Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165910 | XP_013468166.1 | 74.477 | 239 | 6 | 2 | 1 | 184 | 1 | 239 | 7.84e-115 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165910 | sp|Q9LVV5|TL15B_ARATH | 51.397 | 179 | 34 | 2 | 59 | 184 | 45 | 223 | 3.37e-51 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165910 | A0A072VL83 | 74.477 | 239 | 6 | 2 | 1 | 184 | 1 | 239 | 3.74e-115 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032400 | Msa0165910 | 0.806127 | 9.563555e-50 | -8.615850e-47 |
| Msa0048020 | Msa0165910 | 0.813516 | 2.460720e-51 | -8.615850e-47 |
| Msa0060350 | Msa0165910 | 0.826933 | 2.066318e-54 | -8.615850e-47 |
| Msa0092730 | Msa0165910 | 0.800995 | 1.109414e-48 | -8.615850e-47 |
| Msa0105210 | Msa0165910 | 0.826232 | 3.037668e-54 | -8.615850e-47 |
| Msa0135980 | Msa0165910 | 0.810116 | 1.352879e-50 | -8.615850e-47 |
| Msa0137600 | Msa0165910 | 0.802953 | 4.392696e-49 | -8.615850e-47 |
| Msa0141430 | Msa0165910 | 0.816516 | 5.311204e-52 | -8.615850e-47 |
| Msa0143970 | Msa0165910 | 0.837205 | 5.964345e-57 | -8.615850e-47 |
| Msa0143980 | Msa0165910 | 0.809823 | 1.563693e-50 | -8.615850e-47 |
| Msa0155110 | Msa0165910 | 0.804582 | 2.015950e-49 | -8.615850e-47 |
| Msa0165910 | Msa0181020 | 0.803000 | 4.294258e-49 | -8.615850e-47 |
| Msa0165910 | Msa0183610 | 0.831626 | 1.500306e-55 | -8.615850e-47 |
| Msa0165910 | Msa0183620 | 0.819545 | 1.097832e-52 | -8.615850e-47 |
| Msa0165910 | Msa0199730 | 0.810452 | 1.144599e-50 | -8.615850e-47 |
| Msa0165910 | Msa0206940 | 0.830585 | 2.703959e-55 | -8.615850e-47 |
| Msa0165910 | Msa0207000 | 0.818180 | 2.242047e-52 | -8.615850e-47 |
| Msa0165910 | Msa0208630 | 0.848367 | 6.413773e-60 | -8.615850e-47 |
| Msa0165910 | Msa0213080 | 0.805180 | 1.511514e-49 | -8.615850e-47 |
| Msa0165910 | Msa0239660 | 0.814670 | 1.368960e-51 | -8.615850e-47 |
| Msa0165910 | Msa0250520 | 0.803132 | 4.034001e-49 | -8.615850e-47 |
| Msa0165910 | Msa0265820 | 0.801746 | 7.784415e-49 | -8.615850e-47 |
| Msa0165910 | Msa0277640 | 0.811984 | 5.324376e-51 | -8.615850e-47 |
| Msa0165910 | Msa0296610 | 0.812034 | 5.194983e-51 | -8.615850e-47 |
| Msa0165910 | Msa0317260 | 0.801579 | 8.422402e-49 | -8.615850e-47 |
| Msa0165910 | Msa0318270 | 0.803780 | 2.961020e-49 | -8.615850e-47 |
| Msa0165910 | Msa0318310 | 0.802288 | 6.022951e-49 | -8.615850e-47 |
| Msa0165910 | Msa0323990 | 0.811233 | 7.756141e-51 | -8.615850e-47 |
| Msa0165910 | Msa0334980 | 0.819013 | 1.451118e-52 | -8.615850e-47 |
| Msa0165910 | Msa0339860 | 0.806621 | 7.525767e-50 | -8.615850e-47 |
| Msa0165910 | Msa0342200 | 0.811586 | 6.502043e-51 | -8.615850e-47 |
| Msa0165910 | Msa0350020 | 0.828335 | 9.517100e-55 | -8.615850e-47 |
| Msa0165910 | Msa0411560 | 0.801704 | 7.942760e-49 | -8.615850e-47 |
| Msa0165910 | Msa0413740 | 0.809867 | 1.530401e-50 | -8.615850e-47 |
| Msa0165910 | Msa0473490 | 0.801648 | 8.154715e-49 | -8.615850e-47 |
| Msa0165910 | Msa0480150 | 0.803993 | 2.673427e-49 | -8.615850e-47 |
| Msa0165910 | Msa0490300 | 0.835732 | 1.413497e-56 | -8.615850e-47 |
| Msa0165910 | Msa0505390 | 0.806689 | 7.281396e-50 | -8.615850e-47 |
| Msa0165910 | Msa0510960 | 0.830569 | 2.727843e-55 | -8.615850e-47 |
| Msa0165910 | Msa0512310 | 0.802077 | 6.655834e-49 | -8.615850e-47 |
| Msa0165910 | Msa0527590 | 0.805455 | 1.323760e-49 | -8.615850e-47 |
| Msa0165910 | Msa0527600 | 0.811193 | 7.911150e-51 | -8.615850e-47 |
| Msa0165910 | Msa0532840 | 0.808551 | 2.929450e-50 | -8.615850e-47 |
