AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0771810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771810 MtrunA17_Chr5g0425711 94.987 379 19 0 1 379 1 379 0.0 755
Msa0771810 MtrunA17_Chr3g0115661 71.965 346 87 4 30 373 24 361 0.0 515
Msa0771810 MtrunA17_Chr8g0382441 65.075 335 111 3 44 376 32 362 2.10e-157 447
Msa0771810 MtrunA17_Chr4g0056481 52.410 332 136 2 68 377 57 388 2.00e-124 364
Msa0771810 MtrunA17_Chr4g0018441 54.878 328 126 2 72 377 59 386 9.78e-122 357
Msa0771810 MtrunA17_Chr3g0079281 53.191 329 128 3 69 374 62 387 5.33e-119 350
Msa0771810 MtrunA17_Chr3g0126491 51.220 287 129 1 97 372 69 355 1.31e-102 307
Msa0771810 MtrunA17_Chr8g0347141 48.432 287 135 3 97 371 25 310 6.00e-97 291
Msa0771810 MtrunA17_Chr4g0018781 42.045 88 50 1 88 174 21 108 2.19e-13 65.9
Msa0771810 MtrunA17_Chr4g0018791 48.387 62 31 1 254 314 2 63 8.65e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771810 AT1G78090.1 59.740 385 128 6 1 373 1 370 8.36e-156 443
Msa0771810 AT5G10100.3 62.275 334 120 2 46 375 37 368 5.12e-151 431
Msa0771810 AT5G10100.1 62.275 334 120 2 46 375 48 379 6.23e-151 431
Msa0771810 AT5G65140.1 61.254 351 130 3 24 371 20 367 6.89e-151 431
Msa0771810 AT4G39770.1 63.551 321 112 2 56 374 30 347 1.58e-150 429
Msa0771810 AT2G22190.1 60.870 345 131 2 28 372 10 350 1.40e-149 427
Msa0771810 AT1G78090.2 60.108 371 121 6 1 359 1 356 1.43e-149 427
Msa0771810 AT1G35910.1 63.363 333 110 4 51 375 39 367 3.62e-149 426
Msa0771810 AT1G22210.1 63.782 312 103 3 69 373 9 317 1.27e-145 416
Msa0771810 AT4G39770.2 64.379 306 104 2 56 359 30 332 1.34e-144 413
Msa0771810 AT2G22190.2 61.446 332 124 2 28 359 10 337 1.76e-144 414
Msa0771810 AT5G10100.2 62.579 318 113 2 46 359 37 352 5.70e-144 412
Msa0771810 AT5G10100.4 57.485 334 116 3 46 375 48 359 8.86e-132 382
Msa0771810 AT5G65140.3 58.104 327 130 4 6 328 1 324 3.18e-129 374
Msa0771810 AT5G51460.2 55.452 321 126 4 69 372 62 382 1.73e-121 357
Msa0771810 AT5G51460.4 55.452 321 126 4 69 372 62 382 1.73e-121 357
Msa0771810 AT4G22590.1 54.180 323 129 3 71 374 50 372 1.43e-120 354
Msa0771810 AT5G51460.1 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0771810 AT5G51460.5 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0771810 AT5G51460.3 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0771810 AT4G12430.1 54.037 322 135 2 68 376 44 365 2.90e-117 345
Msa0771810 AT5G65140.2 59.155 284 110 3 24 304 20 300 8.03e-113 332

Find 103 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCCCTTGTCCCATTTAA+TGG 0.107672 5_2:-45262981 None:intergenic
AAATTCGACCAACCATTAAA+TGG 0.184228 5_2:+45262969 Msa0771810:CDS
AACTTCAGTGTCTGAATTAA+TGG 0.186430 5_2:+45261444 Msa0771810:CDS
TTTATGCCTCATTTGCAATA+TGG 0.223415 5_2:+45264010 Msa0771810:three_prime_UTR
TTGACACCGACCCAAGAATT+TGG 0.244483 5_2:+45263787 Msa0771810:three_prime_UTR
GGCATCCCTTGTTTGAAAAT+AGG 0.253122 5_2:+45263828 Msa0771810:three_prime_UTR
TTACTCATGTAGGCTTTATC+TGG 0.261967 5_2:-45261947 None:intergenic
AAGCCATGGGATGGATATTA+AGG 0.269464 5_2:+45262283 Msa0771810:CDS
AGGAATCTATAAATGAGTTT+AGG 0.278275 5_2:+45263761 Msa0771810:three_prime_UTR
CCTTGTGTTAGCTTTAGTTT+TGG 0.279314 5_2:-45262932 None:intergenic
AATTCAGACACTGAAGTTCT+TGG 0.288315 5_2:-45261439 None:intergenic
TTAGTGCTTCTCCTATTTGT+TGG 0.289846 5_2:-45262308 None:intergenic
GGAATCTATAAATGAGTTTA+GGG 0.305631 5_2:+45263762 Msa0771810:three_prime_UTR
