AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0248560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0248560 MtrunA17_Chr2g0303671 92.880 309 22 0 1 309 1 309 0.0 595
Msa0248560 MtrunA17_Chr5g0405451 44.712 208 114 1 97 304 219 425 3.56e-55 185
Msa0248560 MtrunA17_Chr5g0406201 48.235 170 88 0 138 307 291 460 1.17e-52 179
Msa0248560 MtrunA17_Chr5g0418551 36.232 138 88 0 147 284 89 226 1.40e-21 91.7
Msa0248560 MtrunA17_Chr5g0418551 34.454 119 75 3 178 294 87 204 6.27e-15 73.2
Msa0248560 MtrunA17_Chr3g0127131 39.091 110 61 3 193 298 246 353 1.54e-14 73.2
Msa0248560 MtrunA17_Chr6g0461061 28.652 178 124 3 126 302 189 364 1.25e-12 68.2
Msa0248560 MtrunA17_Chr5g0409271 29.139 151 104 2 139 288 4 152 8.39e-12 64.3
Msa0248560 MtrunA17_Chr1g0211231 26.374 182 130 2 102 279 14 195 1.39e-11 65.1
Msa0248560 MtrunA17_Chr2g0328031 30.719 153 93 2 132 271 30 182 1.83e-11 64.3
Msa0248560 MtrunA17_Chr1g0180301 34.167 120 72 1 174 286 64 183 2.09e-11 62.4
Msa0248560 MtrunA17_Chr8g0361891 31.481 108 74 0 164 271 245 352 2.40e-11 63.9
Msa0248560 MtrunA17_Chr4g0064931 28.177 181 123 3 105 284 33 207 4.98e-11 63.5
Msa0248560 MtrunA17_Chr5g0409081 30.469 128 83 2 181 302 29 156 5.63e-11 60.5
Msa0248560 MtrunA17_Chr1g0211241 31.667 120 78 2 167 282 221 340 7.65e-11 62.8
Msa0248560 MtrunA17_Chr1g0196261 28.662 157 89 3 136 270 274 429 9.27e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0248560 AT5G40160.1 57.246 276 108 2 40 307 38 311 2.80e-106 312
Msa0248560 AT5G40160.2 54.962 262 104 3 40 293 38 293 8.19e-90 270
Msa0248560 AT5G66055.1 44.221 199 108 2 111 307 222 419 4.05e-51 174
Msa0248560 AT5G66055.2 42.446 139 77 2 111 247 222 359 6.14e-28 111
Msa0248560 AT2G03430.1 34.783 138 90 0 147 284 82 219 2.82e-18 82.8
Msa0248560 AT2G03430.1 28.814 177 119 4 130 301 29 203 5.30e-12 65.1
Msa0248560 AT2G25600.1 42.857 84 48 0 194 277 557 640 1.44e-13 71.6
Msa0248560 AT4G27780.1 37.113 97 58 1 193 286 242 338 5.33e-13 69.3
Msa0248560 AT5G53470.1 36.082 97 59 1 193 286 227 323 2.07e-12 67.4
Msa0248560 AT2G14255.1 32.624 141 92 2 150 287 93 233 3.56e-12 67.4
Msa0248560 AT5G13300.1 38.889 90 53 1 200 287 713 802 1.82e-11 65.5
Msa0248560 AT5G20350.1 28.649 185 123 4 102 284 25 202 3.96e-11 64.3
Msa0248560 AT3G09890.1 35.514 107 62 1 183 282 75 181 5.72e-11 61.6

Find 81 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATCTGCACTACGTATT+TGG 0.131214 2_2:-32713969 None:intergenic
ACAGAATATAACTCCTAATT+TGG 0.193363 2_2:+32712304 Msa0248560:CDS
TTCTACCACTAACTCCAAAT+TGG 0.221787 2_2:+32711303 Msa0248560:CDS
ATATGTTATGTCCTTCTAAT+TGG 0.231999 2_2:+32713801 Msa0248560:three_prime_UTR
TGCAGTATTTCTAGTTCTTC+TGG 0.234735 2_2:-32712281 None:intergenic
CCCAGGTTCCATGTTCTTGT+TGG 0.250535 2_2:-32711456 None:intergenic
GTGGAAACCGGCTCCCAATT+TGG 0.255625 2_2:-32711317 None:intergenic
AAAGTTGTTTAATATTTAAA+TGG 0.256738 2_2:+32714115 Msa0248560:three_prime_UTR
TTTCAAAATGAAAGCTTTGA+TGG 0.283665 2_2:+32713869 Msa0248560:three_prime_UTR
TTGGAGTTAGTGGTAGAAAA+AGG 0.292511 2_2:-32711298 None:intergenic
GCACTTCATAAGGCGGTTAT+AGG 0.299638 2_2:+32712611 Msa0248560:CDS
CAGGCAACTGAGTTCTATAA+TGG 0.334456 2_2:+32713738 Msa0248560:exon
TGATATTGATTTCGTCAATA+AGG 0.337108 2_2:+32712498 Msa0248560:CDS
GAAAACATATATGGATTGTT+TGG 0.341709 2_2:+32711243 Msa0248560:exon
TGTAGGAATGATATATCTAA+TGG 0.348095 2_2:+32714008 Msa0248560:three_prime_UTR
CCAGGTTCCATGTTCTTGTT+GGG 0.349630 2_2:-32711455 None:intergenic
AGATAGATCGATAGAAAATA+AGG 0.384701 2_2:+32713056 Msa0248560:CDS
GGCTCCCAATTTGGAGTTAG+TGG 0.384780 2_2:-32711308 None:intergenic
