AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0910400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0910400 MtrunA17_Chr6g0463111 93.377 151 10 0 18 168 18 168 9.17e-103 292
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0910400 AT5G52960.1 53.672 177 66 4 1 168 1 170 6.00e-60 184

Find 54 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTCAATAGAATGAAAT+TGG 0.221222 6_2:+14617127 None:intergenic
TGAAGCTTGGTTGAAGAGTT+TGG 0.257618 6_2:-14620685 Msa0910400:CDS
AGCAGCAGTTATACTTTGTT+TGG 0.262870 6_2:-14617012 Msa0910400:three_prime_UTR
TTCAATTATCGACAAAACTA+TGG 0.291019 6_2:+14617073 None:intergenic
TTGAAACTTAATAAGTTTCA+TGG 0.292685 6_2:-14617055 Msa0910400:three_prime_UTR
GAAGCTTGGTTGAAGAGTTT+GGG 0.305121 6_2:-14620684 Msa0910400:CDS
GAAAGGAAAATTGCTATCTA+TGG 0.307368 6_2:+14617224 None:intergenic
TTCTGAAGCCACTCATCTTC+AGG 0.322161 6_2:+14620756 None:intergenic
GCAGCAGTTATACTTTGTTT+GGG 0.324334 6_2:-14617011 Msa0910400:three_prime_UTR
GCATAAAACAATGGTGGAAA+TGG 0.369929 6_2:+14620818 None:intergenic
TTAATCAGAGTAAGGATGAT+AGG 0.370877 6_2:-14620659 Msa0910400:CDS
AAATGGGTTGTGACAAAGAT+TGG 0.391323 6_2:+14620891 None:intergenic
TTTGGGGTTTAATCAGAGTA+AGG 0.400405 6_2:-14620667 Msa0910400:CDS
ATGTTACTGACCTCTATGTT+AGG 0.401705 6_2:-14620587 Msa0910400:intron
TAAGGATGATAGGGCTTTGT+GGG 0.411638 6_2:-14620649 Msa0910400:CDS
CCACTCATCTTCAGGAACTA+AGG 0.427512 6_2:+14620764 None:intergenic
TCCAATTTCATTCTATTGAA+AGG 0.430555 6_2:-14617128 Msa0910400:three_prime_UTR
TGCTGCTAAGGGAAAACAAA+GGG 0.439374 6_2:+14617028 None:intergenic
GGTGGTGTTTGTGAATGTTA+AGG 0.450789 6_2:+14620950 None:intergenic
ACAATGGTTTAATTCCTTGT+TGG 0.453622 6_2:-14617187 Msa0910400:three_prime_UTR
TACAAAGGCTTAGTCTTCTC+AGG 0.455056 6_2:+14620729 None:intergenic
AAACATTCTGATAAGTATGA+AGG 0.459763 6_2:+14616946 None:intergenic
GCTTGCCTTGTATTGAAGCT+TGG 0.464508 6_2:-14620698 Msa0910400:CDS
ACAAAGTATAACTGCTGCTA+AGG 0.480759 6_2:+14617016 None:intergenic
TGTGAATGTTAAGGTTGTGA+TGG 0.490304 6_2:+14620959 None:intergenic
GACATTGAGAATGCTGTGCT+TGG 0.498630 6_2:-14617251 Msa0910400:CDS
AGGTATTTGAAGAGTGGACC+TGG 0.511447 6_2:-14617326 Msa0910400:CDS
TGAGGTTGGGAATGTGATGT+TGG 0.518989 6_2:+14620929 None:intergenic
TAATCAGAGTAAGGATGATA+GGG 0.526131 6_2:-14620658 Msa0910400:CDS
CATAAAACAATGGTGGAAAT+GGG 0.526649 6_2:+14620819 None:intergenic
CACTCATCTTCAGGAACTAA+GGG 0.528082 6_2:+14620765 None:intergenic
GGGTTGTTAATAAGAGTGAT+TGG 0.531773 6_2:-14620629 Msa0910400:CDS
GTAAGGATGATAGGGCTTTG+TGG 0.534435 6_2:-14620650 Msa0910400:CDS
GGTTGGGAATGTGATGTTGG+TGG 0.536430 6_2:+14620932 None:intergenic
ATTGAGAATGCTGTGCTTGG+AGG 0.543070 6_2:-14617248 Msa0910400:CDS
AAGCTTGGTTGAAGAGTTTG+GGG 0.545074 6_2:-14620683 Msa0910400:CDS
TTCAACCAAGCTTCAATACA+AGG 0.545936 6_2:+14620693 None:intergenic
TGGTGCAGGTATTTGAAGAG+TGG 0.553975 6_2:-14617332 Msa0910400:intron
GAATGTTAAGGTTGTGATGG+TGG 0.561334 6_2:+14620962 None:intergenic
AACATTCTGATAAGTATGAA+GGG 0.561545 6_2:+14616947 None:intergenic
TCTACTTTCAAAATATACAA+TGG 0.566672 6_2:-14617203 Msa0910400:three_prime_UTR
