AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143640 MtrunA17_Chr4g0060271 95.948 617 20 2 1 616 1 613 0.0 1069
Msa0143640 MtrunA17_Chr7g0216891 40.071 564 263 19 68 599 38 558 2.38e-95 304
Msa0143640 MtrunA17_Chr2g0322391 34.711 484 217 18 59 527 157 556 3.60e-56 200
Msa0143640 MtrunA17_Chr3g0099641 36.158 354 152 9 64 402 87 381 3.72e-52 186
Msa0143640 MtrunA17_Chr4g0051181 35.940 537 260 22 1 526 10 473 3.96e-51 184
Msa0143640 MtrunA17_Chr2g0288871 35.417 480 196 16 70 527 143 530 3.04e-49 180
Msa0143640 MtrunA17_Chr4g0075201 37.798 336 154 8 70 405 120 400 6.74e-49 177
Msa0143640 MtrunA17_Chr7g0270831 71.845 103 29 0 233 335 190 292 3.63e-47 171
Msa0143640 MtrunA17_Chr2g0302391 49.143 175 77 3 225 399 181 343 1.96e-43 161
Msa0143640 MtrunA17_Chr4g0025061 51.948 154 61 3 244 397 345 485 8.62e-42 160
Msa0143640 MtrunA17_Chr4g0025051 63.810 105 38 0 244 348 320 424 1.34e-40 156
Msa0143640 MtrunA17_Chr4g0024391 28.485 495 239 15 82 527 12 440 2.57e-37 145
Msa0143640 MtrunA17_Chr4g0001361 48.214 112 53 3 242 351 143 251 3.93e-25 106
Msa0143640 MtrunA17_Chr1g0150281 50.000 94 47 0 242 335 123 216 1.07e-24 104
Msa0143640 MtrunA17_Chr1g0150271 45.918 98 51 1 240 335 80 177 1.20e-24 103
Msa0143640 MtrunA17_Chr3g0136961 63.333 60 22 0 258 317 137 196 2.55e-24 103
Msa0143640 MtrunA17_Chr5g0432161 45.133 113 54 3 213 321 374 482 4.23e-24 107
Msa0143640 MtrunA17_Chr3g0106491 52.564 78 36 1 242 319 348 424 1.42e-23 104
Msa0143640 MtrunA17_Chr3g0106491 49.206 63 30 2 259 321 198 258 3.50e-13 72.4
Msa0143640 MtrunA17_Chr5g0445311 34.637 179 99 4 157 335 279 439 8.18e-23 102
Msa0143640 MtrunA17_Chr5g0445311 50.820 61 28 2 259 319 200 258 1.29e-11 67.4
Msa0143640 MtrunA17_Chr4g0004911 50.633 79 38 1 242 320 319 396 1.02e-22 102
Msa0143640 MtrunA17_Chr4g0004911 48.333 60 30 1 260 319 185 243 7.42e-13 71.2
Msa0143640 MtrunA17_Chr7g0243891 52.564 78 36 1 242 319 357 433 1.70e-22 101
Msa0143640 MtrunA17_Chr7g0243891 51.613 62 28 2 260 321 217 276 4.78e-12 68.9
Msa0143640 MtrunA17_Chr3g0101131 51.899 79 37 1 241 319 397 474 3.35e-22 100
Msa0143640 MtrunA17_Chr3g0101131 49.180 61 29 2 259 319 243 301 2.06e-11 67.0
Msa0143640 MtrunA17_Chr5g0418191 36.842 171 101 3 182 350 245 410 3.43e-22 99.8
Msa0143640 MtrunA17_Chr5g0418191 50.746 67 30 3 253 319 146 209 1.24e-13 73.6
Msa0143640 MtrunA17_Chr2g0333851 43.478 92 41 1 239 319 138 229 3.52e-22 97.8
Msa0143640 MtrunA17_Chr7g0218081 42.478 113 60 2 226 334 373 484 5.63e-22 99.8
Msa0143640 MtrunA17_Chr7g0218081 42.222 90 49 3 230 319 200 286 3.54e-12 69.3
Msa0143640 MtrunA17_Chr3g0079691 46.392 97 47 2 227 319 459 554 8.54e-22 100
Msa0143640 MtrunA17_Chr3g0079691 39.000 100 56 4 220 319 244 338 2.78e-12 69.7
Msa0143640 MtrunA17_Chr4g0042831 50.000 80 39 1 244 323 263 341 2.36e-21 96.7
Msa0143640 MtrunA17_Chr4g0042831 30.909 165 101 5 259 421 145 298 6.51e-12 67.8
Msa0143640 MtrunA17_Chr7g0263531 50.649 77 37 1 247 323 349 424 2.54e-21 97.1
Msa0143640 MtrunA17_Chr7g0263531 45.679 81 41 3 254 334 185 262 1.61e-13 73.2
Msa0143640 MtrunA17_Chr7g0249311 50.000 78 38 1 242 319 375 451 3.43e-21 98.2
Msa0143640 MtrunA17_Chr7g0249311 48.485 66 32 2 257 322 177 240 2.98e-11 66.6
Msa0143640 MtrunA17_Chr7g0249301 52.703 74 34 1 246 319 279 351 5.09e-21 95.5
Msa0143640 MtrunA17_Chr7g0249301 49.206 63 30 2 257 319 60 120 2.98e-11 65.5
Msa0143640 MtrunA17_Chr1g0194481 40.000 125 69 4 226 348 128 248 1.17e-20 93.6
Msa0143640 MtrunA17_Chr7g0270191 39.167 120 60 3 226 337 104 218 2.01e-20 92.0
Msa0143640 MtrunA17_Chr4g0074001 51.250 80 38 1 241 320 341 419 4.39e-20 94.0
Msa0143640 MtrunA17_Chr5g0419241 77.778 45 10 0 243 287 61 105 5.54e-20 85.5
Msa0143640 MtrunA17_Chr8g0335811 46.988 83 43 1 235 317 130 211 7.71e-20 89.0
Msa0143640 MtrunA17_Chr4g0051881 39.423 104 62 1 246 349 165 267 8.03e-20 91.3
Msa0143640 MtrunA17_Chr5g0447701 45.882 85 45 1 244 328 237 320 1.61e-19 91.3
Msa0143640 MtrunA17_Chr2g0294231 48.052 77 39 1 243 319 187 262 3.42e-19 90.1
Msa0143640 MtrunA17_Chr3g0129361 47.368 76 39 1 242 317 127 201 4.12e-19 86.7
Msa0143640 MtrunA17_Chr4g0068541 47.436 78 40 1 243 320 192 268 7.58e-19 89.4
Msa0143640 MtrunA17_Chr1g0150801 49.315 73 36 1 244 316 87 158 9.19e-19 84.0
Msa0143640 MtrunA17_Chr5g0401821 55.224 67 28 1 254 320 196 260 1.94e-18 85.9
Msa0143640 MtrunA17_Chr5g0443131 48.649 74 37 1 246 319 144 216 2.32e-18 86.3
Msa0143640 MtrunA17_Chr4g0053281 57.627 59 25 0 260 318 267 325 2.69e-18 86.7
Msa0143640 MtrunA17_Chr8g0379461 55.385 65 29 0 259 323 76 140 2.91e-18 84.7
Msa0143640 MtrunA17_Chr5g0418781 38.462 117 64 3 221 336 92 201 3.08e-18 85.5
Msa0143640 MtrunA17_Chr1g0188941 43.590 78 43 1 242 319 34 110 3.41e-18 80.9
Msa0143640 MtrunA17_Chr7g0270051 52.703 74 32 1 259 332 53 123 3.86e-18 84.7
Msa0143640 MtrunA17_Chr7g0224801 48.571 70 35 1 249 318 83 151 6.32e-18 81.6
Msa0143640 MtrunA17_Chr8g0383351 46.753 77 39 2 242 317 142 217 1.23e-17 82.8
Msa0143640 MtrunA17_Chr8g0383251 42.857 77 43 1 246 322 95 170 1.31e-17 81.3
Msa0143640 MtrunA17_Chr2g0319961 49.367 79 40 0 250 328 71 149 1.35e-17 83.2
Msa0143640 MtrunA17_Chr2g0289181 41.818 110 53 3 247 347 4 111 3.95e-17 81.3
Msa0143640 MtrunA17_Chr3g0129321 46.753 77 40 1 246 322 105 180 4.74e-17 80.1
Msa0143640 MtrunA17_Chr7g0228941 48.571 70 33 2 248 316 42 109 9.22e-17 77.0
Msa0143640 MtrunA17_Chr1g0184691 53.448 58 27 0 260 317 294 351 9.60e-17 82.4
Msa0143640 MtrunA17_Chr1g0147881 52.542 59 28 0 260 318 263 321 1.05e-16 82.0
Msa0143640 MtrunA17_Chr2g0284321 53.333 60 28 0 260 319 36 95 1.35e-16 79.3
Msa0143640 MtrunA17_Chr8g0386241 34.615 104 64 2 225 325 66 168 1.73e-16 77.8
Msa0143640 MtrunA17_Chr7g0248721 49.333 75 36 2 242 316 124 196 3.15e-16 78.2
Msa0143640 MtrunA17_Chr3g0139021 40.870 115 48 4 220 316 259 371 4.19e-16 80.9
Msa0143640 MtrunA17_Chr2g0293481 46.667 75 40 0 260 334 268 342 5.31e-16 81.3
Msa0143640 MtrunA17_Chr6g0485431 47.368 76 38 2 246 320 141 215 1.30e-15 79.0
Msa0143640 MtrunA17_Chr7g0238921 58.621 58 23 1 259 316 124 180 4.24e-15 76.6
Msa0143640 MtrunA17_Chr8g0348311 47.887 71 37 0 259 329 155 225 7.15e-15 76.3
Msa0143640 MtrunA17_Chr4g0071521 50.000 64 30 1 254 317 242 303 8.00e-15 75.9
Msa0143640 MtrunA17_Chr7g0248691 39.560 91 52 1 242 329 134 224 1.36e-14 75.5
Msa0143640 MtrunA17_Chr8g0387501 42.466 73 42 0 257 329 127 199 5.52e-14 72.8
Msa0143640 MtrunA17_Chr5g0432071 42.308 78 43 2 259 336 104 179 5.81e-14 71.2
Msa0143640 MtrunA17_Chr1g0202461 35.455 110 66 2 225 329 222 331 1.14e-13 73.2
Msa0143640 MtrunA17_Chr1g0189391 38.298 94 54 3 227 317 63 155 1.24e-12 69.3
Msa0143640 MtrunA17_Chr8g0387981 35.172 145 73 5 179 314 57 189 1.29e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143640 AT5G15130.1 43.002 493 197 17 63 527 28 464 9.01e-89 286
Msa0143640 AT5G15130.2 43.096 478 188 18 78 527 1 422 4.33e-85 275
Msa0143640 AT1G18860.1 38.421 570 235 19 7 527 8 510 2.26e-79 261
Msa0143640 AT1G69810.1 38.788 330 168 9 68 394 23 321 2.86e-57 198
Msa0143640 AT1G68150.1 81.633 98 18 0 243 340 219 316 4.63e-53 186
Msa0143640 AT4G04450.2 37.921 356 152 12 67 394 8 322 8.83e-53 187
Msa0143640 AT4G04450.1 38.202 356 151 12 67 394 102 416 7.67e-52 187
Msa0143640 AT1G62300.1 31.979 566 271 19 5 544 76 553 9.22e-47 173
Msa0143640 AT1G69810.2 38.776 294 146 9 104 394 1 263 4.10e-46 166
Msa0143640 AT4G01720.1 77.778 81 18 0 239 319 219 299 2.30e-39 151
Msa0143640 AT4G31800.2 54.321 81 37 0 257 337 109 189 2.70e-26 108
Msa0143640 AT4G31800.1 54.321 81 37 0 257 337 174 254 4.66e-26 109
Msa0143640 AT2G25000.2 65.079 63 22 0 257 319 101 163 9.39e-25 103
Msa0143640 AT2G25000.4 65.079 63 22 0 257 319 101 163 9.39e-25 103
Msa0143640 AT2G25000.3 65.079 63 22 0 257 319 123 185 1.62e-24 103
Msa0143640 AT2G25000.1 65.079 63 22 0 257 319 144 206 1.82e-24 103
Msa0143640 AT1G80840.1 61.538 65 25 0 255 319 142 206 2.84e-24 103
Msa0143640 AT2G38470.1 37.903 124 76 1 208 331 311 433 1.72e-23 105
Msa0143640 AT2G38470.1 51.667 60 27 2 260 319 185 242 1.03e-12 71.2
Msa0143640 AT1G29860.1 36.364 154 85 4 243 396 120 260 2.02e-23 101
Msa0143640 AT5G56270.1 54.545 77 34 1 243 319 471 546 4.05e-23 104
Msa0143640 AT5G56270.1 51.667 60 27 2 260 319 274 331 8.96e-12 68.6
Msa0143640 AT4G26640.5 44.898 98 53 1 227 324 173 269 5.44e-23 101
Msa0143640 AT4G26640.5 39.773 88 49 3 251 336 25 110 1.17e-11 67.4
Msa0143640 AT4G26640.6 44.898 98 53 1 227 324 173 269 5.44e-23 101
Msa0143640 AT4G26640.6 39.773 88 49 3 251 336 25 110 1.17e-11 67.4
Msa0143640 AT4G26640.4 44.898 98 53 1 227 324 173 269 5.44e-23 101
Msa0143640 AT4G26640.4 39.773 88 49 3 251 336 25 110 1.17e-11 67.4
Msa0143640 AT4G26640.3 44.898 98 53 1 227 324 173 269 5.44e-23 101
Msa0143640 AT4G26640.3 39.773 88 49 3 251 336 25 110 1.17e-11 67.4
Msa0143640 AT4G26640.7 44.898 98 53 1 227 324 309 405 1.18e-22 102
