AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1107510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107510 MtrunA17_Chr7g0240991 98.067 569 11 0 4 572 3 571 0.0 1160
Msa1107510 MtrunA17_Chr7g0240971 64.818 577 191 5 1 572 1 570 0.0 740
Msa1107510 MtrunA17_Chr4g0008521 56.140 570 236 9 10 572 10 572 0.0 656
Msa1107510 MtrunA17_Chr5g0437681 46.316 570 281 9 14 572 12 567 0.0 538
Msa1107510 MtrunA17_Chr5g0431581 46.341 574 285 9 5 572 4 560 0.0 536
Msa1107510 MtrunA17_Chr3g0114211 47.203 572 270 12 14 572 18 570 0.0 530
Msa1107510 MtrunA17_Chr7g0238941 45.326 567 292 9 14 572 22 578 2.13e-176 511
Msa1107510 MtrunA17_Chr5g0404361 46.195 565 279 12 12 572 68 611 3.91e-175 509
Msa1107510 MtrunA17_Chr7g0238351 45.078 579 295 11 8 572 12 581 1.11e-173 504
Msa1107510 MtrunA17_Chr7g0237491 44.463 587 295 11 6 572 5 580 7.22e-173 502
Msa1107510 MtrunA17_Chr7g0237441 44.149 564 296 9 19 572 26 580 2.19e-172 501
Msa1107510 MtrunA17_Chr5g0429511 44.599 574 297 9 1 572 4 558 6.99e-172 498
Msa1107510 MtrunA17_Chr4g0005921 44.912 570 293 10 9 572 3 557 2.87e-170 494
Msa1107510 MtrunA17_Chr4g0031901 45.009 551 288 8 13 558 31 571 1.38e-168 491
Msa1107510 MtrunA17_Chr5g0404341 45.035 564 286 11 14 572 22 566 2.73e-168 489
Msa1107510 MtrunA17_Chr7g0238981 43.649 559 297 8 23 572 44 593 1.28e-166 486
Msa1107510 MtrunA17_Chr3g0104061 44.746 552 284 11 24 572 23 556 4.78e-166 483
Msa1107510 MtrunA17_Chr2g0278811 43.419 585 288 9 21 572 33 607 3.48e-165 483
Msa1107510 MtrunA17_Chr5g0436461 44.700 566 288 12 12 572 9 554 1.89e-161 472
Msa1107510 MtrunA17_Chr8g0346581 41.409 582 316 10 1 572 5 571 2.02e-152 449
Msa1107510 MtrunA17_Chr3g0133861 44.118 340 169 11 230 562 5 330 3.20e-81 258
Msa1107510 MtrunA17_Chr8g0382691 29.749 558 317 17 41 563 49 566 1.91e-65 223
Msa1107510 MtrunA17_Chr3g0133871 51.531 196 92 3 12 204 17 212 1.13e-61 203
Msa1107510 MtrunA17_Chr3g0118321 29.828 580 342 19 1 550 1 545 1.39e-60 210
Msa1107510 MtrunA17_Chr3g0118331 27.539 581 350 18 1 550 4 544 1.54e-51 186
Msa1107510 MtrunA17_Chr5g0436431 39.004 241 131 6 290 530 4 228 5.74e-45 159
Msa1107510 MtrunA17_Chr1g0157341 28.519 540 333 19 3 537 6 497 2.67e-41 157
Msa1107510 MtrunA17_Chr8g0374261 27.405 551 327 19 12 545 10 504 5.40e-41 155
Msa1107510 MtrunA17_Chr3g0143671 28.685 502 307 17 40 537 44 498 7.86e-41 155
Msa1107510 MtrunA17_Chr8g0374271 26.538 520 332 14 29 545 34 506 3.77e-39 150
Msa1107510 MtrunA17_Chr4g0024861 27.163 497 311 16 40 532 41 490 4.40e-39 150
Msa1107510 MtrunA17_Chr4g0056511 28.970 573 357 20 12 572 15 549 1.47e-38 149
Msa1107510 MtrunA17_Chr4g0038671 27.767 497 307 18 40 532 44 492 7.35e-37 144
Msa1107510 MtrunA17_Chr3g0079321 27.051 573 368 18 13 572 16 551 2.76e-35 140
Msa1107510 MtrunA17_Chr2g0322441 26.834 518 310 16 28 532 32 493 2.82e-35 139
Msa1107510 MtrunA17_Chr4g0043261 27.239 547 339 19 11 545 5 504 2.00e-34 137
Msa1107510 MtrunA17_Chr3g0121171 26.902 539 338 17 26 554 1176 1668 2.79e-34 139
Msa1107510 MtrunA17_Chr3g0121171 26.902 539 338 18 26 554 26 518 1.22e-33 137
Msa1107510 MtrunA17_Chr3g0121171 26.531 539 340 17 26 554 601 1093 3.99e-33 135
Msa1107510 MtrunA17_Chr3g0121171 26.294 483 300 17 82 554 1798 2234 3.47e-29 123
Msa1107510 MtrunA17_Chr3g0121161 26.716 539 339 17 26 554 66 558 4.46e-34 136
Msa1107510 MtrunA17_Chr3g0121151 26.531 539 340 17 26 554 66 558 3.11e-33 134
Msa1107510 MtrunA17_Chr5g0402831 25.709 529 324 16 28 545 33 503 3.39e-33 133
Msa1107510 MtrunA17_Chr4g0043251 26.902 539 315 23 44 562 45 524 4.15e-32 130
Msa1107510 MtrunA17_Chr7g0234061 27.757 526 330 17 32 546 35 521 2.77e-31 128
Msa1107510 MtrunA17_Chr4g0075071 26.326 509 300 18 40 532 45 494 8.49e-31 126
Msa1107510 MtrunA17_Chr4g0024641 25.499 451 284 17 86 532 11 413 4.49e-25 110
Msa1107510 MtrunA17_Chr3g0118351 28.614 339 191 14 236 550 5 316 2.68e-24 104
Msa1107510 MtrunA17_Chr3g0118341 34.831 178 106 8 1 172 1 174 5.05e-22 94.7
Msa1107510 MtrunA17_Chr1g0197301 26.053 380 212 13 211 572 1 329 1.88e-20 92.8
Msa1107510 MtrunA17_Chr1g0197311 25.000 240 140 7 13 215 7 243 2.80e-16 79.0
Msa1107510 MtrunA17_Chr7g0268321 78.571 42 9 0 116 157 1 42 6.07e-16 72.4
Msa1107510 MtrunA17_Chr4g0075781 32.847 137 78 4 150 283 24 149 8.11e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107510 AT5G01050.1 53.968 567 243 7 12 572 14 568 0.0 622
Msa1107510 AT5G01040.1 53.014 564 251 5 12 572 14 566 0.0 621
Msa1107510 AT3G09220.1 54.628 551 233 9 11 555 11 550 0.0 606
Msa1107510 AT2G40370.1 44.369 586 301 9 2 572 5 580 0.0 533
Msa1107510 AT2G30210.1 46.466 566 277 10 18 572 20 570 0.0 528
Msa1107510 AT5G05390.1 46.208 567 285 9 12 572 13 565 0.0 526
