AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0946650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0946650 MtrunA17_Chr7g0249581 96.398 472 10 3 3 471 4 471 0.0 916
Msa0946650 MtrunA17_Chr1g0172361 41.989 362 203 5 96 457 62 416 7.49e-85 267
Msa0946650 MtrunA17_Chr7g0271771 40.625 352 205 2 107 457 116 464 1.31e-79 255
Msa0946650 MtrunA17_Chr7g0270701 31.445 353 221 8 119 457 49 394 2.37e-40 149
Msa0946650 MtrunA17_Chr7g0268791 34.717 265 168 4 192 455 134 394 1.81e-38 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0946650 AT5G36170.1 77.037 405 89 1 67 471 56 456 0.0 655
Msa0946650 AT5G36170.2 77.228 404 88 1 68 471 56 455 0.0 655
Msa0946650 AT5G36170.3 75.410 305 71 1 67 371 56 356 6.05e-168 479
Msa0946650 AT5G36170.4 75.658 304 70 1 68 371 56 355 1.49e-167 478
Msa0946650 AT1G56350.1 37.500 384 225 3 74 457 103 471 8.93e-78 251
Msa0946650 AT3G57190.1 35.405 370 224 6 96 463 47 403 3.08e-68 224
Msa0946650 AT3G62910.1 31.629 313 209 4 144 455 89 397 5.28e-42 154
Msa0946650 AT2G47020.4 30.769 312 206 6 152 457 26 333 3.58e-33 129
Msa0946650 AT2G47020.1 30.769 312 206 6 152 457 91 398 8.15e-33 129
Msa0946650 AT2G47020.3 31.716 268 152 4 218 457 160 424 1.60e-29 120
Msa0946650 AT2G47020.5 35.443 158 100 1 218 375 160 315 4.13e-24 103

Find 133 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTGACTCAACTTCTTTC+TGG 0.090679 6_3:+28492565 Msa0946650:CDS
CGAAGACCTTTGGAATTAAA+AGG 0.167157 6_3:-28493405 None:intergenic
ATCATCTGGTCTACAATTAT+TGG 0.231180 6_3:+28491874 Msa0946650:CDS
AGTTCAGTTCATTCCGGATA+TGG 0.256233 6_3:-28490329 None:intergenic
AAGCATCTTGTAGCTCCTTT+TGG 0.269602 6_3:+28491924 Msa0946650:CDS
TATGCGTATGGGTATTTGTC+TGG 0.283774 6_3:+28493348 Msa0946650:CDS
TTTATAAGACCTAAAGGTTT+TGG 0.285620 6_3:-28490472 None:intergenic
CTAATCTCCAAGTCCTCTTC+TGG 0.294453 6_3:-28493601 None:intergenic
ACTGGGCGGACATGCTTCTT+AGG 0.312508 6_3:+28493217 Msa0946650:CDS
TCAACATTCAAAGATTCTTC+TGG 0.317964 6_3:-28493574 None:intergenic
CTCTGTTATGGATGGAGAAT+TGG 0.333602 6_3:+28494228 Msa0946650:CDS
GAAATGGAATCCGTTGATAA+AGG 0.334721 6_3:+28492484 Msa0946650:CDS
CTGTAACCGCCAAAACCTTT+AGG 0.353496 6_3:+28490463 Msa0946650:CDS
TCATACTATACTTGTGTTTG+AGG 0.356154 6_3:-28494270 None:intergenic
ACATCCTTTACTAGTTTGTA+TGG 0.386451 6_3:-28494175 None:intergenic
TCCATAACAGAGGTGATATC+TGG 0.399290 6_3:-28494217 None:intergenic
AGTTATGCTGACAGAGGAAA+TGG 0.399496 6_3:+28492468 Msa0946650:CDS
ACCAGATATCACCTCTGTTA+TGG 0.400399 6_3:+28494216 Msa0946650:CDS
GGACGTAGTGAAGGCTGAAT+GGG 0.404216 6_3:+28494123 Msa0946650:CDS
TCACTCAGTTCAGTTCATTC+CGG 0.410950 6_3:-28490335 None:intergenic
AGAATCAATTGAGCAGCGTT+GGG 0.411480 6_3:+28490736 Msa0946650:CDS
GAAGACCTTTGGAATTAAAA+GGG 0.418012 6_3:-28493404 None:intergenic
GAAGAAGAAGAGGGAGATTG+TGG 0.418072 6_3:-28490510 None:intergenic
CGAAAGAGTCTGTTGAGCTT+TGG 0.418363 6_3:-28491957 None:intergenic
TATCGTTCCTCTCCATTGAA+TGG 0.420444 6_3:-28494335 None:intergenic
TTCATTCCGGATATGGTTAG+TGG 0.420969 6_3:-28490322 None:intergenic
CTAGTAAAGGATGTAAGAAC+AGG 0.421372 6_3:+28494184 Msa0946650:CDS
TTCTCAAGAGCGGGTGGAAA+AGG 0.423998 6_3:+28493625 Msa0946650:CDS
TATTACCTGACGAAGACCTT+TGG 0.425839 6_3:-28493415 None:intergenic
ATTGAGCAGCGTTGGGGAAG+GGG 0.428787 6_3:+28490743 Msa0946650:CDS
TGAAATTCCAGAAGAGGACT+TGG 0.431477 6_3:+28493594 Msa0946650:CDS
ATGCGTATGGGTATTTGTCT+GGG 0.432886 6_3:+28493349 Msa0946650:CDS
TTCCTTTACCTCCCATTCAA+TGG 0.441158 6_3:+28494323 Msa0946650:three_prime_UTR
CAGCGTTGGGGAAGGGGAGG+AGG 0.451858 6_3:+28490749 Msa0946650:CDS
GGGACGTAGTGAAGGCTGAA+TGG 0.461610 6_3:+28494122 Msa0946650:CDS
AAATGGAATCCGTTGATAAA+GGG 0.463579 6_3:+28492485 Msa0946650:CDS
GGGTATTTGTCTGGGGAGAA+AGG 0.464816 6_3:+28493357 Msa0946650:CDS
GTACCAGGTGATAGAGGAAA+AGG 0.465544 6_3:-28490600 None:intergenic
AAATCTCTTGGAGAAGAAGC+TGG 0.467752 6_3:+28493291 Msa0946650:CDS
TTCAATGGAGAGGAACGATA+TGG 0.469674 6_3:+28494338 Msa0946650:three_prime_UTR
TAATTCCAAAGGTCTTCGTC+AGG 0.477891 6_3:+28493410 Msa0946650:CDS
TCTTAGGATGTATGTGAGAT+GGG 0.480416 6_3:+28493233 Msa0946650:CDS
ATCTCTATTACAGCAGGTGC+GGG 0.480542 6_3:+28492613 Msa0946650:CDS
AAGGAACACATCGCATTGTT+CGG 0.481188 6_3:+28493376 Msa0946650:CDS
GAGAATCAATTGAGCAGCGT+TGG 0.482723 6_3:+28490735 Msa0946650:CDS
CGAATTACACATATCCCAAC+TGG 0.485827 6_3:+28493682 Msa0946650:CDS
CTCCATTGAATGGGAGGTAA+AGG 0.485994 6_3:-28494325 None:intergenic
CCTTTACTAGTTTGTATGGA+TGG 0.486525 6_3:-28494171 None:intergenic