TGGACCTGGGAATCTTGAAA+AGG 0.568678 6_2:-14617312 Msa0910400:CDS
ATCTTGAAAAGGATGTAGAG+AGG 0.581472 6_2:-14617301 Msa0910400:CDS
AAAACACTCACCTAACATAG+AGG 0.581686 6_2:+14620577 None:intergenic
CAGCAGTTATACTTTGTTTG+GGG 0.591414 6_2:-14617010 Msa0910400:three_prime_UTR
CAAAGTATAACTGCTGCTAA+GGG 0.600061 6_2:+14617017 None:intergenic
CCTTAGTTCCTGAAGATGAG+TGG 0.609305 6_2:-14620764 Msa0910400:CDS
ACCTGTGCATAAAACAATGG+TGG 0.649501 6_2:+14620812 None:intergenic
CTGCTGCTAAGGGAAAACAA+AGG 0.658338 6_2:+14617027 None:intergenic
GGCAAGCTATGTGTATACAA+AGG 0.667400 6_2:+14620714 None:intergenic
GGTATTTGAAGAGTGGACCT+GGG 0.669089 6_2:-14617325 Msa0910400:CDS
GCTGCTAAGGGAAAACAAAG+GGG 0.696311 6_2:+14617029 None:intergenic
ATATGAAATAACTTCCAACA+AGG 0.697035 6_2:+14617173 None:intergenic
TGAACCTGTGCATAAAACAA+TGG 0.718354 6_2:+14620809 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAATTTTTTGGAAAAT+TGG - chr6_2:14619933-14619952 Msa0910400:intron 10.0%
!!! TCATTTTCTAAAAGTATTAA+CGG + chr6_2:14617856-14617875 None:intergenic 15.0%
!!! CAGTTAGAAAAAAACAATTT+TGG - chr6_2:14616909-14616928 Msa0910400:three_prime_UTR 20.0%
!!! TTATGTTTTTGTTTGTGTTA+AGG + chr6_2:14617078-14617097 None:intergenic 20.0%
!!! TTTTCTTTTTCCTTCTTTTA+AGG - chr6_2:14617538-14617557 Msa0910400:intron 20.0%
!! AAAACAAAAACCTTAAAAGA+AGG + chr6_2:14617551-14617570 None:intergenic 20.0%
!!! TGTGATTTTCTCAAATTATT+AGG + chr6_2:14617685-14617704 None:intergenic 20.0%
!!! TTGAATTTTGTTAGTAGAAA+AGG - chr6_2:14618057-14618076 Msa0910400:intron 20.0%
!!! AAATTAGTCTTGCAAAAATA+GGG + chr6_2:14618278-14618297 None:intergenic 20.0%
!! TATTTATGAAAATGTACACA+AGG - chr6_2:14618383-14618402 Msa0910400:intron 20.0%
!!! TTATATTGACTTTTGTAAGT+AGG - chr6_2:14618502-14618521 Msa0910400:intron 20.0%
!!! AAGTAGGTAATGTTTTAAAT+TGG - chr6_2:14618518-14618537 Msa0910400:intron 20.0%
!!! AGTAGGTAATGTTTTAAATT+GGG - chr6_2:14618519-14618538 Msa0910400:intron 20.0%
!! AAAGATCTATAAATGCAATA+AGG - chr6_2:14619177-14619196 Msa0910400:intron 20.0%
!! ATAATTCTGATATTGAATCA+TGG - chr6_2:14619714-14619733 Msa0910400:intron 20.0%
!!! AAGTGTTTGAATTTTACTAA+AGG + chr6_2:14620355-14620374 None:intergenic 20.0%
!!! TGTATATTTTGAAAGTAGAA+AGG + chr6_2:14620890-14620909 None:intergenic 20.0%
!! TCTACTTTCAAAATATACAA+TGG - chr6_2:14620891-14620910 Msa0910400:CDS 20.0%
!! TTGAAACTTAATAAGTTTCA+TGG - chr6_2:14621039-14621058 Msa0910400:five_prime_UTR 20.0%
! TGTTATCTGCAAAAATTGTT+TGG + chr6_2:14617006-14617025 None:intergenic 25.0%
!!! TTTTGTTTGTGTTAAGGTTT+TGG + chr6_2:14617072-14617091 None:intergenic 25.0%
!!! AGAAATGGATTTTGTGAAAT+GGG + chr6_2:14617222-14617241 None:intergenic 25.0%
!!! TTTTGAAGGAAATTGAAAGT+GGG + chr6_2:14617253-14617272 None:intergenic 25.0%
!!! TTTTTGAAGGAAATTGAAAG+TGG + chr6_2:14617254-14617273 None:intergenic 25.0%
!!! CTTTTAAGGTTTTTGTTTTG+TGG - chr6_2:14617552-14617571 Msa0910400:intron 25.0%
! TAATGCTATTCATCTATGTA+TGG - chr6_2:14617963-14617982 Msa0910400:intron 25.0%
!! AATTGCTCAATTGATTTATG+AGG - chr6_2:14617991-14618010 Msa0910400:intron 25.0%
!!! GTAGAAAAGGTTTTATATTG+CGG - chr6_2:14618070-14618089 Msa0910400:intron 25.0%