Msa0143640 AT4G26640.7 46.479 71 34 3 251 319 161 229 1.67e-11 67.4
Msa0143640 AT4G26640.1 44.898 98 53 1 227 324 277 373 1.38e-22 102
Msa0143640 AT4G26640.1 46.479 71 34 3 251 319 129 197 1.75e-11 67.4
Msa0143640 AT4G26640.2 44.898 98 53 1 227 324 349 445 1.98e-22 102
Msa0143640 AT4G26640.2 46.479 71 34 3 251 319 201 269 1.98e-11 67.4
Msa0143640 AT2G03340.1 41.667 108 62 1 217 324 373 479 2.87e-22 101
Msa0143640 AT2G03340.1 50.746 67 30 3 253 319 245 308 4.20e-14 75.9
Msa0143640 AT4G30935.1 44.954 109 57 2 212 320 286 391 6.46e-22 99.8
Msa0143640 AT1G13960.1 44.792 96 46 2 230 319 374 468 8.71e-22 99.8
Msa0143640 AT1G13960.1 49.254 67 31 3 253 319 224 287 6.79e-13 72.0
Msa0143640 AT1G13960.2 52.703 74 34 1 246 319 243 315 1.53e-21 97.1
Msa0143640 AT1G13960.2 49.254 67 31 3 253 319 71 134 7.85e-13 70.9
Msa0143640 AT5G07100.2 51.282 78 37 1 242 319 124 200 1.54e-21 94.0
Msa0143640 AT5G07100.2 42.105 76 43 1 257 332 22 96 4.18e-12 66.6
Msa0143640 AT5G07100.4 51.282 78 37 1 242 319 124 200 1.54e-21 94.0
Msa0143640 AT5G07100.4 42.105 76 43 1 257 332 22 96 4.18e-12 66.6
Msa0143640 AT5G07100.5 51.282 78 37 1 242 319 124 200 1.54e-21 94.0
Msa0143640 AT5G07100.5 42.105 76 43 1 257 332 22 96 4.18e-12 66.6
Msa0143640 AT5G07100.3 51.282 78 37 1 242 319 124 200 1.54e-21 94.0
Msa0143640 AT5G07100.3 42.105 76 43 1 257 332 22 96 4.18e-12 66.6
Msa0143640 AT5G07100.1 51.282 78 37 1 242 319 217 293 2.20e-21 95.9
Msa0143640 AT5G07100.1 42.105 76 43 1 257 332 115 189 9.15e-12 67.0
Msa0143640 AT2G04880.2 52.000 75 35 1 245 319 269 342 3.02e-21 97.4
Msa0143640 AT2G04880.2 41.237 97 52 4 257 353 109 200 8.81e-13 71.2
Msa0143640 AT5G41570.1 43.299 97 54 1 220 316 59 154 3.33e-21 91.7
Msa0143640 AT5G26170.1 50.685 73 35 1 245 317 99 170 3.41e-21 91.7
Msa0143640 AT4G26440.1 35.000 180 100 5 207 386 323 485 3.57e-21 98.2
Msa0143640 AT4G26440.1 49.254 67 31 3 253 319 173 236 1.77e-11 67.4
Msa0143640 AT2G04880.1 52.000 75 35 1 245 319 293 366 5.04e-21 97.1
Msa0143640 AT2G04880.1 45.588 68 35 2 257 324 109 174 1.74e-12 70.5
Msa0143640 AT3G01080.2 51.351 74 35 1 246 319 331 403 2.36e-20 94.7
Msa0143640 AT3G01080.1 51.351 74 35 1 246 319 293 365 2.39e-20 94.4
Msa0143640 AT2G30250.1 42.857 98 52 2 225 319 291 387 2.77e-20 94.0
Msa0143640 AT2G47260.1 43.137 102 52 2 239 335 154 254 2.79e-20 92.8
Msa0143640 AT2G44745.1 44.186 86 47 1 231 316 117 201 2.90e-20 90.1
Msa0143640 AT5G49520.1 46.835 79 41 1 243 321 205 282 3.56e-20 93.6
Msa0143640 AT4G18170.1 36.090 133 78 3 222 354 141 266 6.29e-20 91.7
Msa0143640 AT5G46350.1 46.591 88 45 2 246 332 170 256 9.59e-20 91.3
Msa0143640 AT1G64000.1 52.113 71 33 1 246 316 101 170 3.34e-19 86.7
Msa0143640 AT5G28650.1 62.712 59 22 0 264 322 267 325 5.55e-19 89.0
Msa0143640 AT1G69310.4 42.574 101 51 2 216 316 110 203 7.04e-19 87.8
Msa0143640 AT1G69310.2 42.574 101 51 2 216 316 110 203 7.04e-19 87.8
Msa0143640 AT1G69310.1 42.574 101 51 2 216 316 110 203 7.04e-19 87.8
Msa0143640 AT5G13080.1 47.945 73 37 1 246 318 54 125 8.13e-19 84.0
Msa0143640 AT5G64810.1 45.000 80 43 1 237 316 88 166 1.19e-18 85.1
Msa0143640 AT4G24240.1 52.778 72 32 1 254 325 278 347 1.40e-18 88.2
Msa0143640 AT1G55600.1 44.872 78 42 1 242 319 290 366 1.56e-18 89.4
Msa0143640 AT3G04670.1 59.322 59 24 0 264 322 267 325 1.87e-18 87.4
Msa0143640 AT2G23320.1 59.322 59 24 0 260 318 241 299 2.85e-18 86.7
Msa0143640 AT1G29280.1 47.297 74 39 0 250 323 65 138 5.58e-18 84.7
Msa0143640 AT2G46130.1 51.351 74 35 1 243 316 14 86 6.23e-18 80.1
Msa0143640 AT4G39410.1 40.476 84 49 1 234 317 198 280 7.99e-18 85.1
Msa0143640 AT3G62340.1 48.193 83 42 1 238 320 97 178 8.46e-18 84.3
Msa0143640 AT2G30590.1 46.988 83 36 1 242 316 288 370 2.60e-17 84.7
Msa0143640 AT2G37260.2 56.923 65 27 1 257 321 265 328 3.30e-17 84.0
Msa0143640 AT2G37260.2 44.444 99 52 3 260 358 84 179 8.66e-17 82.8
Msa0143640 AT2G37260.3 56.923 65 27 1 257 321 267 330 3.40e-17 84.0
Msa0143640 AT2G37260.3 44.444 99 52 3 260 358 86 181 9.01e-17 82.8
Msa0143640 AT2G37260.1 56.923 65 27 1 257 321 347 410 7.18e-17 84.0
Msa0143640 AT2G37260.1 44.444 99 52 3 260 358 166 261 2.07e-16 82.4
Msa0143640 AT3G01970.1 47.297 74 38 1 245 318 51 123 9.70e-17 78.2
Msa0143640 AT4G31550.1 35.088 171 81 7 169 316 140 303 1.97e-16 81.3
Msa0143640 AT4G31550.2 46.154 78 35 2 239 316 232 302 3.14e-16 80.5
Msa0143640 AT2G24570.1 39.806 103 51 3 239 341 230 321 4.35e-16 80.1
Msa0143640 AT4G23550.1 44.156 77 43 0 258 334 139 215 2.91e-15 77.4
Msa0143640 AT1G30650.1 49.254 67 34 0 260 326 218 284 3.43e-15 78.6
Msa0143640 AT3G58710.2 52.308 65 31 0 259 323 70 134 4.39e-15 76.3
Msa0143640 AT3G58710.1 52.308 65 31 0 259 323 71 135 4.49e-15 76.3
Msa0143640 AT4G01250.1 46.479 71 38 0 259 329 128 198 5.31e-15 76.6
Msa0143640 AT2G34830.1 49.254 67 34 0 260 326 216 282 9.33e-15 77.4
Msa0143640 AT2G34830.2 49.254 67 34 0 260 326 225 291 1.13e-14 77.0
Msa0143640 AT4G31800.3 67.500 40 13 0 257 296 174 213 1.37e-14 74.3
Msa0143640 AT5G52830.1 48.571 70 36 0 260 329 166 235 3.09e-14 75.1
Msa0143640 AT1G69310.3 39.604 101 50 3 216 316 110 199 5.31e-14 73.2
Msa0143640 AT2G21900.1 45.161 62 33 1 258 319 108 168 8.10e-14 71.2
Msa0143640 AT2G46130.2 47.297 74 34 2 243 316 14 82 5.02e-13 66.2
Msa0143640 AT5G43290.1 51.724 58 27 1 259 316 114 170 5.24e-13 70.1
Msa0143640 AT5G24110.1 46.575 73 36 2 244 314 99 170 1.71e-12 68.9
Msa0143640 AT5G45050.4 34.483 116 74 1 211 326 995 1108 7.26e-12 69.3
Msa0143640 AT5G45050.2 34.483 116 74 1 211 326 1106 1219 8.02e-12 69.3
Msa0143640 AT5G45050.1 35.780 109 68 1 211 319 1134 1240 8.06e-12 69.3

Find 118 sgRNAs with CRISPR-Local

Find 596 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTGGACTTGGAATATT+TGG 0.129902 1_4:-2628370 None:intergenic
CCATATATGGAGTGCAATTC+TGG 0.170613 1_4:+2625750 Msa0143640:exon
GCAGCACTTTCTTCACTTAT+TGG 0.177197 1_4:+2634765 Msa0143640:CDS
CAATGCATGGGATTTGATTC+AGG 0.243163 1_4:-2634501 None:intergenic
ATAAATAATCACCAATTAAT+TGG 0.256352 1_4:-2635051 None:intergenic
TCATCAAGTTCTAAAGTAAA+TGG 0.266329 1_4:+2634888 Msa0143640:CDS
CCAGAATTGCACTCCATATA+TGG 0.273439 1_4:-2625750 None:intergenic
GGAAATGCAATTTAACAATA+TGG 0.281542 1_4:+2628090 Msa0143640:CDS
ATTCTGCATTTATTTCTTCA+TGG 0.288137 1_4:-2628159 None:intergenic
TTGTTCCTATTATTACTATA+TGG 0.291383 1_4:-2634561 None:intergenic
GAAATGGGCTGAGATGTTTC+AGG 0.315609 1_4:+2634845 Msa0143640:CDS
CATTTCCAGTGCTCGGTATT+CGG 0.345477 1_4:-2628074 None:intergenic
CAAACCCTAGCTTTCTTTGC+AGG 0.346131 1_4:-2628505 None:intergenic
ACAACTTCATCATCCTTTGT+TGG 0.363180 1_4:-2628409 None:intergenic
ATCAACCATATAGTAATAAT+AGG 0.373148 1_4:+2634556 Msa0143640:CDS
TGAGACAACAAAAGCTCAAA+TGG 0.387526 1_4:+2627997 Msa0143640:CDS
GCTAAAGCTGATTGAAAAGT+TGG 0.388661 1_4:-2634741 None:intergenic
ATTTGAATCAGAAAATGAAA+TGG 0.398163 1_4:+2634829 Msa0143640:CDS
GTCTTATTGAGTGTCTTACT+TGG 0.404266 1_4:-2628445 None:intergenic
GGATGCCAATGGAGAAAGTA+TGG 0.406659 1_4:+2628839 Msa0143640:CDS
CTTATTGGAAACACTAATCA+AGG 0.409882 1_4:+2634780 Msa0143640:CDS
CCATTCTGTGTATTGTTCAC+TGG 0.411705 1_4:-2634942 None:intergenic
CAAACCAACAACAATCTTCA+TGG 0.413700 1_4:+2634261 Msa0143640:CDS
TTTGTCCATACTTTCTCCAT+TGG 0.414359 1_4:-2628844 None:intergenic
ATCATGTCCGGTTAGAAAAC+AGG 0.417854 1_4:+2628922 Msa0143640:CDS
GGAAGAGTTGTCACTTGGAT+TGG 0.421095 1_4:+2628300 Msa0143640:CDS
CATCTGGTAGATAAAAGTTT+AGG 0.422150 1_4:-2634284 None:intergenic
AATCTAAGCACTTTAAACTT+TGG 0.426376 1_4:+2634588 Msa0143640:CDS
GATGATGTTGAAGAATTTGA+TGG 0.429432 1_4:-2634396 None:intergenic
CACAGTTGCACCATCATGTC+CGG 0.429469 1_4:+2628910 Msa0143640:CDS
AAGAAGGGTATCTTGGTAGT+TGG 0.437752 1_4:-2634458 None:intergenic
TTGTTGTTGGTTTGTGCTGA+TGG 0.452268 1_4:-2634252 None:intergenic
GGTTCATCAACCTCCAACTC+TGG 0.460772 1_4:+2634222 Msa0143640:CDS
CATATATGGAGTGCAATTCT+GGG 0.463692 1_4:+2625751 Msa0143640:exon
TTGGGCGAGGATATTGTGCT+TGG 0.464830 1_4:-2627724 None:intergenic
GCCGCATCGATGCTATTATC+AGG 0.467031 1_4:+2634201 Msa0143640:CDS
ATGATAGTGCAGGGTTGGAT+AGG 0.467366 1_4:-2634329 None:intergenic
AGAGTGGAAGAAGGGTATCT+TGG 0.467928 1_4:-2634465 None:intergenic
AAACTCCTGCAAAGAAAGCT+AGG 0.468281 1_4:+2628500 Msa0143640:CDS
GATCTTTCAGTATTAGCAAT+GGG 0.469342 1_4:-2627688 None:intergenic
TTTGAGGAGTAGCATAATTG+AGG 0.472126 1_4:-2634533 None:intergenic
TTTGAATCAGAAAATGAAAT+GGG 0.473732 1_4:+2634830 Msa0143640:CDS
CGATGCGGCCGCGGAAGTTG+TGG 0.478396 1_4:-2634187 None:intergenic
GATCTTGTTTCCCTCAGCCT+TGG 0.480636 1_4:+2628184 Msa0143640:CDS
GTGAGGTCAAGAGTGATAGT+TGG 0.491969 1_4:-2634366 None:intergenic
AACAAGGAAGAGTTGTCACT+TGG 0.493048 1_4:+2628295 Msa0143640:CDS
TTCTCAAAACAGATGAATGA+TGG 0.497069 1_4:+2628818 Msa0143640:intron
AAATTTGAAACATCAAAATC+AGG 0.497604 1_4:+2628328 Msa0143640:CDS
TAAATTGCATTTCCAGTGCT+CGG 0.498132 1_4:-2628081 None:intergenic