ATCGTTCCTCTCCATTGAAT+GGG 0.486855 6_3:-28494334 None:intergenic
AGAGTGGTTGAGAAATCTCT+TGG 0.487977 6_3:+28493279 Msa0946650:CDS
GTTGAAGGCCGTTATGCGTA+TGG 0.488122 6_3:+28493336 Msa0946650:CDS
TGGTTGTTTATAAGACCTAA+AGG 0.499155 6_3:-28490478 None:intergenic
GCGTAACCACTAACCATATC+CGG 0.500404 6_3:+28490316 Msa0946650:five_prime_UTR
AGAAGGACGATGAGAGAGAG+TGG 0.500748 6_3:-28490577 None:intergenic
AGATGCTTCCTCTTCCAACT+TGG 0.503424 6_3:-28491909 None:intergenic
TCTGCCACCATCGAAGTTGA+AGG 0.503655 6_3:+28493321 Msa0946650:CDS
GAATGTTGAAATTCCAGAAG+AGG 0.507034 6_3:+28493588 Msa0946650:CDS
GAGATTAGCTTCTCAAGAGC+GGG 0.508195 6_3:+28493616 Msa0946650:CDS
TCAACAGACTCTTTCGACAT+TGG 0.508700 6_3:+28491964 Msa0946650:CDS
TTTGGCTCGGTCGTCCCAAA+AGG 0.511359 6_3:-28491939 None:intergenic
AGTAGTTCTGTTTGCGACGC+CGG 0.512771 6_3:+28490713 Msa0946650:intron
CGATATGGTTGTTGTGTCAT+GGG 0.519827 6_3:+28494353 Msa0946650:three_prime_UTR
AAAGAGATTAGAGAATCATC+TGG 0.520355 6_3:+28491860 Msa0946650:CDS
GGAGCAAGAACTTGCCAAGT+TGG 0.521085 6_3:+28491895 Msa0946650:CDS
GAAACAGTACCAGGTGATAG+AGG 0.524057 6_3:-28490606 None:intergenic
TTCATAAAGCCCTTTATCAA+CGG 0.525372 6_3:-28492494 None:intergenic
GGTGTCACTCTTCGCTGCAC+AGG 0.525481 6_3:+28493703 Msa0946650:CDS
AATTGAGCAGCGTTGGGGAA+GGG 0.525505 6_3:+28490742 Msa0946650:CDS
AAAGATTCTTCTGGAAGAAG+AGG 0.527140 6_3:-28493565 None:intergenic
CAATTGAGCAGCGTTGGGGA+AGG 0.530209 6_3:+28490741 Msa0946650:CDS
AGCGAAGAGTGACACCAGTT+GGG 0.530416 6_3:-28493696 None:intergenic
CCATCCATACAAACTAGTAA+AGG 0.535045 6_3:+28494171 Msa0946650:CDS
CTGAATTTAAACAGATTCGA+GGG 0.536188 6_3:+28494101 Msa0946650:CDS
AGAACTTGCCAAGTTGGAAG+AGG 0.536733 6_3:+28491901 Msa0946650:CDS
TTTGAGGTAAGATTTGATGA+AGG 0.537806 6_3:-28494254 None:intergenic
TGCGGGAGGTACTGATGCAC+AGG 0.539451 6_3:+28492630 Msa0946650:CDS
TCTGGTCCTTACGACAAAGA+AGG 0.540896 6_3:+28492583 Msa0946650:CDS
ACGCTGCTCAATTGATTCTC+CGG 0.541033 6_3:-28490732 None:intergenic
AAGAGATTTCTCAACCACTC+TGG 0.542572 6_3:-28493277 None:intergenic
GGAGATTGTGGAATGAGAAA+TGG 0.542685 6_3:-28490498 None:intergenic
ACTGAATTTAAACAGATTCG+AGG 0.544820 6_3:+28494100 Msa0946650:CDS
TTGAGGTAAGATTTGATGAA+GGG 0.548656 6_3:-28494253 None:intergenic
GAAGCGATTCGTTTAAGCCA+TGG 0.551280 6_3:+28490404 Msa0946650:exon
GAGTCTGTTGAGCTTTGGCT+CGG 0.551498 6_3:-28491952 None:intergenic
ACAAGCGATTCCGCACTTCA+AGG 0.554845 6_3:+28490780 Msa0946650:CDS
ACAAATACCCATACGCATAA+CGG 0.557181 6_3:-28493344 None:intergenic
GCTGTTATCTCTATTACAGC+AGG 0.558128 6_3:+28492607 Msa0946650:CDS
CAGCGAAGAGTGACACCAGT+TGG 0.559310 6_3:-28493697 None:intergenic
TGGTGTAGTAGCAGCACAGA+GGG 0.560056 6_3:-28490440 None:intergenic
TTCTTAGGATGTATGTGAGA+TGG 0.564227 6_3:+28493232 Msa0946650:CDS
ACAGCACCTTCTTTGTCGTA+AGG 0.565785 6_3:-28492589 None:intergenic
GAGCAGCGTTGGGGAAGGGG+AGG 0.570391 6_3:+28490746 Msa0946650:CDS
AACTGAATAAGTCAATTGAT+CGG 0.574053 6_3:+28492539 Msa0946650:CDS
GATATCACCTCTGTTATGGA+TGG 0.574268 6_3:+28494220 Msa0946650:CDS
ACGATATGGTTGTTGTGTCA+TGG 0.576481 6_3:+28494352 Msa0946650:three_prime_UTR
TTGAAGGCCGTTATGCGTAT+GGG 0.580211 6_3:+28493337 Msa0946650:CDS
AAGACCTTTGGAATTAAAAG+GGG 0.580978 6_3:-28493403 None:intergenic
GGTGATAGAGGAAAAGGAGA+AGG 0.593572 6_3:-28490594 None:intergenic
GATTCGAGGGGACGTAGTGA+AGG 0.600180 6_3:+28494114 Msa0946650:CDS
TGCGTATGGGTATTTGTCTG+GGG 0.601450 6_3:+28493350 Msa0946650:CDS
GGAGATTAGCTTCTCAAGAG+CGG 0.603522 6_3:+28493615 Msa0946650:CDS
AGTATGACAATGTCTACAAG+TGG 0.605383 6_3:+28494286 Msa0946650:CDS
AAAGATAAGAAAGGAAAATG+TGG 0.609177 6_3:-28490546 None:intergenic
TCAAGAGCGGGTGGAAAAGG+AGG 0.611511 6_3:+28493628 Msa0946650:CDS
TATCTCTATTACAGCAGGTG+CGG 0.613713 6_3:+28492612 Msa0946650:CDS
ATAACGGCCTTCAACTTCGA+TGG 0.618031 6_3:-28493328 None:intergenic
GCTCAATGACTACAAAACTC+AGG 0.619358 6_3:+28492012 Msa0946650:CDS
TTACCTCCCATTCAATGGAG+AGG 0.623862 6_3:+28494328 Msa0946650:three_prime_UTR
TGGGATATGTGTAATTCGAA+CGG 0.626225 6_3:-28493677 None:intergenic
TCGTTTGAAAGCGAAGCTGT+TGG 0.632187 6_3:+28494054 Msa0946650:CDS
ATTAGCTTCTCAAGAGCGGG+TGG 0.632510 6_3:+28493619 Msa0946650:CDS
AGGAGGTCAGAATGTTAACA+AGG 0.634298 6_3:+28493645 Msa0946650:CDS
GATGAGAGAGAGTGGTGGTG+CGG 0.635635 6_3:-28490569 None:intergenic
GTATGACAATGTCTACAAGT+GGG 0.640154 6_3:+28494287 Msa0946650:CDS
GTTCCTCTCCATTGAATGGG+AGG 0.640753 6_3:-28494331 None:intergenic
ACGGCCTTCAACTTCGATGG+TGG 0.641189 6_3:-28493325 None:intergenic