TCACTGTCACTACGAATATC+TGG 0.387326 2_2:-32711484 None:intergenic
CCTATGGTGGTATACCTATC+AGG 0.395118 2_2:+32710295 None:intergenic
AGTATAAAGCACCAATTAGA+AGG 0.397248 2_2:-32713812 None:intergenic
CTTGCTAGATTAATTAAGAT+AGG 0.413079 2_2:+32713713 Msa0248560:CDS
CTTCTACATCAATGATTCCT+TGG 0.421877 2_2:+32713895 Msa0248560:three_prime_UTR
AAGTCTTATTTCAGATATGT+AGG 0.425070 2_2:+32713991 Msa0248560:three_prime_UTR
TCTACCACTAACTCCAAATT+GGG 0.430028 2_2:+32711304 Msa0248560:CDS
TTTATCTCTCACTTCTCAAC+GGG 0.437477 2_2:-32710349 None:intergenic
TTTGAACGGCAACATGCAAT+GGG 0.445663 2_2:-32712990 None:intergenic
TGGAGCCCGCTGCACTCTCT+TGG 0.448549 2_2:+32712427 Msa0248560:CDS
ATAAATTTATTAGAAAGAAC+AGG 0.449639 2_2:-32711274 None:intergenic
CCCAACAAGAACATGGAACC+TGG 0.455702 2_2:+32711455 Msa0248560:CDS
CTGGATATAAGTATATGTTA+TGG 0.458251 2_2:+32713668 Msa0248560:CDS
CTTTATACTTCTTCAATCAT+CGG 0.458597 2_2:+32713826 Msa0248560:three_prime_UTR
AGAGCGAAGAGAAGAGAAGA+AGG 0.461972 2_2:+32710416 Msa0248560:five_prime_UTR
CTTTGAACGGCAACATGCAA+TGG 0.462361 2_2:-32712991 None:intergenic
TCTGTATATTCTGTGGAAAC+CGG 0.463667 2_2:-32711329 None:intergenic
AGGTCTCACTGCACTTCATA+AGG 0.467266 2_2:+32712601 Msa0248560:CDS
TTGCACCTTTCCGTAAAAGA+TGG 0.475406 2_2:-32712655 None:intergenic
AATTTATCCACACCTTATCC+TGG 0.484529 2_2:-32712688 None:intergenic
AGAGACGCAGGACGAGTATG+AGG 0.486038 2_2:+32711573 Msa0248560:CDS
TGCATGTTGCCGTTCAAAGC+CGG 0.486087 2_2:+32712995 Msa0248560:CDS
GTAGGAATGATATATCTAAT+GGG 0.487345 2_2:+32714009 Msa0248560:three_prime_UTR
ATATAACTAAAGATTCAATC+TGG 0.489614 2_2:-32713782 None:intergenic
TATCGATCTATCTGCGCCAT+TGG 0.492748 2_2:-32713046 None:intergenic
CTTCTCAACGGGTAAGAAGA+AGG 0.494569 2_2:-32710338 None:intergenic
GACGAAGAAGATAAAAGCCT+TGG 0.496557 2_2:+32711520 Msa0248560:CDS
ACGAATATCTGGTTCTTCCC+AGG 0.501030 2_2:-32711473 None:intergenic
CATTATAGAACTCAGTTGCC+TGG 0.505053 2_2:-32713737 None:intergenic
ATCTCTATTCCGGCTTTGAA+CGG 0.506075 2_2:-32713004 None:intergenic
TAATAATCTCTCAGGAAGGT+TGG 0.511156 2_2:+32712965 Msa0248560:intron
CTTTATCTCTCACTTCTCAA+CGG 0.512013 2_2:-32710350 None:intergenic
AGGCAACTGAGTTCTATAAT+GGG 0.513541 2_2:+32713739 Msa0248560:exon
AAGAGAAGAAGGATAAGTAA+AGG 0.514249 2_2:+32710427 Msa0248560:five_prime_UTR
AAGTCCTCATGTCCAGGATA+AGG 0.522498 2_2:+32712676 Msa0248560:CDS
CTTCATTATGCAGTTCAAGT+TGG 0.528881 2_2:+32712798 Msa0248560:CDS
AAGAAAGCAAGCACAGTAGC+GGG 0.529268 2_2:+32710380 Msa0248560:five_prime_UTR
AGGTGCAAGTCCTCATGTCC+AGG 0.541101 2_2:+32712670 Msa0248560:CDS
AGATTAATTAAGATAGGTCC+AGG 0.543202 2_2:+32713719 Msa0248560:CDS
TTGCAAACCCAACAAGAACA+TGG 0.559818 2_2:+32711448 Msa0248560:CDS
TATGAGGAGCGTATTAAGAA+AGG 0.561332 2_2:+32711589 Msa0248560:CDS
ATGGACAAGCTTCTTGAAAG+TGG 0.562294 2_2:+32712472 Msa0248560:CDS
ATATTGACAAGAGTCCTGAT+AGG 0.569961 2_2:-32710309 None:intergenic
ATAAGCCAAGAGAGTGCAGC+GGG 0.573360 2_2:-32712432 None:intergenic
TCAGGATGGGAAAACAGCAC+TGG 0.573451 2_2:+32713649 Msa0248560:intron
GCAGGAAGAGACAGAGACGC+AGG 0.575387 2_2:+32711561 Msa0248560:CDS
ACTAACTCCAAATTGGGAGC+CGG 0.582328 2_2:+32711310 Msa0248560:CDS
ACTTGAACTGCATAATGAAG+TGG 0.583827 2_2:-32712795 None:intergenic
ATAAGGAGAATTGCGAAGGT+CGG 0.595160 2_2:+32711386 Msa0248560:CDS
CTATCTTAATTAATCTAGCA+AGG 0.596792 2_2:-32713712 None:intergenic
ACTGAGTTCTATAATGGGCG+AGG 0.602333 2_2:+32713744 Msa0248560:exon
TTCTCAACGGGTAAGAAGAA+GGG 0.602508 2_2:-32710337 None:intergenic
GAAGAAAGCAAGCACAGTAG+CGG 0.629525 2_2:+32710379 Msa0248560:five_prime_UTR
