AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1234960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1234960 MtrunA17_Chr8g0337411 97.753 445 10 0 1 445 123 567 0.0 907
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1234960 AT5G64050.1 76.734 447 102 2 1 445 122 568 0.0 737

Find 110 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGCTTAGAGAAATTAAT+TGG 0.191605 8_2:+12755254 Msa1234960:CDS
CTTGAAGGTTAGTTGGAATT+TGG 0.218881 8_2:+12752593 Msa1234960:intron
CTCCAGTATACACAGGTAAA+TGG 0.227579 8_2:+12752130 Msa1234960:CDS
TGTTATCAGATAGACCTTTA+AGG 0.233010 8_2:-12755339 None:intergenic
TAATTGAGAATTCACCTTAA+AGG 0.242514 8_2:+12755325 Msa1234960:exon
TTCCTCTCGGATTGTCTATA+TGG 0.262201 8_2:-12750925 None:intergenic
CTCCTTCACAACATGATCTT+TGG 0.266362 8_2:-12755287 None:intergenic
AAACTCCATGGACCAGATAT+TGG 0.289795 8_2:+12755145 Msa1234960:CDS
CCCGGCGTTGGTGGAGATTA+TGG 0.295339 8_2:+12750901 Msa1234960:CDS
GCCCATTTACCTGTGTATAC+TGG 0.307145 8_2:-12752132 None:intergenic
AATAACTACCTAGCATTATT+AGG 0.308600 8_2:+12753557 Msa1234960:CDS
AACTCCATGGACCAGATATT+GGG 0.325552 8_2:+12755146 Msa1234960:CDS
AAGGCAAGCATTAATATATA+AGG 0.340829 8_2:+12752833 Msa1234960:CDS
AATGCTTGCCTTAGAGTGTT+TGG 0.346726 8_2:-12752822 None:intergenic
AGCATTTACCAAACACTCTA+AGG 0.371459 8_2:+12752814 Msa1234960:CDS
TTCCTTTGGGGACACGAAAC+CGG 0.372161 8_2:-12752212 None:intergenic
TTTCTCATACCTTAACTTTG+TGG 0.378402 8_2:-12753777 None:intergenic
CCAACGCTCTCCGATAAGTT+TGG 0.379102 8_2:-12754164 None:intergenic
GTTGTCTTGCTTTATCAAGC+TGG 0.380884 8_2:+12755175 Msa1234960:CDS
TGTCTTGCAGTACAGGGAAA+TGG 0.392625 8_2:+12753514 Msa1234960:intron
CTTTATCAAGCTGGGACTAC+TGG 0.394232 8_2:+12755184 Msa1234960:CDS
GTCACACAAAAGTTATAAAC+TGG 0.398381 8_2:-12752657 None:intergenic
ACACGAAACCGGAATGTATA+AGG 0.398758 8_2:-12752201 None:intergenic
TACTTCCGCATCTGTTGCAT+TGG 0.399870 8_2:-12752154 None:intergenic
ACAACAGCAGCCCCAATATC+TGG 0.408749 8_2:-12755157 None:intergenic
GAGGAGATGACCAAACTTAT+CGG 0.415388 8_2:+12754154 Msa1234960:CDS
AGGTCTATCTGATAACACTA+TGG 0.418993 8_2:+12755345 Msa1234960:three_prime_UTR
TTAGTGTCTTGAAGGTTAGT+TGG 0.421536 8_2:+12752586 Msa1234960:intron
TTTGATAATTTACTCCGATC+AGG 0.422875 8_2:-12752998 None:intergenic
CTCAGGAAGATTATCTTGTA+TGG 0.423486 8_2:-12754687 None:intergenic
TTTACTAACCAAGTTTATCA+AGG 0.429565 8_2:-12753613 None:intergenic
AAGGAACTCCTTATACATTC+CGG 0.433331 8_2:+12752193 Msa1234960:CDS
TTGTCTTGCTTTATCAAGCT+GGG 0.434211 8_2:+12755176 Msa1234960:CDS
AATGCTTAGAGAAATTAATT+GGG 0.440402 8_2:+12755255 Msa1234960:CDS
TTCTTCACCCTTGATAAACT+TGG 0.445148 8_2:+12753605 Msa1234960:CDS
GGAATTAATAAACCTACTTA+AGG 0.452227 8_2:+12754383 Msa1234960:intron
TGGAAGAAGGCCAAGCTGGC+TGG 0.452251 8_2:+12754762 Msa1234960:CDS
GTCTTGCAGTACAGGGAAAT+GGG 0.453860 8_2:+12753515 Msa1234960:intron
TCCAGTATACACAGGTAAAT+GGG 0.457318 8_2:+12752131 Msa1234960:CDS
GCATTATTAGGCTGGGGCGA+TGG 0.457367 8_2:+12753569 Msa1234960:CDS
ACTACCTAGCATTATTAGGC+TGG 0.467068 8_2:+12753561 Msa1234960:CDS
TGGCTATTTCTCATGTCATC+AGG 0.478083 8_2:+12752697 Msa1234960:CDS
ATCATATGCAGCCAAGAAGC+TGG 0.479763 8_2:-12754717 None:intergenic
TGGAGCAACATCAGTTGGTC+AGG 0.479769 8_2:+12753027 Msa1234960:CDS
AAGGGTGAAGAACTCATTAT+CGG 0.481496 8_2:-12753594 None:intergenic
ATTGTCACAAAGCTAACTTC+AGG 0.482993 8_2:-12755217 None:intergenic
AGGTAGTTATTCATTGCCTC+AGG 0.487426 8_2:-12753545 None:intergenic
GCACTGGAAGAAGGCCAAGC+TGG 0.487463 8_2:+12754758 Msa1234960:CDS
CATTATTAGGCTGGGGCGAT+GGG 0.487625 8_2:+12753570 Msa1234960:CDS
GGAGAGCGTTGGAAGACATC+TGG 0.488582 8_2:+12754175 Msa1234960:CDS
AGTCAATCCCATCCTTAAGT+AGG 0.493647 8_2:-12754395 None:intergenic
CGGTGATCTTGTAGGTGCAC+TGG 0.494622 8_2:+12754742 Msa1234960:CDS
CTTGTAGGTGCACTGGAAGA+AGG 0.498516 8_2:+12754749 Msa1234960:CDS
CTACCTAGCATTATTAGGCT+GGG 0.502951 8_2:+12753562 Msa1234960:CDS
TATGATAGCGGTGATCTTGT+AGG 0.506629 8_2:+12754734 Msa1234960:CDS
TGCGGAAGTAGAAGAAGAGC+TGG 0.513905 8_2:+12752167 Msa1234960:CDS
TTTGTGATAATGAGGAGTAA+TGG 0.513954 8_2:+12752630 Msa1234960:CDS
TCGCTGCTTCTGTTCTAATG+AGG 0.520054 8_2:+12750999 Msa1234960:CDS
CCATAATCTCCACCAACGCC+GGG 0.524540 8_2:-12750901 None:intergenic
AGTTGGAATTTGGATACACT+TGG 0.527187 8_2:+12752603 Msa1234960:CDS
TAATAAACCTACTTAAGGAT+GGG 0.527201 8_2:+12754388 Msa1234960:CDS
AAGAAGCTGGCACAAAACTC+AGG 0.529754 8_2:-12754704 None:intergenic
TTAATAAACCTACTTAAGGA+TGG 0.530398 8_2:+12754387 Msa1234960:CDS
ACCATAATCTCCACCAACGC+CGG 0.533854 8_2:-12750902 None:intergenic
GTAGAAGAAGAGCTGGCAAA+AGG 0.534380 8_2:+12752174 Msa1234960:CDS
CAGCCCCAATATCTGGTCCA+TGG 0.545003 8_2:-12755150 None:intergenic