GAATCAATTGAGCAGCGTTG+GGG 0.643618 6_3:+28490737 Msa0946650:CDS
AGGGTGTGAAACAACCTCCA+TGG 0.644851 6_3:-28490421 None:intergenic
GACGTAGTGAAGGCTGAATG+GGG 0.649092 6_3:+28494124 Msa0946650:CDS
GCGATTCGTTTAAGCCATGG+AGG 0.657249 6_3:+28490407 Msa0946650:exon
TCTATTACAGCAGGTGCGGG+AGG 0.657478 6_3:+28492616 Msa0946650:CDS
AACAATAGTTATGCTGACAG+AGG 0.660154 6_3:+28492462 Msa0946650:CDS
TATGACAATGTCTACAAGTG+GGG 0.662328 6_3:+28494288 Msa0946650:CDS
TGAATTTAAACAGATTCGAG+GGG 0.676303 6_3:+28494102 Msa0946650:CDS
AGGACGATGAGAGAGAGTGG+TGG 0.676872 6_3:-28490574 None:intergenic
CAAGCAGTTACCTTGAAGTG+CGG 0.679223 6_3:-28490790 None:intergenic
TAGTAAAGGATGTAAGAACA+GGG 0.680485 6_3:+28494185 Msa0946650:CDS
CAATTCTCCATCCATAACAG+AGG 0.681172 6_3:-28494227 None:intergenic
GTGGTGCGGAAAGATAAGAA+AGG 0.682965 6_3:-28490555 None:intergenic
CTTAGGATGTATGTGAGATG+GGG 0.691263 6_3:+28493234 Msa0946650:CDS
ATTTCCAGTGCAGGACTGGG+CGG 0.700162 6_3:+28493203 Msa0946650:intron
GTGGTGTAGTAGCAGCACAG+AGG 0.714809 6_3:-28490441 None:intergenic
ACAGAGATACAAAACCAGAG+TGG 0.753790 6_3:+28493263 Msa0946650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAGTTTTCTTATATAAAA+AGG - chr6_3:28490292-28490311 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGTGTTAA+TGG + chr6_3:28490683-28490702 Msa0946650:intron 10.0%
!!! AATTTTTTTTTTTCAACTAT+GGG + chr6_3:28491244-28491263 Msa0946650:intron 10.0%
!!! CTTACTTTTTTTTTAAATTA+CGG - chr6_3:28491438-28491457 None:intergenic 10.0%
!! ATCTATACTAATAAATAAAT+TGG + chr6_3:28492092-28492111 Msa0946650:intron 10.0%
!!! CAATTTTTTTTTTTCAACTA+TGG + chr6_3:28491243-28491262 Msa0946650:intron 15.0%
!!! ATTTTTTTTTTTCAACTATG+GGG + chr6_3:28491245-28491264 Msa0946650:intron 15.0%
!!! AACTTTTCTTTTTTAAATCA+CGG + chr6_3:28491323-28491342 Msa0946650:intron 15.0%
!!! GATATAATTCTGAATATTTT+AGG + chr6_3:28492038-28492057 Msa0946650:intron 15.0%
!!! TTTTTGTTTCTAAATCTTTA+CGG - chr6_3:28492161-28492180 None:intergenic 15.0%
!! TTAGAAACAAAAATTAATGA+AGG + chr6_3:28492168-28492187 Msa0946650:intron 15.0%
!! TTATTGTCTGATATATTATA+CGG + chr6_3:28492726-28492745 Msa0946650:intron 15.0%
!! TCTTATATAAAAAGGTTGTT+TGG - chr6_3:28490284-28490303 None:intergenic 20.0%
!! AAAAAGATCTCAAATAAAGT+AGG - chr6_3:28490834-28490853 None:intergenic 20.0%
!!! ATTTTAAAGCTGAAAATCAA+GGG - chr6_3:28491170-28491189 None:intergenic 20.0%
!!! TATTTTAAAGCTGAAAATCA+AGG - chr6_3:28491171-28491190 None:intergenic 20.0%
!! GAAAATAAATTGCAATCATT+TGG - chr6_3:28491590-28491609 None:intergenic 20.0%
!! TTCTTTAGATTTAAGTCATT+CGG + chr6_3:28491653-28491672 Msa0946650:intron 20.0%
!! ATGAAAAAACAAGTTCATTA+TGG - chr6_3:28492683-28492702 None:intergenic 20.0%
!!! CAATAAATTTTTTACCTCTA+GGG - chr6_3:28492712-28492731 None:intergenic 20.0%
!!! ACAATAAATTTTTTACCTCT+AGG - chr6_3:28492713-28492732 None:intergenic 20.0%
!! TATTGTCTGATATATTATAC+GGG + chr6_3:28492727-28492746 Msa0946650:intron 20.0%
!!! ACATGACTATTTTTTAGAAA+TGG - chr6_3:28493007-28493026 None:intergenic 20.0%
!!! TTTCTAAAAAATAGTCATGT+TGG + chr6_3:28493007-28493026 Msa0946650:intron 20.0%
!!! TAATAACTTACTTTTTTGGT+TGG + chr6_3:28493433-28493452 Msa0946650:intron 20.0%
!! TTTATAAGACCTAAAGGTTT+TGG - chr6_3:28490475-28490494 None:intergenic 25.0%
! AAAGATAAGAAAGGAAAATG+TGG - chr6_3:28490549-28490568 None:intergenic 25.0%
! TACTAATATCATAACATCAC+CGG - chr6_3:28490908-28490927 None:intergenic 25.0%
! CTAATGTGCATAATTTAAAG+CGG + chr6_3:28491144-28491163 Msa0946650:intron 25.0%
! CAGTATATGCTTATACAAAA+GGG - chr6_3:28491698-28491717 None:intergenic 25.0%
! TATACTGCATCATAATGTAT+CGG + chr6_3:28491711-28491730 Msa0946650:intron 25.0%
!! ACAAATCTATCTCTCTTTTA+AGG + chr6_3:28492340-28492359 Msa0946650:intron 25.0%
! AACTGAATAAGTCAATTGAT+CGG + chr6_3:28492539-28492558 Msa0946650:CDS 25.0%
!!! AGATAAATTCTAGTTTTTCC+TGG - chr6_3:28492781-28492800 None:intergenic 25.0%
! GAAAAAAAAACAACATAGCA+AGG - chr6_3:28493035-28493054 None:intergenic 25.0%
!! TTTTCTATTTGCGTTTTTCT+TGG + chr6_3:28493133-28493152 Msa0946650:intron 25.0%
!!! CAGGTAATAACTTACTTTTT+TGG + chr6_3:28493429-28493448 Msa0946650:intron 25.0%
! CTGTTCAAATAATACAACAT+GGG - chr6_3:28493518-28493537 None:intergenic 25.0%
! TCTGTTCAAATAATACAACA+TGG - chr6_3:28493519-28493538 None:intergenic 25.0%
!!! TCTGTTTTTATTCTTCTGAA+AGG + chr6_3:28493744-28493763 Msa0946650:intron 25.0%
!!! CTGTTTTTATTCTTCTGAAA+GGG + chr6_3:28493745-28493764 Msa0946650:intron 25.0%
!!! CATTTCAAATTGAGTTGATA+AGG - chr6_3:28493803-28493822 None:intergenic 25.0%