GTGACTTTCCCAACATATTC+TGG 0.318648 5_2:-45261354 None:intergenic
GAGAAAACGAAGTGTGTTCC+AGG 0.327309 5_2:+45262616 Msa0771810:CDS
TTATGCCTCATTTGCAATAT+GGG 0.331313 5_2:+45264011 Msa0771810:three_prime_UTR
CGCAATAGGGGCCAAGGGTG+TGG 0.335378 5_2:+45263511 Msa0771810:CDS
TAAAGCCTACATGAGTAAAA+AGG 0.339761 5_2:+45261952 Msa0771810:CDS
CTACCCCTTGACCAAATTCT+TGG 0.346499 5_2:-45263798 None:intergenic
GGCTTACAGTCCAATGAGTT+TGG 0.362955 5_2:-45261624 None:intergenic
AAACAATCTCATTAAGCCTT+TGG 0.363708 5_2:+45261498 Msa0771810:CDS
TTATCTGGATCTGCTACAAT+TGG 0.368355 5_2:-45261932 None:intergenic
CAAATAATGTACAATACAAA+TGG 0.375691 5_2:+45261866 Msa0771810:CDS
AATGTATTTCCAATCTATAT+TGG 0.376405 5_2:+45263309 Msa0771810:CDS
CTTGAATTTCTTACCTCAGA+TGG 0.386100 5_2:-45263589 None:intergenic
TGTAGCTATTTAGCTTTGTA+AGG 0.388676 5_2:+45262237 Msa0771810:intron
GCTATTTAGCTTTGTAAGGT+TGG 0.390975 5_2:+45262241 Msa0771810:intron
GATTGTGAATGAGAGGTTAA+TGG 0.392429 5_2:+45261381 Msa0771810:CDS
TTTCCCACAGCCATTGTTAG+TGG 0.400255 5_2:+45262101 Msa0771810:CDS
GAATTAATGGCTTTGTTTGG+TGG 0.404929 5_2:+45261457 Msa0771810:CDS
TCTGAATTAATGGCTTTGTT+TGG 0.409233 5_2:+45261454 Msa0771810:CDS
CCCTTGTCCCATTTAATGGT+TGG 0.411248 5_2:-45262977 None:intergenic
AATTAATGGCTTTGTTTGGT+GGG 0.420794 5_2:+45261458 Msa0771810:CDS
TATTTAGAGTTGGGCACCAT+TGG 0.421897 5_2:+45262877 Msa0771810:intron
GGGTCAGGTTTATAAGATCT+TGG 0.424468 5_2:+45262591 Msa0771810:intron
GAGAAGAAGAACAAAGAGAG+AGG 0.440385 5_2:-45261262 None:intergenic
TATCTGGATCTGCTACAATT+GGG 0.442252 5_2:-45261931 None:intergenic
GCAATAGGGGCCAAGGGTGT+GGG 0.454198 5_2:+45263512 Msa0771810:CDS
ATATTAAGGGTCCAACAAAT+AGG 0.455858 5_2:+45262297 Msa0771810:CDS
CGATCGTCACCAATATAGAT+TGG 0.456578 5_2:-45263318 None:intergenic
AACCGATGAAGATGCTTTCA+AGG 0.459255 5_2:+45263341 Msa0771810:CDS
TGGTCAAGGGGTAGTTCAAA+TGG 0.461231 5_2:+45263807 Msa0771810:three_prime_UTR
ATAGAGAAGAACAGAGAGAT+GGG 0.461260 5_2:-45261234 None:intergenic
TACCCCTTGACCAAATTCTT+GGG 0.470345 5_2:-45263797 None:intergenic
TCTTGGTAAAACATTAGAGT+TGG 0.472981 5_2:-45261422 None:intergenic
AAAATCGTGACCAAACTCAT+TGG 0.474132 5_2:+45261614 Msa0771810:CDS
GCTACGAACCTCATTGATCA+TGG 0.476130 5_2:-45262466 None:intergenic
TTATACATTGAAACAAGAAA+AGG 0.479182 5_2:-45263929 None:intergenic
GATAGAGAAGAACAGAGAGA+TGG 0.479405 5_2:-45261235 None:intergenic
ATGACTAACCAGAATATGTT+GGG 0.482279 5_2:+45261346 Msa0771810:CDS
AATTCGACCAACCATTAAAT+GGG 0.483720 5_2:+45262970 Msa0771810:CDS
TTATACTATGCTGGAAGCCA+TGG 0.484718 5_2:+45262269 Msa0771810:CDS
CCATTAAATGGGACAAGGGA+AGG 0.493371 5_2:+45262981 Msa0771810:CDS
AATGACTAACCAGAATATGT+TGG 0.502586 5_2:+45261345 Msa0771810:exon
TTGGCTGAATTATACTATGC+TGG 0.505769 5_2:+45262260 Msa0771810:CDS
AAATAATGTACAATACAAAT+GGG 0.510120 5_2:+45261867 Msa0771810:CDS
TTAGATGAGAGTGACATTGA+AGG 0.514001 5_2:+45262064 Msa0771810:intron
AATGTCCCATATTGCAAATG+AGG 0.515183 5_2:-45264016 None:intergenic
GAAGTGTGTTCCAGGGGCTA+TGG 0.519970 5_2:+45262624 Msa0771810:CDS
TATACATTGAAACAAGAAAA+GGG 0.529645 5_2:-45263928 None:intergenic
AGCCATGGGATGGATATTAA+GGG 0.535930 5_2:+45262284 Msa0771810:CDS
TACCTTGAAAGCATCTTCAT+CGG 0.538497 5_2:-45263343 None:intergenic
AACACAAGGGAGAAAAGTGT+TGG 0.542726 5_2:+45262946 Msa0771810:CDS
AGTAGGAGAAGAAGCTCTCA+TGG 0.543615 5_2:-45261572 None:intergenic
CTCACAAGTTGTAGAGAGCT+AGG 0.543818 5_2:+45263741 Msa0771810:exon
TTGAACATGTTCAAAGCAGA+AGG 0.546219 5_2:-45261842 None:intergenic