| Msa0165910 | Msa0533010 | 0.813120 | 3.006115e-51 | -8.615850e-47 |
| Msa0165910 | Msa0546380 | 0.828016 | 1.136387e-54 | -8.615850e-47 |
| Msa0165910 | Msa0549740 | 0.815747 | 7.890179e-52 | -8.615850e-47 |
| Msa0165910 | Msa0607200 | 0.804873 | 1.752519e-49 | -8.615850e-47 |
| Msa0165910 | Msa0614040 | 0.822606 | 2.165110e-53 | -8.615850e-47 |
| Msa0165910 | Msa0619330 | 0.812866 | 3.418023e-51 | -8.615850e-47 |
| Msa0165910 | Msa0621890 | 0.802370 | 5.793919e-49 | -8.615850e-47 |
| Msa0165910 | Msa0642650 | 0.819221 | 1.301376e-52 | -8.615850e-47 |
| Msa0165910 | Msa0657670 | 0.815234 | 1.025987e-51 | -8.615850e-47 |
| Msa0165910 | Msa0667970 | 0.825323 | 4.989941e-54 | -8.615850e-47 |
| Msa0165910 | Msa0681890 | 0.801224 | 9.961488e-49 | -8.615850e-47 |
| Msa0165910 | Msa0682400 | 0.811738 | 6.025636e-51 | -8.615850e-47 |
| Msa0165910 | Msa0690350 | 0.800978 | 1.118389e-48 | -8.615850e-47 |
| Msa0165910 | Msa0697540 | 0.813495 | 2.486652e-51 | -8.615850e-47 |
| Msa0165910 | Msa0709480 | 0.807679 | 4.493186e-50 | -8.615850e-47 |
| Msa0165910 | Msa0720270 | 0.802402 | 5.707616e-49 | -8.615850e-47 |
| Msa0165910 | Msa0730180 | 0.809852 | 1.541782e-50 | -8.615850e-47 |
| Msa0165910 | Msa0748930 | 0.802015 | 6.855998e-49 | -8.615850e-47 |
| Msa0165910 | Msa0760890 | 0.811508 | 6.758540e-51 | -8.615850e-47 |
| Msa0165910 | Msa0770430 | 0.822018 | 2.964415e-53 | -8.615850e-47 |
| Msa0165910 | Msa0790830 | 0.810690 | 1.016899e-50 | -8.615850e-47 |
| Msa0165910 | Msa0802210 | 0.810489 | 1.123729e-50 | -8.615850e-47 |
| Msa0165910 | Msa0811510 | 0.807183 | 5.724212e-50 | -8.615850e-47 |
| Msa0165910 | Msa0848360 | 0.806588 | 7.647709e-50 | -8.615850e-47 |
| Msa0165910 | Msa0851740 | 0.801142 | 1.035190e-48 | -8.615850e-47 |
| Msa0165910 | Msa0863250 | 0.803179 | 3.943665e-49 | -8.615850e-47 |
| Msa0165910 | Msa0890250 | 0.859559 | 3.805127e-63 | -8.615850e-47 |
| Msa0165910 | Msa0909710 | 0.828934 | 6.822558e-55 | -8.615850e-47 |
| Msa0165910 | Msa0910400 | 0.849736 | 2.670903e-60 | -8.615850e-47 |
| Msa0165910 | Msa0925160 | 0.846041 | 2.786698e-59 | -8.615850e-47 |
| Msa0165910 | Msa0937940 | 0.814258 | 1.688576e-51 | -8.615850e-47 |
| Msa0165910 | Msa0955260 | 0.826740 | 2.298034e-54 | -8.615850e-47 |
| Msa0165910 | Msa0969400 | 0.802875 | 4.558674e-49 | -8.615850e-47 |
| Msa0165910 | Msa0969570 | 0.827460 | 1.545672e-54 | -8.615850e-47 |
| Msa0165910 | Msa0969700 | 0.800192 | 1.617095e-48 | -8.615850e-47 |
| Msa0165910 | Msa0975080 | 0.806331 | 8.665503e-50 | -8.615850e-47 |
| Msa0165910 | Msa0980440 | 0.800173 | 1.631641e-48 | -8.615850e-47 |
| Msa0165910 | Msa0981740 | 0.823335 | 1.464425e-53 | -8.615850e-47 |
| Msa0165910 | Msa1000910 | 0.821188 | 4.611831e-53 | -8.615850e-47 |
| Msa0165910 | Msa1029320 | 0.801697 | 7.969057e-49 | -8.615850e-47 |
| Msa0165910 | Msa1044340 | 0.810348 | 1.205605e-50 | -8.615850e-47 |
| Msa0165910 | Msa1080460 | 0.828643 | 8.019197e-55 | -8.615850e-47 |
| Msa0165910 | Msa1080620 | 0.811154 | 8.070222e-51 | -8.615850e-47 |
| Msa0165910 | Msa1081700 | 0.801331 | 9.470974e-49 | -8.615850e-47 |
| Msa0165910 | Msa1097380 | 0.806539 | 7.831480e-50 | -8.615850e-47 |
| Msa0165910 | Msa1117690 | 0.800014 | 1.758179e-48 | -8.615850e-47 |
| Msa0165910 | Msa1125780 | 0.816429 | 5.554565e-52 | -8.615850e-47 |
| Msa0165910 | Msa1125950 | 0.818146 | 2.282710e-52 | -8.615850e-47 |
| Msa0165910 | Msa1149760 | 0.823249 | 1.533075e-53 | -8.615850e-47 |