GATAAGCCAAGAGAGTGCAG+CGG 0.632445 2_2:-32712433 None:intergenic
CCAACAAGAACATGGAACCT+GGG 0.641739 2_2:+32711456 Msa0248560:CDS
CACACCTTATCCTGGACATG+AGG 0.646294 2_2:-32712680 None:intergenic
GTTGCAATCAAATCAAGCAG+AGG 0.658547 2_2:+32711415 Msa0248560:CDS
TGAATTGTAACAAGTTGACG+TGG 0.662481 2_2:+32714052 Msa0248560:three_prime_UTR
TTGTACGTCTGTATATTCTG+TGG 0.683826 2_2:-32711336 None:intergenic
TCTCACTGCACTTCATAAGG+CGG 0.692716 2_2:+32712604 Msa0248560:CDS
AAAGCAAGCACAGTAGCGGG+CGG 0.710219 2_2:+32710383 Msa0248560:five_prime_UTR
ATACAATGTTGATGTCAATG+TGG 0.742113 2_2:+32712851 Msa0248560:CDS
TTGAACGGCAACATGCAATG+GGG 0.746359 2_2:-32712989 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTATTTATTTAT+TGG - chr2_2:32712160-32712179 None:intergenic 0.0%
!! TAAAAAAATATATTGAATGA+TGG + chr2_2:32712169-32712188 Msa0248560:intron 10.0%
!! TGTTTATATATTTATTGATA+TGG + chr2_2:32712757-32712776 Msa0248560:intron 10.0%
!! AAAGTTGTTTAATATTTAAA+TGG + chr2_2:32714115-32714134 Msa0248560:three_prime_UTR 10.0%
!!! TTTATTTTTTTCTCTTTTTC+AGG + chr2_2:32711221-32711240 Msa0248560:intron 15.0%
!! ATAAATTTATTAGAAAGAAC+AGG - chr2_2:32711277-32711296 None:intergenic 15.0%
!!! TCAGTCTAAATTTTAATAAT+TGG + chr2_2:32711817-32711836 Msa0248560:intron 15.0%
!!! TAACAAAAGTATCAATTTAT+AGG - chr2_2:32712235-32712254 None:intergenic 15.0%
!! TAGAAAAAAAATATTAGATG+AGG + chr2_2:32713184-32713203 Msa0248560:intron 15.0%
!! AGAAAAAAAATATTAGATGA+GGG + chr2_2:32713185-32713204 Msa0248560:intron 15.0%
!!! TTTTGATTGTCTAATTAATT+CGG - chr2_2:32713225-32713244 None:intergenic 15.0%
!! ATTATTTGTTTCCATGAATT+AGG - chr2_2:32710496-32710515 None:intergenic 20.0%
!!! TTAGTTTGAAATCCAAAAAA+GGG - chr2_2:32710843-32710862 None:intergenic 20.0%
!!! ATTAGTTTGAAATCCAAAAA+AGG - chr2_2:32710844-32710863 None:intergenic 20.0%
!!! TTTTGGATTTCAAACTAATT+AGG + chr2_2:32710845-32710864 Msa0248560:intron 20.0%
!!! ATACAGATTTTTGAATTTGA+GGG - chr2_2:32710873-32710892 None:intergenic 20.0%
!! GATTTGAACAATAAATAACA+TGG + chr2_2:32710976-32710995 Msa0248560:intron 20.0%
!! ATAAGATATGACAAAAAAGA+AGG + chr2_2:32712009-32712028 Msa0248560:intron 20.0%
!! TTTGTACTTTATACTTTCAA+TGG + chr2_2:32712097-32712116 Msa0248560:intron 20.0%
!!! GATGATATTTTTTCCAAATT+AGG - chr2_2:32712320-32712339 None:intergenic 20.0%
!!! ATCATTTCAGATTTTTAGTA+TGG + chr2_2:32712453-32712472 Msa0248560:CDS 20.0%
!! TATATATTTATTGATATGGC+AGG + chr2_2:32712761-32712780 Msa0248560:intron 20.0%
!! TTTACTATTAATAATCTCTC+AGG + chr2_2:32712957-32712976 Msa0248560:intron 20.0%
!! TCAATAATTAATATGCAACA+TGG + chr2_2:32713107-32713126 Msa0248560:intron 20.0%
!!! ACTTATACATACACTTTTAT+AGG + chr2_2:32713467-32713486 Msa0248560:intron 20.0%
!!! AATTTGAGTTTATAATTGAC+TGG - chr2_2:32713558-32713577 None:intergenic 20.0%
!! AGTCAATTATAAACTCAAAT+TGG + chr2_2:32713557-32713576 Msa0248560:intron 20.0%
!! ATATAACTAAAGATTCAATC+TGG - chr2_2:32713785-32713804 None:intergenic 20.0%
!!! GCTTTCATTTTGAAAAATAT+CGG - chr2_2:32713864-32713883 None:intergenic 20.0%
! ACATGTTTATCATTTAGAAG+AGG - chr2_2:32710765-32710784 None:intergenic 25.0%
!! GATACAGATTTTTGAATTTG+AGG - chr2_2:32710874-32710893 None:intergenic 25.0%
!! ATACAAAATCTAGTTCAACT+CGG - chr2_2:32710896-32710915 None:intergenic 25.0%
! TTCTTATCTCCAACAATTAA+GGG + chr2_2:32711033-32711052 Msa0248560:intron 25.0%
! AACTAGAAATTGCATAAGAA+AGG - chr2_2:32711102-32711121 None:intergenic 25.0%
! GAATCATCATCATATAGTTT+GGG - chr2_2:32711158-32711177 None:intergenic 25.0%
! TGAATCATCATCATATAGTT+TGG - chr2_2:32711159-32711178 None:intergenic 25.0%