!!! GAAATTAGTCTTGCAAAAAT+AGG + chr6_2:14618279-14618298 None:intergenic 25.0%
!!! GTAGGTAATGTTTTAAATTG+GGG - chr6_2:14618520-14618539 Msa0910400:intron 25.0%
!! CATTTAAAACCTTAAAGTGA+CGG - chr6_2:14618618-14618637 Msa0910400:intron 25.0%
! CAAATAGTGTTATAATGAAG+TGG - chr6_2:14618833-14618852 Msa0910400:intron 25.0%
!!! GGACAAATTGCTATTTTTTA+CGG - chr6_2:14618958-14618977 Msa0910400:intron 25.0%
! ATAACAACAATGTGAATGTT+TGG + chr6_2:14619578-14619597 None:intergenic 25.0%
!!! TAATCATTGATAGTGAATCA+AGG + chr6_2:14619901-14619920 None:intergenic 25.0%
! TGATTCACTATCAATGATTA+TGG - chr6_2:14619901-14619920 Msa0910400:intron 25.0%
! CCAAAAAATTTAATAGACAG+TGG + chr6_2:14619928-14619947 None:intergenic 25.0%
!!! CCACTGTCTATTAAATTTTT+TGG - chr6_2:14619925-14619944 Msa0910400:intron 25.0%
! CCAATGAAGAAATTAAACAA+AGG + chr6_2:14620473-14620492 None:intergenic 25.0%
!! CCTTTGTTTAATTTCTTCAT+TGG - chr6_2:14620470-14620489 Msa0910400:intron 25.0%
! ATATGAAATAACTTCCAACA+AGG + chr6_2:14620924-14620943 None:intergenic 25.0%
! TCCAATTTCATTCTATTGAA+AGG - chr6_2:14620966-14620985 Msa0910400:CDS 25.0%
! TCCTTTCAATAGAATGAAAT+TGG + chr6_2:14620970-14620989 None:intergenic 25.0%
! TTCAATTATCGACAAAACTA+TGG + chr6_2:14621024-14621043 None:intergenic 25.0%
! AACATTCTGATAAGTATGAA+GGG + chr6_2:14621150-14621169 None:intergenic 25.0%
! AAACATTCTGATAAGTATGA+AGG + chr6_2:14621151-14621170 None:intergenic 25.0%
ATCTGCAAAAATTGTTTGGA+GGG + chr6_2:14617002-14617021 None:intergenic 30.0%
TATCTGCAAAAATTGTTTGG+AGG + chr6_2:14617003-14617022 None:intergenic 30.0%
!!! GGTTTTTTGAGTGATGAATT+TGG + chr6_2:14617051-14617070 None:intergenic 30.0%
!!! GACAAAGATTGGATTTTTTG+TGG + chr6_2:14617195-14617214 None:intergenic 30.0%
!! GAGAAATGGATTTTGTGAAA+TGG + chr6_2:14617223-14617242 None:intergenic 30.0%
! CATAAAACAATGGTGGAAAT+GGG + chr6_2:14617278-14617297 None:intergenic 30.0%
TTAATCAGAGTAAGGATGAT+AGG - chr6_2:14617435-14617454 Msa0910400:intron 30.0%
TAATCAGAGTAAGGATGATA+GGG - chr6_2:14617436-14617455 Msa0910400:intron 30.0%
!!! AGGTTTTTGTTTTGTGGTTT+TGG - chr6_2:14617558-14617577 Msa0910400:intron 30.0%
!!! TTTGTGGTTTTGGTTTTTTG+TGG - chr6_2:14617568-14617587 Msa0910400:intron 30.0%
!!! TTGTGGTTTTGGTTTTTTGT+GGG - chr6_2:14617569-14617588 Msa0910400:intron 30.0%
GGTATTAATTCTATGAAGCA+CGG - chr6_2:14617610-14617629 Msa0910400:intron 30.0%
! TCTCAAATTATTAGGAGTGT+CGG + chr6_2:14617677-14617696 None:intergenic 30.0%
! TTCAGTGCAATTAAAAGTGT+CGG - chr6_2:14617708-14617727 Msa0910400:intron 30.0%
ATAGCATTAGTATAGTACTG+TGG + chr6_2:14617952-14617971 None:intergenic 30.0%
! CTCAATTGATTTATGAGGTT+TGG - chr6_2:14617996-14618015 Msa0910400:intron 30.0%
CGATATCAAGAATTGAAATG+TGG + chr6_2:14618096-14618115 None:intergenic 30.0%
ATTCTTGATATCGATCAATG+TGG - chr6_2:14618103-14618122 Msa0910400:intron 30.0%
! ATAGCACTATTTGATAACAC+CGG + chr6_2:14618135-14618154 None:intergenic 30.0%
GGATATCTGAGTTTGAATTT+AGG - chr6_2:14618466-14618485 Msa0910400:intron 30.0%
!! TTTTCTTGCTTTTGTGTTGT+GGG - chr6_2:14618661-14618680 Msa0910400:intron 30.0%