| Msa0165910 | Msa1159100 | 0.806418 | 8.307079e-50 | -8.615850e-47 |
| Msa0165910 | Msa1166970 | 0.821674 | 3.560548e-53 | -8.615850e-47 |
| Msa0165910 | Msa1167000 | 0.812526 | 4.055114e-51 | -8.615850e-47 |
| Msa0165910 | Msa1171340 | 0.813714 | 2.226026e-51 | -8.615850e-47 |
| Msa0165910 | Msa1183390 | 0.800178 | 1.627875e-48 | -8.615850e-47 |
| Msa0165910 | Msa1184580 | 0.841266 | 5.274500e-58 | -8.615850e-47 |
| Msa0165910 | Msa1184730 | 0.816731 | 4.754701e-52 | -8.615850e-47 |
| Msa0165910 | Msa1190910 | 0.807265 | 5.499171e-50 | -8.615850e-47 |
| Msa0165910 | Msa1197110 | 0.824133 | 9.518372e-54 | -8.615850e-47 |
| Msa0165910 | Msa1222580 | 0.808772 | 2.628489e-50 | -8.615850e-47 |
| Msa0165910 | Msa1224670 | 0.808598 | 2.863516e-50 | -8.615850e-47 |
| Msa0165910 | Msa1226600 | 0.813131 | 2.988870e-51 | -8.615850e-47 |
| Msa0165910 | Msa1238480 | 0.804880 | 1.746500e-49 | -8.615850e-47 |
| Msa0165910 | Msa1238700 | 0.806711 | 7.202299e-50 | -8.615850e-47 |
| Msa0165910 | Msa1262310 | 0.817750 | 2.805156e-52 | -8.615850e-47 |
| Msa0165910 | Msa1265960 | 0.814336 | 1.622912e-51 | -8.615850e-47 |
| Msa0165910 | Msa1280120 | 0.805303 | 1.424706e-49 | -8.615850e-47 |
| Msa0165910 | Msa1280130 | 0.840911 | 6.535508e-58 | -8.615850e-47 |
| Msa0165910 | Msa1302150 | 0.803245 | 3.822739e-49 | -8.615850e-47 |
| Msa0165910 | Msa1310110 | 0.801623 | 8.252332e-49 | -8.615850e-47 |
| Msa0165910 | Msa1326000 | 0.816201 | 6.248123e-52 | -8.615850e-47 |
| Msa0165910 | Msa1385620 | 0.819131 | 1.364455e-52 | -8.615850e-47 |
| Msa0165910 | Msa1385900 | 0.801779 | 7.663910e-49 | -8.615850e-47 |
| Msa0165910 | Msa1398480 | 0.802127 | 6.500486e-49 | -8.615850e-47 |
| Msa0165910 | Msa1412520 | 0.812206 | 4.764036e-51 | -8.615850e-47 |
| Msa0165910 | Msa1418200 | 0.838294 | 3.133263e-57 | -8.615850e-47 |
| Msa0165910 | Msa1430270 | 0.805225 | 1.479012e-49 | -8.615850e-47 |
| Msa0165910 | Msa1430760 | 0.808060 | 3.728788e-50 | -8.615850e-47 |
| Msa0165910 | Msa1431000 | 0.807536 | 4.818905e-50 | -8.615850e-47 |
| Msa0165910 | Msa1440220 | 0.802097 | 6.594598e-49 | -8.615850e-47 |
| Msa0165910 | Msa1447230 | 0.818882 | 1.554395e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165910 | MtrunA17_Chr1g0180761 | 74.477 | 239 | 6 | 2 | 1 | 184 | 1 | 239 | 7.21e-119 | 336 |
| Msa0165910 | MtrunA17_Chr5g0415351 | 68.696 | 115 | 7 | 2 | 42 | 131 | 12 | 122 | 2.58e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165910 | AT5G52970.2 | 51.397 | 179 | 34 | 2 | 59 | 184 | 45 | 223 | 3.43e-52 | 167 |
| Msa0165910 | AT5G52970.1 | 51.397 | 179 | 34 | 2 | 59 | 184 | 45 | 223 | 3.43e-52 | 167 |
Find 48 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATATTATGCAGAATTTA+AGG | 0.135967 | 1_4:-46791494 | Msa0165910:three_prime_UTR |
| CTCTCACTTTGTTTATTATT+TGG | 0.163402 | 1_4:-46793531 | Msa0165910:CDS |
| CTATGTTAGTAGTACATATT+AGG | 0.171521 | 1_4:-46791458 | Msa0165910:three_prime_UTR |
| GTTTGGCTGTCAAAGATTTC+TGG | 0.192590 | 1_4:-46792474 | Msa0165910:CDS |
| TAACAAACAAGTTTCCAAAA+AGG | 0.279430 | 1_4:-46793784 | Msa0165910:five_prime_UTR |
| AGGATTTAAGTTGAGAGTTT+TGG | 0.282622 | 1_4:-46792614 | Msa0165910:CDS |
| GATCATAAACCTGGAGTATC+AGG | 0.324214 | 1_4:+46792580 | None:intergenic |
| CTGGAGTATCAGGATAGTTC+TGG | 0.327962 | 1_4:+46792590 | None:intergenic |
| CTTAGTGTTTCCTTACTCAT+TGG | 0.330550 | 1_4:-46791269 | Msa0165910:three_prime_UTR |
| CAAACGATAGCGTCTTAGTA+TGG | 0.350379 | 1_4:-46791353 | Msa0165910:three_prime_UTR |