GCTGAGAAACTACTTCAATC+CGG 0.545585 8_2:+12750967 Msa1234960:CDS
GGCTTCCTCACAATATCAGA+AGG 0.547357 8_2:+12754196 Msa1234960:CDS
CCGATCAGGAGCTAAAATCA+AGG 0.549316 8_2:-12752984 None:intergenic
CCACTTCGGCTCCTACTGAC+CGG 0.557406 8_2:+12755121 Msa1234960:CDS
TTGGATCTTACATCAACAAA+GGG 0.558378 8_2:-12754220 None:intergenic
AGTTTGGTCATCTCCTCTGA+TGG 0.559003 8_2:-12754148 None:intergenic
AATCACTCTTCATGCCACTT+CGG 0.560806 8_2:+12755107 Msa1234960:CDS
AACGTGTGCAAAATGAGGCA+TGG 0.561895 8_2:-12752960 None:intergenic
TTACTAACCAAGTTTATCAA+GGG 0.562268 8_2:-12753612 None:intergenic
CGACATGGAGCAACATCAGT+TGG 0.565377 8_2:+12753022 Msa1234960:CDS
CTACTGACCGGAAAACTCCA+TGG 0.570865 8_2:+12755133 Msa1234960:CDS
AAGGAAACGTGTGCAAAATG+AGG 0.574116 8_2:-12752965 None:intergenic
ACGTGTGCAAAATGAGGCAT+GGG 0.576196 8_2:-12752959 None:intergenic
ATTGGATCTTACATCAACAA+AGG 0.578328 8_2:-12754221 None:intergenic
TTCCGGTTTCGTGTCCCCAA+AGG 0.578886 8_2:+12752210 Msa1234960:CDS
GTCCAAAGATCATGTTGTGA+AGG 0.579139 8_2:+12755285 Msa1234960:CDS
TACCTAGCATTATTAGGCTG+GGG 0.586950 8_2:+12753563 Msa1234960:CDS
CGGCAAATCAACTAAGCGCA+AGG 0.588201 8_2:+12754805 Msa1234960:CDS
TTTGTACATAGAATTCCTCT+CGG 0.592806 8_2:-12750938 None:intergenic
CCGGTCAGTAGGAGCCGAAG+TGG 0.598440 8_2:-12755121 None:intergenic
CGCCCCAGCCTAATAATGCT+AGG 0.598880 8_2:-12753565 None:intergenic
ATTGAACGTGTGAACAAAAG+TGG 0.605324 8_2:+12753740 Msa1234960:CDS
CTCTACATTCTACTTTACAA+AGG 0.608024 8_2:+12754463 Msa1234960:CDS
TTTAAGAGCACGTCCATCAG+AGG 0.610376 8_2:+12754135 Msa1234960:CDS
CCAAACTTATCGGAGAGCGT+TGG 0.614591 8_2:+12754164 Msa1234960:CDS
TACTGACTTAATACGAGGCG+AGG 0.616955 8_2:+12752245 Msa1234960:CDS
TTATTTGTAATTCAGAGCAG+AGG 0.618259 8_2:+12752791 Msa1234960:intron
GAAGCAGCGATAAACTTGAC+CGG 0.624608 8_2:-12750986 None:intergenic
ACAGGAACTAGAGAAAATGA+AGG 0.637969 8_2:+12752083 Msa1234960:intron
ATGGGCCAATGCAACAGATG+CGG 0.639881 8_2:+12752149 Msa1234960:CDS
ACTCCATGGACCAGATATTG+GGG 0.648416 8_2:+12755147 Msa1234960:CDS
CTTTGTAAAGTAGAATGTAG+AGG 0.650160 8_2:-12754462 None:intergenic
TTCTTGGCTGCATATGATAG+CGG 0.655113 8_2:+12754722 Msa1234960:CDS
CATTTACCTGTGTATACTGG+AGG 0.661670 8_2:-12752129 None:intergenic
GCTTCCTCACAATATCAGAA+GGG 0.663856 8_2:+12754197 Msa1234960:CDS
AAAATTACTGACTTAATACG+AGG 0.667921 8_2:+12752240 Msa1234960:CDS
AGTTATTCATTGCCTCAGGT+AGG 0.669899 8_2:-12753541 None:intergenic
AGGGCCCTTCTGATATTGTG+AGG 0.669985 8_2:-12754201 None:intergenic
GACGGTTGATGATGCTACCA+TGG 0.683136 8_2:+12752677 Msa1234960:CDS
AGTAAATTATCAAAGCGACA+TGG 0.695261 8_2:+12753007 Msa1234960:CDS
GATGACATGAGAAATAGCCA+TGG 0.699335 8_2:-12752694 None:intergenic
AATTTACCTCCAGTATACAC+AGG 0.700139 8_2:+12752123 Msa1234960:CDS
GTCCATATAGACAATCCGAG+AGG 0.749921 8_2:+12750923 Msa1234960:CDS
GGAAATGGGATACCTACCTG+AGG 0.749952 8_2:+12753529 Msa1234960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAGGATAA+GGG - chr8_2:12752293-12752312 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAGGATA+AGG - chr8_2:12752294-12752313 None:intergenic 10.0%
!!! ATTTTATTTTTTTTGATCTT+AGG + chr8_2:12753115-12753134 Msa1234960:intron 10.0%
!!! TTTTATTTTTTTTGATCTTA+GGG + chr8_2:12753116-12753135 Msa1234960:intron 10.0%
!! TGTAAAAAGTTATTAATATA+GGG + chr8_2:12753264-12753283 Msa1234960:intron 10.0%
!! ATTATTATTTATTTATTGGA+AGG - chr8_2:12754060-12754079 None:intergenic 10.0%
!!! TTTCTTTATACTTTTTAATT+AGG + chr8_2:12754095-12754114 Msa1234960:intron 10.0%
!!! TATGTATATATTAATCTTTT+TGG + chr8_2:12754495-12754514 Msa1234960:intron 10.0%
!! CAAATATATTGTTAAAAAAC+AGG - chr8_2:12751549-12751568 None:intergenic 15.0%
!!! TATCTTGGTATTTTTTTTTA+AGG + chr8_2:12752316-12752335 Msa1234960:intron 15.0%
!!! ATTTTTTTTTAAGGTATGAT+TGG + chr8_2:12752325-12752344 Msa1234960:intron 15.0%
!! TCTGAATTACAAATAATTTA+TGG - chr8_2:12752787-12752806 None:intergenic 15.0%
!! CTGTAAAAAGTTATTAATAT+AGG + chr8_2:12753263-12753282 Msa1234960:intron 15.0%
!!! TGCAATACATTTTTTTTTTA+TGG - chr8_2:12753816-12753835 None:intergenic 15.0%
!! TTATTTATTCATAGAAAGTA+GGG - chr8_2:12753843-12753862 None:intergenic 15.0%
!! TTTATTTATTCATAGAAAGT+AGG - chr8_2:12753844-12753863 None:intergenic 15.0%
!!! TTTCCTTTATACTTTTAATT+AGG + chr8_2:12754264-12754283 Msa1234960:intron 15.0%
!!! GGCTTTTTTTTTTTAAATTT+CGG + chr8_2:12754587-12754606 Msa1234960:intron 15.0%
!!! CATTTCTTTAATCAAATTTT+TGG + chr8_2:12754899-12754918 Msa1234960:intron 15.0%
!!! AAATATGTTGATAATCTTAT+AGG + chr8_2:12755081-12755100 Msa1234960:intron 15.0%
!!! AATATGTTGATAATCTTATA+GGG + chr8_2:12755082-12755101 Msa1234960:intron 15.0%
!!! CTTATAATGTTTTTATAAGA+AGG + chr8_2:12755594-12755613 Msa1234960:three_prime_UTR 15.0%