Msa1107510 AT5G07130.1 45.000 580 291 13 8 572 3 569 3.48e-176 510
Msa1107510 AT2G29130.1 45.172 580 293 11 9 572 3 573 4.06e-176 510
Msa1107510 AT3G09220.2 54.428 463 194 9 99 555 2 453 2.32e-172 497
Msa1107510 AT5G60020.1 44.293 587 302 11 1 572 1 577 8.55e-172 499
Msa1107510 AT5G03260.1 46.751 554 274 12 22 572 22 557 7.94e-171 496
Msa1107510 AT5G60020.3 45.750 553 276 10 35 572 2 545 4.15e-170 494
Msa1107510 AT5G58910.3 44.504 564 298 10 12 572 15 566 6.49e-168 489
Msa1107510 AT2G38080.1 44.268 567 291 12 14 572 9 558 8.21e-168 488
Msa1107510 AT5G58910.2 44.149 564 301 9 12 572 15 567 8.42e-168 489
Msa1107510 AT5G09360.1 42.933 566 301 10 12 572 21 569 1.16e-165 483
Msa1107510 AT1G18140.1 44.561 570 290 12 19 572 22 581 1.74e-164 481
Msa1107510 AT5G01190.1 44.425 574 297 8 1 572 5 558 4.86e-164 479
Msa1107510 AT5G58910.1 44.776 536 276 9 39 572 6 523 4.29e-162 473
Msa1107510 AT5G01190.2 45.558 529 271 7 46 572 31 544 4.94e-157 460
Msa1107510 AT2G46570.1 43.885 556 293 9 22 572 28 569 7.49e-156 458
Msa1107510 AT5G48100.1 43.292 559 293 13 14 562 9 553 9.52e-152 447
Msa1107510 AT5G60020.2 43.303 545 284 11 1 530 1 535 9.13e-151 444
Msa1107510 AT5G07130.2 44.668 497 250 12 88 572 1 484 1.09e-145 429
Msa1107510 AT5G07130.3 44.668 497 250 12 88 572 1 484 1.09e-145 429
Msa1107510 AT2G46570.2 43.636 495 260 9 83 572 4 484 7.47e-134 399
Msa1107510 AT5G21105.1 30.288 591 339 20 10 563 20 574 6.66e-65 223
Msa1107510 AT4G39830.1 28.856 603 338 20 13 572 23 577 7.18e-65 223
Msa1107510 AT5G21100.1 29.433 564 325 19 21 551 19 542 2.81e-63 218
Msa1107510 AT5G21105.3 29.910 555 319 19 10 530 20 538 1.29e-56 199
Msa1107510 AT4G39830.2 28.868 530 287 19 85 572 1 482 3.65e-49 177
Msa1107510 AT4G39830.3 28.872 523 282 19 92 572 6 480 1.42e-47 173
Msa1107510 AT4G39830.4 28.355 529 278 18 85 572 1 469 4.71e-46 169
Msa1107510 AT1G41830.1 28.437 531 321 18 16 537 16 496 8.27e-43 161
Msa1107510 AT1G76160.1 27.580 562 349 18 9 562 6 517 4.43e-42 159
Msa1107510 AT4G37160.1 27.555 548 348 15 28 572 33 534 2.81e-41 157
Msa1107510 AT5G66920.1 27.338 556 337 18 28 572 39 538 2.87e-40 154
Msa1107510 AT5G51480.1 27.652 575 360 18 14 572 16 550 1.01e-39 153
Msa1107510 AT5G48450.2 27.379 515 322 18 40 546 43 513 5.11e-39 151
Msa1107510 AT5G48450.1 27.379 515 322 18 40 546 43 513 9.44e-39 150
Msa1107510 AT1G21850.1 27.941 544 308 19 37 562 40 517 1.74e-38 149
Msa1107510 AT2G23630.2 27.057 547 349 17 29 572 38 537 2.39e-38 149
Msa1107510 AT1G21860.1 26.538 520 315 19 37 545 40 503 2.76e-38 148
Msa1107510 AT2G23630.1 27.057 547 349 17 29 572 33 532 2.92e-38 148
Msa1107510 AT4G12420.1 26.923 546 351 18 2 537 5 512 2.14e-37 146
Msa1107510 AT4G12420.2 26.923 546 351 18 2 537 5 512 2.14e-37 146
Msa1107510 AT4G25240.2 27.652 575 365 17 11 572 14 550 4.47e-37 145
Msa1107510 AT4G25240.1 27.652 575 365 17 11 572 14 550 4.47e-37 145
Msa1107510 AT1G75790.1 27.090 598 342 25 1 572 12 541 1.78e-36 143
Msa1107510 AT4G22010.1 26.557 546 333 16 40 572 40 530 3.11e-36 142
Msa1107510 AT1G55570.1 27.715 534 319 18 28 545 31 513 5.38e-34 136
Msa1107510 AT5G21105.2 30.769 364 212 12 209 563 51 383 7.64e-34 133
Msa1107510 AT4G37160.2 28.409 440 270 13 28 464 33 430 6.17e-33 131
Msa1107510 AT4G28090.1 24.765 533 335 17 18 537 20 499 2.06e-32 131
Msa1107510 AT3G13390.1 26.128 532 330 16 28 545 30 512 7.36e-32 130
Msa1107510 AT4G38420.1 25.301 498 325 15 44 536 48 503 7.10e-30 124
Msa1107510 AT1G55560.1 26.214 515 324 19 28 532 28 496 2.02e-28 119
Msa1107510 AT3G13400.2 26.953 512 324 18 28 532 29 497 2.42e-28 119
Msa1107510 AT3G13400.1 26.953 512 324 18 28 532 29 497 2.42e-28 119
Msa1107510 AT4G38420.3 24.895 478 312 15 44 516 48 483 3.70e-26 112
Msa1107510 AT4G38420.2 29.365 252 164 6 44 291 48 289 2.16e-24 106

Find 126 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTGTAGGGGTCCCTAAT+TGG 0.174590 7_3:+49243096 Msa1107510:CDS
TCACTTCAATATGAAGATTT+TGG 0.175375 7_3:+49240933 Msa1107510:exon
CAAGTGATTGTTACAGTTAA+TGG 0.188106 7_3:+49241650 Msa1107510:CDS
AGTGGGACAGGGACCCAATT+AGG 0.244182 7_3:-49243110 None:intergenic
TACCAATCACCTAGTATTAT+TGG 0.245668 7_3:-49242451 None:intergenic
TACAGTTGAACACACTTTCT+TGG 0.248421 7_3:+49241014 Msa1107510:CDS
TGATTTGCCTAAATGTTAAT+TGG 0.249889 7_3:+49243888 Msa1107510:exon
CGATAAACTCAAGTATAATT+TGG 0.260597 7_3:+49243562 Msa1107510:CDS
TATTGAAGTGACCAACTTAT+AGG 0.262580 7_3:-49240921 None:intergenic
GGTACTTCCTTGTAGGGTTT+TGG 0.263167 7_3:-49242430 None:intergenic
AAAGTTGTATATTGTAGATA+TGG 0.282207 7_3:-49244058 None:intergenic
CCTGTACACTTAGCATTTAC+AGG 0.283680 7_3:-49243185 None:intergenic
TATGTATATCACAATTAATA+TGG 0.286408 7_3:+49243148 Msa1107510:CDS