!!! CTTTTTCAGGAAAACATATA+TGG + chr2_2:32711234-32711253 Msa0248560:intron 25.0%
!! GAAAACATATATGGATTGTT+TGG + chr2_2:32711243-32711262 Msa0248560:exon 25.0%
!! ATTACGTCTCTCTTTTTATA+AGG + chr2_2:32711369-32711388 Msa0248560:CDS 25.0%
!! GTTTTCAATATCATGACATA+TGG - chr2_2:32711653-32711672 None:intergenic 25.0%
! TATGTCATGATATTGAAAAC+TGG + chr2_2:32711653-32711672 Msa0248560:intron 25.0%
! ATGTCATGATATTGAAAACT+GGG + chr2_2:32711654-32711673 Msa0248560:intron 25.0%
! TTAATAATTGGTCAGAAGTT+TGG + chr2_2:32711829-32711848 Msa0248560:intron 25.0%
! TAATAATTGGTCAGAAGTTT+GGG + chr2_2:32711830-32711849 Msa0248560:intron 25.0%
!! AACCTTTTAATCCAAGTATA+GGG - chr2_2:32711865-32711884 None:intergenic 25.0%
!! AAACCTTTTAATCCAAGTAT+AGG - chr2_2:32711866-32711885 None:intergenic 25.0%
! AGGTTTACAGTTTATCATAT+AGG + chr2_2:32711880-32711899 Msa0248560:intron 25.0%
! TAAGAGAAAAAACACAACAA+GGG - chr2_2:32711928-32711947 None:intergenic 25.0%
! TTAAGAGAAAAAACACAACA+AGG - chr2_2:32711929-32711948 None:intergenic 25.0%
!!! TAAAGCAGTATTTTGAAAAC+TGG - chr2_2:32712056-32712075 None:intergenic 25.0%
!!! TTTACACATTTCTCCTTTTT+TGG + chr2_2:32712072-32712091 Msa0248560:intron 25.0%
! TAAAGTACAAACACCAAAAA+AGG - chr2_2:32712088-32712107 None:intergenic 25.0%
!!! AATGGTTTTAAGCTTTGATA+AGG + chr2_2:32712115-32712134 Msa0248560:intron 25.0%
! ATTGGAGATATTCAACAATT+AGG - chr2_2:32712142-32712161 None:intergenic 25.0%
! ACAGAATATAACTCCTAATT+TGG + chr2_2:32712304-32712323 Msa0248560:CDS 25.0%
! TTTCATGTATTCAGGAAAAA+TGG + chr2_2:32712407-32712426 Msa0248560:intron 25.0%
!!! TGATATTGATTTCGTCAATA+AGG + chr2_2:32712498-32712517 Msa0248560:CDS 25.0%
!! CAATTATCTTATTTACGACT+AGG - chr2_2:32712570-32712589 None:intergenic 25.0%
! CTAGTCGTAAATAAGATAAT+TGG + chr2_2:32712568-32712587 Msa0248560:intron 25.0%
! AGATAGATCGATAGAAAATA+AGG + chr2_2:32713056-32713075 Msa0248560:CDS 25.0%
! TAATAGTTCAGTTAATCAGT+TGG + chr2_2:32713251-32713270 Msa0248560:intron 25.0%
! TTTCATATTAGTTGCAAACT+AGG - chr2_2:32713405-32713424 None:intergenic 25.0%
! CTGGATATAAGTATATGTTA+TGG + chr2_2:32713668-32713687 Msa0248560:CDS 25.0%
! CTATCTTAATTAATCTAGCA+AGG - chr2_2:32713715-32713734 None:intergenic 25.0%
! CTTGCTAGATTAATTAAGAT+AGG + chr2_2:32713713-32713732 Msa0248560:CDS 25.0%
! ATATGTTATGTCCTTCTAAT+TGG + chr2_2:32713801-32713820 Msa0248560:three_prime_UTR 25.0%
! CTTTATACTTCTTCAATCAT+CGG + chr2_2:32713826-32713845 Msa0248560:three_prime_UTR 25.0%
!! TTTCAAAATGAAAGCTTTGA+TGG + chr2_2:32713869-32713888 Msa0248560:three_prime_UTR 25.0%
!!! AAGTCTTATTTCAGATATGT+AGG + chr2_2:32713991-32714010 Msa0248560:three_prime_UTR 25.0%
! TGTAGGAATGATATATCTAA+TGG + chr2_2:32714008-32714027 Msa0248560:three_prime_UTR 25.0%
! GTAGGAATGATATATCTAAT+GGG + chr2_2:32714009-32714028 Msa0248560:three_prime_UTR 25.0%
AAGAGAAGAAGGATAAGTAA+AGG + chr2_2:32710427-32710446 Msa0248560:five_prime_UTR 30.0%
ATGAAGAAGAAACGAAGAAT+TGG - chr2_2:32710559-32710578 None:intergenic 30.0%
!!! CTGTTTTGTTTAATTACCAG+TGG - chr2_2:32710594-32710613 None:intergenic 30.0%
!! CAGTTTTATGAATGCTTACA+TGG + chr2_2:32710721-32710740 Msa0248560:intron 30.0%
TAATTGTTGGAGATAAGAAC+TGG - chr2_2:32711032-32711051 None:intergenic 30.0%
GTTCTTATCTCCAACAATTA+AGG + chr2_2:32711032-32711051 Msa0248560:intron 30.0%
! AAAGTAGGAATTGTTCTAGA+GGG - chr2_2:32711067-32711086 None:intergenic 30.0%
AAAAGTAGGAATTGTTCTAG+AGG - chr2_2:32711068-32711087 None:intergenic 30.0%
AGGCATTTGAAAACAAAAGT+AGG - chr2_2:32711082-32711101 None:intergenic 30.0%
!! TATGCAATTTCTAGTTCATG+TGG + chr2_2:32711106-32711125 Msa0248560:intron 30.0%