! TAGTGATAAAAAGTAGTTTG+TGG + chr6_3:28494465-28494484 Msa0946650:three_prime_UTR 25.0%
TGGTTGTTTATAAGACCTAA+AGG - chr6_3:28490481-28490500 None:intergenic 30.0%
!! ATATTGATTCGTTCACATTC+TGG - chr6_3:28490960-28490979 None:intergenic 30.0%
TTAAAATAAGTCGTCATGAC+TGG + chr6_3:28491183-28491202 Msa0946650:intron 30.0%
TGGTCTATATCATTCCTTAA+GGG - chr6_3:28491503-28491522 None:intergenic 30.0%
GAATAAGTAGATTTGCACAT+TGG + chr6_3:28491615-28491634 Msa0946650:intron 30.0%
GCAGTATATGCTTATACAAA+AGG - chr6_3:28491699-28491718 None:intergenic 30.0%
ATACTGCATCATAATGTATC+GGG + chr6_3:28491712-28491731 Msa0946650:intron 30.0%
ATAGTCGCTAAAATCAATTC+CGG + chr6_3:28491750-28491769 Msa0946650:intron 30.0%
TACTTCAAAACAAACCAATC+CGG - chr6_3:28491772-28491791 None:intergenic 30.0%
!!! GTTTGTTTTGAAGTATCACT+TGG + chr6_3:28491777-28491796 Msa0946650:intron 30.0%
AAAGAGATTAGAGAATCATC+TGG + chr6_3:28491860-28491879 Msa0946650:CDS 30.0%
ATCATCTGGTCTACAATTAT+TGG + chr6_3:28491874-28491893 Msa0946650:CDS 30.0%
GTATAGATATTACTGCATGT+CGG - chr6_3:28492080-28492099 None:intergenic 30.0%
! CTTTTAAATGCCTTAAGAAC+TGG + chr6_3:28492135-28492154 Msa0946650:intron 30.0%
ACCTACATTCATTGTAATGA+AGG - chr6_3:28492430-28492449 None:intergenic 30.0%
ATTACAATGAATGTAGGTTG+AGG + chr6_3:28492432-28492451 Msa0946650:intron 30.0%
! AAATGGAATCCGTTGATAAA+GGG + chr6_3:28492485-28492504 Msa0946650:CDS 30.0%
TTCATAAAGCCCTTTATCAA+CGG - chr6_3:28492497-28492516 None:intergenic 30.0%
!!! AATTTTTTACCTCTAGGGAT+AGG - chr6_3:28492707-28492726 None:intergenic 30.0%
GATATATTATACGGGTAGAA+CGG + chr6_3:28492735-28492754 Msa0946650:intron 30.0%
! CAACATTTTTAAACTTCTCC+AGG + chr6_3:28492862-28492881 Msa0946650:intron 30.0%
CTGTCATAAGCATTTAAATC+TGG + chr6_3:28492928-28492947 Msa0946650:intron 30.0%
!! AAGACCTTTGGAATTAAAAG+GGG - chr6_3:28493406-28493425 None:intergenic 30.0%
!! GAAGACCTTTGGAATTAAAA+GGG - chr6_3:28493407-28493426 None:intergenic 30.0%
!! TCTGTGCATTTGATAATGAA+AGG - chr6_3:28493480-28493499 None:intergenic 30.0%
TCAACATTCAAAGATTCTTC+TGG - chr6_3:28493577-28493596 None:intergenic 30.0%
GAAGAATAAAAACAGAGCAA+AGG - chr6_3:28493740-28493759 None:intergenic 30.0%
!! TTTTTATTCTTCTGAAAGGG+AGG + chr6_3:28493748-28493767 Msa0946650:intron 30.0%
GATTTAATAACCTTCTCTAC+AGG + chr6_3:28493824-28493843 Msa0946650:intron 30.0%
GTGTTAGTATGGATCTAATT+CGG + chr6_3:28493935-28493954 Msa0946650:intron 30.0%
ACTGAATTTAAACAGATTCG+AGG + chr6_3:28494100-28494119 Msa0946650:CDS 30.0%
CTGAATTTAAACAGATTCGA+GGG + chr6_3:28494101-28494120 Msa0946650:CDS 30.0%
TGAATTTAAACAGATTCGAG+GGG + chr6_3:28494102-28494121 Msa0946650:CDS 30.0%
! ACATCCTTTACTAGTTTGTA+TGG - chr6_3:28494178-28494197 None:intergenic 30.0%
TAGTAAAGGATGTAAGAACA+GGG + chr6_3:28494185-28494204 Msa0946650:CDS 30.0%
TTGAGGTAAGATTTGATGAA+GGG - chr6_3:28494256-28494275 None:intergenic 30.0%
! TTTGAGGTAAGATTTGATGA+AGG - chr6_3:28494257-28494276 None:intergenic 30.0%
TCATACTATACTTGTGTTTG+AGG - chr6_3:28494273-28494292 None:intergenic 30.0%
!! ATAAGACCTAAAGGTTTTGG+CGG - chr6_3:28490472-28490491 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+GGG - chr6_3:28490522-28490541 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGAAG+AGG - chr6_3:28490523-28490542 None:intergenic 35.0%
AATAGAATCGAAACAGTACC+AGG - chr6_3:28490618-28490637 None:intergenic 35.0%
ATTCATACACCAATCATAGC+CGG + chr6_3:28490886-28490905 Msa0946650:intron 35.0%
TTGTACTGAACAGTGTATTG+TGG - chr6_3:28490987-28491006 None:intergenic 35.0%
!! AACTATGGGGAAGTACTTAA+GGG + chr6_3:28491258-28491277 Msa0946650:intron 35.0%
TGTTTGGATTGAGTTTAGGA+GGG + chr6_3:28491283-28491302 Msa0946650:intron 35.0%
GTGGTCTATATCATTCCTTA+AGG - chr6_3:28491504-28491523 None:intergenic 35.0%
! TTGCAGATTTTTATTCGCTG+AGG + chr6_3:28491807-28491826 Msa0946650:intron 35.0%
! AGATTTTTATTCGCTGAGGA+AGG + chr6_3:28491811-28491830 Msa0946650:intron 35.0%
CTTTCTTGCACTTAATTAGC+AGG - chr6_3:28492229-28492248 None:intergenic 35.0%
TAGCCATGTTTATAAGTCTG+CGG - chr6_3:28492290-28492309 None:intergenic 35.0%
GATTGGTATAAGTGAAGAAG+TGG - chr6_3:28492388-28492407 None:intergenic 35.0%
ATAGTGGCACATGATTAGAT+TGG - chr6_3:28492405-28492424 None:intergenic 35.0%
! AATCTAATCATGTGCCACTA+TGG + chr6_3:28492404-28492423 Msa0946650:intron 35.0%
GCCTTCATTACAATGAATGT+AGG + chr6_3:28492426-28492445 Msa0946650:intron 35.0%
AACAATAGTTATGCTGACAG+AGG + chr6_3:28492462-28492481 Msa0946650:CDS 35.0%