GGACATTGTGTTATATATTC+AGG 0.298929 7_3:-49242262 None:intergenic
TTCACTATCAACGGCTTTCC+TGG 0.299902 7_3:+49242541 Msa1107510:CDS
ACAGCATTCATAGTTGAAAA+TGG 0.311293 7_3:+49243829 Msa1107510:CDS
TATCTACAATATACAACTTT+TGG 0.314120 7_3:+49244061 Msa1107510:three_prime_UTR
TGCTTCACCTTAGTCGATTT+CGG 0.324244 7_3:-49243404 None:intergenic
CATATAGCCAATTAACATTT+AGG 0.326301 7_3:-49243895 None:intergenic
TATTATTGGTACTTCCTTGT+AGG 0.335846 7_3:-49242437 None:intergenic
GACGATTATATCGGTGGTAT+AGG 0.340782 7_3:-49242826 None:intergenic
TTGCTGTGCCGGTGGGAGGA+TGG 0.341412 7_3:+49243609 Msa1107510:CDS
CCAGTGAATTGTTATATTGT+AGG 0.350520 7_3:-49241744 None:intergenic
CAAATTATACTTGAGTTTAT+CGG 0.350950 7_3:-49243561 None:intergenic
CTGTAACAATCACTTGTTCA+TGG 0.365502 7_3:-49241643 None:intergenic
TGCTGTGCCGGTGGGAGGAT+GGG 0.368851 7_3:+49243610 Msa1107510:CDS
CCATCCCTGACTTCCAGCTT+TGG 0.378346 7_3:-49241686 None:intergenic
TTCGGTGTAAATGTAACATT+AGG 0.379226 7_3:-49243386 None:intergenic
ATGTGGATGATCATAATCTA+TGG 0.380123 7_3:+49243797 Msa1107510:CDS
TCTTGTAGGGGTCCCTAATT+GGG 0.394079 7_3:+49243097 Msa1107510:CDS
ATTATTGGTACTTCCTTGTA+GGG 0.396984 7_3:-49242436 None:intergenic
CAGGTCCAAAGCTGGAAGTC+AGG 0.405362 7_3:+49241681 Msa1107510:CDS
TTCTTATTTGTCCTATAAGT+TGG 0.410111 7_3:+49240910 Msa1107510:five_prime_UTR
GTGGGACAGGGACCCAATTA+GGG 0.415099 7_3:-49243109 None:intergenic
TCGCAACACGGTTGCTGTGC+CGG 0.420527 7_3:+49243598 Msa1107510:CDS
CTGACTTCCAGCTTTGGACC+TGG 0.430307 7_3:-49241680 None:intergenic
GTTGTACGTGCAACAGTTCA+TGG 0.431433 7_3:+49242367 Msa1107510:CDS
CACAACAAGAAGGAACATTA+TGG 0.433064 7_3:+49242326 Msa1107510:CDS
GATATAATCGTCATCGCAGC+AGG 0.436995 7_3:+49242837 Msa1107510:CDS
GCAACATAACTGGTCTTGTA+GGG 0.443607 7_3:+49243084 Msa1107510:CDS
ACGATTATATCGGTGGTATA+GGG 0.445298 7_3:-49242825 None:intergenic
CAGTGAATTGTTATATTGTA+GGG 0.446742 7_3:-49241743 None:intergenic
ATGTATATCACAATTAATAT+GGG 0.450105 7_3:+49243149 Msa1107510:CDS
AGTCATCCCATGCATCTTCA+TGG 0.453679 7_3:+49243488 Msa1107510:CDS
AGAACGAGGTTGAATGATAA+TGG 0.461232 7_3:-49242392 None:intergenic
ATACTAGGTGATTGGTATGA+TGG 0.461264 7_3:+49242457 Msa1107510:CDS
GCCATGTAGTATGAACCTTT+TGG 0.463483 7_3:-49242894 None:intergenic
GCAACCGTGTTGCGAATTGA+AGG 0.469608 7_3:-49243590 None:intergenic
TACTTGAGTTTATCGGTAGT+AGG 0.471637 7_3:-49243554 None:intergenic
TACCAATAATACTAGGTGAT+TGG 0.472302 7_3:+49242449 Msa1107510:CDS
GCTGCATCACCTTATGTTGT+TGG 0.473113 7_3:+49242915 Msa1107510:CDS
CTGCCCATGCACTATATAGC+TGG 0.475656 7_3:-49242234 None:intergenic
CCAACACCTTCAACTTCACT+TGG 0.476302 7_3:+49243853 Msa1107510:CDS
GTTGACCATTCGGAACAAAT+AGG 0.478262 7_3:-49242721 None:intergenic
ACATACCAGGATTGTCAGTT+CGG 0.478393 7_3:-49243646 None:intergenic
TCCATTTCCAAAACCCTACA+AGG 0.483423 7_3:+49242423 Msa1107510:CDS
TGACTTCCAGCTTTGGACCT+GGG 0.483976 7_3:-49241679 None:intergenic
ATTATCATTCAACCTCGTTC+TGG 0.487753 7_3:+49242394 Msa1107510:CDS
TGGAAAAGGATATTCCATAA+TGG 0.491498 7_3:+49243265 Msa1107510:CDS
ATTTACACCGAAATCGACTA+AGG 0.491745 7_3:+49243397 Msa1107510:CDS
CCTGTAAATGCTAAGTGTAC+AGG 0.492619 7_3:+49243185 Msa1107510:CDS
TTCGGTGTATGCGGCATCCA+TGG 0.503408 7_3:-49242802 None:intergenic
AGCAACATAACTGGTCTTGT+AGG 0.504803 7_3:+49243083 Msa1107510:CDS
CACTTAGCATTTACAGGACA+AGG 0.505158 7_3:-49243179 None:intergenic
AAGTTGTATATTGTAGATAT+GGG 0.508659 7_3:-49244057 None:intergenic
TGAAAAGTATATCAGCGCTT+TGG 0.511942 7_3:-49242860 None:intergenic
ACTGGTTCACCAACAACATA+AGG 0.513560 7_3:-49242924 None:intergenic
TCATCCACTTCAAGTGGGAC+AGG 0.515815 7_3:-49243122 None:intergenic
TGTGGATGATCATAATCTAT+GGG 0.516377 7_3:+49243798 Msa1107510:CDS
AAAGACGACAGCACGAGTTG+TGG 0.517938 7_3:-49242964 None:intergenic
GAACAATTGAAGAGATCGCC+AGG 0.518140 7_3:-49242559 None:intergenic
TTCACAGCAGACCAACCAAA+AGG 0.519262 7_3:+49242879 Msa1107510:CDS
CAACACGGTTGCTGTGCCGG+TGG 0.525329 7_3:+49243601 Msa1107510:CDS
CTATATAGTGCATGGGCAGA+TGG 0.526400 7_3:+49242238 Msa1107510:CDS
ACTTTACCCAGGTCCAAAGC+TGG 0.536979 7_3:+49241673 Msa1107510:CDS
TTCATACCATGAAGATGCAT+GGG 0.538306 7_3:-49243494 None:intergenic
ATTCATACCATGAAGATGCA+TGG 0.538422 7_3:-49243495 None:intergenic
AGTGGTAATGCTGGCATCAA+AGG 0.541191 7_3:-49243026 None:intergenic
TATATCGGTGGTATAGGGTT+CGG 0.546559 7_3:-49242820 None:intergenic
CAAATACAATTCAACGGTGG+AGG 0.551874 7_3:+49243430 Msa1107510:CDS
TGTTCCAGCTATATAGTGCA+TGG 0.553352 7_3:+49242230 Msa1107510:CDS
TAACATTTAGGCAAATCAGC+AGG 0.558427 7_3:-49243883 None:intergenic
GAATTGTCGAAGAGTCCTAC+TGG 0.559246 7_3:-49242942 None:intergenic
AGATTCCGAACTGACAATCC+TGG 0.559455 7_3:+49243641 Msa1107510:CDS
TTAGGCAAATCAGCAGGTGG+TGG 0.560545 7_3:-49243877 None:intergenic