!! AGTATTATAACAACATAGAT+TGG + chr8_2:12751324-12751343 Msa1234960:intron 20.0%
!!! TTCTATTTTCAATATATGGA+GGG - chr8_2:12751468-12751487 None:intergenic 20.0%
!!! TTTCTATTTTCAATATATGG+AGG - chr8_2:12751469-12751488 None:intergenic 20.0%
!!! CTGTTTCTATTTTCAATATA+TGG - chr8_2:12751472-12751491 None:intergenic 20.0%
!! TTTAACAATATATTTGACCT+AGG + chr8_2:12751553-12751572 Msa1234960:intron 20.0%
!! TTAACAATATATTTGACCTA+GGG + chr8_2:12751554-12751573 Msa1234960:intron 20.0%
!!! AATTTTATTTGTCTTTACAC+AGG + chr8_2:12752065-12752084 Msa1234960:intron 20.0%
!!! TAATTTTTAAACTTCCTTTG+GGG - chr8_2:12752227-12752246 None:intergenic 20.0%
!!! GTAATTTTTAAACTTCCTTT+GGG - chr8_2:12752228-12752247 None:intergenic 20.0%
!!! AGTAATTTTTAAACTTCCTT+TGG - chr8_2:12752229-12752248 None:intergenic 20.0%
!!! TATAATCTTTTATAGCATCT+TGG + chr8_2:12752877-12752896 Msa1234960:intron 20.0%
!!! TTTAGTTCCTATATAAATCT+TGG + chr8_2:12753185-12753204 Msa1234960:intron 20.0%
!! ATTAATATAGGGACTAAAAT+TGG + chr8_2:12753275-12753294 Msa1234960:intron 20.0%
!! GAGCTTACATTATAAATTAA+AGG - chr8_2:12753440-12753459 None:intergenic 20.0%
!! TTACTATATTGAAGATAAAG+TGG + chr8_2:12753886-12753905 Msa1234960:intron 20.0%
!! TACTATATTGAAGATAAAGT+GGG + chr8_2:12753887-12753906 Msa1234960:intron 20.0%
!!! CTTTATACTTTTTAATTAGG+TGG + chr8_2:12754098-12754117 Msa1234960:intron 20.0%
!! AAGAAAATATAAACGAACAA+GGG - chr8_2:12754879-12754898 None:intergenic 20.0%
!! AAATGCTTAGAGAAATTAAT+TGG + chr8_2:12755254-12755273 Msa1234960:CDS 20.0%
!! AATGCTTAGAGAAATTAATT+GGG + chr8_2:12755255-12755274 Msa1234960:CDS 20.0%
!!! TATTTTCCCTGTTATAATTT+TGG + chr8_2:12755462-12755481 Msa1234960:three_prime_UTR 20.0%
!! CAAAAACCAAAATTATAACA+GGG - chr8_2:12755471-12755490 None:intergenic 20.0%
!! TCAAAAACCAAAATTATAAC+AGG - chr8_2:12755472-12755491 None:intergenic 20.0%
!! CAAAAAAACAAAAATCACTT+GGG - chr8_2:12755523-12755542 None:intergenic 20.0%
!! ACAAAAAAACAAAAATCACT+TGG - chr8_2:12755524-12755543 None:intergenic 20.0%
! CACTCGGTTTAAAAATAAAA+GGG - chr8_2:12751149-12751168 None:intergenic 25.0%
! TGGAAAAAGAAAAATCCTTA+AGG + chr8_2:12751173-12751192 Msa1234960:intron 25.0%
!! TACAAAATCCCTCTAATTTT+GGG - chr8_2:12751407-12751426 None:intergenic 25.0%
!! ATACAAAATCCCTCTAATTT+TGG - chr8_2:12751408-12751427 None:intergenic 25.0%
! AGGTACACATTCAAAAAAAT+AGG - chr8_2:12751930-12751949 None:intergenic 25.0%
!! TTTTTGAATGTGTACCTTTT+AGG + chr8_2:12751933-12751952 Msa1234960:intron 25.0%
!!! AAAATTACTGACTTAATACG+AGG + chr8_2:12752240-12752259 Msa1234960:CDS 25.0%
! AAAAAAAAAAAGGATAAGGG+CGG - chr8_2:12752290-12752309 None:intergenic 25.0%
!!! TACTTCATTTTTGAACTACA+TGG - chr8_2:12752363-12752382 None:intergenic 25.0%
!! AGTTTATAACTTTTGTGTGA+CGG + chr8_2:12752659-12752678 Msa1234960:CDS 25.0%
! AAGGCAAGCATTAATATATA+AGG + chr8_2:12752833-12752852 Msa1234960:CDS 25.0%
!!! ATCGTTCTTAAAGTTTTATG+AGG + chr8_2:12753078-12753097 Msa1234960:intron 25.0%
! ATAAGGACCAAGATTTATAT+AGG - chr8_2:12753195-12753214 None:intergenic 25.0%
! AATAACTACCTAGCATTATT+AGG + chr8_2:12753557-12753576 Msa1234960:CDS 25.0%
! TTACTAACCAAGTTTATCAA+GGG - chr8_2:12753615-12753634 None:intergenic 25.0%
! TTTACTAACCAAGTTTATCA+AGG - chr8_2:12753616-12753635 None:intergenic 25.0%
! TAAACTTGGTTAGTAAATTC+TGG + chr8_2:12753619-12753638 Msa1234960:intron 25.0%
!! AAGTTGTGAAAACATTTTTC+TGG - chr8_2:12753672-12753691 None:intergenic 25.0%
!!! TTTTTGATTCCACAAAGTTA+AGG + chr8_2:12753768-12753787 Msa1234960:CDS 25.0%
! TTCAATATAGTAAAACCATG+AGG - chr8_2:12753879-12753898 None:intergenic 25.0%
! ATCTTAAAGTTGCTTATAAC+AGG + chr8_2:12753919-12753938 Msa1234960:intron 25.0%
!!! TTTTTAATTAGGTGGATGAA+TGG + chr8_2:12754106-12754125 Msa1234960:intron 25.0%
!! CCACCTAATTAAAAGTATAA+AGG - chr8_2:12754270-12754289 None:intergenic 25.0%
!!! CCTTTATACTTTTAATTAGG+TGG + chr8_2:12754267-12754286 Msa1234960:intron 25.0%
!!! TTATACTTTTAATTAGGTGG+AGG + chr8_2:12754270-12754289 Msa1234960:intron 25.0%
! CACACTAAATAAATCACAAT+TGG - chr8_2:12754342-12754361 None:intergenic 25.0%
! CAATTGTGATTTATTTAGTG+TGG + chr8_2:12754340-12754359 Msa1234960:intron 25.0%
! GGAATTAATAAACCTACTTA+AGG + chr8_2:12754383-12754402 Msa1234960:intron 25.0%
! TTAATAAACCTACTTAAGGA+TGG + chr8_2:12754387-12754406 Msa1234960:CDS 25.0%
! TAATAAACCTACTTAAGGAT+GGG + chr8_2:12754388-12754407 Msa1234960:CDS 25.0%
! GATATTCCTAATTGTATCAT+TGG + chr8_2:12754517-12754536 Msa1234960:intron 25.0%
!! CAATCATGTTCAATTTTAGA+AGG - chr8_2:12754543-12754562 None:intergenic 25.0%
! ACAATCAATAAAAGGAGATA+TGG - chr8_2:12754624-12754643 None:intergenic 25.0%