CACACGTTTGCATGCGCATG+CGG 0.547592 5_2:+45263969 Msa0771810:three_prime_UTR
GACCCTTAATATCCATCCCA+TGG 0.547681 5_2:-45262286 None:intergenic
GTGTGTTCCAGGGGCTATGG+TGG 0.549508 5_2:+45262627 Msa0771810:CDS
TCTTCCACTAACAATGGCTG+TGG 0.554269 5_2:-45262105 None:intergenic
ATACAAGAATCCCACACCCT+TGG 0.561032 5_2:-45263522 None:intergenic
AGAAGAAGAACAAAGAGAGA+GGG 0.561584 5_2:-45261261 None:intergenic
ATCTGGATCTGCTACAATTG+GGG 0.562431 5_2:-45261930 None:intergenic
AAGCTTACTTGTTCAGCCAA+TGG 0.567677 5_2:-45262893 None:intergenic
CATTAAATGGGACAAGGGAA+GGG 0.571676 5_2:+45262982 Msa0771810:CDS
ACATGTTCAAAGCAGAAGGA+TGG 0.573560 5_2:-45261838 None:intergenic
TGATCATTATCATCTTCCAA+AGG 0.579315 5_2:-45261514 None:intergenic
ATGGGCAAGAATTCACTAGC+AGG 0.580507 5_2:-45262447 None:intergenic
GATTCGTGTCTGGTTCGAGT+AGG 0.581250 5_2:-45261589 None:intergenic
CTATGCTGGAAGCCATGGGA+TGG 0.581523 5_2:+45262274 Msa0771810:CDS
CCTTGACCAAATTCTTGGGT+CGG 0.585466 5_2:-45263793 None:intergenic
CCAAAACTAAAGCTAACACA+AGG 0.588195 5_2:+45262932 Msa0771810:CDS
CGACCCAAGAATTTGGTCAA+GGG 0.600225 5_2:+45263794 Msa0771810:three_prime_UTR
CTACGAACCTCATTGATCAT+GGG 0.600560 5_2:-45262465 None:intergenic
TCAGGTTTATAAGATCTTGG+TGG 0.601263 5_2:+45262594 Msa0771810:intron
TATACTATGCTGGAAGCCAT+GGG 0.609558 5_2:+45262270 Msa0771810:CDS
TATTGTACTTAATGTACGTG+TGG 0.617017 5_2:+45264056 Msa0771810:three_prime_UTR
ACCAACCATTAAATGGGACA+AGG 0.627155 5_2:+45262976 Msa0771810:CDS
CACTTTGCAAGATCCATCTG+AGG 0.628755 5_2:+45263576 Msa0771810:CDS
TAAGCATCTTCCACTAACAA+TGG 0.635138 5_2:-45262111 None:intergenic
AGAAAACGAAGTGTGTTCCA+GGG 0.637437 5_2:+45262617 Msa0771810:CDS
ATTTCAGGGTAATAATGATG+AGG 0.638286 5_2:+45262413 Msa0771810:intron
CTTCCACTAACAATGGCTGT+GGG 0.639958 5_2:-45262104 None:intergenic
GACCCAAGAATTTGGTCAAG+GGG 0.641032 5_2:+45263795 Msa0771810:three_prime_UTR
ATTCTTGCCCATGATCAATG+AGG 0.645083 5_2:+45262458 Msa0771810:CDS
CCGACCCAAGAATTTGGTCA+AGG 0.645146 5_2:+45263793 Msa0771810:three_prime_UTR
GAAGATGATAATGATCACAA+AGG 0.653543 5_2:+45261520 Msa0771810:CDS
CACGTGTGATTGTGAATGAG+AGG 0.660978 5_2:+45261374 Msa0771810:CDS
GAGCAACTAAAGTTAACGCG+TGG 0.664842 5_2:+45261542 Msa0771810:CDS
GAAAACGAAGTGTGTTCCAG+GGG 0.667596 5_2:+45262618 Msa0771810:CDS
CCAACCATTAAATGGGACAA+GGG 0.680428 5_2:+45262977 Msa0771810:CDS
CAAAACTAAAGCTAACACAA+GGG 0.690741 5_2:+45262933 Msa0771810:CDS
TAGTGGAAGATGCTTAGACA+AGG 0.695626 5_2:+45262118 Msa0771810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAATAAATT+AGG - chr5_2:45262564-45262583 None:intergenic 0.0%
!!! TTTTATTTTATTTTTATATT+TGG + chr5_2:45262570-45262589 Msa0771810:intron 0.0%
!!! TTTATTTTATTTTTATATTT+GGG + chr5_2:45262571-45262590 Msa0771810:intron 0.0%
!! AATTAATTCCATTAATAAAT+TGG + chr5_2:45263071-45263090 Msa0771810:intron 10.0%
!!! TAATTTTTATAAAGTTAGTA+AGG - chr5_2:45263380-45263399 None:intergenic 10.0%
!! AATAAAAATGTTAATATATG+TGG - chr5_2:45263418-45263437 None:intergenic 10.0%
!!! TTCATTTAAATTTTGTATAT+AGG + chr5_2:45263667-45263686 Msa0771810:intron 10.0%
!!! TTCCATAATTTTAATTTTTA+GGG + chr5_2:45263869-45263888 Msa0771810:three_prime_UTR 10.0%
!! AAATAATGTACAATACAAAT+GGG + chr5_2:45261867-45261886 Msa0771810:CDS 15.0%
!! ATTTCATCTATTATTATTTC+AGG + chr5_2:45262398-45262417 Msa0771810:intron 15.0%
!! TTTCATCTATTATTATTTCA+GGG + chr5_2:45262399-45262418 Msa0771810:intron 15.0%
!!! TTTAAAGTATTTCTATACTT+AGG + chr5_2:45262737-45262756 Msa0771810:intron 15.0%