! AGAGAGACGTAATTTTTGTT+TGG - chr2_2:32711362-32711381 None:intergenic 30.0%
! TTTTATAAGGAGAATTGCGA+AGG + chr2_2:32711382-32711401 Msa0248560:CDS 30.0%
AGCCTTGGATTTAAAAATGA+TGG + chr2_2:32711535-32711554 Msa0248560:CDS 30.0%
GCCTTGGATTTAAAAATGAT+GGG + chr2_2:32711536-32711555 Msa0248560:CDS 30.0%
CCTTGGATTTAAAAATGATG+GGG + chr2_2:32711537-32711556 Msa0248560:CDS 30.0%
!! TCATGTTACTTTGTCTCTAT+TGG + chr2_2:32711624-32711643 Msa0248560:intron 30.0%
CTGATCAATGATCATGATTA+TGG - chr2_2:32711781-32711800 None:intergenic 30.0%
AAGAAGGTTTACCAATTTCA+TGG + chr2_2:32712025-32712044 Msa0248560:intron 30.0%
! TGATACTTTTGTTAATGCAG+AGG + chr2_2:32712241-32712260 Msa0248560:intron 30.0%
!!! GCTCTTATTTTCATGTATTC+AGG + chr2_2:32712399-32712418 Msa0248560:intron 30.0%
AATAAGATAATTGGATCGAC+AGG + chr2_2:32712577-32712596 Msa0248560:intron 30.0%
! CTGTTATAAGCCATCTTTTA+CGG + chr2_2:32712645-32712664 Msa0248560:CDS 30.0%
TATTTATTGATATGGCAGGA+TGG + chr2_2:32712765-32712784 Msa0248560:intron 30.0%
ATACAATGTTGATGTCAATG+TGG + chr2_2:32712851-32712870 Msa0248560:CDS 30.0%
!!! TCAGTTTTACTTGCTGTATA+TGG + chr2_2:32712930-32712949 Msa0248560:intron 30.0%
!!! CAGTTTTACTTGCTGTATAT+GGG + chr2_2:32712931-32712950 Msa0248560:intron 30.0%
CTATTAATAATCTCTCAGGA+AGG + chr2_2:32712961-32712980 Msa0248560:intron 30.0%
! TTTTCGCTATATCTCTATTC+CGG - chr2_2:32713017-32713036 None:intergenic 30.0%
TTAATTATTGAGCTCTGTAG+TGG - chr2_2:32713098-32713117 None:intergenic 30.0%
TTGCAAACTAGGTATTATGT+GGG - chr2_2:32713394-32713413 None:intergenic 30.0%
! TCATTGATTGGTTATGTTTC+AGG + chr2_2:32713631-32713650 Msa0248560:intron 30.0%
AGATTAATTAAGATAGGTCC+AGG + chr2_2:32713719-32713738 Msa0248560:CDS 30.0%
! AGTATAAAGCACCAATTAGA+AGG - chr2_2:32713815-32713834 None:intergenic 30.0%
TATAATCTGCACTACGTATT+TGG - chr2_2:32713972-32713991 None:intergenic 30.0%
ATATTGACAAGAGTCCTGAT+AGG - chr2_2:32710312-32710331 None:intergenic 35.0%
TTTATCTCTCACTTCTCAAC+GGG - chr2_2:32710352-32710371 None:intergenic 35.0%
CTTTATCTCTCACTTCTCAA+CGG - chr2_2:32710353-32710372 None:intergenic 35.0%
! ATCCTTTTGCTCCTAATTCA+TGG + chr2_2:32710482-32710501 Msa0248560:intron 35.0%
TTCCATGAATTAGGAGCAAA+AGG - chr2_2:32710487-32710506 None:intergenic 35.0%
!! ATTTCTAGTTCATGTGGTTG+TGG + chr2_2:32711112-32711131 Msa0248560:intron 35.0%
TTGGAGTTAGTGGTAGAAAA+AGG - chr2_2:32711301-32711320 None:intergenic 35.0%
TTCTACCACTAACTCCAAAT+TGG + chr2_2:32711303-32711322 Msa0248560:CDS 35.0%
TCTACCACTAACTCCAAATT+GGG + chr2_2:32711304-32711323 Msa0248560:CDS 35.0%
TCTGTATATTCTGTGGAAAC+CGG - chr2_2:32711332-32711351 None:intergenic 35.0%
TTGTACGTCTGTATATTCTG+TGG - chr2_2:32711339-32711358 None:intergenic 35.0%
!! CCCCATCATTTTTAAATCCA+AGG - chr2_2:32711540-32711559 None:intergenic 35.0%
! ATTTAAAAATGATGGGGAGC+AGG + chr2_2:32711543-32711562 Msa0248560:CDS 35.0%
! TATGAGGAGCGTATTAAGAA+AGG + chr2_2:32711589-32711608 Msa0248560:CDS 35.0%
ACCTAGAACTTGTATCAGAT+TGG + chr2_2:32711699-32711718 Msa0248560:intron 35.0%
TCCAATCTGATACAAGTTCT+AGG - chr2_2:32711703-32711722 None:intergenic 35.0%
AATCATACATGAGTATGAGC+TGG + chr2_2:32711732-32711751 Msa0248560:intron 35.0%
CTCCCTATACTTGGATTAAA+AGG + chr2_2:32711860-32711879 Msa0248560:intron 35.0%
TAAGATACGAGTGTCTAACA+AGG - chr2_2:32711978-32711997 None:intergenic 35.0%
!! GCAGTATTTTGAAAACTGGA+TGG - chr2_2:32712052-32712071 None:intergenic 35.0%
!! TGCAGTATTTCTAGTTCTTC+TGG - chr2_2:32712284-32712303 None:intergenic 35.0%
! ATAAGCCATCTTTTACGGAA+AGG + chr2_2:32712650-32712669 Msa0248560:CDS 35.0%
AATTTATCCACACCTTATCC+TGG - chr2_2:32712691-32712710 None:intergenic 35.0%