| TTCACCTCAGAACAATTATT+AGG | 0.393607 | 1_4:+46791568 | None:intergenic |
| TATGTTAGTAGTACATATTA+GGG | 0.395613 | 1_4:-46791457 | Msa0165910:three_prime_UTR |
| TCACTTTGTTTATTATTTGG+AGG | 0.399730 | 1_4:-46793528 | Msa0165910:intron |
| ATGGAATCTGCTGTTTAAAC+TGG | 0.403176 | 1_4:-46791334 | Msa0165910:three_prime_UTR |
| CTTAATACATCCAATGAGTA+AGG | 0.405947 | 1_4:+46791259 | None:intergenic |
| TTCTAGTTGCTTGAGAGAAC+CGG | 0.421385 | 1_4:-46791596 | Msa0165910:CDS |
| GCTGATCTTGAAAAGGATAC+AGG | 0.427812 | 1_4:-46792634 | Msa0165910:CDS |
| GTGATATATATAGTTTCAAC+AGG | 0.430906 | 1_4:+46791191 | None:intergenic |
| GTCTATTGAGTCAGCAGTTA+TGG | 0.442710 | 1_4:-46791623 | Msa0165910:CDS |
| TTTGTTGCTGATCCCACGTT+TGG | 0.459599 | 1_4:-46792427 | Msa0165910:intron |
| GAGTGAAGAAATGATAGAAT+TGG | 0.472998 | 1_4:+46793599 | None:intergenic |
| CATAGATTCTTTACCAAACG+TGG | 0.488249 | 1_4:+46792414 | None:intergenic |
| GAAGACGAGATGAGTGTTGT+GGG | 0.493439 | 1_4:+46793688 | None:intergenic |
| AATGATGCAACTTGTCCTAC+TGG | 0.496002 | 1_4:-46791228 | Msa0165910:three_prime_UTR |
| TGGAGTATCAGGATAGTTCT+GGG | 0.496693 | 1_4:+46792591 | None:intergenic |
| GTTGCTTGAGAGAACCGGTT+GGG | 0.501988 | 1_4:-46791591 | Msa0165910:CDS |
| GAACAATTATTAGGCCCAAC+CGG | 0.504665 | 1_4:+46791577 | None:intergenic |
| AATTAAAATACATTGAATCA+TGG | 0.509206 | 1_4:+46791432 | None:intergenic |
| AGAGATTGCTGATCTTGAAA+AGG | 0.515456 | 1_4:-46792641 | Msa0165910:CDS |
| GAACTGAACATAACGTATGA+AGG | 0.522464 | 1_4:-46791542 | Msa0165910:three_prime_UTR |
| GTTAGAGATATGAATGATGA+TGG | 0.525806 | 1_4:+46793714 | None:intergenic |
| CCAGATAGAGCAAAATGTAA+AGG | 0.537019 | 1_4:+46793558 | None:intergenic |
| GCTGAGGCTGCTACTAAAGC+TGG | 0.540195 | 1_4:-46793411 | Msa0165910:CDS |
| CAGAACTATCCTGATACTCC+AGG | 0.561162 | 1_4:-46792589 | Msa0165910:intron |
| TGAAGACGAGATGAGTGTTG+TGG | 0.583044 | 1_4:+46793687 | None:intergenic |
| TGTTGTTGTGTGATGAAGAG+AGG | 0.593155 | 1_4:+46793631 | None:intergenic |
| CAAATAATAAACAAAGTGAG+AGG | 0.595591 | 1_4:+46793532 | None:intergenic |
| GAGTATTCATCTTAAGCTAG+AGG | 0.597363 | 1_4:-46791309 | Msa0165910:three_prime_UTR |
| TTGTGAAGAAGATGATGAAG+AGG | 0.620282 | 1_4:+46793738 | None:intergenic |
| AAATAATAAACAAAGTGAGA+GGG | 0.624981 | 1_4:+46793533 | None:intergenic |
| ATAGATTCTTTACCAAACGT+GGG | 0.627257 | 1_4:+46792415 | None:intergenic |
| AGTTGCTTGAGAGAACCGGT+TGG | 0.629011 | 1_4:-46791592 | Msa0165910:CDS |
| CAATGAGTAAGGAAACACTA+AGG | 0.629739 | 1_4:+46791270 | None:intergenic |
| TGGGCCTAATAATTGTTCTG+AGG | 0.630654 | 1_4:-46791572 | Msa0165910:CDS |
| TGTTAGTAGTACATATTAGG+GGG | 0.656630 | 1_4:-46791455 | Msa0165910:three_prime_UTR |
| TGAACATAACGTATGAAGGA+CGG | 0.657105 | 1_4:-46791538 | Msa0165910:three_prime_UTR |
| ATGTTAGTAGTACATATTAG+GGG | 0.657210 | 1_4:-46791456 | Msa0165910:three_prime_UTR |
| GGTAGGAGCTGAAATTGCTG+AGG | 0.669051 | 1_4:-46793427 | Msa0165910:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAATTCTTGAATT+TGG | - | chr1_4:46791518-46791537 | Msa0165910:three_prime_UTR | 15.0% |
| !! | TATTAAAAACTATTATGACA+CGG | + | chr1_4:46792116-46792135 | None:intergenic | 15.0% |
| !! | AAATAAGATGAACTAATTTA+AGG | + | chr1_4:46792709-46792728 | None:intergenic | 15.0% |
| !! | AATATATTGAATTTCAATGT+TGG | - | chr1_4:46792938-46792957 | Msa0165910:intron | 15.0% |
| !!! | TAATGTGTCTATTATTTTAT+TGG | - | chr1_4:46793256-46793275 | Msa0165910:intron | 15.0% |