!!! ATTTTGTTTTATTTAGAGTT+GGG + chr5_2:45262868-45262887 Msa0771810:intron 15.0%
!! TATTTGTACCAATTTATTAA+TGG - chr5_2:45263082-45263101 None:intergenic 15.0%
!! AATTTGGATATGAATAATAT+AGG + chr5_2:45263483-45263502 Msa0771810:intron 15.0%
!!! TTTAAATTTTGTATATAGGT+TGG + chr5_2:45263671-45263690 Msa0771810:intron 15.0%
!!! GTTCCATAATTTTAATTTTT+AGG + chr5_2:45263868-45263887 Msa0771810:three_prime_UTR 15.0%
!! GTTATGATTCTAAATTATGT+CGG + chr5_2:45261683-45261702 Msa0771810:intron 20.0%
!! CAAATAATGTACAATACAAA+TGG + chr5_2:45261866-45261885 Msa0771810:CDS 20.0%
!! ATGGTGTAACTAAAAAAATT+TGG - chr5_2:45262513-45262532 None:intergenic 20.0%
!! AAATAAAATAAATTAGGCAC+AGG - chr5_2:45262558-45262577 None:intergenic 20.0%
!!! TTTATTTTTATATTTGGGTC+AGG + chr5_2:45262576-45262595 Msa0771810:intron 20.0%
!!! ATAACAAAGTTTCTAAAACA+TGG + chr5_2:45262841-45262860 Msa0771810:intron 20.0%
!!! TAACAAAGTTTCTAAAACAT+GGG + chr5_2:45262842-45262861 Msa0771810:intron 20.0%
!!! CATTTTGTTTTATTTAGAGT+TGG + chr5_2:45262867-45262886 Msa0771810:intron 20.0%
!! TTAATGGAATTAATTCTCAA+AGG - chr5_2:45263066-45263085 None:intergenic 20.0%
!!! TAAACAAAAGTTGACTTTTT+AGG + chr5_2:45263135-45263154 Msa0771810:intron 20.0%
!! AATGTATTTCCAATCTATAT+TGG + chr5_2:45263309-45263328 Msa0771810:CDS 20.0%
!!! TATTTCCTATTTTCAAACAA+GGG - chr5_2:45263836-45263855 None:intergenic 20.0%
!! GTCCCTAAAAATTAAAATTA+TGG - chr5_2:45263874-45263893 None:intergenic 20.0%
!! TATACATTGAAACAAGAAAA+GGG - chr5_2:45263931-45263950 None:intergenic 20.0%
!! TTATACATTGAAACAAGAAA+AGG - chr5_2:45263932-45263951 None:intergenic 20.0%
!!! TTTTTGGTGTGTAAGTAATA+AGG - chr5_2:45261648-45261667 None:intergenic 25.0%
! GCAAGTTAGAATTATGATTA+CGG + chr5_2:45261760-45261779 Msa0771810:intron 25.0%
!! ATAGTTTTTCTTGACTATGA+TGG + chr5_2:45261899-45261918 Msa0771810:CDS 25.0%
! GTGTAACTAAAAAAATTTGG+TGG - chr5_2:45262510-45262529 None:intergenic 25.0%
! ATAAAACACGTTAATGATGA+TGG + chr5_2:45262785-45262804 Msa0771810:intron 25.0%
! TAAAACACGTTAATGATGAT+GGG + chr5_2:45262786-45262805 Msa0771810:intron 25.0%
!!! CTTTTGTTTATAATAGTGAC+CGG - chr5_2:45263125-45263144 None:intergenic 25.0%
! AGGAATCTATAAATGAGTTT+AGG + chr5_2:45263761-45263780 Msa0771810:three_prime_UTR 25.0%
! GGAATCTATAAATGAGTTTA+GGG + chr5_2:45263762-45263781 Msa0771810:three_prime_UTR 25.0%
!! CTATTTCCTATTTTCAAACA+AGG - chr5_2:45263837-45263856 None:intergenic 25.0%
! AGAGAAAAAGAGAATCTATT+TGG - chr5_2:45263905-45263924 None:intergenic 25.0%
AATGACTAACCAGAATATGT+TGG + chr5_2:45261345-45261364 Msa0771810:exon 30.0%
ATGACTAACCAGAATATGTT+GGG + chr5_2:45261346-45261365 Msa0771810:CDS 30.0%
TCTTGGTAAAACATTAGAGT+TGG - chr5_2:45261425-45261444 None:intergenic 30.0%
AACTTCAGTGTCTGAATTAA+TGG + chr5_2:45261444-45261463 Msa0771810:CDS 30.0%
!! TCTGAATTAATGGCTTTGTT+TGG + chr5_2:45261454-45261473 Msa0771810:CDS 30.0%
!! AATTAATGGCTTTGTTTGGT+GGG + chr5_2:45261458-45261477 Msa0771810:CDS 30.0%
!!! TAATGAGATTGTTTTTGTGC+TGG - chr5_2:45261492-45261511 None:intergenic 30.0%
AAACAATCTCATTAAGCCTT+TGG + chr5_2:45261498-45261517 Msa0771810:CDS 30.0%
TGATCATTATCATCTTCCAA+AGG - chr5_2:45261517-45261536 None:intergenic 30.0%
! GAAGATGATAATGATCACAA+AGG + chr5_2:45261520-45261539 Msa0771810:CDS 30.0%
!!! CTAGTCAAACAGTCTTTTTT+TGG - chr5_2:45261664-45261683 None:intergenic 30.0%
TGCTATACTACAGATAAATG+TGG - chr5_2:45261709-45261728 None:intergenic 30.0%