TCAGAACTATTCACTGGACT+TGG 0.498507 1_4:-2628379 None:intergenic
CTAAAGCTAAGAGTGGAAGA+AGG 0.503500 1_4:-2634474 None:intergenic
CGATAGTAAGCTCGAGGGCA+AGG 0.506033 1_4:-2628884 None:intergenic
TTCAAGTTTCTTGAACAAAA+CGG 0.507107 1_4:+2634917 Msa0143640:CDS
AGTTCTAAAGTAAATGGTTG+TGG 0.510261 1_4:+2634894 Msa0143640:CDS
TTTACTTTAGAACTTGATGA+AGG 0.512151 1_4:-2634885 None:intergenic
TAGGCCATGAAGATTGTTGT+TGG 0.513416 1_4:-2634265 None:intergenic
GAGTGCAATTCTGGGAGATC+TGG 0.518269 1_4:+2625759 Msa0143640:CDS
TTATTGAGTGTCTTACTTGG+TGG 0.519260 1_4:-2628442 None:intergenic
TTGAGATGATAGTGCAGGGT+TGG 0.519761 1_4:-2634334 None:intergenic
CTGAATCAAATCCCATGCAT+TGG 0.522577 1_4:+2634502 Msa0143640:CDS
GCCATGGCTGTTGCTGAAAG+TGG 0.522889 1_4:-2634162 None:intergenic
CGCGGAAGTTGTGGAAGCCA+TGG 0.523187 1_4:-2634178 None:intergenic
AAAAGTGCTTCTGCATCTCC+TGG 0.524615 1_4:+2635008 Msa0143640:CDS
AAGAGAAGTGAGCATAGTAC+TGG 0.527731 1_4:+2625810 Msa0143640:CDS
AATTTGATGGGTTTGAAGTG+AGG 0.528347 1_4:-2634383 None:intergenic
GGTGCAGAAAATGGCAAAGA+AGG 0.529278 1_4:-2634984 None:intergenic
CTTGAATTGAATCTAACAAA+GGG 0.532209 1_4:-2634420 None:intergenic
TAGGAACTCTTCCAAGGCTG+AGG 0.532985 1_4:-2628195 None:intergenic
ACAACTTCAGAACTATTCAC+TGG 0.533241 1_4:-2628385 None:intergenic
TCCACTTTCAGCAACAGCCA+TGG 0.540367 1_4:+2634161 Msa0143640:CDS
TCAAACATTTCACAACATGT+AGG 0.542220 1_4:+2634669 Msa0143640:CDS
TTCTGAAGTTGTTCCAACAA+AGG 0.546847 1_4:+2628396 Msa0143640:CDS
GGGAATCAAAATCAAAGTGC+AGG 0.547602 1_4:+2634801 Msa0143640:CDS
GAGACAACAAAAGCTCAAAT+GGG 0.551564 1_4:+2627998 Msa0143640:CDS
CCAGTGAACAATACACAGAA+TGG 0.554001 1_4:+2634942 Msa0143640:CDS
ACTGAAAGATCAATTGAGGC+TGG 0.554571 1_4:+2627700 Msa0143640:CDS
AAATCAGGTAGCACAACTGA+AGG 0.555466 1_4:+2628343 Msa0143640:CDS
TGATCTTTCAGTATTAGCAA+TGG 0.556800 1_4:-2627689 None:intergenic
GAGGAAGCTATTCCAATGCA+TGG 0.564369 1_4:-2634514 None:intergenic
ATGATGAAGTTGTAGAGACT+TGG 0.570390 1_4:+2628419 Msa0143640:CDS
AGGAAGCTATTCCAATGCAT+GGG 0.575316 1_4:-2634513 None:intergenic
TGGCTGTTGCTGAAAGTGGA+AGG 0.576476 1_4:-2634158 None:intergenic
AATGACCGAATACCGAGCAC+TGG 0.578776 1_4:+2628069 Msa0143640:CDS
AGGAGAACTAAAGCTAAGAG+TGG 0.580510 1_4:-2634481 None:intergenic
TGATGGAGATAGTGAACTCA+AGG 0.581059 1_4:+2625782 Msa0143640:CDS
TAAAGCTAAGAGTGGAAGAA+GGG 0.581456 1_4:-2634473 None:intergenic
ATGATGTTGAAGAATTTGAT+GGG 0.583175 1_4:-2634395 None:intergenic
TTGCTGAAAGTGGAAGGCTG+TGG 0.584244 1_4:-2634152 None:intergenic
TGTTACTAGGAACTCTTCCA+AGG 0.584869 1_4:-2628201 None:intergenic
TAATACTGAAAGATCAATTG+AGG 0.589489 1_4:+2627696 Msa0143640:CDS
AACAAAAGCTCAAATGGGTG+AGG 0.591231 1_4:+2628003 Msa0143640:CDS
TAATAGCATCGATGCGGCCG+CGG 0.591990 1_4:-2634196 None:intergenic
CATGGCTTCCACAACTTCCG+CGG 0.593483 1_4:+2634179 Msa0143640:CDS
AACTCCTGCAAAGAAAGCTA+GGG 0.594594 1_4:+2628501 Msa0143640:CDS
GAATGTTGAGATGATAGTGC+AGG 0.594784 1_4:-2634339 None:intergenic
GCTTGAATTGAATCTAACAA+AGG 0.596663 1_4:-2634421 None:intergenic
TGGCATTGAACCAGAGTTGG+AGG 0.598647 1_4:-2634232 None:intergenic
AGGAACTCTTCCAAGGCTGA+GGG 0.600114 1_4:-2628194 None:intergenic
TCAGGTACAAAGATGTGTTG+AGG 0.608124 1_4:+2634089 Msa0143640:intron
TAAGACAATGAGAGATGCTG+AGG 0.621356 1_4:+2628462 Msa0143640:CDS
AGGTGAGAAAAGAAAATCAA+CGG 0.624151 1_4:+2628023 Msa0143640:CDS
TGATGGCATTGAACCAGAGT+TGG 0.628021 1_4:-2634235 None:intergenic
TTCTAATCACAACATACGAA+GGG 0.629312 1_4:+2634121 Msa0143640:CDS
TAGACAAGTATTTACCGTTG+GGG 0.632603 1_4:-2628548 None:intergenic
CTTTGGTAGACAAAATACAA+TGG 0.632926 1_4:+2634605 Msa0143640:CDS
GTGCAACGATAGTAAGCTCG+AGG 0.633302 1_4:-2628890 None:intergenic
TTATTGGAAACACTAATCAA+GGG 0.641347 1_4:+2634781 Msa0143640:CDS
ATTCTAATCACAACATACGA+AGG 0.641504 1_4:+2634120 Msa0143640:CDS
AATCAGGTAGCACAACTGAA+GGG 0.644837 1_4:+2628344 Msa0143640:CDS
AGATGAATGATGGATGCCAA+TGG 0.647635 1_4:+2628828 Msa0143640:intron
AGCAAGATGTGACACCCCAA+CGG 0.667652 1_4:+2628534 Msa0143640:CDS
TTGTCACTATTATCACCACC+AGG 0.684962 1_4:-2635026 None:intergenic
TGCAACGATAGTAAGCTCGA+GGG 0.697067 1_4:-2628889 None:intergenic
AGTGCTTCTGCATCTCCTGG+TGG 0.699273 1_4:+2635011 Msa0143640:CDS
ACCTGATAATAGCATCGATG+CGG 0.704481 1_4:-2634202 None:intergenic
TAATGATGAAGAATTCAACA+AGG 0.709467 1_4:+2628279 Msa0143640:CDS
AATGTTGAGATGATAGTGCA+GGG 0.717220 1_4:-2634338 None:intergenic
AATTCTGGGAGATCTGGTGA+TGG 0.720675 1_4:+2625765 Msa0143640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATTATATATAAAT+AGG + chr1_4:2626924-2626943 Msa0143640:intron 0.0%
!! AAATATATTATATATAAATA+GGG + chr1_4:2626925-2626944 Msa0143640:intron 0.0%
!! ATTGATATAATTAAACAAAA+AGG - chr1_4:2626088-2626107 None:intergenic 10.0%
!! TTGTTTAATTATATCAATAT+TGG + chr1_4:2626090-2626109 Msa0143640:intron 10.0%
!! TTATTTAGTATAAACAATTT+AGG - chr1_4:2626644-2626663 None:intergenic 10.0%
!!! ATAAGTAGATTATTTTTTAT+TGG - chr1_4:2626869-2626888 None:intergenic 10.0%
!! AATCTACTTATATATAAAAA+AGG + chr1_4:2626878-2626897 Msa0143640:intron 10.0%
!! ATATATTATATATAAATAGG+GGG + chr1_4:2626927-2626946 Msa0143640:intron 10.0%
!! ACATTAAAAAAAATAAACTT+GGG - chr1_4:2627528-2627547 None:intergenic 10.0%
!! TACATTAAAAAAAATAAACT+TGG - chr1_4:2627529-2627548 None:intergenic 10.0%
!!! AGTTTATTTTTTTTAATGTA+AGG + chr1_4:2627529-2627548 Msa0143640:intron 10.0%
!!! ATATTGAGTTTAATTTTATA+TGG + chr1_4:2627861-2627880 Msa0143640:intron 10.0%
!! CAAAATCATTTATAAAAGTT+TGG - chr1_4:2626044-2626063 None:intergenic 15.0%
!!! GTGAATTATGATTTTTTTTA+AGG - chr1_4:2626263-2626282 None:intergenic 15.0%
!!! TTAATTTTGTTTTATATCAC+TGG + chr1_4:2626607-2626626 Msa0143640:intron 15.0%
!!! ATTTGTGGTATATATTTTTA+TGG - chr1_4:2626680-2626699 None:intergenic 15.0%
!!! GATGATTTTTTTTTTTTGAA+TGG + chr1_4:2626900-2626919 Msa0143640:intron 15.0%
!! ATTAAAAAAAATAAACTTGG+GGG - chr1_4:2627526-2627545 None:intergenic 15.0%
!! CATTAAAAAAAATAAACTTG+GGG - chr1_4:2627527-2627546 None:intergenic 15.0%
!!! ATTTTTCACTTTATTTATCA+TGG - chr1_4:2627584-2627603 None:intergenic 15.0%
!! GATAAATAAAGTGAAAAATA+AGG + chr1_4:2627585-2627604 Msa0143640:intron 15.0%
!!! AAATTAACCTTATCATTTTT+GGG - chr1_4:2627745-2627764 None:intergenic 15.0%
!!! AAAATTAACCTTATCATTTT+TGG - chr1_4:2627746-2627765 None:intergenic 15.0%
!!! AATATATGCGTAAATTTTTT+AGG - chr1_4:2628972-2628991 None:intergenic 15.0%
!! ATATAATGTGAAATATGATA+AGG - chr1_4:2632157-2632176 None:intergenic 15.0%
!! ATATATATTATGAAACACAA+TGG - chr1_4:2633971-2633990 None:intergenic 15.0%
!!! TTTTTCTCAATTTCCATATA+TGG + chr1_4:2625737-2625756 Msa0143640:exon 20.0%
!! TGTGATTTAAAAGCTAAAAA+TGG - chr1_4:2625922-2625941 None:intergenic 20.0%
!! TTTCTTTCTCTCTATATATA+TGG + chr1_4:2625956-2625975 Msa0143640:intron 20.0%
!!! AGATTTGATAGTCAAAATTA+AGG + chr1_4:2626010-2626029 Msa0143640:intron 20.0%
!!! GATTTGATAGTCAAAATTAA+GGG + chr1_4:2626011-2626030 Msa0143640:intron 20.0%
!!! GGATGATTTTTTTTTTTGAA+AGG - chr1_4:2626242-2626261 None:intergenic 20.0%
!! AATTATCATTGTAATTAACG+TGG + chr1_4:2626309-2626328 Msa0143640:intron 20.0%
!! ATTATCATTGTAATTAACGT+GGG + chr1_4:2626310-2626329 Msa0143640:intron 20.0%
!!! TTTTGGATAATAAAGGATAA+GGG - chr1_4:2626362-2626381 None:intergenic 20.0%
!!! ATTTTGGATAATAAAGGATA+AGG - chr1_4:2626363-2626382 None:intergenic 20.0%
!!! AAGTTGATTTTGGATAATAA+AGG - chr1_4:2626369-2626388 None:intergenic 20.0%
!!! AGACATTTTTAACAAGTTTA+AGG - chr1_4:2626785-2626804 None:intergenic 20.0%
!!! GGTGTATTTTTATTTTCTTT+TGG - chr1_4:2626973-2626992 None:intergenic 20.0%
!! ATTAAATTGAAAATAGACGT+CGG + chr1_4:2627095-2627114 Msa0143640:intron 20.0%
!! TCATCAAATGTGTATATTAA+TGG - chr1_4:2627272-2627291 None:intergenic 20.0%
!! TTAATTGACCAAATATGAAT+AGG + chr1_4:2627376-2627395 Msa0143640:intron 20.0%
!! TAATTGACCAAATATGAATA+GGG + chr1_4:2627377-2627396 Msa0143640:intron 20.0%
!! TTTCTAAATGACATAAGAAA+GGG - chr1_4:2627501-2627520 None:intergenic 20.0%
!! ATTTCTAAATGACATAAGAA+AGG - chr1_4:2627502-2627521 None:intergenic 20.0%
!!! TTTTTTTAATGTAAGGAACA+AGG + chr1_4:2627536-2627555 Msa0143640:intron 20.0%
!!! TGAGTTTAATTTTATATGGA+CGG + chr1_4:2627865-2627884 Msa0143640:intron 20.0%
!!! TTTTTTGGAATATTGTTACT+AGG - chr1_4:2628217-2628236 None:intergenic 20.0%
!!! AAATTTGAAACATCAAAATC+AGG + chr1_4:2628328-2628347 Msa0143640:CDS 20.0%
!! ATCGAATTTGATATAAAATG+AGG - chr1_4:2628582-2628601 None:intergenic 20.0%
!!! ACTTCTCTATTTTAATCTAA+CGG - chr1_4:2628631-2628650 None:intergenic 20.0%
!!! AAGTTTTTCTCTTAATCTAA+TGG + chr1_4:2628695-2628714 Msa0143640:intron 20.0%
!!! AATAAACTTGTTTTCATCAA+TGG + chr1_4:2629550-2629569 Msa0143640:intron 20.0%
!! AATTAATAAGGTGTATTCAT+TGG + chr1_4:2630029-2630048 Msa0143640:intron 20.0%
!!! ACATTAGAAATTTTAAAGTG+TGG - chr1_4:2630702-2630721 None:intergenic 20.0%
!! TTTATGGATATATTACAATG+AGG - chr1_4:2630936-2630955 None:intergenic 20.0%
!!! AATTGATTCATTGTGATATT+TGG + chr1_4:2631180-2631199 Msa0143640:intron 20.0%