CAAATTCACAGTGGTAGCCA+TGG 0.562677 7_3:+49242785 Msa1107510:CDS
GGTCCCTGTCCCACTTGAAG+TGG 0.563821 7_3:+49243118 Msa1107510:CDS
TGCTGCGATGACGATTATAT+CGG 0.564209 7_3:-49242835 None:intergenic
AGGTCCAAAGCTGGAAGTCA+GGG 0.569821 7_3:+49241682 Msa1107510:CDS
TTGTTATGAAGTGGTAATGC+TGG 0.573382 7_3:-49243035 None:intergenic
AACACGGTTGCTGTGCCGGT+GGG 0.573459 7_3:+49243602 Msa1107510:CDS
CCTACAATATAACAATTCAC+TGG 0.574181 7_3:+49241744 Msa1107510:CDS
AAAGACCTATTTGTTCCGAA+TGG 0.575759 7_3:+49242716 Msa1107510:CDS
AAGGAAGTACCAATAATACT+AGG 0.578287 7_3:+49242442 Msa1107510:CDS
TCTGATGCTTTCACTATCAA+CGG 0.586303 7_3:+49242532 Msa1107510:CDS
ACCAAAAGGTTCATACTACA+TGG 0.591334 7_3:+49242893 Msa1107510:CDS
GCTAAGTGTACAGGTCCACT+TGG 0.593627 7_3:+49243194 Msa1107510:CDS
ACGGTTGCTGTGCCGGTGGG+AGG 0.595198 7_3:+49243605 Msa1107510:CDS
TTTGGTATTATGGCAAACAT+GGG 0.595607 7_3:+49240951 Msa1107510:CDS
TTTAATGTGACACAACAAGA+AGG 0.597981 7_3:+49242316 Msa1107510:CDS
GAATCCTTCAATTCGCAACA+CGG 0.600436 7_3:+49243586 Msa1107510:CDS
ATAGCAGCCCATCCTCCCAC+CGG 0.601570 7_3:-49243617 None:intergenic
CATCCACTTCAAGTGGGACA+GGG 0.612302 7_3:-49243121 None:intergenic
GCAATTCAAATACAATTCAA+CGG 0.613563 7_3:+49243424 Msa1107510:CDS
CCAAGTGAAGTTGAAGGTGT+TGG 0.618280 7_3:-49243853 None:intergenic
GTTCCAGCTATATAGTGCAT+GGG 0.620582 7_3:+49242231 Msa1107510:CDS
TATGTTGTTGGTGAACCAGT+AGG 0.621180 7_3:+49242927 Msa1107510:CDS
ATATGTTCATCCACTTCAAG+TGG 0.622032 7_3:-49243128 None:intergenic
ACAGTTAATGGACTTTACCC+AGG 0.628423 7_3:+49241662 Msa1107510:CDS
ATTGGTGTATTGTTATGAAG+TGG 0.638592 7_3:-49243044 None:intergenic
TATAAGCTGAAAGTGAAGCA+AGG 0.638942 7_3:+49242693 Msa1107510:CDS
TGCGATGACGATTATATCGG+TGG 0.644549 7_3:-49242832 None:intergenic
TTGATAGTGAAAGCATCAGA+TGG 0.646028 7_3:-49242529 None:intergenic
TACCACTGTGAATTTGTGAT+CGG 0.646281 7_3:-49242778 None:intergenic
CCAAAGCTGGAAGTCAGGGA+TGG 0.647318 7_3:+49241686 Msa1107510:CDS
GGTGGACCAAGTGAAGTTGA+AGG 0.647739 7_3:-49243859 None:intergenic
CATTTAGGCAAATCAGCAGG+TGG 0.649176 7_3:-49243880 None:intergenic
GGTATAGGGTTCGGTGTATG+CGG 0.655841 7_3:-49242811 None:intergenic
CAACATAACTGGTCTTGTAG+GGG 0.668186 7_3:+49243085 Msa1107510:CDS
TATGTTCATCCACTTCAAGT+GGG 0.681147 7_3:-49243127 None:intergenic
TTGGTATGATGGAAATGTTG+AGG 0.683745 7_3:+49242468 Msa1107510:CDS
GTGGATGATCATAATCTATG+GGG 0.686953 7_3:+49243799 Msa1107510:CDS
AACAAGAAGGAACATTATGG+TGG 0.690252 7_3:+49242329 Msa1107510:CDS
AATGGAAATCGACCAGAACG+AGG 0.698932 7_3:-49242406 None:intergenic
ATTCAAATACAATTCAACGG+TGG 0.707341 7_3:+49243427 Msa1107510:CDS
TGCCGATCACAAATTCACAG+TGG 0.784044 7_3:+49242776 Msa1107510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAATTTTATCTTCATTTA+TGG + chr7_3:49240981-49241000 Msa1107510:CDS 15.0%
!!! TTGTATGTAAATTTATTTTC+AGG - chr7_3:49242295-49242314 None:intergenic 15.0%
!! TATGTATATCACAATTAATA+TGG + chr7_3:49243148-49243167 Msa1107510:CDS 15.0%
!! ATGTATATCACAATTAATAT+GGG + chr7_3:49243149-49243168 Msa1107510:CDS 15.0%
!!! AATTTCTTGATTGTTTATTT+TGG + chr7_3:49243750-49243769 Msa1107510:intron 15.0%
!!! ATATGAAGATTTTGGTATTA+TGG + chr7_3:49240941-49240960 Msa1107510:exon 20.0%
!! TGATTGCAATTAGTTATATT+GGG - chr7_3:49241138-49241157 None:intergenic 20.0%
!! ATGATTGCAATTAGTTATAT+TGG - chr7_3:49241139-49241158 None:intergenic 20.0%
!! TTATAAATCTCACTTTCTTA+TGG - chr7_3:49241207-49241226 None:intergenic 20.0%
!!! GATAATCCTTTTAGAATAAT+CGG - chr7_3:49241333-49241352 None:intergenic 20.0%
!! ATTATCAAAAGTCTATAGAA+AGG + chr7_3:49241347-49241366 Msa1107510:intron 20.0%
!!! GATTTCACTATATTTTCTTT+TGG + chr7_3:49241491-49241510 Msa1107510:intron 20.0%
!!! TTTTTTTTTCCTTCCAAATT+TGG + chr7_3:49241827-49241846 Msa1107510:intron 20.0%
!!! TGAATTTTTGAACTATGTAA+AGG + chr7_3:49242200-49242219 Msa1107510:intron 20.0%
!! AATTTACACAAAATTAGAGA+AGG - chr7_3:49242610-49242629 None:intergenic 20.0%
!!! AAATTTTTTAGCAACATAAC+TGG + chr7_3:49243074-49243093 Msa1107510:CDS 20.0%
!!! TTAGGATCCAAAAATATTTT+CGG - chr7_3:49243371-49243390 None:intergenic 20.0%
!! CAAATTATACTTGAGTTTAT+CGG - chr7_3:49243564-49243583 None:intergenic 20.0%
!! AAGTTGTATATTGTAGATAT+GGG - chr7_3:49244060-49244079 None:intergenic 20.0%
!! AAAGTTGTATATTGTAGATA+TGG - chr7_3:49244061-49244080 None:intergenic 20.0%
!!! TATCTACAATATACAACTTT+TGG + chr7_3:49244061-49244080 Msa1107510:three_prime_UTR 20.0%
!! TTCTTATTTGTCCTATAAGT+TGG + chr7_3:49240910-49240929 Msa1107510:five_prime_UTR 25.0%
!! TCACTTCAATATGAAGATTT+TGG + chr7_3:49240933-49240952 Msa1107510:exon 25.0%
!! CTATGACATAAATTTTTGCA+AGG + chr7_3:49241176-49241195 Msa1107510:intron 25.0%