!! TTGAGATTTTGATGTTTGTG+TGG - chr6_2:14618687-14618706 Msa0910400:intron 30.0%
!! TGAGATTTTGATGTTTGTGT+GGG - chr6_2:14618688-14618707 Msa0910400:intron 30.0%
TATGTATGAATTTGTACGCT+AGG - chr6_2:14618713-14618732 Msa0910400:intron 30.0%
CAATATGAAGAATTGCAATG+CGG + chr6_2:14618775-14618794 None:intergenic 30.0%
CATTGCAATTCTTCATATTG+TGG - chr6_2:14618775-14618794 Msa0910400:intron 30.0%
ATAACACTATTTGACAACAC+CGG + chr6_2:14618826-14618845 None:intergenic 30.0%
!! TATAAAGTGTCGTCAAATAG+CGG - chr6_2:14618897-14618916 Msa0910400:intron 30.0%
CATCAAAAACCTTAATGTGA+CGG - chr6_2:14619020-14619039 Msa0910400:intron 30.0%
CAAATTCTTTATGTTGCCTA+GGG + chr6_2:14619078-14619097 None:intergenic 30.0%
TCAAATTCTTTATGTTGCCT+AGG + chr6_2:14619079-14619098 None:intergenic 30.0%
!!! TTGTAGTTTTGAATGTGCTT+GGG + chr6_2:14619158-14619177 None:intergenic 30.0%
!!! TTTGTAGTTTTGAATGTGCT+TGG + chr6_2:14619159-14619178 None:intergenic 30.0%
GTTGTTTACTCAGCATATAA+TGG + chr6_2:14619408-14619427 None:intergenic 30.0%
!!! GTTACTTTTTGACTTCGATT+TGG - chr6_2:14619496-14619515 Msa0910400:intron 30.0%
TGATTCACTATCAGTGATTA+TGG - chr6_2:14619767-14619786 Msa0910400:intron 30.0%
!! TTTTAGAAAAGCAAGATCTG+AGG + chr6_2:14619831-14619850 None:intergenic 30.0%
TTTCAAGACATCGTAATCAA+TGG + chr6_2:14620001-14620020 None:intergenic 30.0%
GTACAATGGCATTATATAAG+TGG - chr6_2:14620192-14620211 Msa0910400:intron 30.0%
AACATCGAGATAGTTAAAAG+CGG + chr6_2:14620722-14620741 None:intergenic 30.0%
!!! GACATTGAAACGTTTTGATT+TGG - chr6_2:14620742-14620761 Msa0910400:CDS 30.0%
GAAAGGAAAATTGCTATCTA+TGG + chr6_2:14620873-14620892 None:intergenic 30.0%
ACAATGGTTTAATTCCTTGT+TGG - chr6_2:14620907-14620926 Msa0910400:CDS 30.0%
TGTGAATGTTAAGGTTGTGA+TGG + chr6_2:14617138-14617157 None:intergenic 35.0%
! TTTTTGTGGAGATTGAGGTT+GGG + chr6_2:14617181-14617200 None:intergenic 35.0%
!!! TTTTTTGTGGAGATTGAGGT+TGG + chr6_2:14617182-14617201 None:intergenic 35.0%
!!! TGGATTTTTTGTGGAGATTG+AGG + chr6_2:14617186-14617205 None:intergenic 35.0%
!! AAATGGGTTGTGACAAAGAT+TGG + chr6_2:14617206-14617225 None:intergenic 35.0%
!!! AAGTGGGTTTTGAAGAGAAA+TGG + chr6_2:14617237-14617256 None:intergenic 35.0%
! GCATAAAACAATGGTGGAAA+TGG + chr6_2:14617279-14617298 None:intergenic 35.0%
TGAACCTGTGCATAAAACAA+TGG + chr6_2:14617288-14617307 None:intergenic 35.0%
TTCAACCAAGCTTCAATACA+AGG + chr6_2:14617404-14617423 None:intergenic 35.0%
! TTTGGGGTTTAATCAGAGTA+AGG - chr6_2:14617427-14617446 Msa0910400:intron 35.0%
GGGTTGTTAATAAGAGTGAT+TGG - chr6_2:14617465-14617484 Msa0910400:intron 35.0%
ATGTTACTGACCTCTATGTT+AGG - chr6_2:14617507-14617526 Msa0910400:intron 35.0%
AAAACACTCACCTAACATAG+AGG + chr6_2:14617520-14617539 None:intergenic 35.0%
!!! TGTGGTTTTGGTTTTTTGTG+GGG - chr6_2:14617570-14617589 Msa0910400:intron 35.0%
TGAGGTTTGGATGTTTGAAT+TGG - chr6_2:14618009-14618028 Msa0910400:intron 35.0%
! AATTTTGAACCACACAATGG+TGG + chr6_2:14618424-14618443 None:intergenic 35.0%
! AGCAATTTTGAACCACACAA+TGG + chr6_2:14618427-14618446 None:intergenic 35.0%
GTGGTTCAAAATTGCTCAAT+TGG - chr6_2:14618431-14618450 Msa0910400:intron 35.0%