!!! ATTGATTCATTGTGATATTT+GGG + chr1_4:2631181-2631200 Msa0143640:intron 20.0%
!!! TCTAATCTTTTCAAAGTTTT+TGG + chr1_4:2631659-2631678 Msa0143640:intron 20.0%
!! ACCTTTCAAATTAAAGATTT+GGG + chr1_4:2632889-2632908 Msa0143640:intron 20.0%
!! AACACATAATTATGAATTTC+AGG + chr1_4:2634071-2634090 Msa0143640:intron 20.0%
!! ATCAACCATATAGTAATAAT+AGG + chr1_4:2634556-2634575 Msa0143640:CDS 20.0%
!! TTGTTCCTATTATTACTATA+TGG - chr1_4:2634564-2634583 None:intergenic 20.0%
!! ATTTGAATCAGAAAATGAAA+TGG + chr1_4:2634829-2634848 Msa0143640:CDS 20.0%
!! TTTGAATCAGAAAATGAAAT+GGG + chr1_4:2634830-2634849 Msa0143640:CDS 20.0%
! TGAAAGTCATCATCAAAAAA+AGG + chr1_4:2625842-2625861 Msa0143640:CDS 25.0%
!! ATGGATCTATATGTTTGTTT+TGG + chr1_4:2625975-2625994 Msa0143640:intron 25.0%
! TATCTACAAGTCTTAAACAA+AGG + chr1_4:2626120-2626139 Msa0143640:intron 25.0%
! AAAGGTGATTAATTTCTACA+AGG - chr1_4:2626224-2626243 None:intergenic 25.0%
! TTATCATTGTAATTAACGTG+GGG + chr1_4:2626311-2626330 Msa0143640:intron 25.0%
!! TTGACTTCGATTCTTAATTT+TGG + chr1_4:2626561-2626580 Msa0143640:intron 25.0%
!!! ATTTTTTTAGGGGTTTGTTT+GGG - chr1_4:2626755-2626774 None:intergenic 25.0%
!!! AATTTTTTTAGGGGTTTGTT+TGG - chr1_4:2626756-2626775 None:intergenic 25.0%
!!! AAGGAGGTTGAATTTTTTTA+GGG - chr1_4:2626766-2626785 None:intergenic 25.0%
!!! TAAGGAGGTTGAATTTTTTT+AGG - chr1_4:2626767-2626786 None:intergenic 25.0%
!! CATTTTTAACAAGTTTAAGG+AGG - chr1_4:2626782-2626801 None:intergenic 25.0%
!!! TTTCTTTTGGTGTAAAACTT+GGG - chr1_4:2626960-2626979 None:intergenic 25.0%
!!! TTTTCTTTTGGTGTAAAACT+TGG - chr1_4:2626961-2626980 None:intergenic 25.0%
!!! ATGTTTGTTGATTTTTCCTT+GGG - chr1_4:2627002-2627021 None:intergenic 25.0%
! AAATTAAGAACATGCACAAT+TGG - chr1_4:2627186-2627205 None:intergenic 25.0%
!!! TGAAGATGTTATCATTTTTC+TGG + chr1_4:2627218-2627237 Msa0143640:intron 25.0%
! TGGCATATACATACTATTAA+GGG + chr1_4:2627238-2627257 Msa0143640:intron 25.0%
!!! GATATAATTTGTTTTGTGTG+TGG - chr1_4:2627314-2627333 None:intergenic 25.0%
! AATTTAAACTTACATGTGCT+GGG - chr1_4:2627353-2627372 None:intergenic 25.0%
! TAATTTAAACTTACATGTGC+TGG - chr1_4:2627354-2627373 None:intergenic 25.0%
!!! CTTTTTTCCCTATTCATATT+TGG - chr1_4:2627387-2627406 None:intergenic 25.0%
! AATAGGGAAAAAAGATTCAT+TGG + chr1_4:2627393-2627412 Msa0143640:intron 25.0%
! TTATGAACATGTCTTTAATG+AGG - chr1_4:2627443-2627462 None:intergenic 25.0%
!! TATATTTGCCTATGTTTTAC+AGG + chr1_4:2627660-2627679 Msa0143640:intron 25.0%
! TAATACTGAAAGATCAATTG+AGG + chr1_4:2627696-2627715 Msa0143640:CDS 25.0%
!!! GAGTTTAATTTTATATGGAC+GGG + chr1_4:2627866-2627885 Msa0143640:intron 25.0%
! ACATGAGTACTAATTGAAAT+TGG - chr1_4:2627937-2627956 None:intergenic 25.0%
! TGTTGCAATTACATGTATAT+AGG + chr1_4:2627961-2627980 Msa0143640:intron 25.0%
! GGAAATGCAATTTAACAATA+TGG + chr1_4:2628090-2628109 Msa0143640:CDS 25.0%
!! ATTCTGCATTTATTTCTTCA+TGG - chr1_4:2628162-2628181 None:intergenic 25.0%
!!! ACTTTCTCTTGATCATTTTT+TGG - chr1_4:2628232-2628251 None:intergenic 25.0%
! TAATGATGAAGAATTCAACA+AGG + chr1_4:2628279-2628298 Msa0143640:CDS 25.0%
! ATATCAAATTCGATGTTACA+TGG + chr1_4:2628588-2628607 Msa0143640:intron 25.0%
!!! TATTTTAATCTAACGGTCTA+TGG - chr1_4:2628624-2628643 None:intergenic 25.0%
! ATCAAAGTGTGAACAAATTA+TGG - chr1_4:2628798-2628817 None:intergenic 25.0%
! TATGGACAAAAAATTGCAAA+GGG + chr1_4:2628857-2628876 Msa0143640:CDS 25.0%
! TCTTCCATTGTTTCATAATA+TGG + chr1_4:2629171-2629190 Msa0143640:intron 25.0%
! GATACCATATTATGAAACAA+TGG - chr1_4:2629178-2629197 None:intergenic 25.0%
! AAACAAGAAGAAAAATGGTT+AGG - chr1_4:2629252-2629271 None:intergenic 25.0%
!! TTCAGTGAAATACTCTAAAA+CGG - chr1_4:2629812-2629831 None:intergenic 25.0%
! TCCATTACCTTCAATTAATA+AGG + chr1_4:2630017-2630036 Msa0143640:intron 25.0%
! ACCTTATTAATTGAAGGTAA+TGG - chr1_4:2630021-2630040 None:intergenic 25.0%
! GAATACACCTTATTAATTGA+AGG - chr1_4:2630027-2630046 None:intergenic 25.0%
!!! ATGGTAACAATGGTTTTATT+TGG - chr1_4:2630651-2630670 None:intergenic 25.0%
!! ATTCAAGCTACTAATGATTT+TGG - chr1_4:2630766-2630785 None:intergenic 25.0%
! TGCATTTATCAGGTAAAAAT+TGG - chr1_4:2630797-2630816 None:intergenic 25.0%
!! AGGTTGAACATCTTTATTTA+TGG - chr1_4:2630952-2630971 None:intergenic 25.0%
! GTAAATGTACTAGAAACTAT+AGG - chr1_4:2630972-2630991 None:intergenic 25.0%
! CATATTTGACAATCTTTGAT+TGG - chr1_4:2631042-2631061 None:intergenic 25.0%
! TATTATCAACACAGATAGAA+GGG - chr1_4:2631076-2631095 None:intergenic 25.0%
! TTATTATCAACACAGATAGA+AGG - chr1_4:2631077-2631096 None:intergenic 25.0%
! AAATTGACAAACATCACAAA+TGG - chr1_4:2631102-2631121 None:intergenic 25.0%
! TGAGATAAACTATGAGAAAA+AGG - chr1_4:2631143-2631162 None:intergenic 25.0%
! TTGATTCATTGTGATATTTG+GGG + chr1_4:2631182-2631201 Msa0143640:intron 25.0%
!! CAATAGTGATAAAGTACTTA+TGG - chr1_4:2631235-2631254 None:intergenic 25.0%
!!! TTATCACTTCTAAGGATTTT+AGG - chr1_4:2631368-2631387 None:intergenic 25.0%
! AAAATCCTTAGAAGTGATAA+TGG + chr1_4:2631368-2631387 Msa0143640:intron 25.0%
! ATGAAGGTAAATCAAATTCA+GGG - chr1_4:2631394-2631413 None:intergenic 25.0%
! AATGAAGGTAAATCAAATTC+AGG - chr1_4:2631395-2631414 None:intergenic 25.0%
!!! CCTTTAGAGTTATAAAATGA+AGG - chr1_4:2631410-2631429 None:intergenic 25.0%
!! CCTTCATTTTATAACTCTAA+AGG + chr1_4:2631407-2631426 Msa0143640:intron 25.0%
!! CCAATAACAATTTGGTAATT+TGG - chr1_4:2631537-2631556 None:intergenic 25.0%
! CCAAATTACCAAATTGTTAT+TGG + chr1_4:2631534-2631553 Msa0143640:intron 25.0%
! GAATCATGTAAAACATGATA+TGG - chr1_4:2631629-2631648 None:intergenic 25.0%
!! ACTTTGAAAAGATTAGAATC+AGG - chr1_4:2631656-2631675 None:intergenic 25.0%
!!! ATATTTTTAGGCTATAAACC+TGG + chr1_4:2631749-2631768 Msa0143640:intron 25.0%
! TTACAAAGGTTATGTTCTTA+TGG + chr1_4:2631772-2631791 Msa0143640:intron 25.0%
! TTCATGAAAAGTAACATTTC+TGG - chr1_4:2631825-2631844 None:intergenic 25.0%
! TGTAATCTTGTAAATAAGCA+GGG - chr1_4:2632096-2632115 None:intergenic 25.0%
! ATGTAATCTTGTAAATAAGC+AGG - chr1_4:2632097-2632116 None:intergenic 25.0%
! AATAATCTAAGCCTTCAATT+TGG - chr1_4:2632456-2632475 None:intergenic 25.0%
!! TGAAGTGGATTTAAGAAAAA+GGG - chr1_4:2632773-2632792 None:intergenic 25.0%
!! ATGAAGTGGATTTAAGAAAA+AGG - chr1_4:2632774-2632793 None:intergenic 25.0%
! AATAGTAAATGAAGATGAAG+TGG - chr1_4:2632788-2632807 None:intergenic 25.0%
!! ATCTTCATTTACTATTTTGC+TGG + chr1_4:2632792-2632811 Msa0143640:intron 25.0%
! CACCTTTCAAATTAAAGATT+TGG + chr1_4:2632888-2632907 Msa0143640:intron 25.0%
! TTAGATTTACTTGAAGATTC+AGG + chr1_4:2632988-2633007 Msa0143640:intron 25.0%
!! TTTTATATCTTAATACCACC+AGG + chr1_4:2633124-2633143 Msa0143640:intron 25.0%
! ATGATGTTGAAGAATTTGAT+GGG - chr1_4:2634398-2634417 None:intergenic 25.0%
! CTTGAATTGAATCTAACAAA+GGG - chr1_4:2634423-2634442 None:intergenic 25.0%
!!! TTACTATATGGTTGATTTTG+AGG - chr1_4:2634552-2634571 None:intergenic 25.0%
! AATCTAAGCACTTTAAACTT+TGG + chr1_4:2634588-2634607 Msa0143640:CDS 25.0%
!!! ATTGTTGTTTTTTTGCATGT+AGG - chr1_4:2634646-2634665 None:intergenic 25.0%
! TTATTGGAAACACTAATCAA+GGG + chr1_4:2634781-2634800 Msa0143640:CDS 25.0%
!!! TTTACTTTAGAACTTGATGA+AGG - chr1_4:2634888-2634907 None:intergenic 25.0%
!!! TCATCAAGTTCTAAAGTAAA+TGG + chr1_4:2634888-2634907 Msa0143640:CDS 25.0%
!! TTCAAGTTTCTTGAACAAAA+CGG + chr1_4:2634917-2634936 Msa0143640:CDS 25.0%
AAAAAAGGAGACTATTGTTG+AGG + chr1_4:2625857-2625876 Msa0143640:CDS 30.0%
TATCATTGTAATTAACGTGG+GGG + chr1_4:2626312-2626331 Msa0143640:intron 30.0%
!!! ACTTAGTAGCAAGTTGATTT+TGG - chr1_4:2626379-2626398 None:intergenic 30.0%
CACAAGAAATCCATATAGTT+AGG + chr1_4:2626478-2626497 Msa0143640:intron 30.0%
ATCTCTATGTCCTAACTATA+TGG - chr1_4:2626491-2626510 None:intergenic 30.0%
CGATAAATACTGAAGATTTG+TGG - chr1_4:2626695-2626714 None:intergenic 30.0%
!!! AGGAGGTTGAATTTTTTTAG+GGG - chr1_4:2626765-2626784 None:intergenic 30.0%
!!! GATGTTTGTTGATTTTTCCT+TGG - chr1_4:2627003-2627022 None:intergenic 30.0%
CTGGCATATACATACTATTA+AGG + chr1_4:2627237-2627256 Msa0143640:intron 30.0%
TATCATGGATGCAAAACAAT+TGG - chr1_4:2627569-2627588 None:intergenic 30.0%
GATCTTTCAGTATTAGCAAT+GGG - chr1_4:2627691-2627710 None:intergenic 30.0%
TGATCTTTCAGTATTAGCAA+TGG - chr1_4:2627692-2627711 None:intergenic 30.0%
CAAGTAGAATCACTAAAAGT+CGG - chr1_4:2627825-2627844 None:intergenic 30.0%
AGGTGAGAAAAGAAAATCAA+CGG + chr1_4:2628023-2628042 Msa0143640:CDS 30.0%
ATAGACAAGTATTTACCGTT+GGG - chr1_4:2628552-2628571 None:intergenic 30.0%
TCTCTTAATCTAATGGTGTA+CGG + chr1_4:2628702-2628721 Msa0143640:intron 30.0%
TTCTCAAAACAGATGAATGA+TGG + chr1_4:2628818-2628837 Msa0143640:intron 30.0%
GTATGGACAAAAAATTGCAA+AGG + chr1_4:2628856-2628875 Msa0143640:CDS 30.0%
! ATATGTACCTGTTTTCTAAC+CGG - chr1_4:2628932-2628951 None:intergenic 30.0%
GGAAGAAACAAGAAGAAAAA+TGG - chr1_4:2629257-2629276 None:intergenic 30.0%
TCAAATATGCAGAAAAACAG+AGG - chr1_4:2629359-2629378 None:intergenic 30.0%