GTTAGAATTATGATTACGGT+TGG + chr5_2:45261764-45261783 Msa0771810:intron 30.0%
TAAAGCCTACATGAGTAAAA+AGG + chr5_2:45261952-45261971 Msa0771810:CDS 30.0%
! ACAAACCTTTTTACTCATGT+AGG - chr5_2:45261960-45261979 None:intergenic 30.0%
! TTTTCACTAACGTTTGATTC+TGG + chr5_2:45261985-45262004 Msa0771810:intron 30.0%
!! TGTAGCTATTTAGCTTTGTA+AGG + chr5_2:45262237-45262256 Msa0771810:intron 30.0%
ATATTAAGGGTCCAACAAAT+AGG + chr5_2:45262297-45262316 Msa0771810:CDS 30.0%
ATTTCAGGGTAATAATGATG+AGG + chr5_2:45262413-45262432 Msa0771810:intron 30.0%
!!! CTTGTGTTAGCTTTAGTTTT+GGG - chr5_2:45262934-45262953 None:intergenic 30.0%
CAAAACTAAAGCTAACACAA+GGG + chr5_2:45262933-45262952 Msa0771810:CDS 30.0%
AAATTCGACCAACCATTAAA+TGG + chr5_2:45262969-45262988 Msa0771810:CDS 30.0%
AATTCGACCAACCATTAAAT+GGG + chr5_2:45262970-45262989 Msa0771810:CDS 30.0%
! CTTTTGCTTATAATAGTGAC+CGG + chr5_2:45263224-45263243 Msa0771810:intron 30.0%
TAATTAACACATATTCCCTC+CGG - chr5_2:45263246-45263265 None:intergenic 30.0%
! TAATATAGGTTTTGCGCAAT+AGG + chr5_2:45263497-45263516 Msa0771810:intron 30.0%
! AATATAGGTTTTGCGCAATA+GGG + chr5_2:45263498-45263517 Msa0771810:intron 30.0%
!! TATAGGTTGGACAATTTTTG+CGG + chr5_2:45263684-45263703 Msa0771810:intron 30.0%
TTTATGCCTCATTTGCAATA+TGG + chr5_2:45264010-45264029 Msa0771810:three_prime_UTR 30.0%
TTATGCCTCATTTGCAATAT+GGG + chr5_2:45264011-45264030 Msa0771810:three_prime_UTR 30.0%
TATTGTACTTAATGTACGTG+TGG + chr5_2:45264056-45264075 Msa0771810:three_prime_UTR 30.0%
ATAGAGAAGAACAGAGAGAT+GGG - chr5_2:45261237-45261256 None:intergenic 35.0%
AGAAGAAGAACAAAGAGAGA+GGG - chr5_2:45261264-45261283 None:intergenic 35.0%
GATTGTGAATGAGAGGTTAA+TGG + chr5_2:45261381-45261400 Msa0771810:CDS 35.0%
AATTCAGACACTGAAGTTCT+TGG - chr5_2:45261442-45261461 None:intergenic 35.0%
!! GAATTAATGGCTTTGTTTGG+TGG + chr5_2:45261457-45261476 Msa0771810:CDS 35.0%
AAAATCGTGACCAAACTCAT+TGG + chr5_2:45261614-45261633 Msa0771810:CDS 35.0%
TTGAACATGTTCAAAGCAGA+AGG - chr5_2:45261845-45261864 None:intergenic 35.0%
TATCTGGATCTGCTACAATT+GGG - chr5_2:45261934-45261953 None:intergenic 35.0%
TTATCTGGATCTGCTACAAT+TGG - chr5_2:45261935-45261954 None:intergenic 35.0%
! TTACTCATGTAGGCTTTATC+TGG - chr5_2:45261950-45261969 None:intergenic 35.0%
TTAGATGAGAGTGACATTGA+AGG + chr5_2:45262064-45262083 Msa0771810:intron 35.0%
TAAGCATCTTCCACTAACAA+TGG - chr5_2:45262114-45262133 None:intergenic 35.0%
!! GCTATTTAGCTTTGTAAGGT+TGG + chr5_2:45262241-45262260 Msa0771810:intron 35.0%
TTGGCTGAATTATACTATGC+TGG + chr5_2:45262260-45262279 Msa0771810:CDS 35.0%
TTAGTGCTTCTCCTATTTGT+TGG - chr5_2:45262311-45262330 None:intergenic 35.0%
CTCTATCCAAATTATTGCGA+CGG + chr5_2:45262349-45262368 Msa0771810:intron 35.0%
TAATCTCCGTCGCAATAATT+TGG - chr5_2:45262358-45262377 None:intergenic 35.0%
TTAGTTACACCATTCCCATT+AGG + chr5_2:45262520-45262539 Msa0771810:intron 35.0%
GGTAAAATCCCATACCTAAT+GGG - chr5_2:45262537-45262556 None:intergenic 35.0%
AGGTAAAATCCCATACCTAA+TGG - chr5_2:45262538-45262557 None:intergenic 35.0%
TCAGGTTTATAAGATCTTGG+TGG + chr5_2:45262594-45262613 Msa0771810:intron 35.0%
!!! CCTTGTGTTAGCTTTAGTTT+TGG - chr5_2:45262935-45262954 None:intergenic 35.0%
CCAAAACTAAAGCTAACACA+AGG + chr5_2:45262932-45262951 Msa0771810:CDS 35.0%
! GAATTTTTGCTAGAGTCACT+TGG + chr5_2:45263010-45263029 Msa0771810:CDS 35.0%
TGTTTATAATAGTGACCGGA+GGG - chr5_2:45263121-45263140 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG - chr5_2:45263122-45263141 None:intergenic 35.0%