! GAAGAAAATATAAACGAACA+AGG - chr8_2:12754880-12754899 None:intergenic 25.0%
! TAATTGAGAATTCACCTTAA+AGG + chr8_2:12755325-12755344 Msa1234960:exon 25.0%
!!! AGTACCAATTTGTTTTTGTT+GGG + chr8_2:12755426-12755445 Msa1234960:three_prime_UTR 25.0%
TTTGTACATAGAATTCCTCT+CGG - chr8_2:12750941-12750960 None:intergenic 30.0%
TGACAATCTCTTACTTGTAA+TGG + chr8_2:12751037-12751056 Msa1234960:intron 30.0%
! ATCTCTTACTTGTAATGGAA+TGG + chr8_2:12751042-12751061 Msa1234960:intron 30.0%
! AACTATGTGTGATGTGTTTT+AGG + chr8_2:12751097-12751116 Msa1234960:intron 30.0%
! ACTATGTGTGATGTGTTTTA+GGG + chr8_2:12751098-12751117 Msa1234960:intron 30.0%
!!! ATGTGTTTTAGGGAAACTTA+AGG + chr8_2:12751108-12751127 Msa1234960:intron 30.0%
!!! TGTGTTTTAGGGAAACTTAA+GGG + chr8_2:12751109-12751128 Msa1234960:intron 30.0%
ATAAAAGGGATACATGCAAA+TGG - chr8_2:12751135-12751154 None:intergenic 30.0%
GCACTCGGTTTAAAAATAAA+AGG - chr8_2:12751150-12751169 None:intergenic 30.0%
! ATTTTTAAACCGAGTGCATT+TGG + chr8_2:12751153-12751172 Msa1234960:intron 30.0%
! TTTCTTTTTCCAAATGCACT+CGG - chr8_2:12751165-12751184 None:intergenic 30.0%
!! AAAATCCTTAAGGCTTTGTT+TGG + chr8_2:12751183-12751202 Msa1234960:intron 30.0%
!! AAATCCTTAAGGCTTTGTTT+GGG + chr8_2:12751184-12751203 Msa1234960:intron 30.0%
TCTACCAAATCACTCAAATA+AGG - chr8_2:12751261-12751280 None:intergenic 30.0%
! ACAAAATCCCTCTAATTTTG+GGG - chr8_2:12751406-12751425 None:intergenic 30.0%
! TTCAATATATGGAGGGTTTT+AGG - chr8_2:12751461-12751480 None:intergenic 30.0%
!! CTAGTTGATAAGCTCAAATA+AGG - chr8_2:12751593-12751612 None:intergenic 30.0%
AATAAGCTGTTTATCCAAAC+AGG + chr8_2:12751782-12751801 Msa1234960:intron 30.0%
ATAAGCTGTTTATCCAAACA+GGG + chr8_2:12751783-12751802 Msa1234960:intron 30.0%
!! TTATTTTGCATCCATTCAAC+TGG + chr8_2:12751862-12751881 Msa1234960:intron 30.0%
TGAACTAAAAACCAGTTGAA+TGG - chr8_2:12751876-12751895 None:intergenic 30.0%
!!! CTGGTTTTTAGTTCAGTTTA+TGG + chr8_2:12751881-12751900 Msa1234960:intron 30.0%
ATCTCGTACTTATTCCTAAA+AGG - chr8_2:12751950-12751969 None:intergenic 30.0%
ATATACATGCTTCAAACTAG+AGG - chr8_2:12752018-12752037 None:intergenic 30.0%
! ATTTTTGAACTACATGGAGT+AGG - chr8_2:12752357-12752376 None:intergenic 30.0%
! CAGTTGACTTATGAATATGA+AGG - chr8_2:12752408-12752427 None:intergenic 30.0%
TTTCTTTGTTAGTGTCTTGA+AGG + chr8_2:12752578-12752597 Msa1234960:intron 30.0%
!! TTGGAGATTTTGTGATAATG+AGG + chr8_2:12752622-12752641 Msa1234960:CDS 30.0%
! TTTGTGATAATGAGGAGTAA+TGG + chr8_2:12752630-12752649 Msa1234960:CDS 30.0%
GTCACACAAAAGTTATAAAC+TGG - chr8_2:12752660-12752679 None:intergenic 30.0%
TTATTTGTAATTCAGAGCAG+AGG + chr8_2:12752791-12752810 Msa1234960:intron 30.0%
! TTTGATAATTTACTCCGATC+AGG - chr8_2:12753001-12753020 None:intergenic 30.0%
AGTAAATTATCAAAGCGACA+TGG + chr8_2:12753007-12753026 Msa1234960:CDS 30.0%
! ACTTTAAGAACGATGTAATC+AGG - chr8_2:12753072-12753091 None:intergenic 30.0%
GTTCCTATTAAAGCAGAATA+AGG - chr8_2:12753212-12753231 None:intergenic 30.0%
ATAAAGCTTCTTCTCTTCTA+AGG + chr8_2:12753462-12753481 Msa1234960:intron 30.0%
TAAAGCTTCTTCTCTTCTAA+GGG + chr8_2:12753463-12753482 Msa1234960:intron 30.0%
TTTCTCATACCTTAACTTTG+TGG - chr8_2:12753780-12753799 None:intergenic 30.0%
AGTTGCTTATAACAGGTAAT+AGG + chr8_2:12753926-12753945 Msa1234960:intron 30.0%
ATAACAGGTAATAGGATGTA+TGG + chr8_2:12753934-12753953 Msa1234960:intron 30.0%
TTGGATCTTACATCAACAAA+GGG - chr8_2:12754223-12754242 None:intergenic 30.0%
ATTGGATCTTACATCAACAA+AGG - chr8_2:12754224-12754243 None:intergenic 30.0%
GAATCAAGTATGCAAGTAAT+TGG - chr8_2:12754242-12754261 None:intergenic 30.0%
CTTTGTAAAGTAGAATGTAG+AGG - chr8_2:12754465-12754484 None:intergenic 30.0%
CTCTACATTCTACTTTACAA+AGG + chr8_2:12754463-12754482 Msa1234960:CDS 30.0%
AAGTTGGCACAATCAATAAA+AGG - chr8_2:12754632-12754651 None:intergenic 30.0%
TGCTAACATAGTTGGAATAT+CGG + chr8_2:12754950-12754969 Msa1234960:intron 30.0%
AAAAGTAAAATGACATGCAC+AGG - chr8_2:12754998-12755017 None:intergenic 30.0%
TGTTATCAGATAGACCTTTA+AGG - chr8_2:12755342-12755361 None:intergenic 30.0%
!!! GAGTACCAATTTGTTTTTGT+TGG + chr8_2:12755425-12755444 Msa1234960:three_prime_UTR 30.0%
AAAAACAAAAATCACTTGGG+AGG - chr8_2:12755520-12755539 None:intergenic 30.0%
! CACACCTTATTTGAGTGATT+TGG + chr8_2:12751254-12751273 Msa1234960:intron 35.0%
!! TTGAGTGATTTGGTAGAGAA+TGG + chr8_2:12751264-12751283 Msa1234960:intron 35.0%
! TACAGGACAAGGATTTTGAA+GGG - chr8_2:12751370-12751389 None:intergenic 35.0%
CTCAAAAAATGTACAGGACA+AGG - chr8_2:12751381-12751400 None:intergenic 35.0%
! TTTGAGTTCCCCAAAATTAG+AGG + chr8_2:12751395-12751414 Msa1234960:intron 35.0%
TTGAGTTCCCCAAAATTAGA+GGG + chr8_2:12751396-12751415 Msa1234960:intron 35.0%