! GAAATGGAATCCGTTGATAA+AGG + chr6_3:28492484-28492503 Msa0946650:CDS 35.0%
GTAAATAGCTATCCATGTAC+AGG + chr6_3:28492652-28492671 Msa0946650:intron 35.0%
ATTATGGTAACACCTGTACA+TGG - chr6_3:28492667-28492686 None:intergenic 35.0%
! TTTTTCATTCCTATCCCTAG+AGG + chr6_3:28492695-28492714 Msa0946650:intron 35.0%
TGAACAAATTTCAGAAAGCC+TGG - chr6_3:28492883-28492902 None:intergenic 35.0%
CTTGGAATATGAGTACTTTG+TGG + chr6_3:28493151-28493170 Msa0946650:intron 35.0%
TTCTTAGGATGTATGTGAGA+TGG + chr6_3:28493232-28493251 Msa0946650:CDS 35.0%
TCTTAGGATGTATGTGAGAT+GGG + chr6_3:28493233-28493252 Msa0946650:CDS 35.0%
ACAAATACCCATACGCATAA+CGG - chr6_3:28493347-28493366 None:intergenic 35.0%
!! CAATCCCCTTTTAATTCCAA+AGG + chr6_3:28493399-28493418 Msa0946650:CDS 35.0%
!! CGAAGACCTTTGGAATTAAA+AGG - chr6_3:28493408-28493427 None:intergenic 35.0%
! TTTGAACAGACAAGCTTTTC+TGG + chr6_3:28493529-28493548 Msa0946650:intron 35.0%
! AAAGATTCTTCTGGAAGAAG+AGG - chr6_3:28493568-28493587 None:intergenic 35.0%
GAATGTTGAAATTCCAGAAG+AGG + chr6_3:28493588-28493607 Msa0946650:CDS 35.0%
TGGGATATGTGTAATTCGAA+CGG - chr6_3:28493680-28493699 None:intergenic 35.0%
ATAACAGAAACCTGTAGAGA+AGG - chr6_3:28493837-28493856 None:intergenic 35.0%
CCATACTAACACAAAAGAAG+TGG - chr6_3:28493927-28493946 None:intergenic 35.0%
! CCACTTCTTTTGTGTTAGTA+TGG + chr6_3:28493924-28493943 Msa0946650:intron 35.0%
! CCTTTACTAGTTTGTATGGA+TGG - chr6_3:28494174-28494193 None:intergenic 35.0%
CCATCCATACAAACTAGTAA+AGG + chr6_3:28494171-28494190 Msa0946650:CDS 35.0%
CTAGTAAAGGATGTAAGAAC+AGG + chr6_3:28494184-28494203 Msa0946650:CDS 35.0%
AGTATGACAATGTCTACAAG+TGG + chr6_3:28494286-28494305 Msa0946650:CDS 35.0%
GTATGACAATGTCTACAAGT+GGG + chr6_3:28494287-28494306 Msa0946650:CDS 35.0%
TATGACAATGTCTACAAGTG+GGG + chr6_3:28494288-28494307 Msa0946650:CDS 35.0%
TTCATTCCGGATATGGTTAG+TGG - chr6_3:28490325-28490344 None:intergenic 40.0%
AGTTCAGTTCATTCCGGATA+TGG - chr6_3:28490332-28490351 None:intergenic 40.0%
TCACTCAGTTCAGTTCATTC+CGG - chr6_3:28490338-28490357 None:intergenic 40.0%
GGAGATTGTGGAATGAGAAA+TGG - chr6_3:28490501-28490520 None:intergenic 40.0%
AGAATCAATTGAGCAGCGTT+GGG + chr6_3:28490736-28490755 Msa0946650:CDS 40.0%
! ATAACATCACCGGCTATGAT+TGG - chr6_3:28490898-28490917 None:intergenic 40.0%
!! CAACTATGGGGAAGTACTTA+AGG + chr6_3:28491257-28491276 Msa0946650:intron 40.0%
! GAAGTACTTAAGGGTGTGTT+TGG + chr6_3:28491267-28491286 Msa0946650:intron 40.0%
GGTGTGTTTGGATTGAGTTT+AGG + chr6_3:28491279-28491298 Msa0946650:intron 40.0%
GTGTTTGGATTGAGTTTAGG+AGG + chr6_3:28491282-28491301 Msa0946650:intron 40.0%
GTTTGGATTGAGTTTAGGAG+GGG + chr6_3:28491284-28491303 Msa0946650:intron 40.0%
TGTGTTTGGATGGAGGATTT+AGG - chr6_3:28491480-28491499 None:intergenic 40.0%
! TCATTCCTTAAGGGTGTGTT+TGG - chr6_3:28491494-28491513 None:intergenic 40.0%
!! TGCACATTGGTGTTATCATG+AGG + chr6_3:28491628-28491647 Msa0946650:intron 40.0%
TACAAAAGGGAGAGAGAAAC+AGG - chr6_3:28491685-28491704 None:intergenic 40.0%
GTATCGGGTGAATCAATTAG+AGG + chr6_3:28491727-28491746 Msa0946650:intron 40.0%
CGCTAAAATCAATTCCGGAT+TGG + chr6_3:28491755-28491774 Msa0946650:intron 40.0%
! AAGCATCTTGTAGCTCCTTT+TGG + chr6_3:28491924-28491943 Msa0946650:CDS 40.0%
! AGCATCTTGTAGCTCCTTTT+GGG + chr6_3:28491925-28491944 Msa0946650:CDS 40.0%
TCAACAGACTCTTTCGACAT+TGG + chr6_3:28491964-28491983 Msa0946650:CDS 40.0%
GCTCAATGACTACAAAACTC+AGG + chr6_3:28492012-28492031 Msa0946650:CDS 40.0%
ATCTTTACGGCCAGTTCTTA+AGG - chr6_3:28492148-28492167 None:intergenic 40.0%
!!! TGCGGGTGGCTATTTTTATT+TGG - chr6_3:28492272-28492291 None:intergenic 40.0%
AGCCATGTTTATAAGTCTGC+GGG - chr6_3:28492289-28492308 None:intergenic 40.0%
TAATGTTCACGATGCTTCCA+CGG + chr6_3:28492311-28492330 Msa0946650:intron 40.0%
!! GATAGATTTGTTGTACACCG+TGG - chr6_3:28492331-28492350 None:intergenic 40.0%
CATTGTAATGAAGGCCATAG+TGG - chr6_3:28492421-28492440 None:intergenic 40.0%
AGTTATGCTGACAGAGGAAA+TGG + chr6_3:28492468-28492487 Msa0946650:CDS 40.0%
GCTGTTATCTCTATTACAGC+AGG + chr6_3:28492607-28492626 Msa0946650:CDS 40.0%
TATCTCTATTACAGCAGGTG+CGG + chr6_3:28492612-28492631 Msa0946650:CDS 40.0%
ATATTATACGGGTAGAACGG+AGG + chr6_3:28492738-28492757 Msa0946650:intron 40.0%
GAACTTGTAAGTTGTATGCC+AGG + chr6_3:28492760-28492779 Msa0946650:intron 40.0%
! AGCTGCGTGAATTTTTACTC+AGG - chr6_3:28492816-28492835 None:intergenic 40.0%
ATGAGTGCACTTGTAGTATG+TGG + chr6_3:28492951-28492970 Msa0946650:intron 40.0%
TGAGTGCACTTGTAGTATGT+GGG + chr6_3:28492952-28492971 Msa0946650:intron 40.0%