| !! | ATTATATTATGCAGAATTTA+AGG | - | chr1_4:46793472-46793491 | Msa0165910:intron | 15.0% |
| !! | AATTAAAATACATTGAATCA+TGG | + | chr1_4:46793537-46793556 | None:intergenic | 15.0% |
| !! | AAATAATAAACAAAGTGAGA+GGG | + | chr1_4:46791436-46791455 | None:intergenic | 20.0% |
| !!! | TTTAAGTTATTTATCCAAAC+AGG | + | chr1_4:46791667-46791686 | None:intergenic | 20.0% |
| !! | ATAATGTACTATTATTATGC+AGG | - | chr1_4:46792470-46792489 | Msa0165910:CDS | 20.0% |
| !! | TAATCATAATGATCTGATAA+TGG | - | chr1_4:46793289-46793308 | Msa0165910:intron | 20.0% |
| !! | TATGTTAGTAGTACATATTA+GGG | - | chr1_4:46793509-46793528 | Msa0165910:intron | 20.0% |
| ! | AACAAACAAGTTTCCAAAAA+GGG | - | chr1_4:46791183-46791202 | Msa0165910:three_prime_UTR | 25.0% |
| ! | CAAATAATAAACAAAGTGAG+AGG | + | chr1_4:46791437-46791456 | None:intergenic | 25.0% |
| !! | CTCTCACTTTGTTTATTATT+TGG | - | chr1_4:46791435-46791454 | Msa0165910:three_prime_UTR | 25.0% |
| !! | TCACTTTGTTTATTATTTGG+AGG | - | chr1_4:46791438-46791457 | Msa0165910:three_prime_UTR | 25.0% |
| ! | AATCAAGTTTGAATAATGAG+TGG | + | chr1_4:46791466-46791485 | None:intergenic | 25.0% |
| ! | TGAAAATTCTTGAATTTGGT+AGG | - | chr1_4:46791522-46791541 | Msa0165910:three_prime_UTR | 25.0% |
| ! | ATAAGCTGAAAACAAACTTA+TGG | - | chr1_4:46791815-46791834 | Msa0165910:intron | 25.0% |
| ! | GTAAACATTTATGAAAGGTT+TGG | + | chr1_4:46791871-46791890 | None:intergenic | 25.0% |
| ! | TAAATTGATCATTCATGTTC+AGG | - | chr1_4:46792286-46792305 | Msa0165910:intron | 25.0% |
| ! | TACCGATATAGGTAATATTA+AGG | - | chr1_4:46792896-46792915 | Msa0165910:intron | 25.0% |
| ! | CTCCTTAATATTACCTATAT+CGG | + | chr1_4:46792901-46792920 | None:intergenic | 25.0% |
| ! | TTGAAATTCAATATATTCCC+TGG | + | chr1_4:46792935-46792954 | None:intergenic | 25.0% |
| ! | CATACAACAAACAATATCAA+TGG | - | chr1_4:46793103-46793122 | Msa0165910:intron | 25.0% |
| ! | TAATAGACACATTAAAATGC+AGG | + | chr1_4:46793250-46793269 | None:intergenic | 25.0% |
| ! | CTATGTTAGTAGTACATATT+AGG | - | chr1_4:46793508-46793527 | Msa0165910:intron | 25.0% |
| ! | ATGTTAGTAGTACATATTAG+GGG | - | chr1_4:46793510-46793529 | Msa0165910:intron | 25.0% |
| ! | GTGATATATATAGTTTCAAC+AGG | + | chr1_4:46793778-46793797 | None:intergenic | 25.0% |
| GTTAGAGATATGAATGATGA+TGG | + | chr1_4:46791255-46791274 | None:intergenic | 30.0% | |
| GAGTGAAGAAATGATAGAAT+TGG | + | chr1_4:46791370-46791389 | None:intergenic | 30.0% | |
| !!! | TAAAGGTTTTGAGTGAATGT+TGG | + | chr1_4:46791394-46791413 | None:intergenic | 30.0% |
| ATGACTGTACTAAACTCTTT+AGG | + | chr1_4:46791603-46791622 | None:intergenic | 30.0% | |
| ACCTTTCATAAATGTTTACG+CGG | - | chr1_4:46791872-46791891 | Msa0165910:intron | 30.0% | |
| ACCTTTCATAAATGTTTACG+CGG | - | chr1_4:46791872-46791891 | Msa0165910:intron | 30.0% | |
| ! | CGACAGAAATGTAAAGATTT+TGG | + | chr1_4:46791985-46792004 | None:intergenic | 30.0% |
| TTTACATTTCTGTCGCATTT+GGG | - | chr1_4:46791990-46792009 | Msa0165910:intron | 30.0% | |
| !!! | AGGATTTAAGTTGAGAGTTT+TGG | - | chr1_4:46792352-46792371 | Msa0165910:intron | 30.0% |
| ACGATATTCGCACAATTTAA+GGG | - | chr1_4:46792409-46792428 | Msa0165910:intron | 30.0% | |
| GTACTATTATTATGCAGGTT+TGG | - | chr1_4:46792475-46792494 | Msa0165910:CDS | 30.0% | |
| ATAGATTCTTTACCAAACGT+GGG | + | chr1_4:46792554-46792573 | None:intergenic | 30.0% | |
| TTAAGGCTAAAAACCTTGTT+TGG | + | chr1_4:46792692-46792711 | None:intergenic | 30.0% | |
| !!! | AAGGTAAGCTCTACTTTTTT+TGG | - | chr1_4:46793043-46793062 | Msa0165910:intron | 30.0% |