!! TACCTTGAAAGCATCTTCAT+CGG - chr5_2:45263346-45263365 None:intergenic 35.0%
! GCTATGCTAACTTGTCAATT+TGG + chr5_2:45263467-45263486 Msa0771810:intron 35.0%
! ATATAGGTTTTGCGCAATAG+GGG + chr5_2:45263499-45263518 Msa0771810:intron 35.0%
CTTGAATTTCTTACCTCAGA+TGG - chr5_2:45263592-45263611 None:intergenic 35.0%
AATGTCCCATATTGCAAATG+AGG - chr5_2:45264019-45264038 None:intergenic 35.0%
!!! CAGAGCTTTTCAAGTTGAAT+AGG - chr5_2:45264109-45264128 None:intergenic 35.0%
GATAGAGAAGAACAGAGAGA+TGG - chr5_2:45261238-45261257 None:intergenic 40.0%
GAGAAGAAGAACAAAGAGAG+AGG - chr5_2:45261265-45261284 None:intergenic 40.0%
GTGACTTTCCCAACATATTC+TGG - chr5_2:45261357-45261376 None:intergenic 40.0%
!! ACGATTTTCTGATTCGTGTC+TGG - chr5_2:45261602-45261621 None:intergenic 40.0%
ACAGACAAATGTGACTGATG+AGG + chr5_2:45261731-45261750 Msa0771810:intron 40.0%
ACATGTTCAAAGCAGAAGGA+TGG - chr5_2:45261841-45261860 None:intergenic 40.0%
ATCTGGATCTGCTACAATTG+GGG - chr5_2:45261933-45261952 None:intergenic 40.0%
TAGTGGAAGATGCTTAGACA+AGG + chr5_2:45262118-45262137 Msa0771810:CDS 40.0%
TTATACTATGCTGGAAGCCA+TGG + chr5_2:45262269-45262288 Msa0771810:CDS 40.0%
TATACTATGCTGGAAGCCAT+GGG + chr5_2:45262270-45262289 Msa0771810:CDS 40.0%
AAGCCATGGGATGGATATTA+AGG + chr5_2:45262283-45262302 Msa0771810:CDS 40.0%
AGCCATGGGATGGATATTAA+GGG + chr5_2:45262284-45262303 Msa0771810:CDS 40.0%
ATTCTTGCCCATGATCAATG+AGG + chr5_2:45262458-45262477 Msa0771810:CDS 40.0%
CTACGAACCTCATTGATCAT+GGG - chr5_2:45262468-45262487 None:intergenic 40.0%
TACACCATTCCCATTAGGTA+TGG + chr5_2:45262525-45262544 Msa0771810:intron 40.0%
ACACCATTCCCATTAGGTAT+GGG + chr5_2:45262526-45262545 Msa0771810:intron 40.0%
AATCCCATACCTAATGGGAA+TGG - chr5_2:45262532-45262551 None:intergenic 40.0%
GGGTCAGGTTTATAAGATCT+TGG + chr5_2:45262591-45262610 Msa0771810:intron 40.0%
AGAAAACGAAGTGTGTTCCA+GGG + chr5_2:45262617-45262636 Msa0771810:CDS 40.0%
! TTTTCGCAACGTTGACGAAA+AGG + chr5_2:45262678-45262697 Msa0771810:CDS 40.0%
CGTTGACGAAAAGGTAACAA+TGG + chr5_2:45262687-45262706 Msa0771810:intron 40.0%
! TATTTAGAGTTGGGCACCAT+TGG + chr5_2:45262877-45262896 Msa0771810:intron 40.0%
AAGCTTACTTGTTCAGCCAA+TGG - chr5_2:45262896-45262915 None:intergenic 40.0%
! AACACAAGGGAGAAAAGTGT+TGG + chr5_2:45262946-45262965 Msa0771810:CDS 40.0%
ACCAACCATTAAATGGGACA+AGG + chr5_2:45262976-45262995 Msa0771810:CDS 40.0%
CCAACCATTAAATGGGACAA+GGG + chr5_2:45262977-45262996 Msa0771810:CDS 40.0%
CATTAAATGGGACAAGGGAA+GGG + chr5_2:45262982-45263001 Msa0771810:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr5_2:45263227-45263246 Msa0771810:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr5_2:45263228-45263247 Msa0771810:intron 40.0%
CGATCGTCACCAATATAGAT+TGG - chr5_2:45263321-45263340 None:intergenic 40.0%
AACCGATGAAGATGCTTTCA+AGG + chr5_2:45263341-45263360 Msa0771810:CDS 40.0%
! TGGACAATTTTTGCGGCATT+TGG + chr5_2:45263691-45263710 Msa0771810:CDS 40.0%
! ACAATTTTTGCGGCATTTGG+TGG + chr5_2:45263694-45263713 Msa0771810:CDS 40.0%
TACCCCTTGACCAAATTCTT+GGG - chr5_2:45263800-45263819 None:intergenic 40.0%
! GGCATCCCTTGTTTGAAAAT+AGG + chr5_2:45263828-45263847 Msa0771810:three_prime_UTR 40.0%
CACGTGTGATTGTGAATGAG+AGG + chr5_2:45261374-45261393 Msa0771810:CDS 45.0%
!!! GCTTTGTTTGGTGGGCTTTT+AGG + chr5_2:45261466-45261485 Msa0771810:CDS 45.0%
GAGCAACTAAAGTTAACGCG+TGG + chr5_2:45261542-45261561 Msa0771810:CDS 45.0%