! AAGCTTTTCATCTTCAACAA+TGG + chr1_4:2629378-2629397 Msa0143640:intron 30.0%
ACTAAAGTTTGAGCAATTTG+TGG - chr1_4:2629670-2629689 None:intergenic 30.0%
! ATTGTTGATAGAAGAACGTA+AGG - chr1_4:2629770-2629789 None:intergenic 30.0%
! TCTATCAACAATTTGAAGCA+AGG + chr1_4:2629778-2629797 Msa0143640:intron 30.0%
TCACTGAAATGAAAACTCTA+TGG + chr1_4:2629824-2629843 Msa0143640:intron 30.0%
CACTGAAATGAAAACTCTAT+GGG + chr1_4:2629825-2629844 Msa0143640:intron 30.0%
! CAAGTGATTCAATTTTTGAC+TGG + chr1_4:2629946-2629965 Msa0143640:intron 30.0%
! TCTGATTCTAAGAAGCAATA+TGG + chr1_4:2630129-2630148 Msa0143640:intron 30.0%
TCTAAGAAGCAATATGGAAA+TGG + chr1_4:2630135-2630154 Msa0143640:intron 30.0%
ACAAAACCTAGAGTTATTCT+TGG - chr1_4:2630178-2630197 None:intergenic 30.0%
GATTGGACTTATATGAATTG+GGG - chr1_4:2630257-2630276 None:intergenic 30.0%
GGATTGGACTTATATGAATT+GGG - chr1_4:2630258-2630277 None:intergenic 30.0%
AGGATTGGACTTATATGAAT+TGG - chr1_4:2630259-2630278 None:intergenic 30.0%
! AAAACAGTTGATATACCTGA+AGG - chr1_4:2630504-2630523 None:intergenic 30.0%
TATCTGATTCATCTCATGAT+TGG + chr1_4:2630535-2630554 Msa0143640:intron 30.0%
TTTGGTAAATGAACATGAAC+AGG - chr1_4:2630633-2630652 None:intergenic 30.0%
TCAGATTAACCTTGAAATGT+GGG - chr1_4:2630734-2630753 None:intergenic 30.0%
ATCAGATTAACCTTGAAATG+TGG - chr1_4:2630735-2630754 None:intergenic 30.0%
ACCTGATAAATGCATTATAC+AGG + chr1_4:2630803-2630822 Msa0143640:intron 30.0%
TCCTGTATAATGCATTTATC+AGG - chr1_4:2630807-2630826 None:intergenic 30.0%
AATTTGTATAAACCACCATG+AGG - chr1_4:2630864-2630883 None:intergenic 30.0%
ATGGTGGTTTATACAAATTG+AGG + chr1_4:2630865-2630884 Msa0143640:intron 30.0%
TTAGAAACAGAAGACTGAAA+AGG - chr1_4:2630909-2630928 None:intergenic 30.0%
!! CTATTGTTGATGACTTTAGT+AGG + chr1_4:2631249-2631268 Msa0143640:intron 30.0%
! ATGACTTTAGTAGGTTTGTT+TGG + chr1_4:2631258-2631277 Msa0143640:intron 30.0%
TTCCTACATTGAGTATATGT+TGG - chr1_4:2631496-2631515 None:intergenic 30.0%
GCATATGACCAATAACAATT+TGG - chr1_4:2631545-2631564 None:intergenic 30.0%
! GCAAGGAAGTCTATATTTTT+AGG + chr1_4:2631737-2631756 Msa0143640:intron 30.0%
GTAATCTTGTAAATAAGCAG+GGG - chr1_4:2632095-2632114 None:intergenic 30.0%
AAAGCAAAACAAGAATGAGA+AGG - chr1_4:2632199-2632218 None:intergenic 30.0%
AAGCAAACAAACATGATTGT+TGG + chr1_4:2632257-2632276 Msa0143640:intron 30.0%
GTTTATATGATTATACCTCC+TGG + chr1_4:2632607-2632626 Msa0143640:intron 30.0%
TGCAATTTACACACTTGATT+GGG - chr1_4:2632649-2632668 None:intergenic 30.0%
! AAATTGCACAAGTCACTTTA+TGG + chr1_4:2632661-2632680 Msa0143640:intron 30.0%
ACTTCAGTCTTAATCATCAA+TGG + chr1_4:2632721-2632740 Msa0143640:intron 30.0%
AATCATCAATGGTTACAAAC+AGG + chr1_4:2632732-2632751 Msa0143640:intron 30.0%
!! GCCCAAATCTTTAATTTGAA+AGG - chr1_4:2632893-2632912 None:intergenic 30.0%
AATCTAAACAGTACTTTCTC+TGG - chr1_4:2632975-2632994 None:intergenic 30.0%
GCATTAAAATGAGTTTGAGT+GGG - chr1_4:2633198-2633217 None:intergenic 30.0%
AGCATTAAAATGAGTTTGAG+TGG - chr1_4:2633199-2633218 None:intergenic 30.0%
! AGAGTGTTAAGATACTTGAA+AGG + chr1_4:2633225-2633244 Msa0143640:intron 30.0%
! TGAAAAGCCTTGTAATTGAA+GGG - chr1_4:2633289-2633308 None:intergenic 30.0%
GCAATCTATCTCTAAATGTT+TGG - chr1_4:2633595-2633614 None:intergenic 30.0%
!! ACAAAGTATTGAATGGTTGA+GGG - chr1_4:2633713-2633732 None:intergenic 30.0%
!! AACAAAGTATTGAATGGTTG+AGG - chr1_4:2633714-2633733 None:intergenic 30.0%
!! TTGGACAACAAAGTATTGAA+TGG - chr1_4:2633720-2633739 None:intergenic 30.0%
ATTCTAATCACAACATACGA+AGG + chr1_4:2634120-2634139 Msa0143640:CDS 30.0%
TTCTAATCACAACATACGAA+GGG + chr1_4:2634121-2634140 Msa0143640:CDS 30.0%
CATCTGGTAGATAAAAGTTT+AGG - chr1_4:2634287-2634306 None:intergenic 30.0%
! CTAAACTTTTATCTACCAGA+TGG + chr1_4:2634285-2634304 Msa0143640:CDS 30.0%
!! TGATTTGATTTTGAACCATC+TGG - chr1_4:2634303-2634322 None:intergenic 30.0%
GATGATGTTGAAGAATTTGA+TGG - chr1_4:2634399-2634418 None:intergenic 30.0%
GCTTGAATTGAATCTAACAA+AGG - chr1_4:2634424-2634443 None:intergenic 30.0%
CTTTGGTAGACAAAATACAA+TGG + chr1_4:2634605-2634624 Msa0143640:CDS 30.0%
!!! TGTTTTTTTGCATGTAGGTT+TGG - chr1_4:2634641-2634660 None:intergenic 30.0%
TCAAACATTTCACAACATGT+AGG + chr1_4:2634669-2634688 Msa0143640:CDS 30.0%
CTTATTGGAAACACTAATCA+AGG + chr1_4:2634780-2634799 Msa0143640:CDS 30.0%
!! AGTTCTAAAGTAAATGGTTG+TGG + chr1_4:2634894-2634913 Msa0143640:CDS 30.0%
CATATATGGAGTGCAATTCT+GGG + chr1_4:2625751-2625770 Msa0143640:exon 35.0%
GGATAATAAAGGATAAGGGA+AGG - chr1_4:2626358-2626377 None:intergenic 35.0%
AAAATACACCAAAACACCCA+AGG + chr1_4:2626983-2627002 Msa0143640:intron 35.0%
! TGATTTTTCCTTGGGTGTTT+TGG - chr1_4:2626994-2627013 None:intergenic 35.0%
GACATAAGAAAGGGAAAATG+AGG - chr1_4:2627492-2627511 None:intergenic 35.0%
TGAGACAACAAAAGCTCAAA+TGG + chr1_4:2627997-2628016 Msa0143640:CDS 35.0%
GAGACAACAAAAGCTCAAAT+GGG + chr1_4:2627998-2628017 Msa0143640:CDS 35.0%
TAAATTGCATTTCCAGTGCT+CGG - chr1_4:2628084-2628103 None:intergenic 35.0%
TTCACTGGACTTGGAATATT+TGG - chr1_4:2628373-2628392 None:intergenic 35.0%
ACAACTTCAGAACTATTCAC+TGG - chr1_4:2628388-2628407 None:intergenic 35.0%
!! TTCTGAAGTTGTTCCAACAA+AGG + chr1_4:2628396-2628415 Msa0143640:CDS 35.0%
ACAACTTCATCATCCTTTGT+TGG - chr1_4:2628412-2628431 None:intergenic 35.0%
ATGATGAAGTTGTAGAGACT+TGG + chr1_4:2628419-2628438 Msa0143640:CDS 35.0%
TTATTGAGTGTCTTACTTGG+TGG - chr1_4:2628445-2628464 None:intergenic 35.0%
! GTCTTATTGAGTGTCTTACT+TGG - chr1_4:2628448-2628467 None:intergenic 35.0%
TAGACAAGTATTTACCGTTG+GGG - chr1_4:2628551-2628570 None:intergenic 35.0%
GATAGACAAGTATTTACCGT+TGG - chr1_4:2628553-2628572 None:intergenic 35.0%
TTTGTCCATACTTTCTCCAT+TGG - chr1_4:2628847-2628866 None:intergenic 35.0%
CAATAGTGAAGTTACTTGCA+TGG - chr1_4:2629044-2629063 None:intergenic 35.0%
GTTTGTGTAGTACAACTCTT+AGG + chr1_4:2629094-2629113 Msa0143640:intron 35.0%
GTTAGGATCGCAAGAAAAAA+CGG - chr1_4:2629235-2629254 None:intergenic 35.0%
GAAGAACACGAAGAAATCAA+TGG - chr1_4:2629330-2629349 None:intergenic 35.0%
TTCTATGTTCATCCTAGTGA+AGG + chr1_4:2629439-2629458 Msa0143640:intron 35.0%
AAATCAGCAAGATCAGGAAT+AGG - chr1_4:2629583-2629602 None:intergenic 35.0%
!! AAGGTAATGGATCCAAAAGA+AGG - chr1_4:2630008-2630027 None:intergenic 35.0%
! GTATTCATTGGTTATCCAAG+AGG + chr1_4:2630041-2630060 Msa0143640:intron 35.0%
ATCCAAGAGGAGAGTAATAA+TGG + chr1_4:2630054-2630073 Msa0143640:intron 35.0%
TACCATTATTACTCTCCTCT+TGG - chr1_4:2630059-2630078 None:intergenic 35.0%
GGAAATGGAAAATCATTTGC+TGG + chr1_4:2630150-2630169 Msa0143640:intron 35.0%
GATAACAAAACTCCACAGTA+TGG - chr1_4:2630221-2630240 None:intergenic 35.0%
!!! GAGTTTTGTTATCAGAAGCA+TGG + chr1_4:2630228-2630247 Msa0143640:intron 35.0%
! AAGCAATATGGTTTGAGGTT+GGG - chr1_4:2630446-2630465 None:intergenic 35.0%
AGTAGAAGCAATATGGTTTG+AGG - chr1_4:2630451-2630470 None:intergenic 35.0%
AATTGGGAGTAGAAGCAATA+TGG - chr1_4:2630458-2630477 None:intergenic 35.0%
! CATGATTGGTTACTTGATTC+TGG + chr1_4:2630549-2630568 Msa0143640:intron 35.0%
AGCATGATGTATGGTAACAA+TGG - chr1_4:2630661-2630680 None:intergenic 35.0%
ATTGTTACCATACATCATGC+TGG + chr1_4:2630660-2630679 Msa0143640:intron 35.0%
TCTATATTCCCCACATTTCA+AGG + chr1_4:2630722-2630741 Msa0143640:intron 35.0%
CAGATTAACCTTGAAATGTG+GGG - chr1_4:2630733-2630752 None:intergenic 35.0%
GACTGAAAAGGAAAAACTGA+AGG - chr1_4:2630897-2630916 None:intergenic 35.0%
ATATTCCTGAAACTGCACTT+TGG + chr1_4:2630994-2631013 Msa0143640:intron 35.0%
TGAATAGAAGGAACACTCAA+AGG - chr1_4:2631209-2631228 None:intergenic 35.0%
TTGAGTGTTCCTTCTATTCA+TGG + chr1_4:2631209-2631228 Msa0143640:intron 35.0%
TACTTATGGCCATGAATAGA+AGG - chr1_4:2631221-2631240 None:intergenic 35.0%
TTTGATCAAATCCAAAGCTG+AGG + chr1_4:2631286-2631305 Msa0143640:intron 35.0%
!! CTAAAGGCATTCTTCATCAT+AGG + chr1_4:2631423-2631442 Msa0143640:intron 35.0%
CACCAACATATACTCAATGT+AGG + chr1_4:2631491-2631510 Msa0143640:intron 35.0%
TTTATGATGAAGAAGTGGAG+TGG - chr1_4:2631603-2631622 None:intergenic 35.0%
GGAGATTTATGATGAAGAAG+TGG - chr1_4:2631608-2631627 None:intergenic 35.0%
AATATAGACTTCCTTGCTCT+AGG - chr1_4:2631734-2631753 None:intergenic 35.0%
AGAACATAACCTTTGTAACC+AGG - chr1_4:2631770-2631789 None:intergenic 35.0%
TCAACAAAAGGTTGAGATGA+GGG - chr1_4:2631911-2631930 None:intergenic 35.0%
ATCAACAAAAGGTTGAGATG+AGG - chr1_4:2631912-2631931 None:intergenic 35.0%
GAATCTTCTGGTGTAGAAAT+AGG - chr1_4:2631965-2631984 None:intergenic 35.0%
GCAATAATAGGAGAATCAGA+GGG - chr1_4:2632034-2632053 None:intergenic 35.0%
AGCAATAATAGGAGAATCAG+AGG - chr1_4:2632035-2632054 None:intergenic 35.0%
GCATATATGGAATTGACAGT+AGG - chr1_4:2632124-2632143 None:intergenic 35.0%
AGGAGAAGAAGATGCATATA+TGG - chr1_4:2632137-2632156 None:intergenic 35.0%
TTTGCTTCAGTGAAGGATTT+AGG - chr1_4:2632244-2632263 None:intergenic 35.0%
ATGTTTGTTTGCTTCAGTGA+AGG - chr1_4:2632251-2632270 None:intergenic 35.0%
AAAGTGAAACATCATGCTGA+TGG + chr1_4:2632385-2632404 Msa0143640:intron 35.0%