! TAATCTCCGATTATTCTAAA+AGG + chr7_3:49241324-49241343 Msa1107510:intron 25.0%
!!! TTGGCTTCTAATGTTTTTTT+TGG + chr7_3:49241528-49241547 Msa1107510:intron 25.0%
! CAGTGAATTGTTATATTGTA+GGG - chr7_3:49241746-49241765 None:intergenic 25.0%
! AAGGAAAAAAAAATGCTGAA+AGG - chr7_3:49241820-49241839 None:intergenic 25.0%
!!! GGAGACTTTATCTTTTTTTT+TGG + chr7_3:49241901-49241920 Msa1107510:intron 25.0%
! TTATATATGAGTTCTTTCTC+TGG - chr7_3:49242115-49242134 None:intergenic 25.0%
!!! AATTTATTTTCAGGACGAAT+TGG - chr7_3:49242286-49242305 None:intergenic 25.0%
! CTAAAAAATTTGTGAGCTAT+TGG - chr7_3:49243065-49243084 None:intergenic 25.0%
! GTAAAAATATGCTTCCATTA+TGG - chr7_3:49243282-49243301 None:intergenic 25.0%
!! TTTACGAAGTCGAAAAATTT+TGG - chr7_3:49243347-49243366 None:intergenic 25.0%
!! TAGGATCCAAAAATATTTTC+GGG - chr7_3:49243370-49243389 None:intergenic 25.0%
! GCAATTCAAATACAATTCAA+CGG + chr7_3:49243424-49243443 Msa1107510:CDS 25.0%
!! TGGTATGAATTTTCATGTTT+TGG + chr7_3:49243508-49243527 Msa1107510:CDS 25.0%
! CGATAAACTCAAGTATAATT+TGG + chr7_3:49243562-49243581 Msa1107510:CDS 25.0%
! ATAAAATACTTGTACATACC+AGG - chr7_3:49243662-49243681 None:intergenic 25.0%
!! TGATTTGCCTAAATGTTAAT+TGG + chr7_3:49243888-49243907 Msa1107510:exon 25.0%
! CATATAGCCAATTAACATTT+AGG - chr7_3:49243898-49243917 None:intergenic 25.0%
! TCAAAAGAAAAATGTGAAAG+AGG - chr7_3:49243959-49243978 None:intergenic 25.0%
!! CAAGCAATAAGTACAATTTT+TGG + chr7_3:49244010-49244029 Msa1107510:three_prime_UTR 25.0%
TATTGAAGTGACCAACTTAT+AGG - chr7_3:49240924-49240943 None:intergenic 30.0%
! TTTTGGTATTATGGCAAACA+TGG + chr7_3:49240950-49240969 Msa1107510:CDS 30.0%
TTTGGTATTATGGCAAACAT+GGG + chr7_3:49240951-49240970 Msa1107510:CDS 30.0%
CTAATTGCAATCATTTCTCA+CGG + chr7_3:49241145-49241164 Msa1107510:intron 30.0%
! GACATAAATTTTTGCAAGGT+CGG + chr7_3:49241180-49241199 Msa1107510:intron 30.0%
AACCATGATCATTTACAACT+TGG - chr7_3:49241304-49241323 None:intergenic 30.0%
! TTCTCTTTATCTTTTTGCGA+AGG + chr7_3:49241395-49241414 Msa1107510:intron 30.0%
! CATTAGAAGCCAATTTTACT+TGG - chr7_3:49241521-49241540 None:intergenic 30.0%
CAAGTGATTGTTACAGTTAA+TGG + chr7_3:49241650-49241669 Msa1107510:CDS 30.0%
CCAGTGAATTGTTATATTGT+AGG - chr7_3:49241747-49241766 None:intergenic 30.0%
CCTACAATATAACAATTCAC+TGG + chr7_3:49241744-49241763 Msa1107510:CDS 30.0%
!!! TTTTGGCTCAAATAACATAG+TGG + chr7_3:49241918-49241937 Msa1107510:intron 30.0%
! TTTTGAACTATGTAAAGGCA+TGG + chr7_3:49242205-49242224 Msa1107510:intron 30.0%
GGACATTGTGTTATATATTC+AGG - chr7_3:49242265-49242284 None:intergenic 30.0%
TTTAATGTGACACAACAAGA+AGG + chr7_3:49242316-49242335 Msa1107510:CDS 30.0%
ATTATTGGTACTTCCTTGTA+GGG - chr7_3:49242439-49242458 None:intergenic 30.0%
TATTATTGGTACTTCCTTGT+AGG - chr7_3:49242440-49242459 None:intergenic 30.0%
!! AAGGAAGTACCAATAATACT+AGG + chr7_3:49242442-49242461 Msa1107510:CDS 30.0%
TACCAATAATACTAGGTGAT+TGG + chr7_3:49242449-49242468 Msa1107510:CDS 30.0%
TACCAATCACCTAGTATTAT+TGG - chr7_3:49242454-49242473 None:intergenic 30.0%
ATTGGTGTATTGTTATGAAG+TGG - chr7_3:49243047-49243066 None:intergenic 30.0%
TGGAAAAGGATATTCCATAA+TGG + chr7_3:49243265-49243284 Msa1107510:CDS 30.0%
!! GCATATTTTTACAATGTGAG+TGG + chr7_3:49243290-49243309 Msa1107510:CDS 30.0%
!! AAAAATTTTGGAGGGTTATC+TGG - chr7_3:49243335-49243354 None:intergenic 30.0%
! CGTAAACCCGAAAATATTTT+TGG + chr7_3:49243361-49243380 Msa1107510:CDS 30.0%
! TTCGGTGTAAATGTAACATT+AGG - chr7_3:49243389-49243408 None:intergenic 30.0%
ATTCAAATACAATTCAACGG+TGG + chr7_3:49243427-49243446 Msa1107510:CDS 30.0%
!!! TCTTGATTGTTTATTTTGGC+AGG + chr7_3:49243754-49243773 Msa1107510:intron 30.0%
!!! CTTGATTGTTTATTTTGGCA+GGG + chr7_3:49243755-49243774 Msa1107510:intron 30.0%
!!! TTGATTGTTTATTTTGGCAG+GGG + chr7_3:49243756-49243775 Msa1107510:intron 30.0%
ATGTGGATGATCATAATCTA+TGG + chr7_3:49243797-49243816 Msa1107510:CDS 30.0%
TGTGGATGATCATAATCTAT+GGG + chr7_3:49243798-49243817 Msa1107510:CDS 30.0%
ACAGCATTCATAGTTGAAAA+TGG + chr7_3:49243829-49243848 Msa1107510:CDS 30.0%
! ATATACAACTTTTGGTCATG+TGG + chr7_3:49244069-49244088 Msa1107510:three_prime_UTR 30.0%
TACAGTTGAACACACTTTCT+TGG + chr7_3:49241014-49241033 Msa1107510:CDS 35.0%
GTTATATTGGGTAAGCTAAG+TGG - chr7_3:49241126-49241145 None:intergenic 35.0%
GTCCAAGTTGTAAATGATCA+TGG + chr7_3:49241299-49241318 Msa1107510:intron 35.0%
! TCTTTATCTTTTTGCGAAGG+TGG + chr7_3:49241398-49241417 Msa1107510:intron 35.0%
! CTTTATCTTTTTGCGAAGGT+GGG + chr7_3:49241399-49241418 Msa1107510:intron 35.0%
!!! CAACTTTTGATAGTGAGTTC+CGG - chr7_3:49241434-49241453 None:intergenic 35.0%
TATAGTGAAATCCACGTGTT+AGG - chr7_3:49241483-49241502 None:intergenic 35.0%
TTTGGACAGCCAAGTAAAAT+TGG + chr7_3:49241509-49241528 Msa1107510:intron 35.0%