AGTAGGAGAAGAAGCTCTCA+TGG - chr5_2:45261575-45261594 None:intergenic 45.0%
GGCTTACAGTCCAATGAGTT+TGG - chr5_2:45261627-45261646 None:intergenic 45.0%
TTTCCCACAGCCATTGTTAG+TGG + chr5_2:45262101-45262120 Msa0771810:CDS 45.0%
CTTCCACTAACAATGGCTGT+GGG - chr5_2:45262107-45262126 None:intergenic 45.0%
TCTTCCACTAACAATGGCTG+TGG - chr5_2:45262108-45262127 None:intergenic 45.0%
GACCCTTAATATCCATCCCA+TGG - chr5_2:45262289-45262308 None:intergenic 45.0%
ATGGGCAAGAATTCACTAGC+AGG - chr5_2:45262450-45262469 None:intergenic 45.0%
GCTACGAACCTCATTGATCA+TGG - chr5_2:45262469-45262488 None:intergenic 45.0%
GAGAAAACGAAGTGTGTTCC+AGG + chr5_2:45262616-45262635 Msa0771810:CDS 45.0%
GAAAACGAAGTGTGTTCCAG+GGG + chr5_2:45262618-45262637 Msa0771810:CDS 45.0%
! TTATTTTCCACCATAGCCCC+TGG - chr5_2:45262637-45262656 None:intergenic 45.0%
CCCTTGTCCCATTTAATGGT+TGG - chr5_2:45262980-45262999 None:intergenic 45.0%
CCTTCCCTTGTCCCATTTAA+TGG - chr5_2:45262984-45263003 None:intergenic 45.0%
CCATTAAATGGGACAAGGGA+AGG + chr5_2:45262981-45263000 Msa0771810:CDS 45.0%
TTCATGAGATGTACTCCCTC+CGG + chr5_2:45263103-45263122 Msa0771810:intron 45.0%
ATACAAGAATCCCACACCCT+TGG - chr5_2:45263525-45263544 None:intergenic 45.0%
CACTTTGCAAGATCCATCTG+AGG + chr5_2:45263576-45263595 Msa0771810:CDS 45.0%
!! TTTTGCGGCATTTGGTGGAT+TGG + chr5_2:45263699-45263718 Msa0771810:CDS 45.0%
CTCACAAGTTGTAGAGAGCT+AGG + chr5_2:45263741-45263760 Msa0771810:exon 45.0%
TTGACACCGACCCAAGAATT+TGG + chr5_2:45263787-45263806 Msa0771810:three_prime_UTR 45.0%
CCTTGACCAAATTCTTGGGT+CGG - chr5_2:45263796-45263815 None:intergenic 45.0%
CGACCCAAGAATTTGGTCAA+GGG + chr5_2:45263794-45263813 Msa0771810:three_prime_UTR 45.0%
GACCCAAGAATTTGGTCAAG+GGG + chr5_2:45263795-45263814 Msa0771810:three_prime_UTR 45.0%
CTACCCCTTGACCAAATTCT+TGG - chr5_2:45263801-45263820 None:intergenic 45.0%
TGGTCAAGGGGTAGTTCAAA+TGG + chr5_2:45263807-45263826 Msa0771810:three_prime_UTR 45.0%
!!! TTTTTTCTATATAATTAATT+TGG + chr5_2:45262193-45262212 Msa0771810:intron 5.0%
!!! TATTTTATTTTTTAATATCT+AGG + chr5_2:45263270-45263289 Msa0771810:intron 5.0%
! GATTCGTGTCTGGTTCGAGT+AGG - chr5_2:45261592-45261611 None:intergenic 50.0%
! TTTTGCGCAATAGGGGCCAA+GGG + chr5_2:45263506-45263525 Msa0771810:CDS 50.0%
CCGACCCAAGAATTTGGTCA+AGG + chr5_2:45263793-45263812 Msa0771810:three_prime_UTR 50.0%
CTATGCTGGAAGCCATGGGA+TGG + chr5_2:45262274-45262293 Msa0771810:CDS 55.0%
GAAGTGTGTTCCAGGGGCTA+TGG + chr5_2:45262624-45262643 Msa0771810:CDS 55.0%
! GTTTTGCGCAATAGGGGCCA+AGG + chr5_2:45263505-45263524 Msa0771810:CDS 55.0%
CACACGTTTGCATGCGCATG+CGG + chr5_2:45263969-45263988 Msa0771810:three_prime_UTR 55.0%
GTGTGTTCCAGGGGCTATGG+TGG + chr5_2:45262627-45262646 Msa0771810:CDS 60.0%
! GCAATAGGGGCCAAGGGTGT+GGG + chr5_2:45263512-45263531 Msa0771810:CDS 60.0%
CGCAATAGGGGCCAAGGGTG+TGG + chr5_2:45263511-45263530 Msa0771810:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 45261228 45264130 45261228 ID=Msa0771810;Name=Msa0771810
chr5_2 mRNA 45261228 45264130 45261228 ID=Msa0771810-mRNA-1;Parent=Msa0771810;Name=Msa0771810-mRNA-1;_AED=0.12;_eAED=0.12;_QI=118|1|1|1|1|1|10|376|379
chr5_2 exon 45261228 45261639 45261228 ID=Msa0771810-mRNA-1:exon:13676;Parent=Msa0771810-mRNA-1
chr5_2 exon 45261833 45261973 45261833 ID=Msa0771810-mRNA-1:exon:13677;Parent=Msa0771810-mRNA-1
chr5_2 exon 45262068 45262139 45262068 ID=Msa0771810-mRNA-1:exon:13678;Parent=Msa0771810-mRNA-1
chr5_2 exon 45262242 45262334 45262242 ID=Msa0771810-mRNA-1:exon:13679;Parent=Msa0771810-mRNA-1
chr5_2 exon 45262420 45262479 45262420 ID=Msa0771810-mRNA-1:exon:13680;Parent=Msa0771810-mRNA-1
chr5_2 exon 45262598 45262699 45262598 ID=Msa0771810-mRNA-1:exon:13681;Parent=Msa0771810-mRNA-1
chr5_2 exon 45262884 45263031 45262884 ID=Msa0771810-mRNA-1:exon:13682;Parent=Msa0771810-mRNA-1
chr5_2 exon 45263292 45263362 45263292 ID=Msa0771810-mRNA-1:exon:13683;Parent=Msa0771810-mRNA-1
chr5_2 exon 45263505 45263597 45263505 ID=Msa0771810-mRNA-1:exon:13684;Parent=Msa0771810-mRNA-1
chr5_2 exon 45263689 45264130 45263689 ID=Msa0771810-mRNA-1:exon:13685;Parent=Msa0771810-mRNA-1
chr5_2 five_prime_UTR 45261228 45261345 45261228 ID=Msa0771810-mRNA-1:five_prime_utr;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45261346 45261639 45261346 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45261833 45261973 45261833 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45262068 45262139 45262068 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45262242 45262334 45262242 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45262420 45262479 45262420 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45262598 45262699 45262598 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45262884 45263031 45262884 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45263292 45263362 45263292 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45263505 45263597 45263505 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 CDS 45263689 45263754 45263689 ID=Msa0771810-mRNA-1:cds;Parent=Msa0771810-mRNA-1
chr5_2 three_prime_UTR 45263755 45264130 45263755 ID=Msa0771810-mRNA-1:three_prime_utr;Parent=Msa0771810-mRNA-1
Gene Sequence

>Msa0771810

ATGACTAACCAGAATATGTTGGGAAAGTCACGTGTGATTGTGAATGAGAGGTTAATGGAGTTAGCAATGTCTATTTCCAACTCTAATGTTTTACCAAGAACTTCAGTGTCTGAATTAATGGCTTTGTTTGGTGGGCTTTTAGGCCAGCACAAAAACAATCTCATTAAGCCTTTGGAAGATGATAATGATCACAAAGGAGCAACTAAAGTTAACGCGTGGATCGATTCCATGAGAGCTTCTTCTCCTACTCGAACCAGACACGAATCAGAAAATCGTGACCAAACTCATTGGACTCTTTTCCATCCTTCTGCTTTGAACATGTTCAATCAAATAATGTACAATACAAATGGGAAACAAATTATAGTTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTAGCAGATCCAGATAAAGCCTACATGAGTAAAAAGATGAGAGTGACATTGAAGGACATAGCAAGACATTTTCCCACAGCCATTGTTAGTGGAAGATGCTTAGACAAGCTATTTAGCTTTGTAAGGTTGGCTGAATTATACTATGCTGGAAGCCATGGGATGGATATTAAGGGTCCAACAAATAGGAGAAGCACTAAAAAAGGTAATAATGATGAGGTACTTTTGCAGCCTGCTAGTGAATTCTTGCCCATGATCAATGAGGTTTATAAGATCTTGGTGGAGAAAACGAAGTGTGTTCCAGGGGCTATGGTGGAAAATAACAAATTTTGTTTGTCTGTACATTTTCGCAACGTTGACGAAAAGAGTTGGGCACCATTGGCTGAACAAGTAAGCTTAGTGCTGAATGATTACCCAAAACTAAAGCTAACACAAGGGAGAAAAGTGTTGGAAATTCGACCAACCATTAAATGGGACAAGGGAAGGGCTCTTGAATTTTTGCTAGAGTCACTTGGATTTGCAAATTCTAAGAATGTATTTCCAATCTATATTGGTGACGATCGAACCGATGAAGATGCTTTCAAGGTTTTGCGCAATAGGGGCCAAGGGTGTGGGATTCTTGTATCTAAAATTTCAAAAGAAACTAATGCTTCTTACACTTTGCAAGATCCATCTGAGGTTGGACAATTTTTGCGGCATTTGGTGGATTGGAAAAGAACAAGTTCTCGTTCTCACAAGTTGTAG

Protein sequence

>Msa0771810

MTNQNMLGKSRVIVNERLMELAMSISNSNVLPRTSVSELMALFGGLLGQHKNNLIKPLEDDNDHKGATKVNAWIDSMRASSPTRTRHESENRDQTHWTLFHPSALNMFNQIMYNTNGKQIIVFLDYDGTLSPIVADPDKAYMSKKMRVTLKDIARHFPTAIVSGRCLDKLFSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNNDEVLLQPASEFLPMINEVYKILVEKTKCVPGAMVENNKFCLSVHFRNVDEKSWAPLAEQVSLVLNDYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGFANSKNVFPIYIGDDRTDEDAFKVLRNRGQGCGILVSKISKETNASYTLQDPSEVGQFLRHLVDWKRTSSRSHKL*