| !! | AAATAAGTTGCTAGCTTTAG+AGG | + | chr1_4:46793078-46793097 | None:intergenic | 30.0% |
| GTTTAATACCAATCGAAACA+GGG | - | chr1_4:46793311-46793330 | Msa0165910:intron | 30.0% | |
| TTCACCTCAGAACAATTATT+AGG | + | chr1_4:46793401-46793420 | None:intergenic | 30.0% | |
| TGTTAGTAGTACATATTAGG+GGG | - | chr1_4:46793511-46793530 | Msa0165910:intron | 30.0% | |
| CTTAATACATCCAATGAGTA+AGG | + | chr1_4:46793710-46793729 | None:intergenic | 30.0% | |
| AACAAGTTTCCAAAAAGGGA+AGG | - | chr1_4:46791187-46791206 | Msa0165910:three_prime_UTR | 35.0% | |
| TTGTGAAGAAGATGATGAAG+AGG | + | chr1_4:46791231-46791250 | None:intergenic | 35.0% | |
| CCAGATAGAGCAAAATGTAA+AGG | + | chr1_4:46791411-46791430 | None:intergenic | 35.0% | |
| ! | CCTTTACATTTTGCTCTATC+TGG | - | chr1_4:46791408-46791427 | Msa0165910:three_prime_UTR | 35.0% |
| ! | AACTCTTTAGGAAGCAATTC+TGG | + | chr1_4:46791591-46791610 | None:intergenic | 35.0% |
| ACAGGTATTAGAATCCTGTT+TGG | - | chr1_4:46791650-46791669 | Msa0165910:intron | 35.0% | |
| ! | AACTGTTTTCATAAGCTACC+TGG | - | chr1_4:46791779-46791798 | Msa0165910:intron | 35.0% |
| ACCGCGTAAACATTTATGAA+AGG | + | chr1_4:46791876-46791895 | None:intergenic | 35.0% | |
| ACCGCGTAAACATTTATGAA+AGG | + | chr1_4:46791876-46791895 | None:intergenic | 35.0% | |
| CTTTACATTTCTGTCGCATT+TGG | - | chr1_4:46791989-46792008 | Msa0165910:intron | 35.0% | |
| ATGCTTTCATTCATCGTGTA+TGG | - | chr1_4:46792035-46792054 | Msa0165910:intron | 35.0% | |
| AACATTCGAAGGAATGATTC+TGG | + | chr1_4:46792217-46792236 | None:intergenic | 35.0% | |
| AGGTTTCAAACAACATTCGA+AGG | + | chr1_4:46792228-46792247 | None:intergenic | 35.0% | |
| AGAGATTGCTGATCTTGAAA+AGG | - | chr1_4:46792325-46792344 | Msa0165910:intron | 35.0% | |
| GAATATCGTGATCATAAACC+TGG | + | chr1_4:46792398-46792417 | None:intergenic | 35.0% | |
| CACGATATTCGCACAATTTA+AGG | - | chr1_4:46792408-46792427 | Msa0165910:intron | 35.0% | |
| ! | ACAATTTAAGGGTTGAGTTG+AGG | - | chr1_4:46792420-46792439 | Msa0165910:intron | 35.0% |
| CATAGATTCTTTACCAAACG+TGG | + | chr1_4:46792555-46792574 | None:intergenic | 35.0% | |
| AAGAAGTGGAAATAACAGAG+AGG | + | chr1_4:46792861-46792880 | None:intergenic | 35.0% | |
| TTCCACTTCTTTCTTCTTGA+TGG | - | chr1_4:46792870-46792889 | Msa0165910:intron | 35.0% | |
| ATCCATCAAGAAGAAAGAAG+TGG | + | chr1_4:46792875-46792894 | None:intergenic | 35.0% | |
| !!! | TAAGGAGTTTTTTGTTGACC+AGG | - | chr1_4:46792914-46792933 | Msa0165910:intron | 35.0% |
| !!! | AAGGAGTTTTTTGTTGACCA+GGG | - | chr1_4:46792915-46792934 | Msa0165910:intron | 35.0% |
| ! | AGTACGGGAACATTTTCTAT+TGG | - | chr1_4:46793014-46793033 | Msa0165910:intron | 35.0% |
| TGCTCATGCATATCAAATCA+TGG | - | chr1_4:46793156-46793175 | Msa0165910:intron | 35.0% | |
| GGTTTAATACCAATCGAAAC+AGG | - | chr1_4:46793310-46793329 | Msa0165910:intron | 35.0% | |
| GAACTGAACATAACGTATGA+AGG | - | chr1_4:46793424-46793443 | Msa0165910:CDS | 35.0% | |
| TGAACATAACGTATGAAGGA+CGG | - | chr1_4:46793428-46793447 | Msa0165910:intron | 35.0% | |
| ! | ATGGAATCTGCTGTTTAAAC+TGG | - | chr1_4:46793632-46793651 | Msa0165910:CDS | 35.0% |
| GAGTATTCATCTTAAGCTAG+AGG | - | chr1_4:46793657-46793676 | Msa0165910:CDS | 35.0% | |
| CAATGAGTAAGGAAACACTA+AGG | + | chr1_4:46793699-46793718 | None:intergenic | 35.0% | |
| CTTAGTGTTTCCTTACTCAT+TGG | - | chr1_4:46793697-46793716 | Msa0165910:CDS | 35.0% | |
| GTTATAGACAAAAAGCCAGT+AGG | + | chr1_4:46793756-46793775 | None:intergenic | 35.0% | |