GTTGAAATTGAATGAGTTGC+AGG + chr7_3:49241592-49241611 Msa1107510:intron 35.0%
CTGTAACAATCACTTGTTCA+TGG - chr7_3:49241646-49241665 None:intergenic 35.0%
AAAGATAAAGTCTCCTCTCA+TGG - chr7_3:49241896-49241915 None:intergenic 35.0%
!! TCACTTTTGCGATGAATAAG+TGG + chr7_3:49241949-49241968 Msa1107510:intron 35.0%
! GTTCTTTCTCTGGATTTTGA+TGG - chr7_3:49242105-49242124 None:intergenic 35.0%
CACAACAAGAAGGAACATTA+TGG + chr7_3:49242326-49242345 Msa1107510:CDS 35.0%
AACAAGAAGGAACATTATGG+TGG + chr7_3:49242329-49242348 Msa1107510:CDS 35.0%
AGAACGAGGTTGAATGATAA+TGG - chr7_3:49242395-49242414 None:intergenic 35.0%
ATTATCATTCAACCTCGTTC+TGG + chr7_3:49242394-49242413 Msa1107510:CDS 35.0%
ATACTAGGTGATTGGTATGA+TGG + chr7_3:49242457-49242476 Msa1107510:CDS 35.0%
! TTGGTATGATGGAAATGTTG+AGG + chr7_3:49242468-49242487 Msa1107510:CDS 35.0%
ATCCAAAAAGAACTCGAAAC+AGG + chr7_3:49242496-49242515 Msa1107510:CDS 35.0%
!! TTGATAGTGAAAGCATCAGA+TGG - chr7_3:49242532-49242551 None:intergenic 35.0%
TCTGATGCTTTCACTATCAA+CGG + chr7_3:49242532-49242551 Msa1107510:CDS 35.0%
TATAAGCTGAAAGTGAAGCA+AGG + chr7_3:49242693-49242712 Msa1107510:CDS 35.0%
AAAGACCTATTTGTTCCGAA+TGG + chr7_3:49242716-49242735 Msa1107510:CDS 35.0%
TACCACTGTGAATTTGTGAT+CGG - chr7_3:49242781-49242800 None:intergenic 35.0%
ACGATTATATCGGTGGTATA+GGG - chr7_3:49242828-49242847 None:intergenic 35.0%
! TGAAAAGTATATCAGCGCTT+TGG - chr7_3:49242863-49242882 None:intergenic 35.0%
! TGTAGTATGAACCTTTTGGT+TGG - chr7_3:49242893-49242912 None:intergenic 35.0%
ACCAAAAGGTTCATACTACA+TGG + chr7_3:49242893-49242912 Msa1107510:CDS 35.0%
! TTGTTATGAAGTGGTAATGC+TGG - chr7_3:49243038-49243057 None:intergenic 35.0%
TATGTTCATCCACTTCAAGT+GGG - chr7_3:49243130-49243149 None:intergenic 35.0%
ATATGTTCATCCACTTCAAG+TGG - chr7_3:49243131-49243150 None:intergenic 35.0%
! GATGCAAATTTTTGTCCAAG+TGG - chr7_3:49243212-49243231 None:intergenic 35.0%
! TTTTTGCTTCCTGTTGGAAA+AGG + chr7_3:49243251-49243270 Msa1107510:CDS 35.0%
! ATGGAATATCCTTTTCCAAC+AGG - chr7_3:49243263-49243282 None:intergenic 35.0%
! CGAAGTCGAAAAATTTTGGA+GGG - chr7_3:49243343-49243362 None:intergenic 35.0%
! ACGAAGTCGAAAAATTTTGG+AGG - chr7_3:49243344-49243363 None:intergenic 35.0%
ATTTACACCGAAATCGACTA+AGG + chr7_3:49243397-49243416 Msa1107510:CDS 35.0%
TTCATACCATGAAGATGCAT+GGG - chr7_3:49243497-49243516 None:intergenic 35.0%
ATTCATACCATGAAGATGCA+TGG - chr7_3:49243498-49243517 None:intergenic 35.0%
TACTTGAGTTTATCGGTAGT+AGG - chr7_3:49243557-49243576 None:intergenic 35.0%
! ATGGTTTTTGCATTGTCATG+TGG + chr7_3:49243780-49243799 Msa1107510:CDS 35.0%
GTGGATGATCATAATCTATG+GGG + chr7_3:49243799-49243818 Msa1107510:CDS 35.0%
TAACATTTAGGCAAATCAGC+AGG - chr7_3:49243886-49243905 None:intergenic 35.0%
!!! AAGTACAATTTTTGGTCACG+TGG + chr7_3:49244018-49244037 Msa1107510:three_prime_UTR 35.0%
!! ACAGTTAATGGACTTTACCC+AGG + chr7_3:49241662-49241681 Msa1107510:CDS 40.0%
TGTGACGAACCAAATTTGGA+AGG - chr7_3:49241839-49241858 None:intergenic 40.0%
CGATTGTGACGAACCAAATT+TGG - chr7_3:49241843-49241862 None:intergenic 40.0%
CTACATGTTTGATCCATGAG+AGG + chr7_3:49241880-49241899 Msa1107510:intron 40.0%
GCTCAAATAACATAGTGGCT+AGG + chr7_3:49241923-49241942 Msa1107510:intron 40.0%
TTTGTCTCGTGAAGCTTAGT+TGG - chr7_3:49242023-49242042 None:intergenic 40.0%
!! CTTTCTCTGGATTTTGATGG+TGG - chr7_3:49242102-49242121 None:intergenic 40.0%
TGTTCCAGCTATATAGTGCA+TGG + chr7_3:49242230-49242249 Msa1107510:CDS 40.0%
GTTCCAGCTATATAGTGCAT+GGG + chr7_3:49242231-49242250 Msa1107510:CDS 40.0%
TCCATTTCCAAAACCCTACA+AGG + chr7_3:49242423-49242442 Msa1107510:CDS 40.0%
!!! TCCTTGTAGGGTTTTGGAAA+TGG - chr7_3:49242427-49242446 None:intergenic 40.0%
!!! CACCTGTTTCGAGTTCTTTT+TGG - chr7_3:49242501-49242520 None:intergenic 40.0%
GTTGACCATTCGGAACAAAT+AGG - chr7_3:49242724-49242743 None:intergenic 40.0%
TATATCGGTGGTATAGGGTT+CGG - chr7_3:49242823-49242842 None:intergenic 40.0%
GACGATTATATCGGTGGTAT+AGG - chr7_3:49242829-49242848 None:intergenic 40.0%
TGCTGCGATGACGATTATAT+CGG - chr7_3:49242838-49242857 None:intergenic 40.0%
! GCCATGTAGTATGAACCTTT+TGG - chr7_3:49242897-49242916 None:intergenic 40.0%
! ACTGGTTCACCAACAACATA+AGG - chr7_3:49242927-49242946 None:intergenic 40.0%
! TATGTTGTTGGTGAACCAGT+AGG + chr7_3:49242927-49242946 Msa1107510:CDS 40.0%
!! AGCAACATAACTGGTCTTGT+AGG + chr7_3:49243083-49243102 Msa1107510:CDS 40.0%
!! GCAACATAACTGGTCTTGTA+GGG + chr7_3:49243084-49243103 Msa1107510:CDS 40.0%
!! CAACATAACTGGTCTTGTAG+GGG + chr7_3:49243085-49243104 Msa1107510:CDS 40.0%
CACTTAGCATTTACAGGACA+AGG - chr7_3:49243182-49243201 None:intergenic 40.0%
CCTGTACACTTAGCATTTAC+AGG - chr7_3:49243188-49243207 None:intergenic 40.0%