!!! ATATATGGAGGGTTTTAGGA+GGG - chr8_2:12751457-12751476 None:intergenic 35.0%
!!! AATATATGGAGGGTTTTAGG+AGG - chr8_2:12751458-12751477 None:intergenic 35.0%
ATGATCTGTGATGATAGCAT+CGG + chr8_2:12751497-12751516 Msa1234960:intron 35.0%
AATAGGAAACCTTGCTGAAA+AGG - chr8_2:12751913-12751932 None:intergenic 35.0%
ACAGGAACTAGAGAAAATGA+AGG + chr8_2:12752083-12752102 Msa1234960:intron 35.0%
AATTTACCTCCAGTATACAC+AGG + chr8_2:12752123-12752142 Msa1234960:CDS 35.0%
TCCAGTATACACAGGTAAAT+GGG + chr8_2:12752131-12752150 Msa1234960:CDS 35.0%
AAGGAACTCCTTATACATTC+CGG + chr8_2:12752193-12752212 Msa1234960:CDS 35.0%
CATTAATCCACTGTTTCGAA+GGG - chr8_2:12752472-12752491 None:intergenic 35.0%
ACATTAATCCACTGTTTCGA+AGG - chr8_2:12752473-12752492 None:intergenic 35.0%
TTAGTGTCTTGAAGGTTAGT+TGG + chr8_2:12752586-12752605 Msa1234960:intron 35.0%
! CTTGAAGGTTAGTTGGAATT+TGG + chr8_2:12752593-12752612 Msa1234960:intron 35.0%
AGTTGGAATTTGGATACACT+TGG + chr8_2:12752603-12752622 Msa1234960:CDS 35.0%
TTTCTCATGTCATCAGGTAA+TGG + chr8_2:12752703-12752722 Msa1234960:intron 35.0%
AGCATTTACCAAACACTCTA+AGG + chr8_2:12752814-12752833 Msa1234960:CDS 35.0%
ACGATGTAATCAGGAAATGA+TGG - chr8_2:12753063-12753082 None:intergenic 35.0%
GGTCCTTATTCTGCTTTAAT+AGG + chr8_2:12753206-12753225 Msa1234960:intron 35.0%
TAGGAACTGAATACAGATAC+AGG + chr8_2:12753225-12753244 Msa1234960:intron 35.0%
AGGAACTGAATACAGATACA+GGG + chr8_2:12753226-12753245 Msa1234960:intron 35.0%
CAAAACTAGTCGACTGAAAT+TGG - chr8_2:12753402-12753421 None:intergenic 35.0%
AAGGGTGAAGAACTCATTAT+CGG - chr8_2:12753597-12753616 None:intergenic 35.0%
TTCTTCACCCTTGATAAACT+TGG + chr8_2:12753605-12753624 Msa1234960:CDS 35.0%
ATTGAACGTGTGAACAAAAG+TGG + chr8_2:12753740-12753759 Msa1234960:CDS 35.0%
!!! CTTCGAGTGTTTTTGCTATT+AGG + chr8_2:12754004-12754023 Msa1234960:intron 35.0%
ATTAGCAGCAAAACTTTGCA+AGG - chr8_2:12754033-12754052 None:intergenic 35.0%
! GTGTTGTTACATCTTGTAAC+AGG + chr8_2:12754362-12754381 Msa1234960:intron 35.0%
AGAAGGCCAATGATACAATT+AGG - chr8_2:12754526-12754545 None:intergenic 35.0%
GAACATGATTGTGATATGCA+AGG + chr8_2:12754552-12754571 Msa1234960:intron 35.0%
CTCAGGAAGATTATCTTGTA+TGG - chr8_2:12754690-12754709 None:intergenic 35.0%
AAAAATTGGGTCAAAGGCTT+CGG + chr8_2:12754785-12754804 Msa1234960:CDS 35.0%
GGAAAGTCTCAAACATGATT+CGG + chr8_2:12754839-12754858 Msa1234960:intron 35.0%
! CTCAAACATGATTCGGATTT+AGG + chr8_2:12754846-12754865 Msa1234960:intron 35.0%
!!! TTTTGGTTTGCTGTGATTGT+CGG + chr8_2:12754916-12754935 Msa1234960:intron 35.0%
TTAGTGTGTGCTAACATAGT+TGG + chr8_2:12754942-12754961 Msa1234960:intron 35.0%
TTGTCTTGCTTTATCAAGCT+GGG + chr8_2:12755176-12755195 Msa1234960:CDS 35.0%
ATTGTCACAAAGCTAACTTC+AGG - chr8_2:12755220-12755239 None:intergenic 35.0%
AGGTCTATCTGATAACACTA+TGG + chr8_2:12755345-12755364 Msa1234960:three_prime_UTR 35.0%
! GGTTTTGCACTTCTATTTAG+AGG + chr8_2:12755366-12755385 Msa1234960:three_prime_UTR 35.0%
!!! ACCAATTTGTTTTTGTTGGG+AGG + chr8_2:12755429-12755448 Msa1234960:three_prime_UTR 35.0%
ACCTCCCAACAAAAACAAAT+TGG - chr8_2:12755433-12755452 None:intergenic 35.0%
!!! AATTTGTTTTTGTTGGGAGG+TGG + chr8_2:12755432-12755451 Msa1234960:three_prime_UTR 35.0%
TTCCTCTCGGATTGTCTATA+TGG - chr8_2:12750928-12750947 None:intergenic 40.0%
GCTGAGAAACTACTTCAATC+CGG + chr8_2:12750967-12750986 Msa1234960:CDS 40.0%
AACTCCCAAACAAAGCCTTA+AGG - chr8_2:12751191-12751210 None:intergenic 40.0%
!! GCTTTGTTTGGGAGTTTGAA+GGG + chr8_2:12751195-12751214 Msa1234960:intron 40.0%
! CTTTGTTTGGGAGTTTGAAG+GGG + chr8_2:12751196-12751215 Msa1234960:intron 40.0%
! GTACAGGACAAGGATTTTGA+AGG - chr8_2:12751371-12751390 None:intergenic 40.0%
GGGGAACTCAAAAAATGTAC+AGG - chr8_2:12751387-12751406 None:intergenic 40.0%
GAGCACTTGTGACATTCTTT+CGG + chr8_2:12751616-12751635 Msa1234960:intron 40.0%
AAGCTATGCTAGAGAGCTTA+TGG - chr8_2:12751695-12751714 None:intergenic 40.0%
! TTATCCAAACAGGGCATTAC+TGG + chr8_2:12751792-12751811 Msa1234960:intron 40.0%
! TTTTCCAGTAATGCCCTGTT+TGG - chr8_2:12751799-12751818 None:intergenic 40.0%
GAAGAACAAAGCAGTAGCTA+AGG - chr8_2:12751827-12751846 None:intergenic 40.0%
! TGGAAACTTCCTTTTCAGCA+AGG + chr8_2:12751901-12751920 Msa1234960:intron 40.0%
GGAATAAGTACGAGATTGTG+AGG + chr8_2:12751954-12751973 Msa1234960:intron 40.0%
CATTTACCTGTGTATACTGG+AGG - chr8_2:12752132-12752151 None:intergenic 40.0%
CTCCAGTATACACAGGTAAA+TGG + chr8_2:12752130-12752149 Msa1234960:CDS 40.0%
ACACGAAACCGGAATGTATA+AGG - chr8_2:12752204-12752223 None:intergenic 40.0%
GATGACATGAGAAATAGCCA+TGG - chr8_2:12752697-12752716 None:intergenic 40.0%
!! TGGCTATTTCTCATGTCATC+AGG + chr8_2:12752697-12752716 Msa1234960:CDS 40.0%