TTCAATTTGGTTGTATCCCT+TGG - chr1_4:2632443-2632462 None:intergenic 35.0%
AAGGGATACAACCAAATTGA+AGG + chr1_4:2632442-2632461 Msa0143640:intron 35.0%
!!! TTTTGAAACATACTCTCCAG+TGG + chr1_4:2632474-2632493 Msa0143640:intron 35.0%
!! CATTGTTCACATCAAGTTGA+TGG - chr1_4:2632558-2632577 None:intergenic 35.0%
TTGAAGTTCTCCATGCAAAA+AGG - chr1_4:2632581-2632600 None:intergenic 35.0%
TTTACACACTTGATTGGGAT+TGG - chr1_4:2632644-2632663 None:intergenic 35.0%
GTGCAATTTACACACTTGAT+TGG - chr1_4:2632650-2632669 None:intergenic 35.0%
!! TTGATGATGTGATCTTAGCA+GGG + chr1_4:2632821-2632840 Msa0143640:intron 35.0%
GGCATTCTTAAATACTTCCT+TGG + chr1_4:2632910-2632929 Msa0143640:intron 35.0%
AATGAGCAACTTCAATACCA+AGG - chr1_4:2632930-2632949 None:intergenic 35.0%
AGCTTAACATTTGGATCAGA+AGG - chr1_4:2633042-2633061 None:intergenic 35.0%
TCATTGTGGAGCTTAACATT+TGG - chr1_4:2633051-2633070 None:intergenic 35.0%
AAGGTTGTGAATCATCATTG+TGG - chr1_4:2633065-2633084 None:intergenic 35.0%
TAAGCAGGAACATCAGAATA+AGG - chr1_4:2633084-2633103 None:intergenic 35.0%
TGAGTGATGAATGTGATATC+TGG - chr1_4:2633150-2633169 None:intergenic 35.0%
AAAGCTTCCCTTCAATTACA+AGG + chr1_4:2633279-2633298 Msa0143640:intron 35.0%
! CTGAAAAGCCTTGTAATTGA+AGG - chr1_4:2633290-2633309 None:intergenic 35.0%
GATACCAGAAGATCTATTTC+TGG + chr1_4:2633333-2633352 Msa0143640:intron 35.0%
TGATTGTCACAGTAGATAAC+AGG - chr1_4:2633528-2633547 None:intergenic 35.0%
AGGTAGTAGTTTGAGAATGT+TGG - chr1_4:2633643-2633662 None:intergenic 35.0%
TAGTGAAAAAATCAGCAAGC+TGG - chr1_4:2633680-2633699 None:intergenic 35.0%
! CAATACTTTGTTGTCCAAGT+TGG + chr1_4:2633722-2633741 Msa0143640:intron 35.0%
AATGTCTATCATCTCCAACT+TGG - chr1_4:2633739-2633758 None:intergenic 35.0%
CAATAGTGAAGTTACTTGCA+TGG - chr1_4:2629044-2629063 None:intergenic 35.0%
GTTTGTGTAGTACAACTCTT+AGG + chr1_4:2629094-2629113 Msa0143640:intron 35.0%
! CTAATCATATTTTGTGCTCG+AGG + chr1_4:2633991-2634010 Msa0143640:intron 35.0%
CAAACCAACAACAATCTTCA+TGG + chr1_4:2634261-2634280 Msa0143640:CDS 35.0%
! AATGTTGAGATGATAGTGCA+GGG - chr1_4:2634341-2634360 None:intergenic 35.0%
!! AATTTGATGGGTTTGAAGTG+AGG - chr1_4:2634386-2634405 None:intergenic 35.0%
TAAAGCTAAGAGTGGAAGAA+GGG - chr1_4:2634476-2634495 None:intergenic 35.0%
TTTGAGGAGTAGCATAATTG+AGG - chr1_4:2634536-2634555 None:intergenic 35.0%
GCTAAAGCTGATTGAAAAGT+TGG - chr1_4:2634744-2634763 None:intergenic 35.0%
CCAGAATTGCACTCCATATA+TGG - chr1_4:2625753-2625772 None:intergenic 40.0%
CCATATATGGAGTGCAATTC+TGG + chr1_4:2625750-2625769 Msa0143640:exon 40.0%
TGATGGAGATAGTGAACTCA+AGG + chr1_4:2625782-2625801 Msa0143640:CDS 40.0%
AAGAGAAGTGAGCATAGTAC+TGG + chr1_4:2625810-2625829 Msa0143640:CDS 40.0%
AGGAATTAACGACCTGATCA+TGG - chr1_4:2626338-2626357 None:intergenic 40.0%
AATTACCTTTCGTGCATGCA+AGG + chr1_4:2626443-2626462 Msa0143640:intron 40.0%
ACTGAAAGATCAATTGAGGC+TGG + chr1_4:2627700-2627719 Msa0143640:CDS 40.0%
ATCCTCGCCCAAAAATGATA+AGG + chr1_4:2627735-2627754 Msa0143640:CDS 40.0%
!! AACCTTATCATTTTTGGGCG+AGG - chr1_4:2627740-2627759 None:intergenic 40.0%
AACAAAAGCTCAAATGGGTG+AGG + chr1_4:2628003-2628022 Msa0143640:CDS 40.0%
TGTTACTAGGAACTCTTCCA+AGG - chr1_4:2628204-2628223 None:intergenic 40.0%
AACAAGGAAGAGTTGTCACT+TGG + chr1_4:2628295-2628314 Msa0143640:CDS 40.0%
AAATCAGGTAGCACAACTGA+AGG + chr1_4:2628343-2628362 Msa0143640:CDS 40.0%
AATCAGGTAGCACAACTGAA+GGG + chr1_4:2628344-2628363 Msa0143640:CDS 40.0%
TCAGAACTATTCACTGGACT+TGG - chr1_4:2628382-2628401 None:intergenic 40.0%
TAAGACAATGAGAGATGCTG+AGG + chr1_4:2628462-2628481 Msa0143640:CDS 40.0%
AAACTCCTGCAAAGAAAGCT+AGG + chr1_4:2628500-2628519 Msa0143640:CDS 40.0%
AACTCCTGCAAAGAAAGCTA+GGG + chr1_4:2628501-2628520 Msa0143640:CDS 40.0%
!! AGATGAATGATGGATGCCAA+TGG + chr1_4:2628828-2628847 Msa0143640:intron 40.0%
! TGTTTTCTAACCGGACATGA+TGG - chr1_4:2628923-2628942 None:intergenic 40.0%
ATCATGTCCGGTTAGAAAAC+AGG + chr1_4:2628922-2628941 Msa0143640:CDS 40.0%
GATCGCAAGAAAAAACGGTT+AGG - chr1_4:2629230-2629249 None:intergenic 40.0%
TAATTCGAACCAGTAAGGAG+TGG - chr1_4:2629487-2629506 None:intergenic 40.0%
TGATTTGAACCGTGATGCAT+GGG + chr1_4:2629597-2629616 Msa0143640:intron 40.0%
! GCAATCATCTGGTTTATTCG+TGG + chr1_4:2629626-2629645 Msa0143640:intron 40.0%
GGAAAAGGACAAGTGCAATT+AGG - chr1_4:2629877-2629896 None:intergenic 40.0%
! CAAGTCTCAAGTCCTTCTTT+TGG + chr1_4:2629993-2630012 Msa0143640:intron 40.0%
!! CTTGAGTCTTCTGAAACAGA+GGG - chr1_4:2630093-2630112 None:intergenic 40.0%
CTGGTTCCAAGAATAACTCT+AGG + chr1_4:2630169-2630188 Msa0143640:intron 40.0%
CAAACGTACAAACCATACTG+TGG + chr1_4:2630206-2630225 Msa0143640:intron 40.0%
!! AGTAGCATTTGCTGTAGGAT+TGG - chr1_4:2630274-2630293 None:intergenic 40.0%
!! GCATTAGTAGCATTTGCTGT+AGG - chr1_4:2630279-2630298 None:intergenic 40.0%
TTGTCAACTGCAGAATTCAC+AGG - chr1_4:2630327-2630346 None:intergenic 40.0%
! AGCAATATGGTTTGAGGTTG+GGG - chr1_4:2630445-2630464 None:intergenic 40.0%
! GAAGCAATATGGTTTGAGGT+TGG - chr1_4:2630447-2630466 None:intergenic 40.0%
! ACAGTTGATATACCTGAAGG+AGG - chr1_4:2630501-2630520 None:intergenic 40.0%
AACAGTACCAGCATGATGTA+TGG - chr1_4:2630670-2630689 None:intergenic 40.0%
TGCACTTTGGCACTTTAGAT+TGG + chr1_4:2631007-2631026 Msa0143640:intron 40.0%
GCACTTTGGCACTTTAGATT+GGG + chr1_4:2631008-2631027 Msa0143640:intron 40.0%
CACTTTGGCACTTTAGATTG+GGG + chr1_4:2631009-2631028 Msa0143640:intron 40.0%
ATGAATAGACACCTCAGCTT+TGG - chr1_4:2631300-2631319 None:intergenic 40.0%
! TCTACTCTAGCATTTTGCTG+AGG - chr1_4:2631464-2631483 None:intergenic 40.0%
GGCTATAAACCTGGTTACAA+AGG + chr1_4:2631758-2631777 Msa0143640:intron 40.0%
GATATAGTGCCAGGTATCAA+TGG - chr1_4:2631885-2631904 None:intergenic 40.0%
GGTGTAGAAATAGGAGAAGT+GGG - chr1_4:2631956-2631975 None:intergenic 40.0%
TGGTGTAGAAATAGGAGAAG+TGG - chr1_4:2631957-2631976 None:intergenic 40.0%
!! GCAGAAGATTCAGAAGTGTT+GGG - chr1_4:2632010-2632029 None:intergenic 40.0%
! AGCAGAAGATTCAGAAGTGT+TGG - chr1_4:2632011-2632030 None:intergenic 40.0%
ATCTTGTAAATAAGCAGGGG+TGG - chr1_4:2632092-2632111 None:intergenic 40.0%
CTTAATGCCTTGAGTAAGAC+TGG + chr1_4:2632301-2632320 Msa0143640:intron 40.0%
CTTGAGTAAGACTGGTACTT+GGG + chr1_4:2632309-2632328 Msa0143640:intron 40.0%
!! TCTGGCTTTATACCTCTCTA+TGG - chr1_4:2632413-2632432 None:intergenic 40.0%
! AGAGAGGTATAAAGCCAGAT+TGG + chr1_4:2632414-2632433 Msa0143640:intron 40.0%
AGTCAGGATTGTTCTTGCTT+TGG + chr1_4:2632510-2632529 Msa0143640:intron 40.0%
CTTTGGCCTCTATGCATAAT+TGG + chr1_4:2632527-2632546 Msa0143640:intron 40.0%
GAGATGCCAATTATGCATAG+AGG - chr1_4:2632536-2632555 None:intergenic 40.0%
! GTGAACAATGCCTTTTTGCA+TGG + chr1_4:2632568-2632587 Msa0143640:intron 40.0%
ACTTGATTGGGATTGGAATG+TGG - chr1_4:2632637-2632656 None:intergenic 40.0%
CAAGCAGGAAATGGTATGAA+AGG + chr1_4:2632695-2632714 Msa0143640:intron 40.0%
!! GTTGATGATGTGATCTTAGC+AGG + chr1_4:2632820-2632839 Msa0143640:intron 40.0%
GAAGTTGCTCATTCTTCATC+TGG + chr1_4:2632937-2632956 Msa0143640:intron 40.0%
TACTAATAGGCTTGGAATGG+AGG - chr1_4:2633017-2633036 None:intergenic 40.0%
GTGTACTAATAGGCTTGGAA+TGG - chr1_4:2633020-2633039 None:intergenic 40.0%
! AGAAGGTGTACTAATAGGCT+TGG - chr1_4:2633025-2633044 None:intergenic 40.0%
! GGATCAGAAGGTGTACTAAT+AGG - chr1_4:2633030-2633049 None:intergenic 40.0%
ATTCTGATGTTCCTGCTTAC+AGG + chr1_4:2633085-2633104 Msa0143640:intron 40.0%
AGATACTTGAAAGGATCTCC+AGG + chr1_4:2633234-2633253 Msa0143640:intron 40.0%
! ATTGAAGGGAAGCTTTTCGA+GGG - chr1_4:2633275-2633294 None:intergenic 40.0%
! AATTGAAGGGAAGCTTTTCG+AGG - chr1_4:2633276-2633295 None:intergenic 40.0%
CTGACCAGAAATAGATCTTC+TGG - chr1_4:2633340-2633359 None:intergenic 40.0%
! TTCTGGTCAGTGCTTCTTTT+TGG + chr1_4:2633350-2633369 Msa0143640:intron 40.0%
! TCTGGTCAGTGCTTCTTTTT+GGG + chr1_4:2633351-2633370 Msa0143640:intron 40.0%
GATCCATTGCAATTCACATG+AGG - chr1_4:2633463-2633482 None:intergenic 40.0%
ACAGTAGATAACAGGAGTCT+TGG - chr1_4:2633520-2633539 None:intergenic 40.0%
GCAGTTTCTCTCGTACAATA+TGG - chr1_4:2633617-2633636 None:intergenic 40.0%
TATTGTACGAGAGAAACTGC+AGG + chr1_4:2633617-2633636 Msa0143640:intron 40.0%
!! AAAATCAGCAAGCTGGTCTT+TGG - chr1_4:2633673-2633692 None:intergenic 40.0%
ATTTATCACCCTCCAACTTG+TGG + chr1_4:2633756-2633775 Msa0143640:intron 40.0%
TTTATCACCCTCCAACTTGT+GGG + chr1_4:2633757-2633776 Msa0143640:intron 40.0%
TCAGGTACAAAGATGTGTTG+AGG + chr1_4:2634089-2634108 Msa0143640:intron 40.0%
!! ACCTGATAATAGCATCGATG+CGG - chr1_4:2634205-2634224 None:intergenic 40.0%
!! TTGTTGTTGGTTTGTGCTGA+TGG - chr1_4:2634255-2634274 None:intergenic 40.0%
TAGGCCATGAAGATTGTTGT+TGG - chr1_4:2634268-2634287 None:intergenic 40.0%
! GAATGTTGAGATGATAGTGC+AGG - chr1_4:2634342-2634361 None:intergenic 40.0%
!! AAGAAGGGTATCTTGGTAGT+TGG - chr1_4:2634461-2634480 None:intergenic 40.0%
CTAAAGCTAAGAGTGGAAGA+AGG - chr1_4:2634477-2634496 None:intergenic 40.0%