GTCAACAGCATATGAACATA+AGG - chr2_2:32712714-32712733 None:intergenic 35.0%
ACTTGAACTGCATAATGAAG+TGG - chr2_2:32712798-32712817 None:intergenic 35.0%
CTTCATTATGCAGTTCAAGT+TGG + chr2_2:32712798-32712817 Msa0248560:CDS 35.0%
TAATAATCTCTCAGGAAGGT+TGG + chr2_2:32712965-32712984 Msa0248560:intron 35.0%
! GCGAAAATTTTGTTAGCCAA+TGG + chr2_2:32713030-32713049 Msa0248560:CDS 35.0%
AAAAATATTAGATGAGGGCC+AGG + chr2_2:32713190-32713209 Msa0248560:intron 35.0%
TCTAATTAATTCGGCCCATT+GGG - chr2_2:32713216-32713235 None:intergenic 35.0%
! TCAGTACAGAACAGTTTTTC+AGG + chr2_2:32713285-32713304 Msa0248560:intron 35.0%
!!! TACAGAACAGTTTTTCAGGT+AGG + chr2_2:32713289-32713308 Msa0248560:intron 35.0%
TGCAAACTAGGTATTATGTG+GGG - chr2_2:32713393-32713412 None:intergenic 35.0%
GTTGCAAACTAGGTATTATG+TGG - chr2_2:32713395-32713414 None:intergenic 35.0%
!!! GAGTTGTTCTTTTTTGCTTG+CGG + chr2_2:32713601-32713620 Msa0248560:intron 35.0%
! TGATTGGTTATGTTTCAGGA+TGG + chr2_2:32713635-32713654 Msa0248560:intron 35.0%
! GATTGGTTATGTTTCAGGAT+GGG + chr2_2:32713636-32713655 Msa0248560:intron 35.0%
AGGCAACTGAGTTCTATAAT+GGG + chr2_2:32713739-32713758 Msa0248560:exon 35.0%
CTTCTACATCAATGATTCCT+TGG + chr2_2:32713895-32713914 Msa0248560:three_prime_UTR 35.0%
ACTGCAAAAATGTTCTTCCA+AGG - chr2_2:32713915-32713934 None:intergenic 35.0%
! TGAATTGTAACAAGTTGACG+TGG + chr2_2:32714052-32714071 Msa0248560:three_prime_UTR 35.0%
TTCTCAACGGGTAAGAAGAA+GGG - chr2_2:32710340-32710359 None:intergenic 40.0%
TTAGTGTTAGACACAGACAC+TGG + chr2_2:32710643-32710662 Msa0248560:intron 40.0%
GAATGCTTACATGGACTCTT+TGG + chr2_2:32710730-32710749 Msa0248560:intron 40.0%
GTTATCATCAACAACGCGAA+TGG - chr2_2:32710795-32710814 None:intergenic 40.0%
ATAAGGAGAATTGCGAAGGT+CGG + chr2_2:32711386-32711405 Msa0248560:CDS 40.0%
GTTGCAATCAAATCAAGCAG+AGG + chr2_2:32711415-32711434 Msa0248560:CDS 40.0%
TTGCAAACCCAACAAGAACA+TGG + chr2_2:32711448-32711467 Msa0248560:CDS 40.0%
TCACTGTCACTACGAATATC+TGG - chr2_2:32711487-32711506 None:intergenic 40.0%
GACGAAGAAGATAAAAGCCT+TGG + chr2_2:32711520-32711539 Msa0248560:CDS 40.0%
CATGATATTGAAAACTGGGC+CGG + chr2_2:32711658-32711677 Msa0248560:intron 40.0%
TTAGCCAACACAGAAATGTC+CGG - chr2_2:32711680-32711699 None:intergenic 40.0%
CCAGCTCATACTCATGATTA+TGG - chr2_2:32711758-32711777 None:intergenic 40.0%
CCATAATCATGAGTATGAGC+TGG + chr2_2:32711755-32711774 Msa0248560:intron 40.0%
GGATTACAACTCCCTATACT+TGG + chr2_2:32711851-32711870 Msa0248560:intron 40.0%
GAAAAAACACAACAAGGGCT+GGG - chr2_2:32711923-32711942 None:intergenic 40.0%
AGAAAAAACACAACAAGGGC+TGG - chr2_2:32711924-32711943 None:intergenic 40.0%
AACTGGATGGACCATGAAAT+TGG - chr2_2:32712039-32712058 None:intergenic 40.0%
CAAATGCAGATAAGAACGCA+AGG - chr2_2:32712378-32712397 None:intergenic 40.0%
ATGGACAAGCTTCTTGAAAG+TGG + chr2_2:32712472-32712491 Msa0248560:CDS 40.0%
AGATAATTGGATCGACAGGA+AGG + chr2_2:32712581-32712600 Msa0248560:intron 40.0%
TTGCACCTTTCCGTAAAAGA+TGG - chr2_2:32712658-32712677 None:intergenic 40.0%
TTTGAACGGCAACATGCAAT+GGG - chr2_2:32712993-32713012 None:intergenic 40.0%
!! ATCTCTATTCCGGCTTTGAA+CGG - chr2_2:32713007-32713026 None:intergenic 40.0%
GTCTAATTAATTCGGCCCAT+TGG - chr2_2:32713217-32713236 None:intergenic 40.0%
!!! GTTTTTCAGGTAGGTATCAG+TGG + chr2_2:32713298-32713317 Msa0248560:intron 40.0%
!! AAGCTGTTTTGAGCTCGTTT+CGG + chr2_2:32713363-32713382 Msa0248560:intron 40.0%
! GACTGGTTCAAAAGCATGTA+GGG - chr2_2:32713541-32713560 None:intergenic 40.0%
! TGACTGGTTCAAAAGCATGT+AGG - chr2_2:32713542-32713561 None:intergenic 40.0%