CCTGTAAATGCTAAGTGTAC+AGG + chr7_3:49243185-49243204 Msa1107510:CDS 40.0%
!!! GAGTCATTTTTGCTTCCTGT+TGG + chr7_3:49243245-49243264 Msa1107510:CDS 40.0%
! TGCTTCACCTTAGTCGATTT+CGG - chr7_3:49243407-49243426 None:intergenic 40.0%
CAAATACAATTCAACGGTGG+AGG + chr7_3:49243430-49243449 Msa1107510:CDS 40.0%
!!! CATGTTTTGGCTCAAGACTT+CGG + chr7_3:49243521-49243540 Msa1107510:CDS 40.0%
!!! ATGTTTTGGCTCAAGACTTC+GGG + chr7_3:49243522-49243541 Msa1107510:CDS 40.0%
GAATCCTTCAATTCGCAACA+CGG + chr7_3:49243586-49243605 Msa1107510:CDS 40.0%
ACATACCAGGATTGTCAGTT+CGG - chr7_3:49243649-49243668 None:intergenic 40.0%
!!! TGTTTATTTTGGCAGGGGTA+TGG + chr7_3:49243761-49243780 Msa1107510:intron 40.0%
!!! ACAATTTTTGGTCACGTGGT+AGG + chr7_3:49244022-49244041 Msa1107510:three_prime_UTR 40.0%
TGAAATCCACGTGTTAGGTC+GGG - chr7_3:49241478-49241497 None:intergenic 45.0%
GTGAAATCCACGTGTTAGGT+CGG - chr7_3:49241479-49241498 None:intergenic 45.0%
TCAGATTAGTGCAGGAGTCA+GGG - chr7_3:49241992-49242011 None:intergenic 45.0%
ATCAGATTAGTGCAGGAGTC+AGG - chr7_3:49241993-49242012 None:intergenic 45.0%
TAGGGACATCAGATTAGTGC+AGG - chr7_3:49242000-49242019 None:intergenic 45.0%
! CTCGTGAAGCTTAGTTGGTA+GGG - chr7_3:49242018-49242037 None:intergenic 45.0%
TCTCGTGAAGCTTAGTTGGT+AGG - chr7_3:49242019-49242038 None:intergenic 45.0%
CTATATAGTGCATGGGCAGA+TGG + chr7_3:49242238-49242257 Msa1107510:CDS 45.0%
GTTGTACGTGCAACAGTTCA+TGG + chr7_3:49242367-49242386 Msa1107510:CDS 45.0%
AATGGAAATCGACCAGAACG+AGG - chr7_3:49242409-49242428 None:intergenic 45.0%
! GGTACTTCCTTGTAGGGTTT+TGG - chr7_3:49242433-49242452 None:intergenic 45.0%
TTCACTATCAACGGCTTTCC+TGG + chr7_3:49242541-49242560 Msa1107510:CDS 45.0%
GAACAATTGAAGAGATCGCC+AGG - chr7_3:49242562-49242581 None:intergenic 45.0%
TGCCGATCACAAATTCACAG+TGG + chr7_3:49242776-49242795 Msa1107510:CDS 45.0%
CAAATTCACAGTGGTAGCCA+TGG + chr7_3:49242785-49242804 Msa1107510:CDS 45.0%
TGCGATGACGATTATATCGG+TGG - chr7_3:49242835-49242854 None:intergenic 45.0%
GATATAATCGTCATCGCAGC+AGG + chr7_3:49242837-49242856 Msa1107510:CDS 45.0%
TTCACAGCAGACCAACCAAA+AGG + chr7_3:49242879-49242898 Msa1107510:CDS 45.0%
GCTGCATCACCTTATGTTGT+TGG + chr7_3:49242915-49242934 Msa1107510:CDS 45.0%
GAATTGTCGAAGAGTCCTAC+TGG - chr7_3:49242945-49242964 None:intergenic 45.0%
! AGTGGTAATGCTGGCATCAA+AGG - chr7_3:49243029-49243048 None:intergenic 45.0%
TCTTGTAGGGGTCCCTAATT+GGG + chr7_3:49243097-49243116 Msa1107510:CDS 45.0%
AGTCATCCCATGCATCTTCA+TGG + chr7_3:49243488-49243507 Msa1107510:CDS 45.0%
AGATTCCGAACTGACAATCC+TGG + chr7_3:49243641-49243660 Msa1107510:CDS 45.0%
! CCAAGTGAAGTTGAAGGTGT+TGG - chr7_3:49243856-49243875 None:intergenic 45.0%
CCAACACCTTCAACTTCACT+TGG + chr7_3:49243853-49243872 Msa1107510:CDS 45.0%
CATTTAGGCAAATCAGCAGG+TGG - chr7_3:49243883-49243902 None:intergenic 45.0%
!!! CTTTTTGCGAAGGTGGGTTG+AGG + chr7_3:49241405-49241424 Msa1107510:intron 50.0%
ACGTGTTAGGTCGGGGAAAT+TGG - chr7_3:49241470-49241489 None:intergenic 50.0%
AATTTCCCCGACCTAACACG+TGG + chr7_3:49241469-49241488 Msa1107510:intron 50.0%
GAAATCCACGTGTTAGGTCG+GGG - chr7_3:49241477-49241496 None:intergenic 50.0%
ACTTTACCCAGGTCCAAAGC+TGG + chr7_3:49241673-49241692 Msa1107510:CDS 50.0%
!! TGACTTCCAGCTTTGGACCT+GGG - chr7_3:49241682-49241701 None:intergenic 50.0%
AGGTCCAAAGCTGGAAGTCA+GGG + chr7_3:49241682-49241701 Msa1107510:CDS 50.0%
CTGCCCATGCACTATATAGC+TGG - chr7_3:49242237-49242256 None:intergenic 50.0%
!! GGTATAGGGTTCGGTGTATG+CGG - chr7_3:49242814-49242833 None:intergenic 50.0%
AAAGACGACAGCACGAGTTG+TGG - chr7_3:49242967-49242986 None:intergenic 50.0%
! TCGTGCTGTCGTCTTTTACG+AGG + chr7_3:49242971-49242990 Msa1107510:CDS 50.0%
! CGTGCTGTCGTCTTTTACGA+GGG + chr7_3:49242972-49242991 Msa1107510:CDS 50.0%
GTCTTGTAGGGGTCCCTAAT+TGG + chr7_3:49243096-49243115 Msa1107510:CDS 50.0%
CATCCACTTCAAGTGGGACA+GGG - chr7_3:49243124-49243143 None:intergenic 50.0%
TCATCCACTTCAAGTGGGAC+AGG - chr7_3:49243125-49243144 None:intergenic 50.0%
GCTAAGTGTACAGGTCCACT+TGG + chr7_3:49243194-49243213 Msa1107510:CDS 50.0%
GCAACCGTGTTGCGAATTGA+AGG - chr7_3:49243593-49243612 None:intergenic 50.0%
GGTGGACCAAGTGAAGTTGA+AGG - chr7_3:49243862-49243881 None:intergenic 50.0%
TTAGGCAAATCAGCAGGTGG+TGG - chr7_3:49243880-49243899 None:intergenic 50.0%
!! CGAAGGTGGGTTGAGGAAAC+CGG + chr7_3:49241412-49241431 Msa1107510:intron 55.0%
!! CTGACTTCCAGCTTTGGACC+TGG - chr7_3:49241683-49241702 None:intergenic 55.0%
CAGGTCCAAAGCTGGAAGTC+AGG + chr7_3:49241681-49241700 Msa1107510:CDS 55.0%
CCATCCCTGACTTCCAGCTT+TGG - chr7_3:49241689-49241708 None:intergenic 55.0%
CCAAAGCTGGAAGTCAGGGA+TGG + chr7_3:49241686-49241705 Msa1107510:CDS 55.0%
!! CGAGTGCAGCGTTGACCATT+CGG - chr7_3:49242734-49242753 None:intergenic 55.0%
! TTCGGTGTATGCGGCATCCA+TGG - chr7_3:49242805-49242824 None:intergenic 55.0%
GTGGGACAGGGACCCAATTA+GGG - chr7_3:49243112-49243131 None:intergenic 55.0%
AGTGGGACAGGGACCCAATT+AGG - chr7_3:49243113-49243132 None:intergenic 55.0%
GGTCCCTGTCCCACTTGAAG+TGG + chr7_3:49243118-49243137 Msa1107510:CDS 60.0%
TCGCAACACGGTTGCTGTGC+CGG + chr7_3:49243598-49243617 Msa1107510:CDS 60.0%
! AACACGGTTGCTGTGCCGGT+GGG + chr7_3:49243602-49243621 Msa1107510:CDS 60.0%
ATAGCAGCCCATCCTCCCAC+CGG - chr7_3:49243620-49243639 None:intergenic 60.0%
CAACACGGTTGCTGTGCCGG+TGG + chr7_3:49243601-49243620 Msa1107510:CDS 65.0%
! TTGCTGTGCCGGTGGGAGGA+TGG + chr7_3:49243609-49243628 Msa1107510:CDS 65.0%
! TGCTGTGCCGGTGGGAGGAT+GGG + chr7_3:49243610-49243629 Msa1107510:CDS 65.0%
! ACGGTTGCTGTGCCGGTGGG+AGG + chr7_3:49243605-49243624 Msa1107510:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 49240907 49244092 49240907 ID=Msa1107510;Name=Msa1107510
chr7_3 mRNA 49240907 49244092 49240907 ID=Msa1107510-mRNA-1;Parent=Msa1107510;Name=Msa1107510-mRNA-1;_AED=0.26;_eAED=0.26;_QI=36|1|0.8|1|1|1|5|186|572
chr7_3 exon 49240907 49241035 49240907 ID=Msa1107510-mRNA-1:exon:10001;Parent=Msa1107510-mRNA-1
chr7_3 exon 49241614 49241765 49241614 ID=Msa1107510-mRNA-1:exon:10002;Parent=Msa1107510-mRNA-1
chr7_3 exon 49242222 49242589 49242222 ID=Msa1107510-mRNA-1:exon:10003;Parent=Msa1107510-mRNA-1
chr7_3 exon 49242688 49243662 49242688 ID=Msa1107510-mRNA-1:exon:10004;Parent=Msa1107510-mRNA-1
chr7_3 exon 49243776 49244092 49243776 ID=Msa1107510-mRNA-1:exon:10005;Parent=Msa1107510-mRNA-1
chr7_3 five_prime_UTR 49240907 49240942 49240907 ID=Msa1107510-mRNA-1:five_prime_utr;Parent=Msa1107510-mRNA-1
chr7_3 CDS 49240943 49241035 49240943 ID=Msa1107510-mRNA-1:cds;Parent=Msa1107510-mRNA-1
chr7_3 CDS 49241614 49241765 49241614 ID=Msa1107510-mRNA-1:cds;Parent=Msa1107510-mRNA-1
chr7_3 CDS 49242222 49242589 49242222 ID=Msa1107510-mRNA-1:cds;Parent=Msa1107510-mRNA-1
chr7_3 CDS 49242688 49243662 49242688 ID=Msa1107510-mRNA-1:cds;Parent=Msa1107510-mRNA-1
chr7_3 CDS 49243776 49243906 49243776 ID=Msa1107510-mRNA-1:cds;Parent=Msa1107510-mRNA-1
chr7_3 three_prime_UTR 49243907 49244092 49243907 ID=Msa1107510-mRNA-1:three_prime_utr;Parent=Msa1107510-mRNA-1
Gene Sequence

>Msa1107510

ATGAAGATTTTGGTATTATGGCAAACATGGGCTTTTGCTCTAATTTTATCTTCATTTATGGCTTCTGCTGCTACAGTTGAACACACTTTCTTGGTTCAAAACAAGACAATTAAACGATTGTGCCATGAACAAGTGATTGTTACAGTTAATGGACTTTACCCAGGTCCAAAGCTGGAAGTCAGGGATGGTGACTCTGTGATTGTTCATGTAATCAACAATTCACCCTACAATATAACAATTCACTGGCATGGAGTGTTCCAGCTATATAGTGCATGGGCAGATGGTCCTGAATATATAACACAATGTCCAATTCGTCCTGAAAATAAATTTACATACAAATTTAATGTGACACAACAAGAAGGAACATTATGGTGGCATGCTCATGCATCAGTTGTACGTGCAACAGTTCATGGTGCCATTATCATTCAACCTCGTTCTGGTCGATTTCCATTTCCAAAACCCTACAAGGAAGTACCAATAATACTAGGTGATTGGTATGATGGAAATGTTGAGGAGATTATCCAAAAAGAACTCGAAACAGGTGATAAAATACCATCTGATGCTTTCACTATCAACGGCTTTCCTGGCGATCTCTTCAATTGTTCAAAAAATCAGATGTATAAGCTGAAAGTGAAGCAAGGAAAGACCTATTTGTTCCGAATGGTCAACGCTGCACTCGCGAACAATCTTTTCTTCAAGATTGCCGATCACAAATTCACAGTGGTAGCCATGGATGCCGCATACACCGAACCCTATACCACCGATATAATCGTCATCGCAGCAGGCCAAAGCGCTGATATACTTTTCACAGCAGACCAACCAAAAGGTTCATACTACATGGCTGCATCACCTTATGTTGTTGGTGAACCAGTAGGACTCTTCGACAATTCCACAACTCGTGCTGTCGTCTTTTACGAGGGTTACAAAAAATTAAAAACAAAACATTTAGTACCTTTGATGCCAGCATTACCACTTCATAACAATACACCAATAGCTCACAAATTTTTTAGCAACATAACTGGTCTTGTAGGGGTCCCTAATTGGGTCCCTGTCCCACTTGAAGTGGATGAACATATGTATATCACAATTAATATGGGTTTAGTACCTTGTCCTGTAAATGCTAAGTGTACAGGTCCACTTGGACAAAAATTTGCATCTAGCATGAACAATGAGTCATTTTTGCTTCCTGTTGGAAAAGGATATTCCATAATGGAAGCATATTTTTACAATGTGAGTGGCATTTACACTACAGATTTTCCAGATAACCCTCCAAAATTTTTCGACTTCGTAAACCCGAAAATATTTTTGGATCCTAATGTTACATTTACACCGAAATCGACTAAGGTGAAGCAATTCAAATACAATTCAACGGTGGAGGTCGTGTTTCAAAATACAGCGATTTTGAATGCTCAAAGTCATCCCATGCATCTTCATGGTATGAATTTTCATGTTTTGGCTCAAGACTTCGGGATTTTCAATCCTACTACCGATAAACTCAAGTATAATTTGGTGAATCCTTCAATTCGCAACACGGTTGCTGTGCCGGTGGGAGGATGGGCTGCTATTAGATTCCGAACTGACAATCCTGGGGTATGGTTTTTGCATTGTCATGTGGATGATCATAATCTATGGGGACTAGTCACAGCATTCATAGTTGAAAATGGACCAACACCTTCAACTTCACTTGGTCCACCACCTGCTGATTTGCCTAAATGTTAA

Protein sequence

>Msa1107510

MKILVLWQTWAFALILSSFMASAATVEHTFLVQNKTIKRLCHEQVIVTVNGLYPGPKLEVRDGDSVIVHVINNSPYNITIHWHGVFQLYSAWADGPEYITQCPIRPENKFTYKFNVTQQEGTLWWHAHASVVRATVHGAIIIQPRSGRFPFPKPYKEVPIILGDWYDGNVEEIIQKELETGDKIPSDAFTINGFPGDLFNCSKNQMYKLKVKQGKTYLFRMVNAALANNLFFKIADHKFTVVAMDAAYTEPYTTDIIVIAAGQSADILFTADQPKGSYYMAASPYVVGEPVGLFDNSTTRAVVFYEGYKKLKTKHLVPLMPALPLHNNTPIAHKFFSNITGLVGVPNWVPVPLEVDEHMYITINMGLVPCPVNAKCTGPLGQKFASSMNNESFLLPVGKGYSIMEAYFYNVSGIYTTDFPDNPPKFFDFVNPKIFLDPNVTFTPKSTKVKQFKYNSTVEVVFQNTAILNAQSHPMHLHGMNFHVLAQDFGIFNPTTDKLKYNLVNPSIRNTVAVPVGGWAAIRFRTDNPGVWFLHCHVDDHNLWGLVTAFIVENGPTPSTSLGPPPADLPKC*