CAACTTACTATTTCCAGTGC+AGG + chr6_3:28493194-28493213 Msa0946650:intron 40.0%
CTTAGGATGTATGTGAGATG+GGG + chr6_3:28493234-28493253 Msa0946650:CDS 40.0%
ACAGAGATACAAAACCAGAG+TGG + chr6_3:28493263-28493282 Msa0946650:CDS 40.0%
AAGAGATTTCTCAACCACTC+TGG - chr6_3:28493280-28493299 None:intergenic 40.0%
AGAGTGGTTGAGAAATCTCT+TGG + chr6_3:28493279-28493298 Msa0946650:CDS 40.0%
AAATCTCTTGGAGAAGAAGC+TGG + chr6_3:28493291-28493310 Msa0946650:CDS 40.0%
TATGCGTATGGGTATTTGTC+TGG + chr6_3:28493348-28493367 Msa0946650:CDS 40.0%
ATGCGTATGGGTATTTGTCT+GGG + chr6_3:28493349-28493368 Msa0946650:CDS 40.0%
AAGGAACACATCGCATTGTT+CGG + chr6_3:28493376-28493395 Msa0946650:CDS 40.0%
TAATTCCAAAGGTCTTCGTC+AGG + chr6_3:28493410-28493429 Msa0946650:CDS 40.0%
TATTACCTGACGAAGACCTT+TGG - chr6_3:28493418-28493437 None:intergenic 40.0%
TGAAATTCCAGAAGAGGACT+TGG + chr6_3:28493594-28493613 Msa0946650:CDS 40.0%
AGGAGGTCAGAATGTTAACA+AGG + chr6_3:28493645-28493664 Msa0946650:CDS 40.0%
CGAATTACACATATCCCAAC+TGG + chr6_3:28493682-28493701 Msa0946650:CDS 40.0%
ACCAGATATCACCTCTGTTA+TGG + chr6_3:28494216-28494235 Msa0946650:CDS 40.0%
TCCATAACAGAGGTGATATC+TGG - chr6_3:28494220-28494239 None:intergenic 40.0%
GATATCACCTCTGTTATGGA+TGG + chr6_3:28494220-28494239 Msa0946650:CDS 40.0%
CAATTCTCCATCCATAACAG+AGG - chr6_3:28494230-28494249 None:intergenic 40.0%
CTCTGTTATGGATGGAGAAT+TGG + chr6_3:28494228-28494247 Msa0946650:CDS 40.0%
TTCCTTTACCTCCCATTCAA+TGG + chr6_3:28494323-28494342 Msa0946650:three_prime_UTR 40.0%
ATCGTTCCTCTCCATTGAAT+GGG - chr6_3:28494337-28494356 None:intergenic 40.0%
TATCGTTCCTCTCCATTGAA+TGG - chr6_3:28494338-28494357 None:intergenic 40.0%
TTCAATGGAGAGGAACGATA+TGG + chr6_3:28494338-28494357 Msa0946650:three_prime_UTR 40.0%
ACGATATGGTTGTTGTGTCA+TGG + chr6_3:28494352-28494371 Msa0946650:three_prime_UTR 40.0%
CGATATGGTTGTTGTGTCAT+GGG + chr6_3:28494353-28494372 Msa0946650:three_prime_UTR 40.0%
GCGTAACCACTAACCATATC+CGG + chr6_3:28490316-28490335 Msa0946650:five_prime_UTR 45.0%
GAAGCGATTCGTTTAAGCCA+TGG + chr6_3:28490404-28490423 Msa0946650:exon 45.0%
!! AAAGGTTTTGGCGGTTACAG+TGG - chr6_3:28490463-28490482 None:intergenic 45.0%
CTGTAACCGCCAAAACCTTT+AGG + chr6_3:28490463-28490482 Msa0946650:CDS 45.0%
GAAGAAGAAGAGGGAGATTG+TGG - chr6_3:28490513-28490532 None:intergenic 45.0%
GTGGTGCGGAAAGATAAGAA+AGG - chr6_3:28490558-28490577 None:intergenic 45.0%
GGTGATAGAGGAAAAGGAGA+AGG - chr6_3:28490597-28490616 None:intergenic 45.0%
! TCTCCTTTTCCTCTATCACC+TGG + chr6_3:28490597-28490616 Msa0946650:CDS 45.0%
GTACCAGGTGATAGAGGAAA+AGG - chr6_3:28490603-28490622 None:intergenic 45.0%
GAAACAGTACCAGGTGATAG+AGG - chr6_3:28490609-28490628 None:intergenic 45.0%
! ACGCTGCTCAATTGATTCTC+CGG - chr6_3:28490735-28490754 None:intergenic 45.0%
GAGAATCAATTGAGCAGCGT+TGG + chr6_3:28490735-28490754 Msa0946650:CDS 45.0%
GAATCAATTGAGCAGCGTTG+GGG + chr6_3:28490737-28490756 Msa0946650:CDS 45.0%
CAAGCAGTTACCTTGAAGTG+CGG - chr6_3:28490793-28490812 None:intergenic 45.0%
GTGCACGTAAAACCCTTGTA+GGG + chr6_3:28491118-28491137 Msa0946650:intron 45.0%
GCACATTAGACTCCCTACAA+GGG - chr6_3:28491133-28491152 None:intergenic 45.0%
TGCACATTAGACTCCCTACA+AGG - chr6_3:28491134-28491153 None:intergenic 45.0%
GATTGAGTTTAGGAGGGGAA+TGG + chr6_3:28491289-28491308 Msa0946650:intron 45.0%
AGTTTAGGAGGGGAATGGAA+GGG + chr6_3:28491294-28491313 Msa0946650:intron 45.0%
GATTTAGGAGGCAAAGGGAA+GGG - chr6_3:28491465-28491484 None:intergenic 45.0%
TGGAGGATTTAGGAGGCAAA+GGG - chr6_3:28491470-28491489 None:intergenic 45.0%
ATGGAGGATTTAGGAGGCAA+AGG - chr6_3:28491471-28491490 None:intergenic 45.0%
GTTTGGATGGAGGATTTAGG+AGG - chr6_3:28491477-28491496 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG - chr6_3:28491487-28491506 None:intergenic 45.0%
TCCATCCAAACACACCCTTA+AGG + chr6_3:28491486-28491505 Msa0946650:intron 45.0%
! TCCTTAAGGGTGTGTTTGGA+TGG - chr6_3:28491490-28491509 None:intergenic 45.0%
CACAACACCGAGAGACTATA+GGG + chr6_3:28491521-28491540 Msa0946650:intron 45.0%
GATACTGCCCTATAGTCTCT+CGG - chr6_3:28491531-28491550 None:intergenic 45.0%
! AGAACTTGCCAAGTTGGAAG+AGG + chr6_3:28491901-28491920 Msa0946650:CDS 45.0%
AGATGCTTCCTCTTCCAACT+TGG - chr6_3:28491912-28491931 None:intergenic 45.0%
CGAAAGAGTCTGTTGAGCTT+TGG - chr6_3:28491960-28491979 None:intergenic 45.0%
CATGTTTATAAGTCTGCGGG+TGG - chr6_3:28492286-28492305 None:intergenic 45.0%
CACCCGCAGACTTATAAACA+TGG + chr6_3:28492284-28492303 Msa0946650:intron 45.0%