GTTTGCATGCTAGTGAATAG+TGG + chr2_2:32713579-32713598 Msa0248560:intron 40.0%
TGCGGTAGAACTTCATTGAT+TGG + chr2_2:32713619-32713638 Msa0248560:intron 40.0%
CATTATAGAACTCAGTTGCC+TGG - chr2_2:32713740-32713759 None:intergenic 40.0%
CAGGCAACTGAGTTCTATAA+TGG + chr2_2:32713738-32713757 Msa0248560:exon 40.0%
CTTCTCAACGGGTAAGAAGA+AGG - chr2_2:32710341-32710360 None:intergenic 45.0%
GAAGAAAGCAAGCACAGTAG+CGG + chr2_2:32710379-32710398 Msa0248560:five_prime_UTR 45.0%
AAGAAAGCAAGCACAGTAGC+GGG + chr2_2:32710380-32710399 Msa0248560:five_prime_UTR 45.0%
AGAGCGAAGAGAAGAGAAGA+AGG + chr2_2:32710416-32710435 Msa0248560:five_prime_UTR 45.0%
! AATTACCAGTGGTGTCAACG+TGG - chr2_2:32710583-32710602 None:intergenic 45.0%
!! AAACCTATGTAGCACCGACA+AGG - chr2_2:32710674-32710693 None:intergenic 45.0%
!!! GTCGGTGCTACATAGGTTTT+AGG + chr2_2:32710675-32710694 Msa0248560:intron 45.0%
!! CCAAAAAAGGGCTAGCTTTC+TGG - chr2_2:32710831-32710850 None:intergenic 45.0%
!!! CCAGAAAGCTAGCCCTTTTT+TGG + chr2_2:32710828-32710847 Msa0248560:intron 45.0%
ACTAACTCCAAATTGGGAGC+CGG + chr2_2:32711310-32711329 Msa0248560:CDS 45.0%
CCAGGTTCCATGTTCTTGTT+GGG - chr2_2:32711458-32711477 None:intergenic 45.0%
CCAACAAGAACATGGAACCT+GGG + chr2_2:32711456-32711475 Msa0248560:CDS 45.0%
!! ACGAATATCTGGTTCTTCCC+AGG - chr2_2:32711476-32711495 None:intergenic 45.0%
AGATAAGAACGCAAGGCTCT+AGG - chr2_2:32712371-32712390 None:intergenic 45.0%
AGGTCTCACTGCACTTCATA+AGG + chr2_2:32712601-32712620 Msa0248560:CDS 45.0%
TCTCACTGCACTTCATAAGG+CGG + chr2_2:32712604-32712623 Msa0248560:CDS 45.0%
GCACTTCATAAGGCGGTTAT+AGG + chr2_2:32712611-32712630 Msa0248560:CDS 45.0%
AAGTCCTCATGTCCAGGATA+AGG + chr2_2:32712676-32712695 Msa0248560:CDS 45.0%
TTGAACGGCAACATGCAATG+GGG - chr2_2:32712992-32713011 None:intergenic 45.0%
CTTTGAACGGCAACATGCAA+TGG - chr2_2:32712994-32713013 None:intergenic 45.0%
TATCGATCTATCTGCGCCAT+TGG - chr2_2:32713049-32713068 None:intergenic 45.0%
!! ACTGAGTTCTATAATGGGCG+AGG + chr2_2:32713744-32713763 Msa0248560:exon 45.0%
TCATTCCACGTTGACACCAC+TGG + chr2_2:32710575-32710594 Msa0248560:intron 50.0%
AGACACTGGACACACCTTGT+CGG + chr2_2:32710657-32710676 Msa0248560:intron 50.0%
!! ACACCTTGTCGGTGCTACAT+AGG + chr2_2:32710668-32710687 Msa0248560:intron 50.0%
GCGAAGCAGCCCTTAATTGT+TGG - chr2_2:32711045-32711064 None:intergenic 50.0%
! GGCTCCCAATTTGGAGTTAG+TGG - chr2_2:32711311-32711330 None:intergenic 50.0%
CCCAACAAGAACATGGAACC+TGG + chr2_2:32711455-32711474 Msa0248560:CDS 50.0%
CCCAGGTTCCATGTTCTTGT+TGG - chr2_2:32711459-32711478 None:intergenic 50.0%
! ATAAGCCAAGAGAGTGCAGC+GGG - chr2_2:32712435-32712454 None:intergenic 50.0%
! GATAAGCCAAGAGAGTGCAG+CGG - chr2_2:32712436-32712455 None:intergenic 50.0%
CACACCTTATCCTGGACATG+AGG - chr2_2:32712683-32712702 None:intergenic 50.0%
CTCATGTCCAGGATAAGGTG+TGG + chr2_2:32712681-32712700 Msa0248560:intron 50.0%
TGCATGTTGCCGTTCAAAGC+CGG + chr2_2:32712995-32713014 Msa0248560:CDS 50.0%
TCAGGATGGGAAAACAGCAC+TGG + chr2_2:32713649-32713668 Msa0248560:intron 50.0%
! AAAGCAAGCACAGTAGCGGG+CGG + chr2_2:32710383-32710402 Msa0248560:five_prime_UTR 55.0%
! GTGGAAACCGGCTCCCAATT+TGG - chr2_2:32711320-32711339 None:intergenic 55.0%
AGAGACGCAGGACGAGTATG+AGG + chr2_2:32711573-32711592 Msa0248560:CDS 55.0%
TGGGCCGGACATTTCTGTGT+TGG + chr2_2:32711673-32711692 Msa0248560:intron 55.0%
AGGTGCAAGTCCTCATGTCC+AGG + chr2_2:32712670-32712689 Msa0248560:CDS 55.0%
TTAATTCGGCCCATTGGGCC+TGG - chr2_2:32713211-32713230 None:intergenic 55.0%
GCAGGAAGAGACAGAGACGC+AGG + chr2_2:32711561-32711580 Msa0248560:CDS 60.0%
TAGATGAGGGCCAGGCCCAA+TGG + chr2_2:32713198-32713217 Msa0248560:intron 60.0%