! AATGCTTGCCTTAGAGTGTT+TGG - chr8_2:12752825-12752844 None:intergenic 40.0%
!!! AGCATCTTGGTCACTGATTT+TGG + chr8_2:12752890-12752909 Msa1234960:intron 40.0%
CTGTGCATGAATCTGTTTAC+AGG + chr8_2:12752925-12752944 Msa1234960:intron 40.0%
AAGGAAACGTGTGCAAAATG+AGG - chr8_2:12752968-12752987 None:intergenic 40.0%
!!! CCTTGATTTTAGCTCCTGAT+CGG + chr8_2:12752984-12753003 Msa1234960:CDS 40.0%
ACTGATATTGTGACACCACT+TGG + chr8_2:12753302-12753321 Msa1234960:intron 40.0%
CTGATATTGTGACACCACTT+GGG + chr8_2:12753303-12753322 Msa1234960:intron 40.0%
AGTTATTCATTGCCTCAGGT+AGG - chr8_2:12753544-12753563 None:intergenic 40.0%
AGGTAGTTATTCATTGCCTC+AGG - chr8_2:12753548-12753567 None:intergenic 40.0%
ACTACCTAGCATTATTAGGC+TGG + chr8_2:12753561-12753580 Msa1234960:CDS 40.0%
CTACCTAGCATTATTAGGCT+GGG + chr8_2:12753562-12753581 Msa1234960:CDS 40.0%
TACCTAGCATTATTAGGCTG+GGG + chr8_2:12753563-12753582 Msa1234960:CDS 40.0%
AAATCCTGTGTTCTTCCTCA+TGG + chr8_2:12753861-12753880 Msa1234960:intron 40.0%
AAAACCATGAGGAAGAACAC+AGG - chr8_2:12753868-12753887 None:intergenic 40.0%
GAGGAGATGACCAAACTTAT+CGG + chr8_2:12754154-12754173 Msa1234960:CDS 40.0%
GCTTCCTCACAATATCAGAA+GGG + chr8_2:12754197-12754216 Msa1234960:CDS 40.0%
AGTCAATCCCATCCTTAAGT+AGG - chr8_2:12754398-12754417 None:intergenic 40.0%
TATGCAAGGCTGTATGAGTT+TGG + chr8_2:12754566-12754585 Msa1234960:intron 40.0%
TTCTTGGCTGCATATGATAG+CGG + chr8_2:12754722-12754741 Msa1234960:CDS 40.0%
!! TATGATAGCGGTGATCTTGT+AGG + chr8_2:12754734-12754753 Msa1234960:CDS 40.0%
! AACATGATTCGGATTTAGGC+CGG + chr8_2:12754850-12754869 Msa1234960:intron 40.0%
TATAAACGAACAAGGGTGAC+CGG - chr8_2:12754872-12754891 None:intergenic 40.0%
! AATCACTCTTCATGCCACTT+CGG + chr8_2:12755107-12755126 Msa1234960:CDS 40.0%
AAACTCCATGGACCAGATAT+TGG + chr8_2:12755145-12755164 Msa1234960:CDS 40.0%
AACTCCATGGACCAGATATT+GGG + chr8_2:12755146-12755165 Msa1234960:CDS 40.0%
GTTGTCTTGCTTTATCAAGC+TGG + chr8_2:12755175-12755194 Msa1234960:CDS 40.0%
GTCCAAAGATCATGTTGTGA+AGG + chr8_2:12755285-12755304 Msa1234960:CDS 40.0%
CTCCTTCACAACATGATCTT+TGG - chr8_2:12755290-12755309 None:intergenic 40.0%
GTCCATATAGACAATCCGAG+AGG + chr8_2:12750923-12750942 Msa1234960:CDS 45.0%
GAAGCAGCGATAAACTTGAC+CGG - chr8_2:12750989-12751008 None:intergenic 45.0%
TCGCTGCTTCTGTTCTAATG+AGG + chr8_2:12750999-12751018 Msa1234960:CDS 45.0%
!! GGCTTTGTTTGGGAGTTTGA+AGG + chr8_2:12751194-12751213 Msa1234960:intron 45.0%
TATTTGACCTAGGGCCTGTT+TGG + chr8_2:12751563-12751582 Msa1234960:intron 45.0%
ATTTGACCTAGGGCCTGTTT+GGG + chr8_2:12751564-12751583 Msa1234960:intron 45.0%
TCAAATAAGGCAGCCCAAAC+AGG - chr8_2:12751580-12751599 None:intergenic 45.0%
GCCCATTTACCTGTGTATAC+TGG - chr8_2:12752135-12752154 None:intergenic 45.0%
TACTTCCGCATCTGTTGCAT+TGG - chr8_2:12752157-12752176 None:intergenic 45.0%
GTAGAAGAAGAGCTGGCAAA+AGG + chr8_2:12752174-12752193 Msa1234960:CDS 45.0%
!! TACTGACTTAATACGAGGCG+AGG + chr8_2:12752245-12752264 Msa1234960:CDS 45.0%
ACGTGTGCAAAATGAGGCAT+GGG - chr8_2:12752962-12752981 None:intergenic 45.0%
AACGTGTGCAAAATGAGGCA+TGG - chr8_2:12752963-12752982 None:intergenic 45.0%
CCGATCAGGAGCTAAAATCA+AGG - chr8_2:12752987-12753006 None:intergenic 45.0%
TATTGTGACACCACTTGGGT+TGG + chr8_2:12753307-12753326 Msa1234960:intron 45.0%
AGTCGACTGAAATTGGTACC+TGG - chr8_2:12753395-12753414 None:intergenic 45.0%
CTGCAAGACAGCAGATATTG+AGG - chr8_2:12753504-12753523 None:intergenic 45.0%
TATCTGCTGTCTTGCAGTAC+AGG + chr8_2:12753507-12753526 Msa1234960:intron 45.0%
ATCTGCTGTCTTGCAGTACA+GGG + chr8_2:12753508-12753527 Msa1234960:intron 45.0%
TGTCTTGCAGTACAGGGAAA+TGG + chr8_2:12753514-12753533 Msa1234960:intron 45.0%
GTCTTGCAGTACAGGGAAAT+GGG + chr8_2:12753515-12753534 Msa1234960:intron 45.0%
! TTTAAGAGCACGTCCATCAG+AGG + chr8_2:12754135-12754154 Msa1234960:CDS 45.0%
AGTTTGGTCATCTCCTCTGA+TGG - chr8_2:12754151-12754170 None:intergenic 45.0%
GGCTTCCTCACAATATCAGA+AGG + chr8_2:12754196-12754215 Msa1234960:CDS 45.0%
! GCCAACTTTCTACTTGTTGC+TGG + chr8_2:12754644-12754663 Msa1234960:intron 45.0%
GCCAGCAACAAGTAGAAAGT+TGG - chr8_2:12754648-12754667 None:intergenic 45.0%
AAGAAGCTGGCACAAAACTC+AGG - chr8_2:12754707-12754726 None:intergenic 45.0%
!! TGAGTTTTGTGCCAGCTTCT+TGG + chr8_2:12754706-12754725 Msa1234960:CDS 45.0%
ATCATATGCAGCCAAGAAGC+TGG - chr8_2:12754720-12754739 None:intergenic 45.0%
CCAAGCTGGCTGGAAAAATT+GGG + chr8_2:12754772-12754791 Msa1234960:CDS 45.0%
GGCTGGAAAAATTGGGTCAA+AGG + chr8_2:12754779-12754798 Msa1234960:CDS 45.0%
AATGACATGCACAGGCAATC+AGG - chr8_2:12754990-12755009 None:intergenic 45.0%
! ATCTGGTCCATGGAGTTTTC+CGG - chr8_2:12755143-12755162 None:intergenic 45.0%