!! GTTTTCTTGCTTTTGTGTTG+TGG - chr6_2:14618660-14618679 Msa0910400:intron 35.0%
GTGGAGAATTACGATTAATG+TGG - chr6_2:14618794-14618813 Msa0910400:intron 35.0%
!! ACGATTAATGTGGCTTTAAC+CGG - chr6_2:14618804-14618823 Msa0910400:intron 35.0%
!! TATTTTGGACCGTCACATTA+AGG + chr6_2:14619032-14619051 None:intergenic 35.0%
GTCCAAAATATGATTGCAGA+CGG - chr6_2:14619042-14619061 Msa0910400:intron 35.0%
! AACCGTCTGCAATCATATTT+TGG + chr6_2:14619047-14619066 None:intergenic 35.0%
!!! AGACGGTTTTTTTAAACCCT+AGG - chr6_2:14619059-14619078 Msa0910400:intron 35.0%
CCACTGGGTCAATTATTTAA+TGG + chr6_2:14619107-14619126 None:intergenic 35.0%
CCATTAAATAATTGACCCAG+TGG - chr6_2:14619104-14619123 Msa0910400:intron 35.0%
ATATGTATCTTCTAGCCACT+GGG + chr6_2:14619122-14619141 None:intergenic 35.0%
! TTTTGAATGTGCTTGGGAAA+AGG + chr6_2:14619152-14619171 None:intergenic 35.0%
ACAATCTCATGAGAAGAGAA+GGG + chr6_2:14619258-14619277 None:intergenic 35.0%
TATATGCTGAGTAAACAACG+AGG - chr6_2:14619409-14619428 Msa0910400:intron 35.0%
!! TCAGTTCTAGTTCTAGTACT+CGG + chr6_2:14619466-14619485 None:intergenic 35.0%
!!! ATGCTTTTAGAGCAAACAGA+TGG + chr6_2:14619872-14619891 None:intergenic 35.0%
GATTGAAGACATTTCTGAAC+TGG - chr6_2:14620170-14620189 Msa0910400:intron 35.0%
ACATTTCTGAACTGGTACAA+TGG - chr6_2:14620178-14620197 Msa0910400:intron 35.0%
AGCTCATCTCAACTTATGTA+AGG + chr6_2:14620420-14620439 None:intergenic 35.0%
TACTGACATAAACACTTGTC+AGG + chr6_2:14620671-14620690 None:intergenic 35.0%
ATCTTGAAAAGGATGTAGAG+AGG - chr6_2:14620793-14620812 Msa0910400:CDS 35.0%
CAAAGTATAACTGCTGCTAA+GGG + chr6_2:14621080-14621099 None:intergenic 35.0%
ACAAAGTATAACTGCTGCTA+AGG + chr6_2:14621081-14621100 None:intergenic 35.0%
AGCAGCAGTTATACTTTGTT+TGG - chr6_2:14621082-14621101 Msa0910400:five_prime_UTR 35.0%
! GCAGCAGTTATACTTTGTTT+GGG - chr6_2:14621083-14621102 Msa0910400:five_prime_UTR 35.0%
! CAGCAGTTATACTTTGTTTG+GGG - chr6_2:14621084-14621103 Msa0910400:five_prime_UTR 35.0%
GAATGTTAAGGTTGTGATGG+TGG + chr6_2:14617135-14617154 None:intergenic 40.0%
GGTGGTGTTTGTGAATGTTA+AGG + chr6_2:14617147-14617166 None:intergenic 40.0%
!!! GGTGGAAATGGGTTTTTTGA+AGG + chr6_2:14617267-14617286 None:intergenic 40.0%
!! TCCACCATTGTTTTATGCAC+AGG - chr6_2:14617281-14617300 Msa0910400:CDS 40.0%
ACCTGTGCATAAAACAATGG+TGG + chr6_2:14617285-14617304 None:intergenic 40.0%
CACTCATCTTCAGGAACTAA+GGG + chr6_2:14617332-14617351 None:intergenic 40.0%
! TACAAAGGCTTAGTCTTCTC+AGG + chr6_2:14617368-14617387 None:intergenic 40.0%
GGCAAGCTATGTGTATACAA+AGG + chr6_2:14617383-14617402 None:intergenic 40.0%
TGAAGCTTGGTTGAAGAGTT+TGG - chr6_2:14617409-14617428 Msa0910400:intron 40.0%
GAAGCTTGGTTGAAGAGTTT+GGG - chr6_2:14617410-14617429 Msa0910400:intron 40.0%
AAGCTTGGTTGAAGAGTTTG+GGG - chr6_2:14617411-14617430 Msa0910400:intron 40.0%
! TAAGGATGATAGGGCTTTGT+GGG - chr6_2:14617445-14617464 Msa0910400:intron 40.0%
GGGGTGTATGTATGAAAGTA+AGG - chr6_2:14617589-14617608 Msa0910400:intron 40.0%
!! TCGATCAATGTGGCTTTAAC+CGG - chr6_2:14618113-14618132 Msa0910400:intron 40.0%
CACAGAAGCAAGCAAACAAA+AGG + chr6_2:14618329-14618348 None:intergenic 40.0%
