDS | 55505652 | 55505747 | 55505652 | ID=Msa0126430-mRNA-1:cds;Parent=Msa0126430-mRNA-1 |
| chr1_3 | three_prime_UTR | 55505368 | 55505651 | 55505368 | ID=Msa0126430-mRNA-1:three_prime_utr;Parent=Msa0126430-mRNA-1 |
| chr1_3 | three_prime_UTR | 55505295 | 55505331 | 55505295 | ID=Msa0126430-mRNA-1:three_prime_utr;Parent=Msa0126430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