AGATGAGGGCCAGGCCCAAT+GGG + chr2_2:32713199-32713218 Msa0248560:intron 60.0%
TGGAGCCCGCTGCACTCTCT+TGG + chr2_2:32712427-32712446 Msa0248560:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 32710309 32714155 32710309 ID=Msa0248560;Name=Msa0248560
chr2_2 mRNA 32710309 32714155 32710309 ID=Msa0248560-mRNA-1;Parent=Msa0248560;Name=Msa0248560-mRNA-1;_AED=0.12;_eAED=0.12;_QI=156|1|1|1|0.85|0.87|8|407|309
chr2_2 exon 32710309 32710454 32710309 ID=Msa0248560-mRNA-1:exon:11144;Parent=Msa0248560-mRNA-1
chr2_2 exon 32711243 32711610 32711243 ID=Msa0248560-mRNA-1:exon:11145;Parent=Msa0248560-mRNA-1
chr2_2 exon 32712261 32712340 32712261 ID=Msa0248560-mRNA-1:exon:11146;Parent=Msa0248560-mRNA-1
chr2_2 exon 32712421 32712519 32712421 ID=Msa0248560-mRNA-1:exon:11147;Parent=Msa0248560-mRNA-1
chr2_2 exon 32712599 32712697 32712599 ID=Msa0248560-mRNA-1:exon:11148;Parent=Msa0248560-mRNA-1
chr2_2 exon 32712783 32712881 32712783 ID=Msa0248560-mRNA-1:exon:11149;Parent=Msa0248560-mRNA-1
chr2_2 exon 32712979 32713077 32712979 ID=Msa0248560-mRNA-1:exon:11150;Parent=Msa0248560-mRNA-1
chr2_2 exon 32713653 32714155 32713653 ID=Msa0248560-mRNA-1:exon:11151;Parent=Msa0248560-mRNA-1
chr2_2 five_prime_UTR 32710309 32710454 32710309 ID=Msa0248560-mRNA-1:five_prime_utr;Parent=Msa0248560-mRNA-1
chr2_2 five_prime_UTR 32711243 32711252 32711243 ID=Msa0248560-mRNA-1:five_prime_utr;Parent=Msa0248560-mRNA-1
chr2_2 CDS 32711253 32711610 32711253 ID=Msa0248560-mRNA-1:cds;Parent=Msa0248560-mRNA-1
chr2_2 CDS 32712261 32712340 32712261 ID=Msa0248560-mRNA-1:cds;Parent=Msa0248560-mRNA-1
chr2_2 CDS 32712421 32712519 32712421 ID=Msa0248560-mRNA-1:cds;Parent=Msa0248560-mRNA-1
chr2_2 CDS 32712599 32712697 32712599 ID=Msa0248560-mRNA-1:cds;Parent=Msa0248560-mRNA-1
chr2_2 CDS 32712783 32712881 32712783 ID=Msa0248560-mRNA-1:cds;Parent=Msa0248560-mRNA-1
chr2_2 CDS 32712979 32713077 32712979 ID=Msa0248560-mRNA-1:cds;Parent=Msa0248560-mRNA-1
chr2_2 CDS 32713653 32713748 32713653 ID=Msa0248560-mRNA-1:cds;Parent=Msa0248560-mRNA-1
chr2_2 three_prime_UTR 32713749 32714155 32713749 ID=Msa0248560-mRNA-1:three_prime_utr;Parent=Msa0248560-mRNA-1
Gene Sequence

>Msa0248560

ATGGATTGTTTGGCTACATCACCTGTTCTTTCTAATAAATTTATTCCTTTTTCTACCACTAACTCCAAATTGGGAGCCGGTTTCCACAGAATATACAGACGTACAACCAAACAAAAATTACGTCTCTCTTTTTATAAGGAGAATTGCGAAGGTCGGAGTAATGTTGCAATCAAATCAAGCAGAGGAGTATCTTCTTTGCAAACCCAACAAGAACATGGAACCTGGGAAGAACCAGATATTCGTAGTGACAGTGACGATGAGTATGCTGACGAAGAAGATAAAAGCCTTGGATTTAAAAATGATGGGGAGCAGGAAGAGACAGAGACGCAGGACGAGTATGAGGAGCGTATTAAGAAAGAGGTTGAACGACTTTTAAAACCAGAAGAACTAGAAATACTGCAACAGAATATAACTCCTAATTTGGAAAAAATATCATCTGAAAAATGGAGCCCGCTGCACTCTCTTGGCTTATCATTTCAGATTTTTAGTATGGACAAGCTTCTTGAAAGTGGTCATGATATTGATTTCGTCAATAAGGAAGGTCTCACTGCACTTCATAAGGCGGTTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCCAGGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTCAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATCAAATACAATGTTGATGTCAATGTGGCAGATAATGAAGGTTGGACCCCATTGCATGTTGCCGTTCAAAGCCGGAATAGAGATATAGCGAAAATTTTGTTAGCCAATGGCGCAGATAGATCGATAGAAAATAAGGATGGGAAAACAGCACTGGATATAAGTATATGTTATGGAAAAGACTTCATGTCTTATGACCTTGCTAGATTAATTAAGATAGGTCCAGGCAACTGA

Protein sequence

>Msa0248560

MDCLATSPVLSNKFIPFSTTNSKLGAGFHRIYRRTTKQKLRLSFYKENCEGRSNVAIKSSRGVSSLQTQQEHGTWEEPDIRSDSDDEYADEEDKSLGFKNDGEQEETETQDEYEERIKKEVERLLKPEELEILQQNITPNLEKISSEKWSPLHSLGLSFQIFSMDKLLESGHDIDFVNKEGLTALHKAVIGKKEAVISHLLRKGASPHVQDKDGATPLHYAVQVGAKQTVKLLIKYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLANGADRSIENKDGKTALDISICYGKDFMSYDLARLIKIGPGN*