! GAGCTGACTCAACTTCTTTC+TGG + chr6_3:28492565-28492584 Msa0946650:CDS 45.0%
TCTGGTCCTTACGACAAAGA+AGG + chr6_3:28492583-28492602 Msa0946650:CDS 45.0%
ACAGCACCTTCTTTGTCGTA+AGG - chr6_3:28492592-28492611 None:intergenic 45.0%
ATCTCTATTACAGCAGGTGC+GGG + chr6_3:28492613-28492632 Msa0946650:CDS 45.0%
TGTTGAGACTTGAGACAGAG+AGG - chr6_3:28492847-28492866 None:intergenic 45.0%
GTTCATAGCCACATGTGTAC+TGG + chr6_3:28492898-28492917 Msa0946650:intron 45.0%
GTTACTTGCCAGTACACATG+TGG - chr6_3:28492909-28492928 None:intergenic 45.0%
ACTTCTCAGACTACACAGTG+CGG - chr6_3:28493086-28493105 None:intergenic 45.0%
TACTATTTCCAGTGCAGGAC+TGG + chr6_3:28493199-28493218 Msa0946650:intron 45.0%
ACTATTTCCAGTGCAGGACT+GGG + chr6_3:28493200-28493219 Msa0946650:intron 45.0%
ATAACGGCCTTCAACTTCGA+TGG - chr6_3:28493331-28493350 None:intergenic 45.0%
TTGAAGGCCGTTATGCGTAT+GGG + chr6_3:28493337-28493356 Msa0946650:CDS 45.0%
TGCGTATGGGTATTTGTCTG+GGG + chr6_3:28493350-28493369 Msa0946650:CDS 45.0%
CTAATCTCCAAGTCCTCTTC+TGG - chr6_3:28493604-28493623 None:intergenic 45.0%
!! GGAGATTAGCTTCTCAAGAG+CGG + chr6_3:28493615-28493634 Msa0946650:CDS 45.0%
!! GAGATTAGCTTCTCAAGAGC+GGG + chr6_3:28493616-28493635 Msa0946650:CDS 45.0%
GCACAAGCACAATTGCAGTT+TGG - chr6_3:28493992-28494011 None:intergenic 45.0%
TCGTTTGAAAGCGAAGCTGT+TGG + chr6_3:28494054-28494073 Msa0946650:CDS 45.0%
CTCCATTGAATGGGAGGTAA+AGG - chr6_3:28494328-28494347 None:intergenic 45.0%
TTACCTCCCATTCAATGGAG+AGG + chr6_3:28494328-28494347 Msa0946650:three_prime_UTR 45.0%
GCGATTCGTTTAAGCCATGG+AGG + chr6_3:28490407-28490426 Msa0946650:exon 50.0%
AGGGTGTGAAACAACCTCCA+TGG - chr6_3:28490424-28490443 None:intergenic 50.0%
TGGTGTAGTAGCAGCACAGA+GGG - chr6_3:28490443-28490462 None:intergenic 50.0%
AGAAGGACGATGAGAGAGAG+TGG - chr6_3:28490580-28490599 None:intergenic 50.0%
! AGTAGTTCTGTTTGCGACGC+CGG + chr6_3:28490713-28490732 Msa0946650:intron 50.0%
! AATTGAGCAGCGTTGGGGAA+GGG + chr6_3:28490742-28490761 Msa0946650:CDS 50.0%
ACAAGCGATTCCGCACTTCA+AGG + chr6_3:28490780-28490799 Msa0946650:CDS 50.0%
CGTGCACGTAAAACCCTTGT+AGG + chr6_3:28491117-28491136 Msa0946650:intron 50.0%
GAGTTTAGGAGGGGAATGGA+AGG + chr6_3:28491293-28491312 Msa0946650:intron 50.0%
GGATTTAGGAGGCAAAGGGA+AGG - chr6_3:28491466-28491485 None:intergenic 50.0%
!! CCTATAGTCTCTCGGTGTTG+TGG - chr6_3:28491523-28491542 None:intergenic 50.0%
CCACAACACCGAGAGACTAT+AGG + chr6_3:28491520-28491539 Msa0946650:intron 50.0%
GGAGCAAGAACTTGCCAAGT+TGG + chr6_3:28491895-28491914 Msa0946650:CDS 50.0%
! GAGTCTGTTGAGCTTTGGCT+CGG - chr6_3:28491955-28491974 None:intergenic 50.0%
CTTCTCAGACTACACAGTGC+GGG - chr6_3:28493085-28493104 None:intergenic 50.0%
TCTGCCACCATCGAAGTTGA+AGG + chr6_3:28493321-28493340 Msa0946650:CDS 50.0%
GTTGAAGGCCGTTATGCGTA+TGG + chr6_3:28493336-28493355 Msa0946650:CDS 50.0%
GGGTATTTGTCTGGGGAGAA+AGG + chr6_3:28493357-28493376 Msa0946650:CDS 50.0%
! ATTAGCTTCTCAAGAGCGGG+TGG + chr6_3:28493619-28493638 Msa0946650:CDS 50.0%
TTCTCAAGAGCGGGTGGAAA+AGG + chr6_3:28493625-28493644 Msa0946650:CDS 50.0%
AGCGAAGAGTGACACCAGTT+GGG - chr6_3:28493699-28493718 None:intergenic 50.0%
TCTGAAAGGGAGGCTTCACT+CGG + chr6_3:28493758-28493777 Msa0946650:intron 50.0%
CTGCAATTGTGCTTGTGCAG+AGG + chr6_3:28493994-28494013 Msa0946650:intron 50.0%
GGACGTAGTGAAGGCTGAAT+GGG + chr6_3:28494123-28494142 Msa0946650:CDS 50.0%
GACGTAGTGAAGGCTGAATG+GGG + chr6_3:28494124-28494143 Msa0946650:CDS 50.0%
GTTCCTCTCCATTGAATGGG+AGG - chr6_3:28494334-28494353 None:intergenic 50.0%
GTGGTGTAGTAGCAGCACAG+AGG - chr6_3:28490444-28490463 None:intergenic 55.0%
! GATGAGAGAGAGTGGTGGTG+CGG - chr6_3:28490572-28490591 None:intergenic 55.0%
AGGACGATGAGAGAGAGTGG+TGG - chr6_3:28490577-28490596 None:intergenic 55.0%
! CAATTGAGCAGCGTTGGGGA+AGG + chr6_3:28490741-28490760 Msa0946650:CDS 55.0%
! ATTGAGCAGCGTTGGGGAAG+GGG + chr6_3:28490743-28490762 Msa0946650:CDS 55.0%
ACGTGCACTTGCACTGAGGA+CGG - chr6_3:28491100-28491119 None:intergenic 55.0%
TTAGGAGGGGAATGGAAGGG+AGG + chr6_3:28491297-28491316 Msa0946650:intron 55.0%
!! TTTGGCTCGGTCGTCCCAAA+AGG - chr6_3:28491942-28491961 None:intergenic 55.0%
TCTATTACAGCAGGTGCGGG+AGG + chr6_3:28492616-28492635 Msa0946650:CDS 55.0%
ATTTCCAGTGCAGGACTGGG+CGG + chr6_3:28493203-28493222 Msa0946650:intron 55.0%
ACTGGGCGGACATGCTTCTT+AGG + chr6_3:28493217-28493236 Msa0946650:CDS 55.0%
ACGGCCTTCAACTTCGATGG+TGG - chr6_3:28493328-28493347 None:intergenic 55.0%
TCAAGAGCGGGTGGAAAAGG+AGG + chr6_3:28493628-28493647 Msa0946650:CDS 55.0%
CAGCGAAGAGTGACACCAGT+TGG - chr6_3:28493700-28493719 None:intergenic 55.0%
GATTCGAGGGGACGTAGTGA+AGG + chr6_3:28494114-28494133 Msa0946650:CDS 55.0%
GGGACGTAGTGAAGGCTGAA+TGG + chr6_3:28494122-28494141 Msa0946650:CDS 55.0%
GAGGACGGTTCTGTCGATCG+TGG - chr6_3:28491085-28491104 None:intergenic 60.0%
GTGCACGTGCACTTGCACTG+AGG - chr6_3:28491104-28491123 None:intergenic 60.0%
!! TGCGGGAGGTACTGATGCAC+AGG + chr6_3:28492630-28492649 Msa0946650:CDS 60.0%
!! GGTGTCACTCTTCGCTGCAC+AGG + chr6_3:28493703-28493722 Msa0946650:CDS 60.0%
ATGTCCGCCCAGTCCTGCAC+TGG - chr6_3:28493210-28493229 None:intergenic 65.0%
! GAGCAGCGTTGGGGAAGGGG+AGG + chr6_3:28490746-28490765 Msa0946650:CDS 70.0%
! CAGCGTTGGGGAAGGGGAGG+AGG + chr6_3:28490749-28490768 Msa0946650:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 28490267 28494491 28490267 ID=Msa0946650;Name=Msa0946650
chr6_3 mRNA 28490267 28494491 28490267 ID=Msa0946650-mRNA-1;Parent=Msa0946650;Name=Msa0946650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=156|1|1|1|1|1|7|173|471
chr6_3 exon 28490267 28490618 28490267 ID=Msa0946650-mRNA-1:exon:7618;Parent=Msa0946650-mRNA-1
chr6_3 exon 28490715 28490801 28490715 ID=Msa0946650-mRNA-1:exon:7619;Parent=Msa0946650-mRNA-1
chr6_3 exon 28491813 28492033 28491813 ID=Msa0946650-mRNA-1:exon:7620;Parent=Msa0946650-mRNA-1
chr6_3 exon 28492448 28492651 28492448 ID=Msa0946650-mRNA-1:exon:7621;Parent=Msa0946650-mRNA-1
chr6_3 exon 28493216 28493431 28493216 ID=Msa0946650-mRNA-1:exon:7622;Parent=Msa0946650-mRNA-1
chr6_3 exon 28493538 28493724 28493538 ID=Msa0946650-mRNA-1:exon:7623;Parent=Msa0946650-mRNA-1
chr6_3 exon 28494014 28494491 28494014 ID=Msa0946650-mRNA-1:exon:7624;Parent=Msa0946650-mRNA-1
chr6_3 five_prime_UTR 28490267 28490422 28490267 ID=Msa0946650-mRNA-1:five_prime_utr;Parent=Msa0946650-mRNA-1
chr6_3 CDS 28490423 28490618 28490423 ID=Msa0946650-mRNA-1:cds;Parent=Msa0946650-mRNA-1
chr6_3 CDS 28490715 28490801 28490715 ID=Msa0946650-mRNA-1:cds;Parent=Msa0946650-mRNA-1
chr6_3 CDS 28491813 28492033 28491813 ID=Msa0946650-mRNA-1:cds;Parent=Msa0946650-mRNA-1
chr6_3 CDS 28492448 28492651 28492448 ID=Msa0946650-mRNA-1:cds;Parent=Msa0946650-mRNA-1
chr6_3 CDS 28493216 28493431 28493216 ID=Msa0946650-mRNA-1:cds;Parent=Msa0946650-mRNA-1
chr6_3 CDS 28493538 28493724 28493538 ID=Msa0946650-mRNA-1:cds;Parent=Msa0946650-mRNA-1
chr6_3 CDS 28494014 28494318 28494014 ID=Msa0946650-mRNA-1:cds;Parent=Msa0946650-mRNA-1
chr6_3 three_prime_UTR 28494319 28494491 28494319 ID=Msa0946650-mRNA-1:three_prime_utr;Parent=Msa0946650-mRNA-1
Gene Sequence

>Msa0946650

ATGGAGGTTGTTTCACACCCTCTGTGCTGCTACTACACCACTGTAACCGCCAAAACCTTTAGGTCTTATAAACAACCATTTCTCATTCCACAATCTCCCTCTTCTTCTTCTTCTTCTTCTTCACCACATTTTCCTTTCTTATCTTTCCGCACCACCACTCTCTCTCATCGTCCTTCTCCTTTTCCTCTATCACCTGTAGTTCTGTTTGCGACGCCGGAGAATCAATTGAGCAGCGTTGGGGAAGGGGAGGAGGATACACACACAAGCGATTCCGCACTTCAAGATTTTTATTCGCTGAGGAAGGATGTTGAAATTGCATCACAGCGTGTCAAAGAGATTAGAGAATCATCTGGTCTACAATTATTGGAGCAAGAACTTGCCAAGTTGGAAGAGGAAGCATCTTGTAGCTCCTTTTGGGACGACCGAGCCAAAGCTCAACAGACTCTTTCGACATTGGCTGATGTCAAAGAAAAGATAAAATTGCTCAATGACTACAAAACTCAGGTTGAGGATGCAGAAACAATAGTTATGCTGACAGAGGAAATGGAATCCGTTGATAAAGGGCTTTATGAAGAAGCTTCTAGTCTAATTAAAGAACTGAATAAGTCAATTGATCGGTTTGAGCTGACTCAACTTCTTTCTGGTCCTTACGACAAAGAAGGTGCTGTTATCTCTATTACAGCAGGTGCGGGAGGTACTGATGCACAGGACTGGGCGGACATGCTTCTTAGGATGTATGTGAGATGGGGTGAGAAACAGAGATACAAAACCAGAGTGGTTGAGAAATCTCTTGGAGAAGAAGCTGGAATTAAATCTGCCACCATCGAAGTTGAAGGCCGTTATGCGTATGGGTATTTGTCTGGGGAGAAAGGAACACATCGCATTGTTCGGCAATCCCCTTTTAATTCCAAAGGTCTTCGTCAGACAAGCTTTTCTGGTGTTGAAGTCATGCCTCTTCTTCCAGAAGAATCTTTGAATGTTGAAATTCCAGAAGAGGACTTGGAGATTAGCTTCTCAAGAGCGGGTGGAAAAGGAGGTCAGAATGTTAACAAGGTTGAAACTGCCGTTCGAATTACACATATCCCAACTGGTGTCACTCTTCGCTGCACAGAGGAGAGATCTCAGCTAGCAAATAAGATAAAAGCTTTAAGTCGTTTGAAAGCGAAGCTGTTGGTGATAGCTGAAGAGCAACGTGCAACTGAATTTAAACAGATTCGAGGGGACGTAGTGAAGGCTGAATGGGGACAGCAAATAAGAAATTATGTCTTCCATCCATACAAACTAGTAAAGGATGTAAGAACAGGGCAAGAAACACCAGATATCACCTCTGTTATGGATGGAGAATTGGATCCCTTCATCAAATCTTACCTCAAACACAAGTATAGTATGACAATGTCTACAAGTGGGGTTAACTAA

Protein sequence

>Msa0946650

MEVVSHPLCCYYTTVTAKTFRSYKQPFLIPQSPSSSSSSSSPHFPFLSFRTTTLSHRPSPFPLSPVVLFATPENQLSSVGEGEEDTHTSDSALQDFYSLRKDVEIASQRVKEIRESSGLQLLEQELAKLEEEASCSSFWDDRAKAQQTLSTLADVKEKIKLLNDYKTQVEDAETIVMLTEEMESVDKGLYEEASSLIKELNKSIDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLVIAEEQRATEFKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGQETPDITSVMDGELDPFIKSYLKHKYSMTMSTSGVN*