!! AATTGCTCAATTGGTTTGCG+AGG - chr6_2:14618440-14618459 Msa0910400:intron 40.0%
CACTGTAGTGTAGCAGAATT+TGG - chr6_2:14618937-14618956 Msa0910400:intron 40.0%
GAAGCCAGTGTTATCAATTG+TGG + chr6_2:14618985-14619004 None:intergenic 40.0%
CATATGTATCTTCTAGCCAC+TGG + chr6_2:14619123-14619142 None:intergenic 40.0%
AACCACAATGCGATTTGCAT+AGG + chr6_2:14619223-14619242 None:intergenic 40.0%
AATCTCATGAGAAGAGAAGG+GGG + chr6_2:14619256-14619275 None:intergenic 40.0%
CAATCTCATGAGAAGAGAAG+GGG + chr6_2:14619257-14619276 None:intergenic 40.0%
CACAATCTCATGAGAAGAGA+AGG + chr6_2:14619259-14619278 None:intergenic 40.0%
CTTCTCTTCTCATGAGATTG+TGG - chr6_2:14619257-14619276 Msa0910400:intron 40.0%
CGGTATGACTTATAACTGAC+CGG - chr6_2:14619374-14619393 Msa0910400:intron 40.0%
! GCATATAATGGAGAATGTGC+CGG + chr6_2:14619396-14619415 None:intergenic 40.0%
! AAACAACGAGGTTTGTTCCA+AGG - chr6_2:14619421-14619440 Msa0910400:intron 40.0%
ACTACTCAAGATCCTTACCT+TGG + chr6_2:14619441-14619460 None:intergenic 40.0%
!! CAGTTCTAGTTCTAGTACTC+GGG + chr6_2:14619465-14619484 None:intergenic 40.0%
TAGACTGCAACTTCAAGGTT+GGG - chr6_2:14619536-14619555 Msa0910400:intron 40.0%
ATGTTTGGTATAGCCCTGTT+CGG + chr6_2:14619563-14619582 None:intergenic 40.0%
!!! ACTGCTTTTAGAGCAAACAG+TGG + chr6_2:14619794-14619813 None:intergenic 40.0%
! GTTAAAAGCGGTTTGGACTT+TGG + chr6_2:14620710-14620729 None:intergenic 40.0%
CGAGATAGTTAAAAGCGGTT+TGG + chr6_2:14620717-14620736 None:intergenic 40.0%
!!! GAAACGTTTTGATTTGGTGC+AGG - chr6_2:14620748-14620767 Msa0910400:CDS 40.0%
!! ACATCCTTTTCAAGATTCCC+AGG + chr6_2:14620789-14620808 None:intergenic 40.0%
TGCTGCTAAGGGAAAACAAA+GGG + chr6_2:14621069-14621088 None:intergenic 40.0%
TGAGGTTGGGAATGTGATGT+TGG + chr6_2:14617168-14617187 None:intergenic 45.0%
CCACTCATCTTCAGGAACTA+AGG + chr6_2:14617333-14617352 None:intergenic 45.0%
CCTTAGTTCCTGAAGATGAG+TGG - chr6_2:14617330-14617349 Msa0910400:intron 45.0%
!! TTCTGAAGCCACTCATCTTC+AGG + chr6_2:14617341-14617360 None:intergenic 45.0%
GCTTGCCTTGTATTGAAGCT+TGG - chr6_2:14617396-14617415 Msa0910400:intron 45.0%
GTAAGGATGATAGGGCTTTG+TGG - chr6_2:14617444-14617463 Msa0910400:intron 45.0%
ATGAAGCACGGATACAGACA+CGG - chr6_2:14617622-14617641 Msa0910400:intron 45.0%
CACATGTGTGAGTGTCATGT+CGG - chr6_2:14617892-14617911 Msa0910400:intron 45.0%
TCGAACACACCTTTGATCAG+AGG - chr6_2:14617918-14617937 Msa0910400:intron 45.0%
GCATCAACACCTCTGATCAA+AGG + chr6_2:14617930-14617949 None:intergenic 45.0%
GCTTCTGTGTTGTGAGTTTG+AGG - chr6_2:14618340-14618359 Msa0910400:intron 45.0%
GCTATCTATCCACCATTGTG+TGG - chr6_2:14618412-14618431 Msa0910400:intron 45.0%
!! CTCAATTGGTTTGCGAGGTT+TGG - chr6_2:14618445-14618464 Msa0910400:intron 45.0%
CTTAAAGTGACGGCTAACGT+GGG - chr6_2:14618628-14618647 Msa0910400:intron 45.0%
! CGGTCCACAATTGATAACAC+TGG - chr6_2:14618978-14618997 Msa0910400:intron 45.0%
!! GATAACACTGGCTTCAACCA+CGG - chr6_2:14618990-14619009 Msa0910400:intron 45.0%
TGCGATTTGCATAGGAGTGA+GGG + chr6_2:14619215-14619234 None:intergenic 45.0%
ATGCGATTTGCATAGGAGTG+AGG + chr6_2:14619216-14619235 None:intergenic 45.0%