| ! | CATCATTGTCCTTCCCTTTT+TGG | + | chr1_4:46791199-46791218 | None:intergenic | 40.0% |
| CAAAAAGGGAAGGACAATGA+TGG | - | chr1_4:46791197-46791216 | Msa0165910:three_prime_UTR | 40.0% | |
| TGTTGTTGTGTGATGAAGAG+AGG | + | chr1_4:46791338-46791357 | None:intergenic | 40.0% | |
| AGTACAGTCATTGATGTTGC+TGG | - | chr1_4:46791612-46791631 | Msa0165910:CDS | 40.0% | |
| GGATTCTAATACCTGTCCAT+CGG | + | chr1_4:46791646-46791665 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | + | chr1_4:46791800-46791819 | None:intergenic | 40.0% | |
| GGCGATTCTCTGTAATATCA+AGG | - | chr1_4:46792179-46792198 | Msa0165910:intron | 40.0% | |
| GCTGATCTTGAAAAGGATAC+AGG | - | chr1_4:46792332-46792351 | Msa0165910:intron | 40.0% | |
| ! | TGGAGTATCAGGATAGTTCT+GGG | + | chr1_4:46792378-46792397 | None:intergenic | 40.0% |
| ! | GATCATAAACCTGGAGTATC+AGG | + | chr1_4:46792389-46792408 | None:intergenic | 40.0% |
| GTTTGGCTGTCAAAGATTTC+TGG | - | chr1_4:46792492-46792511 | Msa0165910:intron | 40.0% | |
| ! | AGAGTTTTTGCCTCCAAACA+AGG | - | chr1_4:46792676-46792695 | Msa0165910:intron | 40.0% |
| ! | AGGCTAAAAACCTTGTTTGG+AGG | + | chr1_4:46792689-46792708 | None:intergenic | 40.0% |
| GAAGAACAACAGGAACAGAA+AGG | + | chr1_4:46792839-46792858 | None:intergenic | 40.0% | |
| TAACAGAGAGGAAGAACAAC+AGG | + | chr1_4:46792849-46792868 | None:intergenic | 40.0% | |
| ! | CTTGATGGATCTACCGATAT+AGG | - | chr1_4:46792885-46792904 | Msa0165910:intron | 40.0% |
| ! | ACGGGAACATTTTCTATTGG+AGG | - | chr1_4:46793017-46793036 | Msa0165910:intron | 40.0% |
| ! | CGGGAACATTTTCTATTGGA+GGG | - | chr1_4:46793018-46793037 | Msa0165910:intron | 40.0% |
| ! | CATTTTCTATTGGAGGGAGA+AGG | - | chr1_4:46793024-46793043 | Msa0165910:intron | 40.0% |
| ACTCTATTCACTTCAGACGA+AGG | - | chr1_4:46793216-46793235 | Msa0165910:intron | 40.0% | |
| GTCTATTGAGTCAGCAGTTA+TGG | - | chr1_4:46793343-46793362 | Msa0165910:intron | 40.0% | |
| ! | TTCTAGTTGCTTGAGAGAAC+CGG | - | chr1_4:46793370-46793389 | Msa0165910:intron | 40.0% |
| GAACAATTATTAGGCCCAAC+CGG | + | chr1_4:46793392-46793411 | None:intergenic | 40.0% | |
| TGGGCCTAATAATTGTTCTG+AGG | - | chr1_4:46793394-46793413 | Msa0165910:intron | 40.0% | |
| CAAACGATAGCGTCTTAGTA+TGG | - | chr1_4:46793613-46793632 | Msa0165910:CDS | 40.0% | |
| AATGATGCAACTTGTCCTAC+TGG | - | chr1_4:46793738-46793757 | Msa0165910:CDS | 40.0% | |
| ! | GAAGACGAGATGAGTGTTGT+GGG | + | chr1_4:46791281-46791300 | None:intergenic | 45.0% |
| ! | TGAAGACGAGATGAGTGTTG+TGG | + | chr1_4:46791282-46791301 | None:intergenic | 45.0% |
| TAAGCTACCTGGAGAGCTTA+TGG | - | chr1_4:46791790-46791809 | Msa0165910:intron | 45.0% | |
| CAGAGAATCGCCGTCAAATA+CGG | + | chr1_4:46792171-46792190 | None:intergenic | 45.0% | |
| TAATATCAAGGATCGCGACG+CGG | - | chr1_4:46792191-46792210 | Msa0165910:intron | 45.0% | |
| !! | CAAGAGCATCAATCATCAGC+AGG | + | chr1_4:46792248-46792267 | None:intergenic | 45.0% |
| ! | CTGGAGTATCAGGATAGTTC+TGG | + | chr1_4:46792379-46792398 | None:intergenic | 45.0% |
| CAGAACTATCCTGATACTCC+AGG | - | chr1_4:46792377-46792396 | Msa0165910:intron | 45.0% | |
| TTTGTTGCTGATCCCACGTT+TGG | - | chr1_4:46792539-46792558 | Msa0165910:intron | 45.0% | |
| ACAACAGGAACAGAAAGGTG+TGG | + | chr1_4:46792834-46792853 | None:intergenic | 45.0% | |
| !! | TGTTGGTGCTACCGTTGATT+TGG | - | chr1_4:46792955-46792974 | Msa0165910:intron | 45.0% |
| ACGTGGGATGTCCAAATCAA+CGG | + | chr1_4:46792969-46792988 | None:intergenic | 45.0% | |