AGGAGAACTAAAGCTAAGAG+TGG - chr1_4:2634484-2634503 None:intergenic 40.0%
CAATGCATGGGATTTGATTC+AGG - chr1_4:2634504-2634523 None:intergenic 40.0%
CTGAATCAAATCCCATGCAT+TGG + chr1_4:2634502-2634521 Msa0143640:CDS 40.0%
AGGAAGCTATTCCAATGCAT+GGG - chr1_4:2634516-2634535 None:intergenic 40.0%
GCAGCACTTTCTTCACTTAT+TGG + chr1_4:2634765-2634784 Msa0143640:CDS 40.0%
GGGAATCAAAATCAAAGTGC+AGG + chr1_4:2634801-2634820 Msa0143640:CDS 40.0%
CCATTCTGTGTATTGTTCAC+TGG - chr1_4:2634945-2634964 None:intergenic 40.0%
CCAGTGAACAATACACAGAA+TGG + chr1_4:2634942-2634961 Msa0143640:CDS 40.0%
!! GCACTTTTAGGTGCAGAAAA+TGG - chr1_4:2634996-2635015 None:intergenic 40.0%
TTGTCACTATTATCACCACC+AGG - chr1_4:2635029-2635048 None:intergenic 40.0%
! AATTCTGGGAGATCTGGTGA+TGG + chr1_4:2625765-2625784 Msa0143640:CDS 45.0%
! TTAGGGGTTTGTTTGGGCTA+TGG - chr1_4:2626749-2626768 None:intergenic 45.0%
TTTGTGTGTGGCACATGCAT+AGG - chr1_4:2627302-2627321 None:intergenic 45.0%
AATGTAAGGAACAAGGAGCC+TGG + chr1_4:2627543-2627562 Msa0143640:intron 45.0%
TGGATGCAAAACAATTGGCC+AGG - chr1_4:2627564-2627583 None:intergenic 45.0%
GGGTGCTTCCTGTAAAACAT+AGG - chr1_4:2627671-2627690 None:intergenic 45.0%
CATTTCCAGTGCTCGGTATT+CGG - chr1_4:2628077-2628096 None:intergenic 45.0%
! GGAAGAGTTGTCACTTGGAT+TGG + chr1_4:2628300-2628319 Msa0143640:CDS 45.0%
! CAAACCCTAGCTTTCTTTGC+AGG - chr1_4:2628508-2628527 None:intergenic 45.0%
GGATGCCAATGGAGAAAGTA+TGG + chr1_4:2628839-2628858 Msa0143640:CDS 45.0%
TGCAACGATAGTAAGCTCGA+GGG - chr1_4:2628892-2628911 None:intergenic 45.0%
CCAGAGAAGATGAATTGCAG+CGG - chr1_4:2629278-2629297 None:intergenic 45.0%
ACAGAGTTTGGACCTTCACT+AGG - chr1_4:2629454-2629473 None:intergenic 45.0%
TAGTGAAGGTCCAAACTCTG+TGG + chr1_4:2629453-2629472 Msa0143640:intron 45.0%
GGAGTAACTACCACAGAGTT+TGG - chr1_4:2629466-2629485 None:intergenic 45.0%
GTAGTTACTCCACTCCTTAC+TGG + chr1_4:2629475-2629494 Msa0143640:intron 45.0%
CGAGGTAATTCGAACCAGTA+AGG - chr1_4:2629492-2629511 None:intergenic 45.0%
CGGTTCAAATCAGCAAGATC+AGG - chr1_4:2629589-2629608 None:intergenic 45.0%
! CTGATTTGAACCGTGATGCA+TGG + chr1_4:2629596-2629615 Msa0143640:intron 45.0%
GAGTTCATCCCAAACGTCAA+TGG - chr1_4:2629707-2629726 None:intergenic 45.0%
GGACAAGTGCAATTAGGCAT+TGG - chr1_4:2629871-2629890 None:intergenic 45.0%
CAGATCTCATAGCTTCACAC+CGG - chr1_4:2629903-2629922 None:intergenic 45.0%
!! GCTTGAGTCTTCTGAAACAG+AGG - chr1_4:2630094-2630113 None:intergenic 45.0%
GTTGACAATTCTCCTCCTAC+TGG + chr1_4:2630339-2630358 Msa0143640:intron 45.0%
! GCAATATGGTTTGAGGTTGG+GGG - chr1_4:2630444-2630463 None:intergenic 45.0%
CCAGAGGAAGAAGGGAAATT+GGG - chr1_4:2630474-2630493 None:intergenic 45.0%
ACCAGAGGAAGAAGGGAAAT+TGG - chr1_4:2630475-2630494 None:intergenic 45.0%
TACAGGATCTGATTACCCAC+AGG + chr1_4:2630820-2630839 Msa0143640:intron 45.0%
CTGATTACCCACAGGATGAT+TGG + chr1_4:2630828-2630847 Msa0143640:intron 45.0%
! TACCCACAGGATGATTGGTT+TGG + chr1_4:2630833-2630852 Msa0143640:intron 45.0%
AGCCAAACCAATCATCCTGT+GGG - chr1_4:2630838-2630857 None:intergenic 45.0%
!! ATTGGTTTGGCTGATCCTCA+TGG + chr1_4:2630846-2630865 Msa0143640:intron 45.0%
AAGTGCCAAAGTGCAGTTTC+AGG - chr1_4:2631002-2631021 None:intergenic 45.0%
CAGGGCCATTATCACTTCTA+AGG - chr1_4:2631376-2631395 None:intergenic 45.0%
CATCTACCATCCAATCTCAC+AGG + chr1_4:2631696-2631715 Msa0143640:intron 45.0%
TTTGGTCCTGTGAGATTGGA+TGG - chr1_4:2631705-2631724 None:intergenic 45.0%
GAAGTTTGGTCCTGTGAGAT+TGG - chr1_4:2631709-2631728 None:intergenic 45.0%
! CCTTGCTCTAGGTTGAAGTT+TGG - chr1_4:2631723-2631742 None:intergenic 45.0%
CCAAACTTCAACCTAGAGCA+AGG + chr1_4:2631720-2631739 Msa0143640:intron 45.0%
ATCAATGGCAGAAGTAGGAG+TGG - chr1_4:2631870-2631889 None:intergenic 45.0%
CAGGTATCAATGGCAGAAGT+AGG - chr1_4:2631875-2631894 None:intergenic 45.0%
CTACTTCTGCCATTGATACC+TGG + chr1_4:2631873-2631892 Msa0143640:intron 45.0%
GGGTCAGGATCATCAACAAA+AGG - chr1_4:2631923-2631942 None:intergenic 45.0%
GAAATAGGAGAAGTGGGAAG+AGG - chr1_4:2631950-2631969 None:intergenic 45.0%
ACACCAGAAGATTCACCTCA+TGG + chr1_4:2631971-2631990 Msa0143640:intron 45.0%
GAACCATGAGGTGAATCTTC+TGG - chr1_4:2631977-2631996 None:intergenic 45.0%
GGTGAATTGAGTGAACCATG+AGG - chr1_4:2631989-2632008 None:intergenic 45.0%
ACAGGTGGAGGAGCAATAAT+AGG - chr1_4:2632046-2632065 None:intergenic 45.0%
AGTCTAGTAGAGACTCTGAC+AGG - chr1_4:2632064-2632083 None:intergenic 45.0%
!! ATTTAGGCTCAGGTTGAGTG+TGG - chr1_4:2632228-2632247 None:intergenic 45.0%
TCAGTGAAGGATTTAGGCTC+AGG - chr1_4:2632238-2632257 None:intergenic 45.0%
CCAAGTACCAGTCTTACTCA+AGG - chr1_4:2632311-2632330 None:intergenic 45.0%
CCTTGAGTAAGACTGGTACT+TGG + chr1_4:2632308-2632327 Msa0143640:intron 45.0%
TGGGTTTAACATGAGGTGGA+AGG - chr1_4:2632345-2632364 None:intergenic 45.0%
CCTATGGGTTTAACATGAGG+TGG - chr1_4:2632349-2632368 None:intergenic 45.0%
CCACCTCATGTTAAACCCAT+AGG + chr1_4:2632346-2632365 Msa0143640:intron 45.0%
CAGCCTATGGGTTTAACATG+AGG - chr1_4:2632352-2632371 None:intergenic 45.0%
ATGTTAAACCCATAGGCTGC+AGG + chr1_4:2632353-2632372 Msa0143640:intron 45.0%
ATGCTGATGGTTCCATAGAG+AGG + chr1_4:2632398-2632417 Msa0143640:intron 45.0%
! TAAAGCCAGATTGGTTGCCA+AGG + chr1_4:2632423-2632442 Msa0143640:intron 45.0%
! AAAGCCAGATTGGTTGCCAA+GGG + chr1_4:2632424-2632443 Msa0143640:intron 45.0%
AGCAAGAACAATCCTGACTG+TGG - chr1_4:2632509-2632528 None:intergenic 45.0%
! ATGGATTGAAGCAAGCAAGC+AGG + chr1_4:2632680-2632699 Msa0143640:intron 45.0%
TGAAGCAAGCAAGCAGGAAA+TGG + chr1_4:2632686-2632705 Msa0143640:intron 45.0%
GATCTTAGCAGGGAACTCTT+TGG + chr1_4:2632831-2632850 Msa0143640:intron 45.0%
CCAATCAATCTCCTGTAAGC+AGG - chr1_4:2633099-2633118 None:intergenic 45.0%
CCTGCTTACAGGAGATTGAT+TGG + chr1_4:2633096-2633115 Msa0143640:intron 45.0%
GATGAATGTGATATCTGGCC+TGG - chr1_4:2633145-2633164 None:intergenic 45.0%
! AAGGCTTTTCAGATGCAGAC+TGG + chr1_4:2633298-2633317 Msa0143640:intron 45.0%
! AGGCTTTTCAGATGCAGACT+GGG + chr1_4:2633299-2633318 Msa0143640:intron 45.0%
TGGGCAAGTCACTCATTTCT+TGG + chr1_4:2633370-2633389 Msa0143640:intron 45.0%
GCAAGTCACTCATTTCTTGG+AGG + chr1_4:2633373-2633392 Msa0143640:intron 45.0%
TGTCAGCAAATCCTCTTCTG+AGG + chr1_4:2633413-2633432 Msa0143640:intron 45.0%
TCTATACTCAGCCTCAGAAG+AGG - chr1_4:2633427-2633446 None:intergenic 45.0%
TGAGGCTGAGTATAGAGCTT+TGG + chr1_4:2633431-2633450 Msa0143640:intron 45.0%
CAGCCTCATGTGAATTGCAA+TGG + chr1_4:2633457-2633476 Msa0143640:intron 45.0%
!! AGCTGGTCTTTGGAAGAGAT+AGG - chr1_4:2633663-2633682 None:intergenic 45.0%
TTATCACCCTCCAACTTGTG+GGG + chr1_4:2633758-2633777 Msa0143640:intron 45.0%
! TGATGGCATTGAACCAGAGT+TGG - chr1_4:2634238-2634257 None:intergenic 45.0%
! ATGATAGTGCAGGGTTGGAT+AGG - chr1_4:2634332-2634351 None:intergenic 45.0%
! TTGAGATGATAGTGCAGGGT+TGG - chr1_4:2634337-2634356 None:intergenic 45.0%
GTGAGGTCAAGAGTGATAGT+TGG - chr1_4:2634369-2634388 None:intergenic 45.0%
!! AGAGTGGAAGAAGGGTATCT+TGG - chr1_4:2634468-2634487 None:intergenic 45.0%
GAGGAAGCTATTCCAATGCA+TGG - chr1_4:2634517-2634536 None:intergenic 45.0%
!! GAAATGGGCTGAGATGTTTC+AGG + chr1_4:2634845-2634864 Msa0143640:CDS 45.0%
GGTGCAGAAAATGGCAAAGA+AGG - chr1_4:2634987-2635006 None:intergenic 45.0%
!!! GGAGATGCAGAAGCACTTTT+AGG - chr1_4:2635008-2635027 None:intergenic 45.0%
!! AAAAGTGCTTCTGCATCTCC+TGG + chr1_4:2635008-2635027 Msa0143640:CDS 45.0%
!! AATATATTATATATAAATAG+GGG + chr1_4:2626926-2626945 Msa0143640:intron 5.0%
!!! TATTTTCAATTTAATATTTA+CGG - chr1_4:2627090-2627109 None:intergenic 5.0%
!! AATTCAATAAAAATTAATAA+CGG - chr1_4:2627777-2627796 None:intergenic 5.0%
!!! ATTAATTTTTATTGAATTAT+TGG + chr1_4:2627779-2627798 Msa0143640:intron 5.0%
! GAGTGCAATTCTGGGAGATC+TGG + chr1_4:2625759-2625778 Msa0143640:CDS 50.0%
GTTTGCCTTGCATGCACGAA+AGG - chr1_4:2626451-2626470 None:intergenic 50.0%
TTGGGCGAGGATATTGTGCT+TGG - chr1_4:2627727-2627746 None:intergenic 50.0%
AATGACCGAATACCGAGCAC+TGG + chr1_4:2628069-2628088 Msa0143640:CDS 50.0%
! GATCTTGTTTCCCTCAGCCT+TGG + chr1_4:2628184-2628203 Msa0143640:CDS 50.0%
AGGAACTCTTCCAAGGCTGA+GGG - chr1_4:2628197-2628216 None:intergenic 50.0%
TAGGAACTCTTCCAAGGCTG+AGG - chr1_4:2628198-2628217 None:intergenic 50.0%
AGCAAGATGTGACACCCCAA+CGG + chr1_4:2628534-2628553 Msa0143640:CDS 50.0%
GTGCAACGATAGTAAGCTCG+AGG - chr1_4:2628893-2628912 None:intergenic 50.0%
CACAGTTGCACCATCATGTC+CGG + chr1_4:2628910-2628929 Msa0143640:CDS 50.0%
CCGCTGCAATTCATCTTCTC+TGG + chr1_4:2629275-2629294 Msa0143640:intron 50.0%
! CTGGTTCGAATTACCTCGCA+TGG + chr1_4:2629494-2629513 Msa0143640:intron 50.0%
AGATCCATGCAACGTGCACT+TGG + chr1_4:2629520-2629539 Msa0143640:intron 50.0%
TGAACCGTGATGCATGGGAA+CGG + chr1_4:2629602-2629621 Msa0143640:intron 50.0%
ATGGGAACGGTGCAATCATC+TGG + chr1_4:2629615-2629634 Msa0143640:intron 50.0%
ATGAGCACGCCATTGACGTT+TGG + chr1_4:2629695-2629714 Msa0143640:intron 50.0%
TGAGCACGCCATTGACGTTT+GGG + chr1_4:2629696-2629715 Msa0143640:intron 50.0%
! GCACTTGTCCTTTTCCATGC+CGG + chr1_4:2629881-2629900 Msa0143640:intron 50.0%
!! TCCTCCTACTGGTTTGACTC+AGG + chr1_4:2630350-2630369 Msa0143640:intron 50.0%
TCCTGAGTCAAACCAGTAGG+AGG - chr1_4:2630354-2630373 None:intergenic 50.0%
TGCTCCTGAGTCAAACCAGT+AGG - chr1_4:2630357-2630376 None:intergenic 50.0%
CCCAATTTCCCTTCTTCCTC+TGG + chr1_4:2630471-2630490 Msa0143640:intron 50.0%
!! GAGGAGTACCAGAGGAAGAA+GGG - chr1_4:2630482-2630501 None:intergenic 50.0%
CAGCCAAACCAATCATCCTG+TGG - chr1_4:2630839-2630858 None:intergenic 50.0%
ATGGCAGAAGTAGGAGTGGA+AGG - chr1_4:2631866-2631885 None:intergenic 50.0%
TGAGGGAGTGATATAGTGCC+AGG - chr1_4:2631894-2631913 None:intergenic 50.0%
AGGAGAAGTGGGAAGAGGTA+GGG - chr1_4:2631945-2631964 None:intergenic 50.0%
TAGGAGAAGTGGGAAGAGGT+AGG - chr1_4:2631946-2631965 None:intergenic 50.0%
CTAGTAGAGACTCTGACAGG+TGG - chr1_4:2632061-2632080 None:intergenic 50.0%
TTAAACCCATAGGCTGCAGG+TGG + chr1_4:2632356-2632375 Msa0143640:intron 50.0%
TAAACCCATAGGCTGCAGGT+GGG + chr1_4:2632357-2632376 Msa0143640:intron 50.0%
TAAACCCACCTGCAGCCTAT+GGG - chr1_4:2632364-2632383 None:intergenic 50.0%
GTATCCCTTGGCAACCAATC+TGG - chr1_4:2632431-2632450 None:intergenic 50.0%
ACTGTGGTAAGCTTAGCCAC+TGG - chr1_4:2632493-2632512 None:intergenic 50.0%
TGGCTAAGCTTACCACAGTC+AGG + chr1_4:2632494-2632513 Msa0143640:intron 50.0%
TTGGAATGTGGAACACCAGG+AGG - chr1_4:2632625-2632644 None:intergenic 50.0%
GGATTGGAATGTGGAACACC+AGG - chr1_4:2632628-2632647 None:intergenic 50.0%
CTTAGCAGGGAACTCTTTGG+AGG + chr1_4:2632834-2632853 Msa0143640:intron 50.0%
GAATGTGATATCTGGCCTGG+TGG - chr1_4:2633142-2633161 None:intergenic 50.0%
TTGAAAGGATCTCCAGGTCG+TGG + chr1_4:2633240-2633259 Msa0143640:intron 50.0%
! TTTTCAGATGCAGACTGGGC+AGG + chr1_4:2633303-2633322 Msa0143640:intron 50.0%
TTGGTGCGCTCATGAAACAC+AGG - chr1_4:2633576-2633595 None:intergenic 50.0%
TATCACCCTCCAACTTGTGG+GGG + chr1_4:2633759-2633778 Msa0143640:intron 50.0%
! ATAGTCCCCCACAAGTTGGA+GGG - chr1_4:2633767-2633786 None:intergenic 50.0%
! AATAGTCCCCCACAAGTTGG+AGG - chr1_4:2633768-2633787 None:intergenic 50.0%
TGCAATAGTCCCCCACAAGT+TGG - chr1_4:2633771-2633790 None:intergenic 50.0%
TTGCTGAAAGTGGAAGGCTG+TGG - chr1_4:2634155-2634174 None:intergenic 50.0%
TGGCTGTTGCTGAAAGTGGA+AGG - chr1_4:2634161-2634180 None:intergenic 50.0%
TCCACTTTCAGCAACAGCCA+TGG + chr1_4:2634161-2634180 Msa0143640:CDS 50.0%
! GCCGCATCGATGCTATTATC+AGG + chr1_4:2634201-2634220 Msa0143640:CDS 50.0%
GGTTCATCAACCTCCAACTC+TGG + chr1_4:2634222-2634241 Msa0143640:CDS 50.0%
! TGGCATTGAACCAGAGTTGG+AGG - chr1_4:2634235-2634254 None:intergenic 50.0%
TTAACGTGGGGGCCATGATC+AGG + chr1_4:2626323-2626342 Msa0143640:intron 55.0%
! GGGGTTTGTTTGGGCTATGG+AGG - chr1_4:2626746-2626765 None:intergenic 55.0%
CGATAGTAAGCTCGAGGGCA+AGG - chr1_4:2628887-2628906 None:intergenic 55.0%
GCATGGATCTACTCCATGCG+AGG - chr1_4:2629510-2629529 None:intergenic 55.0%
TGCACCGTTCCCATGCATCA+CGG - chr1_4:2629609-2629628 None:intergenic 55.0%
GCTTCACACCGGCATGGAAA+AGG - chr1_4:2629892-2629911 None:intergenic 55.0%
CTCATAGCTTCACACCGGCA+TGG - chr1_4:2629898-2629917 None:intergenic 55.0%
ATCTGCACGCGCACATCGTA+TGG + chr1_4:2629918-2629937 Msa0143640:intron 55.0%
! TGGTTTGAGGTTGGGGGAGA+AGG - chr1_4:2630438-2630457 None:intergenic 55.0%
!! GGAGGAGTACCAGAGGAAGA+AGG - chr1_4:2630483-2630502 None:intergenic 55.0%
TCCTCTGGTACTCCTCCTTC+AGG + chr1_4:2630486-2630505 Msa0143640:intron 55.0%
!! ACCTGAAGGAGGAGTACCAG+AGG - chr1_4:2630490-2630509 None:intergenic 55.0%
GGTTTGGCTGATCCTCATGG+TGG + chr1_4:2630849-2630868 Msa0143640:intron 55.0%
GTAGGAGTGGAAGGCTGGTA+AGG - chr1_4:2631857-2631876 None:intergenic 55.0%
CAGAAGTAGGAGTGGAAGGC+TGG - chr1_4:2631862-2631881 None:intergenic 55.0%
GAGAAGTGGGAAGAGGTAGG+GGG - chr1_4:2631943-2631962 None:intergenic 55.0%
GGAGAAGTGGGAAGAGGTAG+GGG - chr1_4:2631944-2631963 None:intergenic 55.0%
GTAGAGACTCTGACAGGTGG+AGG - chr1_4:2632058-2632077 None:intergenic 55.0%
GTAAACCCACCTGCAGCCTA+TGG - chr1_4:2632365-2632384 None:intergenic 55.0%
GGGAAGAAGATACCACGACC+TGG - chr1_4:2633255-2633274 None:intergenic 55.0%
GCCATGGCTGTTGCTGAAAG+TGG - chr1_4:2634165-2634184 None:intergenic 55.0%
CATGGCTTCCACAACTTCCG+CGG + chr1_4:2634179-2634198 Msa0143640:CDS 55.0%
!! TAATAGCATCGATGCGGCCG+CGG - chr1_4:2634199-2634218 None:intergenic 55.0%
AGTGCTTCTGCATCTCCTGG+TGG + chr1_4:2635011-2635030 Msa0143640:CDS 55.0%
TGCACGCGCACATCGTATGG+AGG + chr1_4:2629921-2629940 Msa0143640:intron 60.0%
TGAGGTTGGGGGAGAAGGAG+TGG - chr1_4:2630433-2630452 None:intergenic 60.0%
ATGCAGACTGGGCAGGTTGC+AGG + chr1_4:2633310-2633329 Msa0143640:intron 60.0%
TGCAGACTGGGCAGGTTGCA+GGG + chr1_4:2633311-2633330 Msa0143640:intron 60.0%
CGCGGAAGTTGTGGAAGCCA+TGG - chr1_4:2634181-2634200 None:intergenic 60.0%
CGCGCCAAGTGCACGTTGCA+TGG - chr1_4:2629527-2629546 None:intergenic 65.0%
GTGGGAAGAGGTAGGGGGTC+AGG - chr1_4:2631938-2631957 None:intergenic 65.0%
CGATGCGGCCGCGGAAGTTG+TGG - chr1_4:2634190-2634209 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 2625706 2635058 2625706 ID=Msa0143640;Name=Msa0143640
chr1_4 mRNA 2625706 2635058 2625706 ID=Msa0143640-mRNA-1;Parent=Msa0143640;Name=Msa0143640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=50|1|0.6|1|1|1|5|0|616
chr1_4 exon 2625706 2625878 2625706 ID=Msa0143640-mRNA-1:exon:1148;Parent=Msa0143640-mRNA-1
chr1_4 exon 2627682 2627756 2627682 ID=Msa0143640-mRNA-1:exon:1149;Parent=Msa0143640-mRNA-1
chr1_4 exon 2627983 2628555 2627983 ID=Msa0143640-mRNA-1:exon:1150;Parent=Msa0143640-mRNA-1
chr1_4 exon 2628830 2628943 2628830 ID=Msa0143640-mRNA-1:exon:1151;Parent=Msa0143640-mRNA-1
chr1_4 exon 2634093 2635058 2634093 ID=Msa0143640-mRNA-1:exon:1152;Parent=Msa0143640-mRNA-1
chr1_4 five_prime_UTR 2625706 2625755 2625706 ID=Msa0143640-mRNA-1:five_prime_utr;Parent=Msa0143640-mRNA-1
chr1_4 CDS 2625756 2625878 2625756 ID=Msa0143640-mRNA-1:cds;Parent=Msa0143640-mRNA-1
chr1_4 CDS 2627682 2627756 2627682 ID=Msa0143640-mRNA-1:cds;Parent=Msa0143640-mRNA-1
chr1_4 CDS 2627983 2628555 2627983 ID=Msa0143640-mRNA-1:cds;Parent=Msa0143640-mRNA-1
chr1_4 CDS 2628830 2628943 2628830 ID=Msa0143640-mRNA-1:cds;Parent=Msa0143640-mRNA-1
chr1_4 CDS 2634093 2635058 2634093 ID=Msa0143640-mRNA-1:cds;Parent=Msa0143640-mRNA-1
Gene Sequence

>Msa0143640

ATGGAGTGCAATTCTGGGAGATCTGGTGATGGAGATAGTGAACTCAAGGAAGATAAGAGAAGTGAGCATAGTACTGGTGATGATCATGAAAGTCATCATCAAAAAAAGGAGACTATTGTTGAGGAAGCACCCATTGCTAATACTGAAAGATCAATTGAGGCTGGTCCAAGCACAATATCCTCGCCCAAAAATGATAAGGTTGATGATCAGCTTGAGACAACAAAAGCTCAAATGGGTGAGGTGAGAAAAGAAAATCAACGGTTAAAGATGTGCTTGAACAAAATAATGACCGAATACCGAGCACTGGAAATGCAATTTAACAATATGGTTAAGCAAGAAACAAAAAAGAGCAATGTTGATCACAATGATAATAACCATGAAGAAATAAATGCAGAATCAGATCTTGTTTCCCTCAGCCTTGGAAGAGTTCCTAGTAACAATATTCCAAAAAATGATCAAGAGAAAGTTAACAAAGTGTCTAAACTAGCATTGAATAATGATGAAGAATTCAACAAGGAAGAGTTGTCACTTGGATTGGAATGTAAATTTGAAACATCAAAATCAGGTAGCACAACTGAAGGGTTACCAAATATTCCAAGTCCAGTGAATAGTTCTGAAGTTGTTCCAACAAAGGATGATGAAGTTGTAGAGACTTGGCCACCAAGTAAGACACTCAATAAGACAATGAGAGATGCTGAGGAAGAAGTTGCTCAACAAACTCCTGCAAAGAAAGCTAGGGTTTGTGTTAGAGCAAGATGTGACACCCCAACGATGAATGATGGATGCCAATGGAGAAAGTATGGACAAAAAATTGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGTCCGGTTAGAAAACAGGTACAAAGATGTGTTGAGGACATGTCTATTCTAATCACAACATACGAAGGGACACACAACCACAGCCTTCCACTTTCAGCAACAGCCATGGCTTCCACAACTTCCGCGGCCGCATCGATGCTATTATCAGGTTCATCAACCTCCAACTCTGGTTCAATGCCATCAGCACAAACCAACAACAATCTTCATGGCCTAAACTTTTATCTACCAGATGGTTCAAAATCAAATCAATTATACCTATCCAACCCTGCACTATCATCTCAACATTCACATCCAACTATCACTCTTGACCTCACTTCAAACCCATCAAATTCTTCAACATCATCGCCCTTTGTTAGATTCAATTCAAGCTACAACAACAATAACCAACTACCAAGATACCCTTCTTCCACTCTTAGCTTTAGTTCTCCTGAATCAAATCCCATGCATTGGAATAGCTTCCTCAATTATGCTACTCCTCAAAATCAACCATATAGTAATAATAGGAACAATAATAATCTAAGCACTTTAAACTTTGGTAGACAAAATACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAACAATAGTTCAAACATTTCACAACATGTAGGTTTACAAGATAGTACTATATCTGCAGCAACAAAAGCTATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTTCTTCACTTATTGGAAACACTAATCAAGGGAATCAAAATCAAAGTGCAGGAGAAAATTTGAATCAGAAAATGAAATGGGCTGAGATGTTTCAGGTTTCTTCTACTTCATTGCCTTCATCAAGTTCTAAAGTAAATGGTTGTGGTTCAAGTTTCTTGAACAAAACGGCACCAGTGAACAATACACAGAATGGAAGTTTGATGTTGTTATCTCCTTCTTTGCCATTTTCTGCACCTAAAAGTGCTTCTGCATCTCCTGGTGGTGATAATAGTGACAATACCAATTAA
Protein sequence

>Msa0143640

MECNSGRSGDGDSELKEDKRSEHSTGDDHESHHQKKETIVEEAPIANTERSIEAGPSTISSPKNDKVDDQLETTKAQMGEVRKENQRLKMCLNKIMTEYRALEMQFNNMVKQETKKSNVDHNDNNHEEINAESDLVSLSLGRVPSNNIPKNDQEKVNKVSKLALNNDEEFNKEELSLGLECKFETSKSGSTTEGLPNIPSPVNSSEVVPTKDDEVVETWPPSKTLNKTMRDAEEEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVEDMSILITTYEGTHNHSLPLSATAMASTTSAAASMLLSGSSTSNSGSMPSAQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTSNPSNSSTSSPFVRFNSSYNNNNQLPRYPSSTLSFSSPESNPMHWNSFLNYATPQNQPYSNNRNNNNLSTLNFGRQNTMESIYQTYMQKNNNSSNISQHVGLQDSTISAATKAITADPTFQSALAAALSSLIGNTNQGNQNQSAGENLNQKMKWAEMFQVSSTSLPSSSSKVNGCGSSFLNKTAPVNNTQNGSLMLLSPSLPFSAPKSASASPGGDNSDNTN*