ACTCCATGGACCAGATATTG+GGG + chr8_2:12755147-12755166 Msa1234960:CDS 45.0%
CTTTATCAAGCTGGGACTAC+TGG + chr8_2:12755184-12755203 Msa1234960:CDS 45.0%
!! GATAAAAAAAAAAAAAAAAA+AGG - chr8_2:12752300-12752319 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTATCT+TGG + chr8_2:12752301-12752320 Msa1234960:intron 5.0%
!! ATACATTATTATTTATTTAT+TGG - chr8_2:12754064-12754083 None:intergenic 5.0%
ACCATAATCTCCACCAACGC+CGG - chr8_2:12750905-12750924 None:intergenic 50.0%
TGTTTGGGAGTTTGAAGGGG+AGG + chr8_2:12751199-12751218 Msa1234960:intron 50.0%
GTTTGGGAGTTTGAAGGGGA+GGG + chr8_2:12751200-12751219 Msa1234960:intron 50.0%
TTTGGGAGTTTGAAGGGGAG+GGG + chr8_2:12751201-12751220 Msa1234960:intron 50.0%
ATGGGCCAATGCAACAGATG+CGG + chr8_2:12752149-12752168 Msa1234960:CDS 50.0%
TGCGGAAGTAGAAGAAGAGC+TGG + chr8_2:12752167-12752186 Msa1234960:CDS 50.0%
! TTCCTTTGGGGACACGAAAC+CGG - chr8_2:12752215-12752234 None:intergenic 50.0%
CCACTGTTTCGAAGGGATCA+TGG - chr8_2:12752465-12752484 None:intergenic 50.0%
CCATGATCCCTTCGAAACAG+TGG + chr8_2:12752462-12752481 Msa1234960:intron 50.0%
!! GACGGTTGATGATGCTACCA+TGG + chr8_2:12752677-12752696 Msa1234960:CDS 50.0%
CGACATGGAGCAACATCAGT+TGG + chr8_2:12753022-12753041 Msa1234960:CDS 50.0%
TGGAGCAACATCAGTTGGTC+AGG + chr8_2:12753027-12753046 Msa1234960:CDS 50.0%
ATCGAACCTGAGACCTTGAG+AGG - chr8_2:12753368-12753387 None:intergenic 50.0%
GTCTCAGGTTCGATTCTTCC+AGG + chr8_2:12753374-12753393 Msa1234960:intron 50.0%
GGAAATGGGATACCTACCTG+AGG + chr8_2:12753529-12753548 Msa1234960:CDS 50.0%
CATTATTAGGCTGGGGCGAT+GGG + chr8_2:12753570-12753589 Msa1234960:CDS 50.0%
CCAACGCTCTCCGATAAGTT+TGG - chr8_2:12754167-12754186 None:intergenic 50.0%
! CCAAACTTATCGGAGAGCGT+TGG + chr8_2:12754164-12754183 Msa1234960:CDS 50.0%
AGGGCCCTTCTGATATTGTG+AGG - chr8_2:12754204-12754223 None:intergenic 50.0%
CTTGTAGGTGCACTGGAAGA+AGG + chr8_2:12754749-12754768 Msa1234960:CDS 50.0%
GCCAAGCTGGCTGGAAAAAT+TGG + chr8_2:12754771-12754790 Msa1234960:CDS 50.0%
! CCCAATTTTTCCAGCCAGCT+TGG - chr8_2:12754775-12754794 None:intergenic 50.0%
CGGCAAATCAACTAAGCGCA+AGG + chr8_2:12754805-12754824 Msa1234960:CDS 50.0%
TAAGCGCAAGGTGAGCTGAA+TGG + chr8_2:12754817-12754836 Msa1234960:intron 50.0%
AAGCGCAAGGTGAGCTGAAT+GGG + chr8_2:12754818-12754837 Msa1234960:intron 50.0%
! CATGGAGTTTTCCGGTCAGT+AGG - chr8_2:12755135-12755154 None:intergenic 50.0%
CTACTGACCGGAAAACTCCA+TGG + chr8_2:12755133-12755152 Msa1234960:CDS 50.0%
ACAACAGCAGCCCCAATATC+TGG - chr8_2:12755160-12755179 None:intergenic 50.0%
CCATAATCTCCACCAACGCC+GGG - chr8_2:12750904-12750923 None:intergenic 55.0%
!!! GGAGGGTTTTAGGAGGGCTT+TGG - chr8_2:12751451-12751470 None:intergenic 55.0%
TTCCGGTTTCGTGTCCCCAA+AGG + chr8_2:12752210-12752229 Msa1234960:CDS 55.0%
!! TGGTGTTGGCTTGGGACCTT+GGG + chr8_2:12753335-12753354 Msa1234960:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + chr8_2:12753359-12753378 Msa1234960:intron 55.0%
CGCCCCAGCCTAATAATGCT+AGG - chr8_2:12753568-12753587 None:intergenic 55.0%
GCATTATTAGGCTGGGGCGA+TGG + chr8_2:12753569-12753588 Msa1234960:CDS 55.0%
!! GGAGAGCGTTGGAAGACATC+TGG + chr8_2:12754175-12754194 Msa1234960:CDS 55.0%
CGGTGATCTTGTAGGTGCAC+TGG + chr8_2:12754742-12754761 Msa1234960:CDS 55.0%
CAGCCCCAATATCTGGTCCA+TGG - chr8_2:12755153-12755172 None:intergenic 55.0%
!! CCCGGCGTTGGTGGAGATTA+TGG + chr8_2:12750901-12750920 Msa1234960:CDS 60.0%
GGAGTTTGAAGGGGAGGGGA+GGG + chr8_2:12751205-12751224 Msa1234960:intron 60.0%
GAGTTTGAAGGGGAGGGGAG+GGG + chr8_2:12751206-12751225 Msa1234960:intron 60.0%
!! TGACACCACTTGGGTTGGCC+TGG + chr8_2:12753312-12753331 Msa1234960:intron 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG + chr8_2:12753321-12753340 Msa1234960:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG + chr8_2:12753326-12753345 Msa1234960:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG + chr8_2:12753327-12753346 Msa1234960:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + chr8_2:12753334-12753353 Msa1234960:intron 60.0%
!! GGTGTTGGCTTGGGACCTTG+GGG + chr8_2:12753336-12753355 Msa1234960:intron 60.0%
! CTTGAGAGGAGCACACCCCA+AGG - chr8_2:12753354-12753373 None:intergenic 60.0%
CTTGGGGTGTGCTCCTCTCA+AGG + chr8_2:12753352-12753371 Msa1234960:intron 60.0%
GCACTGGAAGAAGGCCAAGC+TGG + chr8_2:12754758-12754777 Msa1234960:CDS 60.0%
TGGAAGAAGGCCAAGCTGGC+TGG + chr8_2:12754762-12754781 Msa1234960:CDS 60.0%
CCACTTCGGCTCCTACTGAC+CGG + chr8_2:12755121-12755140 Msa1234960:CDS 60.0%
GGGAGTTTGAAGGGGAGGGG+AGG + chr8_2:12751204-12751223 Msa1234960:intron 65.0%
TTTGAAGGGGAGGGGAGGGG+AGG + chr8_2:12751209-12751228 Msa1234960:intron 65.0%
AGGCAGCCCAAACAGGCCCT+AGG - chr8_2:12751573-12751592 None:intergenic 65.0%
!! CACCACTTGGGTTGGCCTGG+TGG + chr8_2:12753315-12753334 Msa1234960:intron 65.0%
CACCACCAGGCCAACCCAAG+TGG - chr8_2:12753320-12753339 None:intergenic 65.0%
GGTCCCAAGCCAACACCACC+AGG - chr8_2:12753333-12753352 None:intergenic 65.0%
CCGGTCAGTAGGAGCCGAAG+TGG - chr8_2:12755124-12755143 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 12750898 12755623 12750898 ID=Msa1234960;Name=Msa1234960
chr8_2 mRNA 12750898 12755623 12750898 ID=Msa1234960-mRNA-1;Parent=Msa1234960;Name=Msa1234960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.90|1|1|1|11|296|445
chr8_2 exon 12750898 12751020 12750898 ID=Msa1234960-mRNA-1:exon:4940;Parent=Msa1234960-mRNA-1
chr8_2 exon 12752087 12752266 12752087 ID=Msa1234960-mRNA-1:exon:4941;Parent=Msa1234960-mRNA-1
chr8_2 exon 12752600 12752718 12752600 ID=Msa1234960-mRNA-1:exon:4942;Parent=Msa1234960-mRNA-1
chr8_2 exon 12752806 12752854 12752806 ID=Msa1234960-mRNA-1:exon:4943;Parent=Msa1234960-mRNA-1
chr8_2 exon 12752947 12753048 12752947 ID=Msa1234960-mRNA-1:exon:4944;Parent=Msa1234960-mRNA-1
chr8_2 exon 12753524 12753626 12753524 ID=Msa1234960-mRNA-1:exon:4945;Parent=Msa1234960-mRNA-1
chr8_2 exon 12753726 12753789 12753726 ID=Msa1234960-mRNA-1:exon:4946;Parent=Msa1234960-mRNA-1
chr8_2 exon 12754117 12754231 12754117 ID=Msa1234960-mRNA-1:exon:4947;Parent=Msa1234960-mRNA-1
chr8_2 exon 12754384 12754484 12754384 ID=Msa1234960-mRNA-1:exon:4948;Parent=Msa1234960-mRNA-1
chr8_2 exon 12754670 12754826 12754670 ID=Msa1234960-mRNA-1:exon:4949;Parent=Msa1234960-mRNA-1
chr8_2 exon 12755103 12755623 12755103 ID=Msa1234960-mRNA-1:exon:4950;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12750898 12751020 12750898 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12752087 12752266 12752087 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12752600 12752718 12752600 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12752806 12752854 12752806 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12752947 12753048 12752947 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12753524 12753626 12753524 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12753726 12753789 12753726 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12754117 12754231 12754117 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12754384 12754484 12754384 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12754670 12754826 12754670 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 CDS 12755103 12755327 12755103 ID=Msa1234960-mRNA-1:cds;Parent=Msa1234960-mRNA-1
chr8_2 three_prime_UTR 12755328 12755623 12755328 ID=Msa1234960-mRNA-1:three_prime_utr;Parent=Msa1234960-mRNA-1
Gene Sequence

>Msa1234960

GGGCCCGGCGTTGGTGGAGATTATGGTCCATATAGACAATCCGAGAGGAATTCTATGTACAAACAATATGCTGAGAAACTACTTCAATCCGGTCAAGTTTATCGCTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGTGAATGCTAAACTAAAAAATTTACCTCCAGTATACACAGGTAAATGGGCCAATGCAACAGATGCGGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCTTATACATTCCGGTTTCGTGTCCCCAAAGGAAGTTTAAAAATTACTGACTTAATACGAGGCGAGGTTAGTTGGAATTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAGCCAGTTTATAACTTTTGTGTGACGGTTGATGATGCTACCATGGCTATTTCTCATGTCATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAAGCATTAATATATAAGGCACTAGAATTTCCCATGCCTCATTTTGCACACGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAGCGACATGGAGCAACATCAGTTGGTCAGTACAGGGAAATGGGATACCTACCTGAGGCAATGAATAACTACCTAGCATTATTAGGCTGGGGCGATGGGACCGATAATGAGTTCTTCACCCTTGATAAACTTGTTGAAAGATTCACTATTGAACGTGTGAACAAAAGTGGTGCTGTTTTTGATTCCACAAAGTTAAGGTGGATGAATGGTCAACATTTAAGAGCACGTCCATCAGAGGAGATGACCAAACTTATCGGAGAGCGTTGGAAGACATCTGGCTTCCTCACAATATCAGAAGGGCCCTTTGTTGATGAATTAATAAACCTACTTAAGGATGGGATTGACTTGATAACTGATGCAGACAAAGTACTTTCTAACTTGCTTTCTTATCCTCTACATTCTACTTTACAAAGCGAAGAAGCAGAATCTGCCATACAAGATAATCTTCCTGAGTTTTGTGCCAGCTTCTTGGCTGCATATGATAGCGGTGATCTTGTAGGTGCACTGGAAGAAGGCCAAGCTGGCTGGAAAAATTGGGTCAAAGGCTTCGGCAAATCAACTAAGCGCAAGGGAAAATCACTCTTCATGCCACTTCGGCTCCTACTGACCGGAAAACTCCATGGACCAGATATTGGGGCTGCTGTTGTCTTGCTTTATCAAGCTGGGACTACTGGTGTCATAGCTCCTGAAGTTAGCTTTGTGACAATTGATGAAAGAGTTAAAATGCTTAGAGAAATTAATTGGGAAACACTGTCCAAAGATCATGTTGTGAAGGAGACTGCTTCTACTGTCTAA

Protein sequence

>Msa1234960

GPGVGGDYGPYRQSERNSMYKQYAEKLLQSGQVYRCFCSNEELEKMKVNAKLKNLPPVYTGKWANATDAEVEEELAKGTPYTFRFRVPKGSLKITDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPHFAHVSLILAPDRSKLSKRHGATSVGQYREMGYLPEAMNNYLALLGWGDGTDNEFFTLDKLVERFTIERVNKSGAVFDSTKLRWMNGQHLRARPSEEMTKLIGERWKTSGFLTISEGPFVDELINLLKDGIDLITDADKVLSNLLSYPLHSTLQSEEAESAIQDNLPEFCASFLAAYDSGDLVGALEEGQAGWKNWVKGFGKSTKRKGKSLFMPLRLLLTGKLHGPDIGAAVVLLYQAGTTGVIAPEVSFVTIDERVKMLREINWETLSKDHVVKETASTV*