CTCCTATGCAAATCGCATTG+TGG - chr6_2:14619218-14619237 Msa0910400:intron 45.0%
ATCTCATGAGAAGAGAAGGG+GGG + chr6_2:14619255-14619274 None:intergenic 45.0%
GAGATTGTGGTGTTTCCAGT+TGG - chr6_2:14619270-14619289 Msa0910400:intron 45.0%
!! GAGCTATTTTCAGGAACGTG+GGG + chr6_2:14619300-14619319 None:intergenic 45.0%
!! GGAGCTATTTTCAGGAACGT+GGG + chr6_2:14619301-14619320 None:intergenic 45.0%
!! GGACTAAGGGAGCTATTTTC+AGG + chr6_2:14619309-14619328 None:intergenic 45.0%
! ACGAGGTTTGTTCCAAGGTA+AGG - chr6_2:14619426-14619445 Msa0910400:intron 45.0%
CTAGACTGCAACTTCAAGGT+TGG - chr6_2:14619535-14619554 Msa0910400:intron 45.0%
TGTTTGGTATAGCCCTGTTC+GGG + chr6_2:14619562-14619581 None:intergenic 45.0%
ACCTGCAAATGTCAGTGCAA+GGG + chr6_2:14619602-14619621 None:intergenic 45.0%
AGCAAGATCTGAGGAGATGA+AGG + chr6_2:14619822-14619841 None:intergenic 45.0%
ATAAGAGTCTGTGTCGTGTC+TGG - chr6_2:14620098-14620117 Msa0910400:intron 45.0%
TGGTGCAGGTATTTGAAGAG+TGG - chr6_2:14620762-14620781 Msa0910400:CDS 45.0%
AGGTATTTGAAGAGTGGACC+TGG - chr6_2:14620768-14620787 Msa0910400:CDS 45.0%
GGTATTTGAAGAGTGGACCT+GGG - chr6_2:14620769-14620788 Msa0910400:CDS 45.0%
TGGACCTGGGAATCTTGAAA+AGG - chr6_2:14620782-14620801 Msa0910400:CDS 45.0%
GACATTGAGAATGCTGTGCT+TGG - chr6_2:14620843-14620862 Msa0910400:CDS 45.0%
ATTGAGAATGCTGTGCTTGG+AGG - chr6_2:14620846-14620865 Msa0910400:CDS 45.0%
GCTGCTAAGGGAAAACAAAG+GGG + chr6_2:14621068-14621087 None:intergenic 45.0%
CTGCTGCTAAGGGAAAACAA+AGG + chr6_2:14621070-14621089 None:intergenic 45.0%
GGTTGGGAATGTGATGTTGG+TGG + chr6_2:14617165-14617184 None:intergenic 50.0%
GCACAAACACTCCTCCGATT+AGG + chr6_2:14617765-14617784 None:intergenic 50.0%
! CCACGTTAGCCGTCACTTTA+AGG + chr6_2:14618630-14618649 None:intergenic 50.0%
CCTTAAAGTGACGGCTAACG+TGG - chr6_2:14618627-14618646 Msa0910400:intron 50.0%
TGTCGTCAAATAGCGGCTGT+AGG - chr6_2:14618904-14618923 Msa0910400:intron 50.0%
! GTTTTTGATGTCTGCGACCG+TGG + chr6_2:14619010-14619029 None:intergenic 50.0%
!! GGGAGCTATTTTCAGGAACG+TGG + chr6_2:14619302-14619321 None:intergenic 50.0%
!! TGACTTCGATTTGGCTTCCG+AGG - chr6_2:14619505-14619524 Msa0910400:intron 50.0%
CGCACTAGACTGCAACTTCA+AGG - chr6_2:14619531-14619550 Msa0910400:intron 50.0%
! TCCCTTGCACTGACATTTGC+AGG - chr6_2:14619598-14619617 Msa0910400:intron 50.0%
GACCTGCAAATGTCAGTGCA+AGG + chr6_2:14619603-14619622 None:intergenic 50.0%
ACGGATACAGACACGGACAC+CGG - chr6_2:14617629-14617648 Msa0910400:intron 55.0%
TCGTGTCACGTGTCTGACAC+CGG - chr6_2:14617733-14617752 Msa0910400:intron 55.0%
GACACCGGGACATGCCTAAT+CGG - chr6_2:14617748-14617767 Msa0910400:intron 55.0%
TCCTCCGATTAGGCATGTCC+CGG + chr6_2:14617755-14617774 None:intergenic 55.0%
AACGAGACGCCCCACTACTA+GGG + chr6_2:14619343-14619362 None:intergenic 55.0%
TAACGAGACGCCCCACTACT+AGG + chr6_2:14619344-14619363 None:intergenic 55.0%
! AGTAGTGGGGCGTCTCGTTA+CGG - chr6_2:14619344-14619363 Msa0910400:intron 55.0%
CGTCTCGTTACGGGAACGTA+CGG - chr6_2:14619354-14619373 Msa0910400:intron 55.0%
TGCAGTCTAGTGCGCAACCT+CGG + chr6_2:14619525-14619544 None:intergenic 55.0%
TTCAAGGTTGGGCCCGAACA+GGG - chr6_2:14619547-14619566 Msa0910400:intron 55.0%