| CATCTTCACCCTGTTTCGAT+TGG | + | chr1_4:46793322-46793341 | None:intergenic | 45.0% | |
| ! | AGGTGACACGACAGCGTTTT+TGG | + | chr1_4:46791318-46791337 | None:intergenic | 50.0% |
| GGTAGGAGCTGAAATTGCTG+AGG | - | chr1_4:46791539-46791558 | Msa0165910:three_prime_UTR | 50.0% | |
| CTAATACCTGTCCATCGGAG+AGG | + | chr1_4:46791641-46791660 | None:intergenic | 50.0% | |
| TGGACATCCCACGTAGTTTC+TGG | - | chr1_4:46792975-46792994 | Msa0165910:intron | 50.0% | |
| AGCGACTCCAGAAACTACGT+GGG | + | chr1_4:46792985-46793004 | None:intergenic | 50.0% | |
| AAGCGACTCCAGAAACTACG+TGG | + | chr1_4:46792986-46793005 | None:intergenic | 50.0% | |
| !! | ACGTAGTTTCTGGAGTCGCT+TGG | - | chr1_4:46792985-46793004 | Msa0165910:intron | 50.0% |
| AGTTGCTTGAGAGAACCGGT+TGG | - | chr1_4:46793374-46793393 | Msa0165910:intron | 50.0% | |
| GTTGCTTGAGAGAACCGGTT+GGG | - | chr1_4:46793375-46793394 | Msa0165910:intron | 50.0% | |
| GCTGAGGCTGCTACTAAAGC+TGG | - | chr1_4:46791555-46791574 | Msa0165910:exon | 55.0% | |
| GTTGCTGGATTCCTCTCCGA+TGG | - | chr1_4:46791627-46791646 | Msa0165910:CDS | 55.0% | |
| TGGATTCCTCTCCGATGGAC+AGG | - | chr1_4:46791632-46791651 | Msa0165910:CDS | 55.0% | |
| GTGCAATGTGACTGCGATCG+AGG | - | chr1_4:46792145-46792164 | Msa0165910:intron | 55.0% | |
| GCGATCGAGGCCGTATTTGA+CGG | - | chr1_4:46792158-46792177 | Msa0165910:intron | 55.0% | |
| !! | AGTTTCTGGAGTCGCTTGGC+AGG | - | chr1_4:46792989-46793008 | Msa0165910:intron | 55.0% |
| AGTCGCTTGGCAGGCAAGTA+CGG | - | chr1_4:46792998-46793017 | Msa0165910:intron | 55.0% | |
| GTCGCTTGGCAGGCAAGTAC+GGG | - | chr1_4:46792999-46793018 | Msa0165910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 46791183 | 46793805 | 46791183 | ID=Msa0165910;Name=Msa0165910 |
| chr1_4 | mRNA | 46791183 | 46793805 | 46791183 | ID=Msa0165910-mRNA-1;Parent=Msa0165910;Name=Msa0165910-mRNA-1;_AED=0.15;_eAED=0.15;_QI=30|0.6|0.66|1|0.8|0.83|6|381|184 |
| chr1_4 | exon | 46791183 | 46791656 | 46791183 | ID=Msa0165910-mRNA-1:exon:13513;Parent=Msa0165910-mRNA-1 |
| chr1_4 | exon | 46792033 | 46792052 | 46792033 | ID=Msa0165910-mRNA-1:exon:13512;Parent=Msa0165910-mRNA-1 |
| chr1_4 | exon | 46792428 | 46792496 | 46792428 | ID=Msa0165910-mRNA-1:exon:13511;Parent=Msa0165910-mRNA-1 |
| chr1_4 | exon | 46792590 | 46792680 | 46792590 | ID=Msa0165910-mRNA-1:exon:13510;Parent=Msa0165910-mRNA-1 |
| chr1_4 | exon | 46793410 | 46793444 | 46793410 | ID=Msa0165910-mRNA-1:exon:13509;Parent=Msa0165910-mRNA-1 |
| chr1_4 | exon | 46793529 | 46793805 | 46793529 | ID=Msa0165910-mRNA-1:exon:13508;Parent=Msa0165910-mRNA-1 |
| chr1_4 | five_prime_UTR | 46793776 | 46793805 | 46793776 | ID=Msa0165910-mRNA-1:five_prime_utr;Parent=Msa0165910-mRNA-1 |
| chr1_4 | CDS | 46793529 | 46793775 | 46793529 | ID=Msa0165910-mRNA-1:cds;Parent=Msa0165910-mRNA-1 |
| chr1_4 | CDS | 46793410 | 46793444 | 46793410 | ID=Msa0165910-mRNA-1:cds;Parent=Msa0165910-mRNA-1 |
| chr1_4 | CDS | 46792590 | 46792680 | 46792590 | ID=Msa0165910-mRNA-1:cds;Parent=Msa0165910-mRNA-1 |
| chr1_4 | CDS | 46792428 | 46792496 | 46792428 | ID=Msa0165910-mRNA-1:cds;Parent=Msa0165910-mRNA-1 |
| chr1_4 | CDS | 46792033 | 46792052 | 46792033 | ID=Msa0165910-mRNA-1:cds;Parent=Msa0165910-mRNA-1 |
| chr1_4 | CDS | 46791564 | 46791656 | 46791564 | ID=Msa0165910-mRNA-1:cds;Parent=Msa0165910-mRNA-1 |
| chr1_4 | three_prime_UTR | 46791183 | 46791563 | 46791183 | ID=Msa0165910-mRNA-1:three_prime_utr;Parent=Msa0165910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