! CGTCTGTGTCGGTGTTTCAC+AGG - chr6_2:14620121-14620140 Msa0910400:intron 55.0%
GTCAGTGTCCGCGTCGTATC+CGG + chr6_2:14617651-14617670 None:intergenic 60.0%
CGTGTCACGTGTCTGACACC+GGG - chr6_2:14617734-14617753 Msa0910400:intron 60.0%
ACCGGGACATGCCTAATCGG+AGG - chr6_2:14617751-14617770 Msa0910400:intron 60.0%
GGAACGTGGGGACTTCCAAC+TGG + chr6_2:14619288-14619307 None:intergenic 60.0%
! GGGTGGGGCACTTGGACTAA+GGG + chr6_2:14619322-14619341 None:intergenic 60.0%
! ACTACTAGGGGTGGGGCACT+TGG + chr6_2:14619330-14619349 None:intergenic 60.0%
AAGTGCCCCACCCCTAGTAG+TGG - chr6_2:14619329-14619348 Msa0910400:intron 60.0%
AGTGCCCCACCCCTAGTAGT+GGG - chr6_2:14619330-14619349 Msa0910400:intron 60.0%
ACGAGACGCCCCACTACTAG+GGG + chr6_2:14619342-14619361 None:intergenic 60.0%
! GTAGTGGGGCGTCTCGTTAC+GGG - chr6_2:14619345-14619364 Msa0910400:intron 60.0%
CTTCAAGGTTGGGCCCGAAC+AGG - chr6_2:14619546-14619565 Msa0910400:intron 60.0%
GTCGTGTCTGGCGTCTGTGT+CGG - chr6_2:14620110-14620129 Msa0910400:intron 60.0%
CACGGACACCGGATACGACG+CGG - chr6_2:14617640-14617659 Msa0910400:intron 65.0%
! GGGGTGGGGCACTTGGACTA+AGG + chr6_2:14619323-14619342 None:intergenic 65.0%
GTGCCCCACCCCTAGTAGTG+GGG - chr6_2:14619331-14619350 Msa0910400:intron 65.0%
ACGCCCCACTACTAGGGGTG+GGG + chr6_2:14619337-14619356 None:intergenic 65.0%
GACGCCCCACTACTAGGGGT+GGG + chr6_2:14619338-14619357 None:intergenic 65.0%
AGACGCCCCACTACTAGGGG+TGG + chr6_2:14619339-14619358 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 14616869 14621247 14616869 ID=Msa0910400;Name=Msa0910400
chr6_2 mRNA 14616869 14621247 14616869 ID=Msa0910400-mRNA-1;Parent=Msa0910400;Name=Msa0910400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=259|1|1|1|1|1|2|372|168
chr6_2 exon 14616869 14617346 14616869 ID=Msa0910400-mRNA-1:exon:3237;Parent=Msa0910400-mRNA-1
chr6_2 exon 14620588 14621247 14620588 ID=Msa0910400-mRNA-1:exon:3236;Parent=Msa0910400-mRNA-1
chr6_2 five_prime_UTR 14620989 14621247 14620989 ID=Msa0910400-mRNA-1:five_prime_utr;Parent=Msa0910400-mRNA-1
chr6_2 CDS 14620588 14620988 14620588 ID=Msa0910400-mRNA-1:cds;Parent=Msa0910400-mRNA-1
chr6_2 CDS 14617241 14617346 14617241 ID=Msa0910400-mRNA-1:cds;Parent=Msa0910400-mRNA-1
chr6_2 three_prime_UTR 14616869 14617240 14616869 ID=Msa0910400-mRNA-1:three_prime_utr;Parent=Msa0910400-mRNA-1
Gene Sequence

>Msa0910400

ATGTCCACCATCACAACCTTAACATTCACAAACACCACCAACATCACATTCCCAACCTCAATCTCCACAAAAAATCCAATCTTTGTCACAACCCATTTCACAAAATCCATTTCTCTTCAAAACCCACTTTCAATTTCCTTCAAAAAACCCATTTCCACCATTGTTTTATGCACAGGTTCATCTGAATCAGAATCTGAAGAGCCCTTAGTTCCTGAAGATGAGTGGCTTCAGAAACTACCTGAGAAGACTAAGCCTTTGTATACACATAGCTTGCCTTGTATTGAAGCTTGGTTGAAGAGTTTGGGGTTTAATCAGAGTAAGGATGATAGGGCTTTGTGGGTTGTTAATAAGAGTGATTGGTGTGCTCAGCTTTCTCTTGATGTTACTGACCTCTATGTTAGGTATTTGAAGAGTGGACCTGGGAATCTTGAAAAGGATGTAGAGAGGAGATTCAGCTATGCTTTGAGCAGAGAAGACATTGAGAATGCTGTGCTTGGAGGACCATAG

Protein sequence

>Msa0910400

MSTITTLTFTNTTNITFPTSISTKNPIFVTTHFTKSISLQNPLSISFKKPISTIVLCTGSSESESEEPLVPEDEWLQKLPEKTKPLYTHSLPCIEAWLKSLGFNQSKDDRALWVVNKSDWCAQLSLDVTDLYVRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP*