AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1020560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1020560 MtrunA17_Chr7g0220381 98.653 668 8 1 1 667 1 668 0.0 1363
Msa1020560 MtrunA17_Chr1g0146501 45.672 670 330 10 9 661 5 657 0.0 548
Msa1020560 MtrunA17_Chr3g0127811 46.214 515 231 6 9 521 5 475 7.70e-141 419
Msa1020560 MtrunA17_Chr3g0143821 33.642 324 192 8 71 390 83 387 4.84e-47 175
Msa1020560 MtrunA17_Chr5g0399311 32.653 392 219 16 6 385 38 396 1.53e-45 169
Msa1020560 MtrunA17_Chr1g0204121 32.298 322 200 8 71 390 62 367 2.05e-45 169
Msa1020560 MtrunA17_Chr1g0204121 35.537 121 65 5 461 580 366 474 4.31e-11 65.9
Msa1020560 MtrunA17_Chr1g0204141 31.790 324 202 8 71 390 62 370 4.09e-45 168
Msa1020560 MtrunA17_Chr1g0204141 37.190 121 63 5 461 580 369 477 2.38e-11 66.6
Msa1020560 MtrunA17_Chr4g0056061 31.720 372 226 10 20 385 31 380 6.09e-45 168
Msa1020560 MtrunA17_Chr5g0448581 30.562 409 239 12 5 390 8 394 1.39e-42 162
Msa1020560 MtrunA17_Chr5g0436321 32.119 302 187 7 90 390 153 437 1.74e-42 162
Msa1020560 MtrunA17_Chr3g0129981 29.319 382 237 10 14 390 37 390 3.87e-42 160
Msa1020560 MtrunA17_Chr6g0455571 32.237 304 176 8 97 391 114 396 3.43e-40 154
Msa1020560 MtrunA17_Chr5g0417871 31.023 303 190 6 87 386 74 360 6.13e-40 153
Msa1020560 MtrunA17_Chr4g0042711 32.558 301 174 8 92 384 91 370 3.68e-39 151
Msa1020560 MtrunA17_Chr4g0061781 32.215 298 182 7 97 390 115 396 4.70e-39 151
Msa1020560 MtrunA17_Chr5g0426591 28.824 340 216 9 61 390 67 390 1.12e-38 150
Msa1020560 MtrunA17_Chr2g0307971 31.132 318 187 8 83 390 100 395 1.79e-38 149
Msa1020560 MtrunA17_Chr4g0008451 31.068 309 190 9 85 390 220 508 6.78e-38 149
Msa1020560 MtrunA17_Chr3g0132371 27.119 413 258 14 2 390 24 417 1.45e-37 147
Msa1020560 MtrunA17_Chr3g0123521 29.260 311 188 8 96 390 148 442 8.60e-36 142
Msa1020560 MtrunA17_Chr4g0070551 31.650 297 183 8 96 390 226 504 1.94e-35 142
Msa1020560 MtrunA17_Chr1g0160781 28.339 307 192 9 97 390 148 439 7.42e-33 133
Msa1020560 MtrunA17_Chr5g0424241 28.962 366 225 13 55 400 107 457 8.91e-33 134
Msa1020560 MtrunA17_Chr3g0077321 31.013 316 192 9 97 400 146 447 9.61e-33 133
Msa1020560 MtrunA17_Chr4g0075311 28.986 345 196 8 83 390 151 483 3.40e-32 132
Msa1020560 MtrunA17_Chr4g0043911 27.632 304 198 8 97 390 149 440 3.74e-31 128
Msa1020560 MtrunA17_Chr5g0412251 28.107 338 203 6 89 396 77 404 3.97e-30 124
Msa1020560 MtrunA17_Chr3g0087291 30.584 291 185 7 101 390 176 450 4.33e-30 125
Msa1020560 MtrunA17_Chr4g0010511 29.897 291 187 7 101 390 236 510 2.10e-29 124
Msa1020560 MtrunA17_Chr3g0132951 28.571 336 198 7 92 396 94 418 3.29e-29 122
Msa1020560 MtrunA17_Chr2g0284071 25.490 357 221 7 70 390 185 532 1.55e-27 118
Msa1020560 MtrunA17_Chr4g0003561 23.762 303 202 7 97 395 74 351 1.90e-15 79.3
Msa1020560 MtrunA17_Chr2g0298881 23.208 293 173 8 97 382 34 281 8.85e-14 73.6
Msa1020560 MtrunA17_Chr7g0240241 31.092 119 74 2 272 386 7 121 1.14e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1020560 AT3G30300.2 66.861 685 201 6 1 667 1 677 0.0 907
Msa1020560 AT3G30300.1 66.861 685 201 6 1 667 1 677 0.0 907
Msa1020560 AT3G03810.2 48.426 667 324 9 7 666 3 656 0.0 587
Msa1020560 AT3G03810.1 48.426 667 324 9 7 666 3 656 0.0 587
Msa1020560 AT4G38390.1 34.421 337 192 10 62 390 85 400 9.93e-49 179
Msa1020560 AT1G04910.1 31.988 322 201 8 71 390 62 367 4.98e-45 169
Msa1020560 AT1G20550.1 33.846 325 174 11 79 390 88 384 3.59e-44 167
Msa1020560 AT1G11990.1 30.882 340 214 8 60 390 153 480 8.89e-44 166
Msa1020560 AT4G16650.2 34.202 307 172 10 88 386 111 395 2.80e-43 164
Msa1020560 AT4G16650.1 34.202 307 172 10 88 386 111 395 2.80e-43 164
Msa1020560 AT1G76270.1 34.343 297 174 8 96 390 104 381 3.09e-43 164
Msa1020560 AT5G64600.1 29.750 400 241 10 12 396 25 399 9.15e-43 162
Msa1020560 AT1G22460.1 32.051 312 187 11 83 390 146 436 1.06e-40 157
Msa1020560 AT3G02250.1 28.535 389 236 13 1 384 29 380 8.83e-39 150
Msa1020560 AT2G03280.1 33.221 298 176 7 98 390 88 367 1.85e-38 149
Msa1020560 AT3G54100.1 28.614 339 203 9 55 390 196 498 2.43e-38 151
Msa1020560 AT5G15740.1 33.106 293 172 9 98 384 106 380 5.24e-38 148
Msa1020560 AT1G14020.1 32.550 298 178 7 98 390 91 370 8.42e-38 147
Msa1020560 AT2G37980.1 29.080 337 204 9 55 390 200 502 1.89e-37 148
Msa1020560 AT5G35570.1 28.977 352 205 10 44 390 216 527 6.73e-37 147
Msa1020560 AT5G01100.1 29.934 304 189 8 94 393 212 495 7.48e-37 147
Msa1020560 AT3G26370.1 28.754 313 191 8 94 390 154 450 9.32e-37 145
Msa1020560 AT1G11990.2 27.807 374 210 9 64 390 142 502 1.26e-36 145
Msa1020560 AT2G03280.2 31.153 321 179 7 98 390 88 394 1.75e-36 144
Msa1020560 AT1G38065.2 29.773 309 193 9 98 395 26 321 1.15e-33 135
Msa1020560 AT1G35510.1 29.467 319 197 9 95 400 156 459 1.15e-33 136
Msa1020560 AT1G38065.1 29.773 309 193 9 98 395 36 331 1.34e-33 135
Msa1020560 AT1G62330.1 26.879 346 203 8 83 390 208 541 1.57e-33 137
Msa1020560 AT1G38131.1 27.525 396 246 11 11 395 85 450 2.01e-33 136
Msa1020560 AT4G24530.1 28.916 332 192 9 97 396 100 419 3.66e-32 131
Msa1020560 AT5G63390.1 31.271 291 186 7 101 391 167 443 5.15e-32 131
Msa1020560 AT5G65470.1 28.529 340 201 7 89 396 76 405 5.47e-32 130
Msa1020560 AT2G01480.1 27.541 305 197 8 97 390 153 444 7.98e-32 131
Msa1020560 AT2G01480.2 27.541 305 197 8 97 390 153 444 1.09e-31 130
Msa1020560 AT3G07900.1 31.959 291 182 8 101 390 191 466 3.60e-31 129
Msa1020560 AT1G14970.3 29.000 300 189 8 98 386 9 295 8.13e-31 125
Msa1020560 AT1G14970.2 29.000 300 189 8 98 386 35 321 1.08e-30 125
Msa1020560 AT1G14970.1 29.000 300 189 8 98 386 155 441 5.22e-30 125
Msa1020560 AT1G29200.4 28.793 323 193 6 98 390 70 385 4.66e-29 122
Msa1020560 AT1G29200.1 28.793 323 193 6 98 390 70 385 4.66e-29 122
Msa1020560 AT2G44500.1 30.000 290 189 6 101 390 180 455 7.83e-29 122
Msa1020560 AT1G29200.2 28.793 323 193 6 98 390 186 501 1.11e-28 122
Msa1020560 AT1G29200.3 27.987 318 192 6 103 390 1 311 6.85e-26 111
Msa1020560 AT3G26370.2 27.586 203 120 6 94 281 154 344 2.06e-20 94.4
Msa1020560 AT2G44500.2 28.033 239 158 6 101 339 180 404 1.86e-18 89.0
Msa1020560 AT1G52630.1 23.684 304 203 9 96 396 72 349 3.79e-16 82.0
Msa1020560 AT1G52630.2 22.997 287 192 9 113 396 1 261 2.69e-11 66.2

Find 191 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTTGTTGATTGGATTTC+AGG 0.114456 7_1:-44211830 None:intergenic
CTTGCACCCTTTAGATATTT+TGG 0.122402 7_1:-44212341 None:intergenic
TAGCACGTAACTTATATTTA+AGG 0.138942 7_1:-44214774 None:intergenic
AAGGAACATGGTTTAAATTA+TGG 0.191022 7_1:+44214590 Msa1020560:three_prime_UTR
TCCGGATTCATGTACATAAT+TGG 0.204098 7_1:+44214495 Msa1020560:three_prime_UTR
CTCACCTCCTCAGGCATTAA+AGG 0.230626 7_1:-44213192 None:intergenic
TGCATACCGGATTTAGTTTC+AGG 0.232359 7_1:+44214535 Msa1020560:three_prime_UTR
CCTTGCTGCTGGTTGTTGAT+TGG 0.234456 7_1:-44211838 None:intergenic
TACCCTCTTGGATTTGAATC+TGG 0.261112 7_1:-44210184 None:intergenic
TGATTCTTCTAGTTAATATT+AGG 0.270925 7_1:+44214835 Msa1020560:three_prime_UTR
CCCTCTATGTTATACGATTT+CGG 0.281045 7_1:-44213616 None:intergenic
TTATCTTTCGATTGAGAAAC+TGG 0.284446 7_1:-44214266 None:intergenic
CTCTCTCTCTATTGTCTTTG+TGG 0.292490 7_1:+44209284 Msa1020560:five_prime_UTR
ATCGTTTAAAGTGCCGTATT+CGG 0.301269 7_1:+44212382 Msa1020560:CDS
TATTGATAACATATCAGTTT+TGG 0.302331 7_1:+44214800 Msa1020560:three_prime_UTR
CAACCAGCAGCAAGGGAATA+AGG 0.304830 7_1:+44211846 Msa1020560:CDS
ATCAAATGGGTTGGTTTAGT+TGG 0.307448 7_1:+44209516 Msa1020560:CDS
CATACATTAGTAGGAAAATC+TGG 0.311648 7_1:-44209660 None:intergenic
ATCAGGTTCATTATCACTTT+CGG 0.311781 7_1:-44213656 None:intergenic
ACATAGAGGGTTGGTGGGGC+TGG 0.313553 7_1:+44213629 Msa1020560:CDS
TCTTCCATTCCTTTATCTCT+TGG 0.320545 7_1:+44214206 Msa1020560:CDS
ACATGATGCAAGTAATAAAA+AGG 0.324021 7_1:-44212410 None:intergenic
TTCCAACGGCGGATGCTTGC+AGG 0.331819 7_1:+44212475 Msa1020560:CDS
TTGCTAATGAGAATATAAAT+TGG 0.351225 7_1:-44212292 None:intergenic
AGTTCCATTACTGTGCTATC+AGG 0.353214 7_1:-44213673 None:intergenic
CCATTCATTGCGTTTGATCC+TGG 0.356161 7_1:+44212919 Msa1020560:CDS
TCAAATGGGTTGGTTTAGTT+GGG 0.358629 7_1:+44209517 Msa1020560:CDS
TTAAACCATGTTCCTTAGTA+AGG 0.360046 7_1:-44214583 None:intergenic
AGTAGTTTACATACATTAGT+AGG 0.366322 7_1:-44209669 None:intergenic
TGCCGCAAACATGAACATTC+AGG 0.368589 7_1:-44214161 None:intergenic
GATGACGATGATTCTGTATC+TGG 0.377269 7_1:+44214308 Msa1020560:CDS
GTTCATCTAACAATCGATAA+TGG 0.382324 7_1:+44214462 Msa1020560:three_prime_UTR
GTGGTTCATATAGAAGATTA+TGG 0.382745 7_1:+44210131 Msa1020560:CDS
CTTCAATTACTATCTTCTCT+TGG 0.386762 7_1:+44209619 Msa1020560:CDS
TCCCTGAATGTTCATGTTTG+CGG 0.387148 7_1:+44214159 Msa1020560:CDS
TAAATTGGTCCTCATTATAT+AGG 0.387192 7_1:-44212277 None:intergenic
ATAGAGTTTATTTACCTGTC+AGG 0.396931 7_1:-44213865 None:intergenic
CACGTGTTAAAGCATGTCTT+TGG 0.397639 7_1:-44209334 None:intergenic
TGGGAGATGATTAAGATCTA+TGG 0.399799 7_1:+44213472 Msa1020560:CDS
GATGCAATTATATATGTATC+TGG 0.399917 7_1:+44213361 Msa1020560:CDS
TTCCTCGAAAGGTGGTGGTC+CGG 0.409248 7_1:-44213524 None:intergenic
AAAATCTGGTTTATCAAAGA+TGG 0.413402 7_1:-44209646 None:intergenic
ACTGAATGCTTCTTTAATAC+AGG 0.417130 7_1:-44212437 None:intergenic
GAAGCCGATGTGTTCATTCC+TGG 0.419301 7_1:+44213751 Msa1020560:CDS
TCCCGGACCACCACCTTTCG+AGG 0.420937 7_1:+44213522 Msa1020560:CDS
GATAATGGATTCACATTCTC+CGG 0.427881 7_1:+44214477 Msa1020560:three_prime_UTR
AACTCTTCCAAAATATCTAA+AGG 0.434334 7_1:+44212334 Msa1020560:CDS
TTCGGTCTCGCTGGAGGAGG+AGG 0.434882 7_1:-44213598 None:intergenic
GTATCTGGAGGAGAAGTCTT+TGG 0.438049 7_1:+44213376 Msa1020560:CDS
CATAGAGGGTTGGTGGGGCT+GGG 0.440865 7_1:+44213630 Msa1020560:CDS
AAAGGTGGTGGTCCGGGAGG+AGG 0.441362 7_1:-44213517 None:intergenic
ACCAATTATGTACATGAATC+CGG 0.441886 7_1:-44214496 None:intergenic
TCCTCGAAAGGTGGTGGTCC+GGG 0.443530 7_1:-44213523 None:intergenic
ACCCTCTTGGATTTGAATCT+GGG 0.447348 7_1:-44210183 None:intergenic
CTCGCTGGAGGAGGAGGAAG+TGG 0.450959 7_1:-44213592 None:intergenic
GGATGAGAGAGAAAGGATAA+TGG 0.452745 7_1:-44214134 None:intergenic
ACTCTTCCAAAATATCTAAA+GGG 0.457148 7_1:+44212335 Msa1020560:CDS
AACTTCTCTTAGTACACCTT+GGG 0.457194 7_1:+44213453 Msa1020560:CDS
GAACCTTATTCCCTTGCTGC+TGG 0.463356 7_1:-44211849 None:intergenic
GGTATACTTCTGCGTGCCTA+TGG 0.465760 7_1:+44213328 Msa1020560:CDS
GAATGAAAAGAATTAAGAAA+TGG 0.468196 7_1:+44214956 Msa1020560:three_prime_UTR
CATGAAAACCACCTTGTATC+CGG 0.471100 7_1:-44211654 None:intergenic
TGCTTCCAACCGCTGCATAC+CGG 0.473577 7_1:+44214522 Msa1020560:three_prime_UTR
CATCCAAGGTAATGTGTTGA+TGG 0.473684 7_1:+44214440 Msa1020560:three_prime_UTR
TCAGCTGAAGCAAGACTGAA+TGG 0.473934 7_1:+44213162 Msa1020560:CDS
ACATATTCTCTCACCTCCTC+AGG 0.474495 7_1:-44213201 None:intergenic
AATCCATTTGATTGTGAACC+AGG 0.476316 7_1:-44211622 None:intergenic
TGGTTCATATAGAAGATTAT+GGG 0.479376 7_1:+44210132 Msa1020560:CDS
TCTTCACCTGAAACTAAATC+CGG 0.481471 7_1:-44214541 None:intergenic
ATTTAGTTTCAGGTGAAGAA+AGG 0.482381 7_1:+44214545 Msa1020560:three_prime_UTR
CCTTTGATATTCTTCGAAAG+AGG 0.485146 7_1:-44212699 None:intergenic
TTTGTTACTACAACAATGAA+AGG 0.486229 7_1:+44209471 Msa1020560:exon
TTGTTACTACAACAATGAAA+GGG 0.490909 7_1:+44209472 Msa1020560:exon
GATCCTGGTTCACAATCAAA+TGG 0.491098 7_1:+44211619 Msa1020560:intron
TAATTCAACATAAAAGATCA+TGG 0.498852 7_1:+44213097 Msa1020560:CDS
TTATACGATTTCGGTCTCGC+TGG 0.501082 7_1:-44213607 None:intergenic
TGGATTTGACCGTGATGGGA+AGG 0.501130 7_1:+44213771 Msa1020560:CDS
TTAACTTCCTCGAAAGGTGG+TGG 0.501803 7_1:-44213529 None:intergenic
TTCCCATCACGGTCAAATCC+AGG 0.502266 7_1:-44213769 None:intergenic
GAATTGCGGGCGCAATGTAA+AGG 0.505280 7_1:-44214709 None:intergenic
TATTAGGCTTAAGTTCACTT+TGG 0.505889 7_1:+44214851 Msa1020560:three_prime_UTR
TAACCTGGATAATACCCTCT+TGG 0.506196 7_1:-44210196 None:intergenic
ATAAAACGTGGGATTGTCAA+AGG 0.507707 7_1:+44213123 Msa1020560:CDS
CCAGGATCAAACGCAATGAA+TGG 0.508815 7_1:-44212919 None:intergenic
TTCCTGGATTTGACCGTGAT+GGG 0.512010 7_1:+44213767 Msa1020560:CDS
AATCCAAGAGGGTATTATCC+AGG 0.512350 7_1:+44210193 Msa1020560:CDS
AAGAGGGAAGAGAGAGAAAG+AGG 0.514342 7_1:+44209420 Msa1020560:five_prime_UTR
CTTTGATATTCTTCGAAAGA+GGG 0.516119 7_1:-44212698 None:intergenic
GATAAGGAAAATGAAGATGA+TGG 0.518136 7_1:+44214284 Msa1020560:CDS
CTCCTCAGGCATTAAAGGAC+AGG 0.524106 7_1:-44213187 None:intergenic
CGTATAACATAGAGGGTTGG+TGG 0.525137 7_1:+44213623 Msa1020560:CDS
AACCATGTTCCTTAGTAAGG+TGG 0.525806 7_1:-44214580 None:intergenic
AAAGCCTATCCACCTTACTA+AGG 0.527030 7_1:+44214571 Msa1020560:three_prime_UTR
TCATGCTCTTCAGTTCCGAC+AGG 0.528214 7_1:+44212742 Msa1020560:CDS
TACGATTTCGGTCTCGCTGG+AGG 0.529403 7_1:-44213604 None:intergenic
TAAAGAAGAAAATCAATTCG+AGG 0.529545 7_1:+44214385 Msa1020560:CDS
GGAGGAAGTGGACGAGGACG+TGG 0.530339 7_1:-44213580 None:intergenic
TGCGTAACACCAAGAGATAA+AGG 0.532186 7_1:-44214215 None:intergenic
TTAAATTATGGTTGCAGCTG+TGG 0.532542 7_1:+44214602 Msa1020560:three_prime_UTR
ATTCCTGGATTTGACCGTGA+TGG 0.532702 7_1:+44213766 Msa1020560:CDS
CAAAATATCTAAAGGGTGCA+AGG 0.534551 7_1:+44212342 Msa1020560:CDS
CAAAGTGGTGGAAATAATGA+AGG 0.534754 7_1:+44214344 Msa1020560:CDS
AGGGACTGGATGAGAGAGAA+AGG 0.536824 7_1:-44214141 None:intergenic
GGTTTATTCTTTAAACAAAG+TGG 0.537933 7_1:+44214329 Msa1020560:CDS
GGGACACAGGTTATACCAAT+CGG 0.538624 7_1:+44213822 Msa1020560:CDS
GATTTGACCGTGATGGGAAG+GGG 0.539167 7_1:+44213773 Msa1020560:CDS
GAACTTCTCTTAGTACACCT+TGG 0.539722 7_1:+44213452 Msa1020560:CDS
CAATCAACAACCAGCAGCAA+GGG 0.544284 7_1:+44211839 Msa1020560:CDS
AAAGACTCTCTAGTCATGCC+AGG 0.545147 7_1:-44212937 None:intergenic
GATTTCGGTCTCGCTGGAGG+AGG 0.545526 7_1:-44213601 None:intergenic
GCCGCAAACATGAACATTCA+GGG 0.546594 7_1:-44214160 None:intergenic
TAAATCCGGTATGCAGCGGT+TGG 0.547898 7_1:-44214527 None:intergenic
GGATTTGACCGTGATGGGAA+GGG 0.548738 7_1:+44213772 Msa1020560:CDS
TGCGGTCGAAATTGTGGTTG+CGG 0.553279 7_1:+44214663 Msa1020560:three_prime_UTR
ATATAGAAGATTATGGGGAC+AGG 0.553298 7_1:+44210138 Msa1020560:CDS
TGTTCCTTAGTAAGGTGGAT+AGG 0.554048 7_1:-44214575 None:intergenic
CTAGCTTGGTGATGGGACAC+AGG 0.554489 7_1:+44213809 Msa1020560:CDS
AAATCTGGTTTATCAAAGAT+GGG 0.555271 7_1:-44209645 None:intergenic
CTCGCGGCTTGGAAGAATGC+AGG 0.555324 7_1:+44213556 Msa1020560:CDS
GCACCAGTGTCCTGCATGGA+TGG 0.561700 7_1:+44214235 Msa1020560:CDS
CTCAGTTACACTTCTCAAGA+GGG 0.563980 7_1:+44209404 Msa1020560:five_prime_UTR
ACTCAGTTACACTTCTCAAG+AGG 0.564084 7_1:+44209403 Msa1020560:five_prime_UTR
TTATTCTTTAAACAAAGTGG+TGG 0.564908 7_1:+44214332 Msa1020560:CDS
TAAAACGTGGGATTGTCAAA+GGG 0.565236 7_1:+44213124 Msa1020560:CDS
AGAGGGAAGAGAGAGAAAGA+GGG 0.565386 7_1:+44209421 Msa1020560:five_prime_UTR
TGAACCTGATAGCACAGTAA+TGG 0.565750 7_1:+44213669 Msa1020560:CDS
TACCTGCAAGCATCCGCCGT+TGG 0.566021 7_1:-44212477 None:intergenic
AGTTTCTCAATCGAAAGATA+AGG 0.570878 7_1:+44214268 Msa1020560:CDS
GGAGGAGGAGGAAGTGGACG+AGG 0.570933 7_1:-44213586 None:intergenic
CGTGGCTAAAATCAGTTCGC+AGG 0.573450 7_1:+44214057 Msa1020560:CDS
GTATAACATAGAGGGTTGGT+GGG 0.579086 7_1:+44213624 Msa1020560:CDS
TGTTACTACAACAATGAAAG+GGG 0.579318 7_1:+44209473 Msa1020560:exon
GAACCATCAACACATTACCT+TGG 0.581809 7_1:-44214443 None:intergenic
ACCGAAATCGTATAACATAG+AGG 0.582787 7_1:+44213615 Msa1020560:CDS
TGCTCATAAGTTACTGTGGG+AGG 0.583207 7_1:+44213705 Msa1020560:CDS
AACCTAGTTAATCCTCCTCC+CGG 0.583459 7_1:+44213505 Msa1020560:CDS
GTGGGAGGCTATTGATTATG+CGG 0.583519 7_1:+44213720 Msa1020560:CDS
TCGAATGCCCCTTCCCATCA+CGG 0.583522 7_1:-44213780 None:intergenic
CCAATCAACAACCAGCAGCA+AGG 0.583623 7_1:+44211838 Msa1020560:CDS
AAAGGGTGCAAGGAGAAAGA+AGG 0.584942 7_1:+44212352 Msa1020560:CDS
CAAAGACATTTAGACCTGAC+AGG 0.587301 7_1:+44213851 Msa1020560:CDS
AAACATGAACATTCAGGGAC+TGG 0.587652 7_1:-44214155 None:intergenic
GGACTAGTGACCATCCATGC+AGG 0.597131 7_1:-44214245 None:intergenic
GTCGAACTAGTTGTTTCCAA+CGG 0.598149 7_1:+44212461 Msa1020560:CDS
CAAATGCTCATAAGTTACTG+TGG 0.600315 7_1:+44213701 Msa1020560:CDS
ATGTCTTTGACGCAGCCGAT+TGG 0.601771 7_1:-44213837 None:intergenic
GTGGCATGCGGTCGAAATTG+TGG 0.603083 7_1:+44214657 Msa1020560:three_prime_UTR
TGACCATCCATGCAGGACAC+TGG 0.606588 7_1:-44214238 None:intergenic
CCTCTTTCGAAGAATATCAA+AGG 0.608451 7_1:+44212699 Msa1020560:CDS
GTCCGGGAGGAGGATTAACT+AGG 0.610677 7_1:-44213507 None:intergenic
TCTGGAGGAGAAGTCTTTGG+TGG 0.611496 7_1:+44213379 Msa1020560:CDS
CTGTCCTTTAATGCCTGAGG+AGG 0.612788 7_1:+44213188 Msa1020560:CDS
TCGAAAGGTGGTGGTCCGGG+AGG 0.613834 7_1:-44213520 None:intergenic
CCGAAATCGTATAACATAGA+GGG 0.618996 7_1:+44213616 Msa1020560:CDS
CGAGGATCAAGAAGAGCTCG+AGG 0.619548 7_1:+44214403 Msa1020560:CDS
AGAATTAAGAAATGGCAATG+TGG 0.621753 7_1:+44214964 Msa1020560:three_prime_UTR
GATTAAGATCTATGGACAAG+AGG 0.623053 7_1:+44213480 Msa1020560:CDS
AAATGCTCATAAGTTACTGT+GGG 0.623707 7_1:+44213702 Msa1020560:CDS
ATCCTGTCCTTTAATGCCTG+AGG 0.629748 7_1:+44213185 Msa1020560:CDS
TGATATTCTTCGAAAGAGGG+AGG 0.632750 7_1:-44212695 None:intergenic
TTACGCACCAGTGTCCTGCA+TGG 0.633222 7_1:+44214231 Msa1020560:CDS
AACACCAAGAGATAAAGGAA+TGG 0.633396 7_1:-44214210 None:intergenic
TGCATCCTTCGAATATCCAT+AGG 0.638105 7_1:-44213344 None:intergenic
TAGATCTTAATCATCTCCCA+AGG 0.641589 7_1:-44213469 None:intergenic
GCGTGCCTATGGATATTCGA+AGG 0.643407 7_1:+44213339 Msa1020560:CDS
GGAAAAGTTCAGCACAGCCG+TGG 0.645583 7_1:-44212966 None:intergenic
GAATACGGCACTTTAAACGA+TGG 0.650417 7_1:-44212380 None:intergenic
GGTTCATATAGAAGATTATG+GGG 0.652052 7_1:+44210133 Msa1020560:CDS
ATCCACCTTACTAAGGAACA+TGG 0.652290 7_1:+44214578 Msa1020560:three_prime_UTR
AAACTAAATCCGGTATGCAG+CGG 0.652936 7_1:-44214531 None:intergenic
AACGCAATGAATGGACGACT+AGG 0.653361 7_1:-44212910 None:intergenic
GATCAAGAAGAGCTCGAGGG+TGG 0.655181 7_1:+44214407 Msa1020560:CDS
TACGATTAGCTTGAAACATG+TGG 0.655487 7_1:-44214034 None:intergenic
AATCGTATAACATAGAGGGT+TGG 0.655865 7_1:+44213620 Msa1020560:CDS
TTAACTAGAAGAATCATGCA+AGG 0.657127 7_1:-44214828 None:intergenic
AGAGAGTCTTTAGCTTACCA+CGG 0.660062 7_1:+44212949 Msa1020560:CDS
TATAACATAGAGGGTTGGTG+GGG 0.660372 7_1:+44213625 Msa1020560:CDS
ACCCAGATTCAAATCCAAGA+GGG 0.661276 7_1:+44210182 Msa1020560:CDS
TGTATTAAAGAAGCATTCAG+TGG 0.663230 7_1:+44212439 Msa1020560:CDS
AGATCATGGATGATAAAACG+TGG 0.663806 7_1:+44213111 Msa1020560:CDS
GATCATGGATGATAAAACGT+GGG 0.665807 7_1:+44213112 Msa1020560:CDS
GCAATTATATATGTATCTGG+AGG 0.667193 7_1:+44213364 Msa1020560:CDS
AAAGTTCGTGAACTTCCTGT+CGG 0.667614 7_1:-44212757 None:intergenic
TACCCAGATTCAAATCCAAG+AGG 0.669740 7_1:+44210181 Msa1020560:CDS
GTGGCGACAGATGACATCCA+AGG 0.676484 7_1:+44214426 Msa1020560:exon
TGTTTCAAGCTAATCGTACG+TGG 0.686857 7_1:+44214039 Msa1020560:CDS
GAACTAGTTGTTTCCAACGG+CGG 0.690031 7_1:+44212464 Msa1020560:CDS
ATGCGGCAAAATGTGGCATG+CGG 0.694884 7_1:+44214645 Msa1020560:three_prime_UTR
GAGGATCAAGAAGAGCTCGA+GGG 0.698107 7_1:+44214404 Msa1020560:CDS
ATAGCACAGTAATGGAACTG+AGG 0.703450 7_1:+44213677 Msa1020560:CDS
AAATCCAGGAATGAACACAT+CGG 0.724691 7_1:-44213755 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATATGAAATTAATGA+TGG + chr7_1:44210608-44210627 Msa1020560:intron 10.0%
!!! TTTTATATGAAATTAATGAT+GGG + chr7_1:44210609-44210628 Msa1020560:intron 10.0%
!!! AACAGTTTTTAAATTAAAAT+GGG + chr7_1:44211165-44211184 Msa1020560:intron 10.0%
!!! AAAAAAAAAAATGATTTTGA+CGG + chr7_1:44213268-44213287 Msa1020560:intron 10.0%
!!! AATTTAATCTTTGAAATTGA+GGG + chr7_1:44210702-44210721 Msa1020560:intron 15.0%
!!! TTTAATTTCAATGATCAAAT+TGG - chr7_1:44210733-44210752 None:intergenic 15.0%
!!! CAACAGTTTTTAAATTAAAA+TGG + chr7_1:44211164-44211183 Msa1020560:intron 15.0%
!!! TTTTTAAATTAAAATGGGAA+AGG + chr7_1:44211170-44211189 Msa1020560:intron 15.0%
!!! TTTTAAATTAAAATGGGAAA+GGG + chr7_1:44211171-44211190 Msa1020560:intron 15.0%
!! ATTAAATTGTTTATCCAAAA+AGG - chr7_1:44211917-44211936 None:intergenic 15.0%
!! TATAACTAAAGATAAAACAA+AGG + chr7_1:44211992-44212011 Msa1020560:intron 15.0%
!! TTAATAGGTACATATAATAA+AGG - chr7_1:44212624-44212643 None:intergenic 15.0%
!! AAAAAGAAACAACAATTAAT+AGG - chr7_1:44212639-44212658 None:intergenic 15.0%
!!! AATTTTCATGACATAATTAT+AGG + chr7_1:44212878-44212897 Msa1020560:intron 15.0%
!!! TTTTCATTCAATATATGAAA+AGG - chr7_1:44214945-44214964 None:intergenic 15.0%
!! AAATGAAGTCAAAAATCAAA+TGG + chr7_1:44209502-44209521 Msa1020560:CDS 20.0%
!! AATGAAGTCAAAAATCAAAT+GGG + chr7_1:44209503-44209522 Msa1020560:CDS 20.0%
!! AAATCAAAAACAAAAAATGG+GGG - chr7_1:44209728-44209747 None:intergenic 20.0%
!! CAAATCAAAAACAAAAAATG+GGG - chr7_1:44209729-44209748 None:intergenic 20.0%
!! CCAAATCAAAAACAAAAAAT+GGG - chr7_1:44209730-44209749 None:intergenic 20.0%
!! ACCAAATCAAAAACAAAAAA+TGG - chr7_1:44209731-44209750 None:intergenic 20.0%
!!! AAAACATATCCCTTTTTTTA+AGG + chr7_1:44209788-44209807 Msa1020560:intron 20.0%
!!! AAACATATCCCTTTTTTTAA+GGG + chr7_1:44209789-44209808 Msa1020560:intron 20.0%
!!! TTTTTGTTGTGTGTATTTTA+AGG + chr7_1:44210046-44210065 Msa1020560:intron 20.0%
!! CTCAATTTCAAAGATTAAAT+TGG - chr7_1:44210703-44210722 None:intergenic 20.0%
!!! CAATTTAATCTTTGAAATTG+AGG + chr7_1:44210701-44210720 Msa1020560:intron 20.0%
!!! ATTTAATCTTTGAAATTGAG+GGG + chr7_1:44210703-44210722 Msa1020560:intron 20.0%
!! TTTAAATTAAAATGGGAAAG+GGG + chr7_1:44211172-44211191 Msa1020560:intron 20.0%
!!! AGAGTTTTTTTTAACCTTTT+AGG - chr7_1:44211585-44211604 None:intergenic 20.0%
!! ACAATTTAATAAACCACTTA+TGG + chr7_1:44211927-44211946 Msa1020560:intron 20.0%
!!! TATTTTTAGCTTATTTCCAT+AGG - chr7_1:44212070-44212089 None:intergenic 20.0%
!! TATGGAAATAAGCTAAAAAT+AGG + chr7_1:44212069-44212088 Msa1020560:intron 20.0%
!!! ATTTATTTGAGTTTATCTAC+TGG - chr7_1:44212160-44212179 None:intergenic 20.0%
!! TTGCTAATGAGAATATAAAT+TGG - chr7_1:44212295-44212314 None:intergenic 20.0%
!! AACCAATTTAAAAATCTTCA+TGG - chr7_1:44212592-44212611 None:intergenic 20.0%
!! TAATTCAACATAAAAGATCA+TGG + chr7_1:44213097-44213116 Msa1020560:CDS 20.0%
!!! TAGTAAATGATTTTGAATTG+CGG - chr7_1:44214726-44214745 None:intergenic 20.0%
!!! TATTGATAACATATCAGTTT+TGG + chr7_1:44214800-44214819 Msa1020560:three_prime_UTR 20.0%
!!! TGATTCTTCTAGTTAATATT+AGG + chr7_1:44214835-44214854 Msa1020560:three_prime_UTR 20.0%
!! AATCTTATCAGATACAAAAA+TGG - chr7_1:44214912-44214931 None:intergenic 20.0%
!! GAATGAAAAGAATTAAGAAA+TGG + chr7_1:44214956-44214975 Msa1020560:three_prime_UTR 20.0%
! TTTGTTACTACAACAATGAA+AGG + chr7_1:44209471-44209490 Msa1020560:exon 25.0%
! TTGTTACTACAACAATGAAA+GGG + chr7_1:44209472-44209491 Msa1020560:exon 25.0%
!! AAATCTGGTTTATCAAAGAT+GGG - chr7_1:44209648-44209667 None:intergenic 25.0%
!! AAAATCTGGTTTATCAAAGA+TGG - chr7_1:44209649-44209668 None:intergenic 25.0%
! AGTAGTTTACATACATTAGT+AGG - chr7_1:44209672-44209691 None:intergenic 25.0%
!!! CCCATTTTTTGTTTTTGATT+TGG + chr7_1:44209727-44209746 Msa1020560:intron 25.0%
!!! AACATATCCCTTTTTTTAAG+GGG + chr7_1:44209790-44209809 Msa1020560:intron 25.0%
! AACTAAACCCCTTAAAAAAA+GGG - chr7_1:44209800-44209819 None:intergenic 25.0%
! AAACTAAACCCCTTAAAAAA+AGG - chr7_1:44209801-44209820 None:intergenic 25.0%
!!! AACAACTTTGTCATTTTCTA+AGG - chr7_1:44209844-44209863 None:intergenic 25.0%
!!! TCTCTTTGTTGTGTATTTTA+AGG + chr7_1:44210080-44210099 Msa1020560:intron 25.0%
! TGGTTCATATAGAAGATTAT+GGG + chr7_1:44210132-44210151 Msa1020560:CDS 25.0%
! TTGGTCAAAAGATAAATCAA+TGG - chr7_1:44210295-44210314 None:intergenic 25.0%
! AATTGCTACATATAGGAAAT+TGG - chr7_1:44210506-44210525 None:intergenic 25.0%
!! GATTCTTTTGAATCACTATA+AGG + chr7_1:44210556-44210575 Msa1020560:intron 25.0%
!!! CATATAAAAAGCATCATAAC+CGG - chr7_1:44210598-44210617 None:intergenic 25.0%
!! CAAAGATTAAATTGGTGATT+CGG - chr7_1:44210695-44210714 None:intergenic 25.0%
! GTAGAATGCTATTAATTTCA+GGG - chr7_1:44210773-44210792 None:intergenic 25.0%
! ATTATTGCAAAGAACTAATG+TGG - chr7_1:44210795-44210814 None:intergenic 25.0%
! ACAGCATATATGAATAATGT+CGG + chr7_1:44211355-44211374 Msa1020560:intron 25.0%
! AAATTCTCACTAAGAATAGT+TGG + chr7_1:44211394-44211413 Msa1020560:intron 25.0%
! CTATATATAAAGACTTTGAC+TGG - chr7_1:44211545-44211564 None:intergenic 25.0%
!!! CAAATGGATTTATTTTTGTC+CGG + chr7_1:44211635-44211654 Msa1020560:CDS 25.0%
! GTGAGGTTATTTATTGTTTA+AGG + chr7_1:44211691-44211710 Msa1020560:intron 25.0%
!!! TCTTTTTTAGATAAGTGATG+TGG + chr7_1:44211769-44211788 Msa1020560:intron 25.0%
! ATAAGCACTTATCATATAAG+CGG + chr7_1:44211951-44211970 Msa1020560:intron 25.0%
! TTATAGACATAACTGTCATA+TGG + chr7_1:44212092-44212111 Msa1020560:intron 25.0%
! TATAGAGCATATGAGATTTA+GGG - chr7_1:44212196-44212215 None:intergenic 25.0%
! ATATAGAGCATATGAGATTT+AGG - chr7_1:44212197-44212216 None:intergenic 25.0%
!! TTTTGCATACCTATATAATG+AGG + chr7_1:44212268-44212287 Msa1020560:CDS 25.0%
! TAAATTGGTCCTCATTATAT+AGG - chr7_1:44212280-44212299 None:intergenic 25.0%
! AACTCTTCCAAAATATCTAA+AGG + chr7_1:44212334-44212353 Msa1020560:CDS 25.0%
! ACTCTTCCAAAATATCTAAA+GGG + chr7_1:44212335-44212354 Msa1020560:CDS 25.0%
! ACATGATGCAAGTAATAAAA+AGG - chr7_1:44212413-44212432 None:intergenic 25.0%
! GATAAAATTTGAATTCTGGT+AGG - chr7_1:44212554-44212573 None:intergenic 25.0%
!! CACCATGAAGATTTTTAAAT+TGG + chr7_1:44212587-44212606 Msa1020560:intron 25.0%
! CCAAAAGGGATAAAATATTA+TGG - chr7_1:44212852-44212871 None:intergenic 25.0%
!! CCATAATATTTTATCCCTTT+TGG + chr7_1:44212849-44212868 Msa1020560:intron 25.0%
! TGAAAATTCAGAAACCAAAA+GGG - chr7_1:44212866-44212885 None:intergenic 25.0%
! ATGAAAATTCAGAAACCAAA+AGG - chr7_1:44212867-44212886 None:intergenic 25.0%
! ATATGTTTAAACTTCTGACA+AGG + chr7_1:44213218-44213237 Msa1020560:intron 25.0%
! GATGCAATTATATATGTATC+TGG + chr7_1:44213361-44213380 Msa1020560:CDS 25.0%
! TTGAGAAAAACATTAATCGA+TGG + chr7_1:44214083-44214102 Msa1020560:CDS 25.0%
! GGTTTATTCTTTAAACAAAG+TGG + chr7_1:44214329-44214348 Msa1020560:CDS 25.0%
! TTATTCTTTAAACAAAGTGG+TGG + chr7_1:44214332-44214351 Msa1020560:CDS 25.0%
! TAAAGAAGAAAATCAATTCG+AGG + chr7_1:44214385-44214404 Msa1020560:CDS 25.0%
! AAGGAACATGGTTTAAATTA+TGG + chr7_1:44214590-44214609 Msa1020560:three_prime_UTR 25.0%
!! AGTAAATGATTTTGAATTGC+GGG - chr7_1:44214725-44214744 None:intergenic 25.0%
! TAGCACGTAACTTATATTTA+AGG - chr7_1:44214777-44214796 None:intergenic 25.0%
TGTTACTACAACAATGAAAG+GGG + chr7_1:44209473-44209492 Msa1020560:exon 30.0%
AAGTCAAAAATCAAATGGGT+TGG + chr7_1:44209507-44209526 Msa1020560:CDS 30.0%
CTTCAATTACTATCTTCTCT+TGG + chr7_1:44209619-44209638 Msa1020560:CDS 30.0%
CATACATTAGTAGGAAAATC+TGG - chr7_1:44209663-44209682 None:intergenic 30.0%
GTGGTTCATATAGAAGATTA+TGG + chr7_1:44210131-44210150 Msa1020560:CDS 30.0%
GGTTCATATAGAAGATTATG+GGG + chr7_1:44210133-44210152 Msa1020560:CDS 30.0%
! AAAGCATCAAGATGAAAAGT+TGG - chr7_1:44210224-44210243 None:intergenic 30.0%
TCATCTGTTTCATGTATGTT+TGG + chr7_1:44210401-44210420 Msa1020560:intron 30.0%
! TTCATGTATGTTTGGAATCA+CGG + chr7_1:44210409-44210428 Msa1020560:intron 30.0%
! ACAATGTGACATAATGCTTT+TGG - chr7_1:44210476-44210495 None:intergenic 30.0%
TTCCTATATGTAGCAATTTC+CGG + chr7_1:44210508-44210527 Msa1020560:intron 30.0%
ACAAAACAAAAGATTCTTCC+CGG - chr7_1:44210530-44210549 None:intergenic 30.0%
GGTAGAATGCTATTAATTTC+AGG - chr7_1:44210774-44210793 None:intergenic 30.0%
ATTGTTGTCTGTGTATTGTA+TGG - chr7_1:44210956-44210975 None:intergenic 30.0%
GTTGAGACAAACTAAAATCA+GGG - chr7_1:44211148-44211167 None:intergenic 30.0%
TGTTGAGACAAACTAAAATC+AGG - chr7_1:44211149-44211168 None:intergenic 30.0%
GTTTGACCTTATAATCTCAA+GGG - chr7_1:44211259-44211278 None:intergenic 30.0%
AGTTTGACCTTATAATCTCA+AGG - chr7_1:44211260-44211279 None:intergenic 30.0%
TAAAATACATGTGCAAGTGT+TGG - chr7_1:44211310-44211329 None:intergenic 30.0%
AGTATACGGACATAAAAGAA+TGG - chr7_1:44211506-44211525 None:intergenic 30.0%
TTACATCTAACCAGAGTATA+CGG - chr7_1:44211520-44211539 None:intergenic 30.0%
CTTTCTAATATTCGCCTAAA+AGG + chr7_1:44211568-44211587 Msa1020560:intron 30.0%
!!! TTTATTTTTGTCCGGATACA+AGG + chr7_1:44211643-44211662 Msa1020560:CDS 30.0%
! TTTTCATGAGATCAGGAATT+CGG + chr7_1:44211669-44211688 Msa1020560:CDS 30.0%
ACTGAATGCTTCTTTAATAC+AGG - chr7_1:44212440-44212459 None:intergenic 30.0%
!! TGTATTAAAGAAGCATTCAG+TGG + chr7_1:44212439-44212458 Msa1020560:CDS 30.0%
CAACATATGGTTCATGTATT+AGG + chr7_1:44212504-44212523 Msa1020560:intron 30.0%
CGGAGATAAAATTTGAATTC+TGG - chr7_1:44212558-44212577 None:intergenic 30.0%
CCTGAAAAGAAGAAAGAAAA+GGG - chr7_1:44212667-44212686 None:intergenic 30.0%
CTTTGATATTCTTCGAAAGA+GGG - chr7_1:44212701-44212720 None:intergenic 30.0%
! TTTCTGCTAAAATTTTGCAG+AGG + chr7_1:44212777-44212796 Msa1020560:CDS 30.0%
CACAAATAGAATTACATACC+TGG - chr7_1:44212990-44213009 None:intergenic 30.0%
CAGGTATGTAATTCTATTTG+TGG + chr7_1:44212988-44213007 Msa1020560:intron 30.0%
AATCTTGATTTCTTCCAGAT+TGG + chr7_1:44213307-44213326 Msa1020560:intron 30.0%
GCAATTATATATGTATCTGG+AGG + chr7_1:44213364-44213383 Msa1020560:CDS 30.0%
!!! AGTTTTTTAACTTCCTCGAA+AGG - chr7_1:44213538-44213557 None:intergenic 30.0%
ATCAGGTTCATTATCACTTT+CGG - chr7_1:44213659-44213678 None:intergenic 30.0%
AAATGCTCATAAGTTACTGT+GGG + chr7_1:44213702-44213721 Msa1020560:CDS 30.0%
ATAGAGTTTATTTACCTGTC+AGG - chr7_1:44213868-44213887 None:intergenic 30.0%
CATACATAGAAACATCAATC+AGG - chr7_1:44213891-44213910 None:intergenic 30.0%
! TTGCAAGGTATTAAAACAAG+TGG - chr7_1:44213956-44213975 None:intergenic 30.0%
GATAAGGAAAATGAAGATGA+TGG + chr7_1:44214284-44214303 Msa1020560:CDS 30.0%
GTTCATCTAACAATCGATAA+TGG + chr7_1:44214462-44214481 Msa1020560:three_prime_UTR 30.0%
ACCAATTATGTACATGAATC+CGG - chr7_1:44214499-44214518 None:intergenic 30.0%
! ATTTAGTTTCAGGTGAAGAA+AGG + chr7_1:44214545-44214564 Msa1020560:three_prime_UTR 30.0%
TTAAACCATGTTCCTTAGTA+AGG - chr7_1:44214586-44214605 None:intergenic 30.0%
!!! TGCCGCAAATTTTTTAAATG+CGG + chr7_1:44214628-44214647 Msa1020560:three_prime_UTR 30.0%
TGCCGCATTTAAAAAATTTG+CGG - chr7_1:44214633-44214652 None:intergenic 30.0%
! TTTTTAAATGCGGCAAAATG+TGG + chr7_1:44214638-44214657 Msa1020560:three_prime_UTR 30.0%
TTAACTAGAAGAATCATGCA+AGG - chr7_1:44214831-44214850 None:intergenic 30.0%
TATTAGGCTTAAGTTCACTT+TGG + chr7_1:44214851-44214870 Msa1020560:three_prime_UTR 30.0%
AGAATTAAGAAATGGCAATG+TGG + chr7_1:44214964-44214983 Msa1020560:three_prime_UTR 30.0%
!! ATCAAATGGGTTGGTTTAGT+TGG + chr7_1:44209516-44209535 Msa1020560:CDS 35.0%
!! TCAAATGGGTTGGTTTAGTT+GGG + chr7_1:44209517-44209536 Msa1020560:CDS 35.0%
TCAGTGTGTAGTTTGAGTAT+TGG + chr7_1:44209868-44209887 Msa1020560:intron 35.0%
AAACCAATGAACAAAGACAG+TGG - chr7_1:44209951-44209970 None:intergenic 35.0%
! ACTGTCTTTGTTCATTGGTT+TGG + chr7_1:44209950-44209969 Msa1020560:intron 35.0%
TTATTGTTTGTGATGCAGAG+TGG + chr7_1:44210112-44210131 Msa1020560:intron 35.0%
ATATAGAAGATTATGGGGAC+AGG + chr7_1:44210138-44210157 Msa1020560:CDS 35.0%
! TGACCAAACTTGTGAACTTT+TGG + chr7_1:44210308-44210327 Msa1020560:intron 35.0%
! CAAACTTGTGAACTTTTGGT+GGG + chr7_1:44210312-44210331 Msa1020560:intron 35.0%
! AAACTTGTGAACTTTTGGTG+GGG + chr7_1:44210313-44210332 Msa1020560:intron 35.0%
TGCTACATATAGGAAATTGG+TGG - chr7_1:44210503-44210522 None:intergenic 35.0%
TCCTATATGTAGCAATTTCC+GGG + chr7_1:44210509-44210528 Msa1020560:intron 35.0%
AGGATGAAGATTCGATTATC+CGG + chr7_1:44210576-44210595 Msa1020560:intron 35.0%
GAGATTATGACTGATACATG+TGG + chr7_1:44210631-44210650 Msa1020560:intron 35.0%
! AAAGGCTTTTCCCTATTAGA+TGG - chr7_1:44210670-44210689 None:intergenic 35.0%
!! TAAATTGGTGATTCGGTCAA+AGG - chr7_1:44210688-44210707 None:intergenic 35.0%
! TCTTTTATGTCCGTATACTC+TGG + chr7_1:44211507-44211526 Msa1020560:intron 35.0%
AATCCATTTGATTGTGAACC+AGG - chr7_1:44211625-44211644 None:intergenic 35.0%
TAGAAGCTTGCATTTAACTC+TGG + chr7_1:44211890-44211909 Msa1020560:intron 35.0%
! CATTTAACTCTGGTCCTTTT+TGG + chr7_1:44211900-44211919 Msa1020560:intron 35.0%
ATAAGTGCTTATGCCATAAG+TGG - chr7_1:44211943-44211962 None:intergenic 35.0%
! CTTGCACCCTTTAGATATTT+TGG - chr7_1:44212344-44212363 None:intergenic 35.0%
! CAAAATATCTAAAGGGTGCA+AGG + chr7_1:44212342-44212361 Msa1020560:CDS 35.0%
!! ATCGTTTAAAGTGCCGTATT+CGG + chr7_1:44212382-44212401 Msa1020560:CDS 35.0%
TAAAAAGGTGATGCCGAATA+CGG - chr7_1:44212398-44212417 None:intergenic 35.0%
TTGCAGGTAAAGACAACATA+TGG + chr7_1:44212491-44212510 Msa1020560:intron 35.0%
! CCCTTTTCTTTCTTCTTTTC+AGG + chr7_1:44212664-44212683 Msa1020560:intron 35.0%
GCCTGAAAAGAAGAAAGAAA+AGG - chr7_1:44212668-44212687 None:intergenic 35.0%
CCTTTGATATTCTTCGAAAG+AGG - chr7_1:44212702-44212721 None:intergenic 35.0%
CCTCTTTCGAAGAATATCAA+AGG + chr7_1:44212699-44212718 Msa1020560:CDS 35.0%
! CTAAAATTTTGCAGAGGCAA+GGG + chr7_1:44212783-44212802 Msa1020560:intron 35.0%
TCGTATTCGAGCTTCAATAA+TGG + chr7_1:44213040-44213059 Msa1020560:intron 35.0%
AGATCATGGATGATAAAACG+TGG + chr7_1:44213111-44213130 Msa1020560:CDS 35.0%
GATCATGGATGATAAAACGT+GGG + chr7_1:44213112-44213131 Msa1020560:CDS 35.0%
ATAAAACGTGGGATTGTCAA+AGG + chr7_1:44213123-44213142 Msa1020560:CDS 35.0%
TAAAACGTGGGATTGTCAAA+GGG + chr7_1:44213124-44213143 Msa1020560:CDS 35.0%
TAAACTTCTGACAAGGCTAA+AGG + chr7_1:44213225-44213244 Msa1020560:intron 35.0%
TCTGGAAGAAATCAAGATTG+TGG - chr7_1:44213306-44213325 None:intergenic 35.0%
! TTTTCAAACATCGCATGAAG+AGG - chr7_1:44213421-44213440 None:intergenic 35.0%
AACTTCTCTTAGTACACCTT+GGG + chr7_1:44213453-44213472 Msa1020560:CDS 35.0%
TAGATCTTAATCATCTCCCA+AGG - chr7_1:44213472-44213491 None:intergenic 35.0%
TGGGAGATGATTAAGATCTA+TGG + chr7_1:44213472-44213491 Msa1020560:CDS 35.0%
GATTAAGATCTATGGACAAG+AGG + chr7_1:44213480-44213499 Msa1020560:CDS 35.0%
!!! TTTTTAACTTCCTCGAAAGG+TGG - chr7_1:44213535-44213554 None:intergenic 35.0%
ACCGAAATCGTATAACATAG+AGG + chr7_1:44213615-44213634 Msa1020560:CDS 35.0%
CCCTCTATGTTATACGATTT+CGG - chr7_1:44213619-44213638 None:intergenic 35.0%
CCGAAATCGTATAACATAGA+GGG + chr7_1:44213616-44213635 Msa1020560:CDS 35.0%
AATCGTATAACATAGAGGGT+TGG + chr7_1:44213620-44213639 Msa1020560:CDS 35.0%
CAAATGCTCATAAGTTACTG+TGG + chr7_1:44213701-44213720 Msa1020560:CDS 35.0%
AAATCCAGGAATGAACACAT+CGG - chr7_1:44213758-44213777 None:intergenic 35.0%
!! AATTTTGCTAGCTTGGTGAT+GGG + chr7_1:44213802-44213821 Msa1020560:CDS 35.0%
! TCTGCATTAGCAGAAGTATA+TGG - chr7_1:44213979-44213998 None:intergenic 35.0%
ATACTTCTGCTAATGCAGAA+AGG + chr7_1:44213980-44213999 Msa1020560:intron 35.0%
!! TACGATTAGCTTGAAACATG+TGG - chr7_1:44214037-44214056 None:intergenic 35.0%
TCTTCCATTCCTTTATCTCT+TGG + chr7_1:44214206-44214225 Msa1020560:CDS 35.0%
AACACCAAGAGATAAAGGAA+TGG - chr7_1:44214213-44214232 None:intergenic 35.0%
! CAAAGTGGTGGAAATAATGA+AGG + chr7_1:44214344-44214363 Msa1020560:CDS 35.0%
!! GATAATGGATTCACATTCTC+CGG + chr7_1:44214477-44214496 Msa1020560:three_prime_UTR 35.0%
TCCGGATTCATGTACATAAT+TGG + chr7_1:44214495-44214514 Msa1020560:three_prime_UTR 35.0%
TCTTCACCTGAAACTAAATC+CGG - chr7_1:44214544-44214563 None:intergenic 35.0%
TTAAATTATGGTTGCAGCTG+TGG + chr7_1:44214602-44214621 Msa1020560:three_prime_UTR 35.0%
CTCTCTCTCTATTGTCTTTG+TGG + chr7_1:44209284-44209303 Msa1020560:five_prime_UTR 40.0%
CACGTGTTAAAGCATGTCTT+TGG - chr7_1:44209337-44209356 None:intergenic 40.0%
ACTCAGTTACACTTCTCAAG+AGG + chr7_1:44209403-44209422 Msa1020560:five_prime_UTR 40.0%
CTCAGTTACACTTCTCAAGA+GGG + chr7_1:44209404-44209423 Msa1020560:five_prime_UTR 40.0%
ACACCACTGTCTTTGTTCAT+TGG + chr7_1:44209945-44209964 Msa1020560:intron 40.0%
TACCCAGATTCAAATCCAAG+AGG + chr7_1:44210181-44210200 Msa1020560:CDS 40.0%
ACCCAGATTCAAATCCAAGA+GGG + chr7_1:44210182-44210201 Msa1020560:CDS 40.0%
ACCCTCTTGGATTTGAATCT+GGG - chr7_1:44210186-44210205 None:intergenic 40.0%
TACCCTCTTGGATTTGAATC+TGG - chr7_1:44210187-44210206 None:intergenic 40.0%
!! AATCCAAGAGGGTATTATCC+AGG + chr7_1:44210193-44210212 Msa1020560:CDS 40.0%
TAACCTGGATAATACCCTCT+TGG - chr7_1:44210199-44210218 None:intergenic 40.0%
GATGAAAAGTTGGACTAACC+TGG - chr7_1:44210214-44210233 None:intergenic 40.0%
CCACCAAAAGTTCACAAGTT+TGG - chr7_1:44210314-44210333 None:intergenic 40.0%
! CCAAACTTGTGAACTTTTGG+TGG + chr7_1:44210311-44210330 Msa1020560:intron 40.0%
! AACTTGTGAACTTTTGGTGG+GGG + chr7_1:44210314-44210333 Msa1020560:intron 40.0%
! ATGTATGTTTGGAATCACGG+TGG + chr7_1:44210412-44210431 Msa1020560:intron 40.0%
TCCCGGAAATTGCTACATAT+AGG - chr7_1:44210513-44210532 None:intergenic 40.0%
! TGATACATGTGGTTAGCTCT+TGG + chr7_1:44210642-44210661 Msa1020560:intron 40.0%
! TTGAAAGCATGTCCAGTGTA+CGG - chr7_1:44211034-44211053 None:intergenic 40.0%
CTATAGTGTCAGTGCTTCAT+AGG + chr7_1:44211055-44211074 Msa1020560:intron 40.0%
TCAAGGGACGTAGTTCAAAT+CGG - chr7_1:44211243-44211262 None:intergenic 40.0%
CTACGTCCCTTGAGATTATA+AGG + chr7_1:44211250-44211269 Msa1020560:intron 40.0%
CACCATTCAGCATATGCATT+CGG + chr7_1:44211432-44211451 Msa1020560:intron 40.0%
TTATCTTTCCTGACAGATCC+TGG + chr7_1:44211604-44211623 Msa1020560:intron 40.0%
GATCCTGGTTCACAATCAAA+TGG + chr7_1:44211619-44211638 Msa1020560:intron 40.0%
! ATTTTTGTCCGGATACAAGG+TGG + chr7_1:44211646-44211665 Msa1020560:CDS 40.0%
CATGAAAACCACCTTGTATC+CGG - chr7_1:44211657-44211676 None:intergenic 40.0%
! AAGGTGGTTTTCATGAGATC+AGG + chr7_1:44211662-44211681 Msa1020560:CDS 40.0%
! CTGGTTGTTGATTGGATTTC+AGG - chr7_1:44211833-44211852 None:intergenic 40.0%
TAGCTATCATAGAGAGCCTA+TGG + chr7_1:44212051-44212070 Msa1020560:intron 40.0%
!! AAGCACTTCTGAGACTGTTT+GGG - chr7_1:44212134-44212153 None:intergenic 40.0%
!! TAAGCACTTCTGAGACTGTT+TGG - chr7_1:44212135-44212154 None:intergenic 40.0%
GAATACGGCACTTTAAACGA+TGG - chr7_1:44212383-44212402 None:intergenic 40.0%
! GTCGAACTAGTTGTTTCCAA+CGG + chr7_1:44212461-44212480 Msa1020560:CDS 40.0%
TGATATTCTTCGAAAGAGGG+AGG - chr7_1:44212698-44212717 None:intergenic 40.0%
AAAGTTCGTGAACTTCCTGT+CGG - chr7_1:44212760-44212779 None:intergenic 40.0%
! GCTAAAATTTTGCAGAGGCA+AGG + chr7_1:44212782-44212801 Msa1020560:intron 40.0%
! AGAGAGTCTTTAGCTTACCA+CGG + chr7_1:44212949-44212968 Msa1020560:CDS 40.0%
TCGAGCTTCAATAATGGTCT+TGG + chr7_1:44213046-44213065 Msa1020560:intron 40.0%
! ATGGTCTTGGAATCTTTGCT+AGG + chr7_1:44213059-44213078 Msa1020560:intron 40.0%
TGCATCCTTCGAATATCCAT+AGG - chr7_1:44213347-44213366 None:intergenic 40.0%
GAACTTCTCTTAGTACACCT+TGG + chr7_1:44213452-44213471 Msa1020560:CDS 40.0%
CGAGGAAGTTAAAAAACTCG+CGG + chr7_1:44213540-44213559 Msa1020560:CDS 40.0%
AAGTTAAAAAACTCGCGGCT+TGG + chr7_1:44213545-44213564 Msa1020560:CDS 40.0%
! GTATAACATAGAGGGTTGGT+GGG + chr7_1:44213624-44213643 Msa1020560:CDS 40.0%
!! TATAACATAGAGGGTTGGTG+GGG + chr7_1:44213625-44213644 Msa1020560:CDS 40.0%
TGAACCTGATAGCACAGTAA+TGG + chr7_1:44213669-44213688 Msa1020560:CDS 40.0%
AGTTCCATTACTGTGCTATC+AGG - chr7_1:44213676-44213695 None:intergenic 40.0%
! ATAGCACAGTAATGGAACTG+AGG + chr7_1:44213677-44213696 Msa1020560:CDS 40.0%
! GCATTCGAATTTTGCTAGCT+TGG + chr7_1:44213795-44213814 Msa1020560:CDS 40.0%
!! GAATTTTGCTAGCTTGGTGA+TGG + chr7_1:44213801-44213820 Msa1020560:CDS 40.0%
CAAAGACATTTAGACCTGAC+AGG + chr7_1:44213851-44213870 Msa1020560:CDS 40.0%
! AGCAGAAGTATATGGTTGCA+AGG - chr7_1:44213971-44213990 None:intergenic 40.0%
TGTTTCAAGCTAATCGTACG+TGG + chr7_1:44214039-44214058 Msa1020560:CDS 40.0%
GGATGAGAGAGAAAGGATAA+TGG - chr7_1:44214137-44214156 None:intergenic 40.0%
AAACATGAACATTCAGGGAC+TGG - chr7_1:44214158-44214177 None:intergenic 40.0%
TCCCTGAATGTTCATGTTTG+CGG + chr7_1:44214159-44214178 Msa1020560:CDS 40.0%
TGCGTAACACCAAGAGATAA+AGG - chr7_1:44214218-44214237 None:intergenic 40.0%
GATGACGATGATTCTGTATC+TGG + chr7_1:44214308-44214327 Msa1020560:CDS 40.0%
CATCCAAGGTAATGTGTTGA+TGG + chr7_1:44214440-44214459 Msa1020560:three_prime_UTR 40.0%
GAACCATCAACACATTACCT+TGG - chr7_1:44214446-44214465 None:intergenic 40.0%
AAACTAAATCCGGTATGCAG+CGG - chr7_1:44214534-44214553 None:intergenic 40.0%
! TGCATACCGGATTTAGTTTC+AGG + chr7_1:44214535-44214554 Msa1020560:three_prime_UTR 40.0%
AAAGCCTATCCACCTTACTA+AGG + chr7_1:44214571-44214590 Msa1020560:three_prime_UTR 40.0%
TGTTCCTTAGTAAGGTGGAT+AGG - chr7_1:44214578-44214597 None:intergenic 40.0%
ATCCACCTTACTAAGGAACA+TGG + chr7_1:44214578-44214597 Msa1020560:three_prime_UTR 40.0%
AACCATGTTCCTTAGTAAGG+TGG - chr7_1:44214583-44214602 None:intergenic 40.0%
AAGAGGGAAGAGAGAGAAAG+AGG + chr7_1:44209420-44209439 Msa1020560:five_prime_UTR 45.0%
AGAGGGAAGAGAGAGAAAGA+GGG + chr7_1:44209421-44209440 Msa1020560:five_prime_UTR 45.0%
! GAACTTTTGGTGGGGGTTTA+AGG + chr7_1:44210321-44210340 Msa1020560:intron 45.0%
AGCTCTTGGCTCCATCTAAT+AGG + chr7_1:44210656-44210675 Msa1020560:intron 45.0%
GCTCTTGGCTCCATCTAATA+GGG + chr7_1:44210657-44210676 Msa1020560:intron 45.0%
TCAAATGTGAGCACATGTGC+CGG + chr7_1:44211000-44211019 Msa1020560:intron 45.0%
GACCGAATGCATATGCTGAA+TGG - chr7_1:44211437-44211456 None:intergenic 45.0%
ATTGTGAACCAGGATCTGTC+AGG - chr7_1:44211615-44211634 None:intergenic 45.0%
! ATGAGATCAGGAATTCGGTG+AGG + chr7_1:44211674-44211693 Msa1020560:intron 45.0%
CAATCAACAACCAGCAGCAA+GGG + chr7_1:44211839-44211858 Msa1020560:CDS 45.0%
AAAACTCTTGAACTGCGAGC+TGG - chr7_1:44212252-44212271 None:intergenic 45.0%
! AAAGGGTGCAAGGAGAAAGA+AGG + chr7_1:44212352-44212371 Msa1020560:CDS 45.0%
! GAACTAGTTGTTTCCAACGG+CGG + chr7_1:44212464-44212483 Msa1020560:CDS 45.0%
AACGCAATGAATGGACGACT+AGG - chr7_1:44212913-44212932 None:intergenic 45.0%
CCAGGATCAAACGCAATGAA+TGG - chr7_1:44212922-44212941 None:intergenic 45.0%
CCATTCATTGCGTTTGATCC+TGG + chr7_1:44212919-44212938 Msa1020560:CDS 45.0%
AAAGACTCTCTAGTCATGCC+AGG - chr7_1:44212940-44212959 None:intergenic 45.0%
GCTGAGGAGTTTAAGAGAGA+CGG - chr7_1:44213017-44213036 None:intergenic 45.0%
AGCTCGAATACGAAAAGCTG+AGG - chr7_1:44213033-44213052 None:intergenic 45.0%
TCAGCTGAAGCAAGACTGAA+TGG + chr7_1:44213162-44213181 Msa1020560:CDS 45.0%
ATCCTGTCCTTTAATGCCTG+AGG + chr7_1:44213185-44213204 Msa1020560:CDS 45.0%
ACATATTCTCTCACCTCCTC+AGG - chr7_1:44213204-44213223 None:intergenic 45.0%
! GGCTAAAGGCGTGTTTGTTA+TGG + chr7_1:44213239-44213258 Msa1020560:intron 45.0%
! CACGCAGAAGTATACCAATC+TGG - chr7_1:44213324-44213343 None:intergenic 45.0%
GTATCTGGAGGAGAAGTCTT+TGG + chr7_1:44213376-44213395 Msa1020560:CDS 45.0%
AACCTAGTTAATCCTCCTCC+CGG + chr7_1:44213505-44213524 Msa1020560:CDS 45.0%
TTAACTTCCTCGAAAGGTGG+TGG - chr7_1:44213532-44213551 None:intergenic 45.0%
TTATACGATTTCGGTCTCGC+TGG - chr7_1:44213610-44213629 None:intergenic 45.0%
CGTATAACATAGAGGGTTGG+TGG + chr7_1:44213623-44213642 Msa1020560:CDS 45.0%
TGCTCATAAGTTACTGTGGG+AGG + chr7_1:44213705-44213724 Msa1020560:CDS 45.0%
! GTGGGAGGCTATTGATTATG+CGG + chr7_1:44213720-44213739 Msa1020560:CDS 45.0%
ATTCCTGGATTTGACCGTGA+TGG + chr7_1:44213766-44213785 Msa1020560:CDS 45.0%
TTCCTGGATTTGACCGTGAT+GGG + chr7_1:44213767-44213786 Msa1020560:CDS 45.0%
GGGACACAGGTTATACCAAT+CGG + chr7_1:44213822-44213841 Msa1020560:CDS 45.0%
GCCGCAAACATGAACATTCA+GGG - chr7_1:44214163-44214182 None:intergenic 45.0%
TGCCGCAAACATGAACATTC+AGG - chr7_1:44214164-44214183 None:intergenic 45.0%
!! AAAAATAACTATAAAAATTA+TGG - chr7_1:44212531-44212550 None:intergenic 5.0%
TTTGGTGGGGGTTTAAGGAG+AGG + chr7_1:44210326-44210345 Msa1020560:intron 50.0%
TTGGTGGGGGTTTAAGGAGA+GGG + chr7_1:44210327-44210346 Msa1020560:intron 50.0%
ACGTAGTTCAAATCGGACGG+TGG - chr7_1:44211236-44211255 None:intergenic 50.0%
GGGACGTAGTTCAAATCGGA+CGG - chr7_1:44211239-44211258 None:intergenic 50.0%
! CCTTGCTGCTGGTTGTTGAT+TGG - chr7_1:44211841-44211860 None:intergenic 50.0%
CCAATCAACAACCAGCAGCA+AGG + chr7_1:44211838-44211857 Msa1020560:CDS 50.0%
CAACCAGCAGCAAGGGAATA+AGG + chr7_1:44211846-44211865 Msa1020560:CDS 50.0%
GAACCTTATTCCCTTGCTGC+TGG - chr7_1:44211852-44211871 None:intergenic 50.0%
! TCTTCATGGTGTCGAGCAAG+CGG - chr7_1:44212578-44212597 None:intergenic 50.0%
TCATGCTCTTCAGTTCCGAC+AGG + chr7_1:44212742-44212761 Msa1020560:CDS 50.0%
CTCCTCAGGCATTAAAGGAC+AGG - chr7_1:44213190-44213209 None:intergenic 50.0%
CTGTCCTTTAATGCCTGAGG+AGG + chr7_1:44213188-44213207 Msa1020560:CDS 50.0%
CTCACCTCCTCAGGCATTAA+AGG - chr7_1:44213195-44213214 None:intergenic 50.0%
GGTATACTTCTGCGTGCCTA+TGG + chr7_1:44213328-44213347 Msa1020560:CDS 50.0%
GCGTGCCTATGGATATTCGA+AGG + chr7_1:44213339-44213358 Msa1020560:CDS 50.0%
TCTGGAGGAGAAGTCTTTGG+TGG + chr7_1:44213379-44213398 Msa1020560:CDS 50.0%
GAAGCCGATGTGTTCATTCC+TGG + chr7_1:44213751-44213770 Msa1020560:CDS 50.0%
TTCCCATCACGGTCAAATCC+AGG - chr7_1:44213772-44213791 None:intergenic 50.0%
! TGGATTTGACCGTGATGGGA+AGG + chr7_1:44213771-44213790 Msa1020560:CDS 50.0%
! GGATTTGACCGTGATGGGAA+GGG + chr7_1:44213772-44213791 Msa1020560:CDS 50.0%
! GATTTGACCGTGATGGGAAG+GGG + chr7_1:44213773-44213792 Msa1020560:CDS 50.0%
ATGTCTTTGACGCAGCCGAT+TGG - chr7_1:44213840-44213859 None:intergenic 50.0%
CGTGGCTAAAATCAGTTCGC+AGG + chr7_1:44214057-44214076 Msa1020560:CDS 50.0%
AGGGACTGGATGAGAGAGAA+AGG - chr7_1:44214144-44214163 None:intergenic 50.0%
GAGGATCAAGAAGAGCTCGA+GGG + chr7_1:44214404-44214423 Msa1020560:CDS 50.0%
TAAATCCGGTATGCAGCGGT+TGG - chr7_1:44214530-44214549 None:intergenic 50.0%
ATGCGGCAAAATGTGGCATG+CGG + chr7_1:44214645-44214664 Msa1020560:three_prime_UTR 50.0%
TGCGGTCGAAATTGTGGTTG+CGG + chr7_1:44214663-44214682 Msa1020560:three_prime_UTR 50.0%
GAATTGCGGGCGCAATGTAA+AGG - chr7_1:44214712-44214731 None:intergenic 50.0%
ATCACAGAGTTCGCGCCTCA+CGG + chr7_1:44211283-44211302 Msa1020560:intron 55.0%
!! TGTGCAAGTGTTGGTCCGTG+AGG - chr7_1:44211301-44211320 None:intergenic 55.0%
GGAAAAGTTCAGCACAGCCG+TGG - chr7_1:44212969-44212988 None:intergenic 55.0%
! CGGCTGTGCTGAACTTTTCC+AGG + chr7_1:44212969-44212988 Msa1020560:CDS 55.0%
GTCCGGGAGGAGGATTAACT+AGG - chr7_1:44213510-44213529 None:intergenic 55.0%
! TTCCTCGAAAGGTGGTGGTC+CGG - chr7_1:44213527-44213546 None:intergenic 55.0%
TACGATTTCGGTCTCGCTGG+AGG - chr7_1:44213607-44213626 None:intergenic 55.0%
TCGAATGCCCCTTCCCATCA+CGG - chr7_1:44213783-44213802 None:intergenic 55.0%
!! CTAGCTTGGTGATGGGACAC+AGG + chr7_1:44213809-44213828 Msa1020560:CDS 55.0%
TTACGCACCAGTGTCCTGCA+TGG + chr7_1:44214231-44214250 Msa1020560:CDS 55.0%
TGACCATCCATGCAGGACAC+TGG - chr7_1:44214241-44214260 None:intergenic 55.0%
! GGACTAGTGACCATCCATGC+AGG - chr7_1:44214248-44214267 None:intergenic 55.0%
CGAGGATCAAGAAGAGCTCG+AGG + chr7_1:44214403-44214422 Msa1020560:CDS 55.0%
GATCAAGAAGAGCTCGAGGG+TGG + chr7_1:44214407-44214426 Msa1020560:CDS 55.0%
GTGGCGACAGATGACATCCA+AGG + chr7_1:44214426-44214445 Msa1020560:exon 55.0%
TGCTTCCAACCGCTGCATAC+CGG + chr7_1:44214522-44214541 Msa1020560:three_prime_UTR 55.0%
GTGGCATGCGGTCGAAATTG+TGG + chr7_1:44214657-44214676 Msa1020560:three_prime_UTR 55.0%
! GTGAGCACATGTGCCGGTGT+CGG + chr7_1:44211006-44211025 Msa1020560:intron 60.0%
TTCCAACGGCGGATGCTTGC+AGG + chr7_1:44212475-44212494 Msa1020560:CDS 60.0%
TACCTGCAAGCATCCGCCGT+TGG - chr7_1:44212480-44212499 None:intergenic 60.0%
! TCCTCGAAAGGTGGTGGTCC+GGG - chr7_1:44213526-44213545 None:intergenic 60.0%
! CTCGCGGCTTGGAAGAATGC+AGG + chr7_1:44213556-44213575 Msa1020560:CDS 60.0%
GATTTCGGTCTCGCTGGAGG+AGG - chr7_1:44213604-44213623 None:intergenic 60.0%
!! ACATAGAGGGTTGGTGGGGC+TGG + chr7_1:44213629-44213648 Msa1020560:CDS 60.0%
!! CATAGAGGGTTGGTGGGGCT+GGG + chr7_1:44213630-44213649 Msa1020560:CDS 60.0%
GCACCAGTGTCCTGCATGGA+TGG + chr7_1:44214235-44214254 Msa1020560:CDS 60.0%
!! CCAGTGTACGGCACCGACAC+CGG - chr7_1:44211022-44211041 None:intergenic 65.0%
! AAAGGTGGTGGTCCGGGAGG+AGG - chr7_1:44213520-44213539 None:intergenic 65.0%
! TCGAAAGGTGGTGGTCCGGG+AGG - chr7_1:44213523-44213542 None:intergenic 65.0%
TCCCGGACCACCACCTTTCG+AGG + chr7_1:44213522-44213541 Msa1020560:CDS 65.0%
GGAGGAAGTGGACGAGGACG+TGG - chr7_1:44213583-44213602 None:intergenic 65.0%
GGAGGAGGAGGAAGTGGACG+AGG - chr7_1:44213589-44213608 None:intergenic 65.0%
CTCGCTGGAGGAGGAGGAAG+TGG - chr7_1:44213595-44213614 None:intergenic 65.0%
TTCGGTCTCGCTGGAGGAGG+AGG - chr7_1:44213601-44213620 None:intergenic 65.0%
!! CCGGTGTCGGTGCCGTACAC+TGG + chr7_1:44211019-44211038 Msa1020560:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 44209274 44215005 44209274 ID=Msa1020560;Name=Msa1020560
chr7_1 mRNA 44209274 44215005 44209274 ID=Msa1020560-mRNA-1;Parent=Msa1020560;Name=Msa1020560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=212|1|1|1|1|1|10|566|667
chr7_1 exon 44209274 44209677 44209274 ID=Msa1020560-mRNA-1:exon:8539;Parent=Msa1020560-mRNA-1
chr7_1 exon 44210130 44210214 44210130 ID=Msa1020560-mRNA-1:exon:8540;Parent=Msa1020560-mRNA-1
chr7_1 exon 44211620 44211690 44211620 ID=Msa1020560-mRNA-1:exon:8541;Parent=Msa1020560-mRNA-1
chr7_1 exon 44211779 44211867 44211779 ID=Msa1020560-mRNA-1:exon:8542;Parent=Msa1020560-mRNA-1
chr7_1 exon 44212253 44212496 44212253 ID=Msa1020560-mRNA-1:exon:8543;Parent=Msa1020560-mRNA-1
chr7_1 exon 44212686 44212798 44212686 ID=Msa1020560-mRNA-1:exon:8544;Parent=Msa1020560-mRNA-1
chr7_1 exon 44212900 44212990 44212900 ID=Msa1020560-mRNA-1:exon:8545;Parent=Msa1020560-mRNA-1
chr7_1 exon 44213081 44213209 44213081 ID=Msa1020560-mRNA-1:exon:8546;Parent=Msa1020560-mRNA-1
chr7_1 exon 44213325 44213872 44213325 ID=Msa1020560-mRNA-1:exon:8547;Parent=Msa1020560-mRNA-1
chr7_1 exon 44213998 44215005 44213998 ID=Msa1020560-mRNA-1:exon:8548;Parent=Msa1020560-mRNA-1
chr7_1 five_prime_UTR 44209274 44209485 44209274 ID=Msa1020560-mRNA-1:five_prime_utr;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44209486 44209677 44209486 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44210130 44210214 44210130 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44211620 44211690 44211620 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44211779 44211867 44211779 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44212253 44212496 44212253 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44212686 44212798 44212686 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44212900 44212990 44212900 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44213081 44213209 44213081 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44213325 44213872 44213325 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 CDS 44213998 44214439 44213998 ID=Msa1020560-mRNA-1:cds;Parent=Msa1020560-mRNA-1
chr7_1 three_prime_UTR 44214440 44215005 44214440 ID=Msa1020560-mRNA-1:three_prime_utr;Parent=Msa1020560-mRNA-1
Gene Sequence

>Msa1020560

ATGAAAGGGGAAATAAAAATGAAGTCAAAAATCAAATGGGTTGGTTTAGTTGGGATAGTACTTTCAGCTTTTTCAATCTTCATTCATTTTCTATTAGCTAGATTCACTCAACTTAGTGTTTCTGATTATCAATCTTCAATTACTATCTTCTCTTGGAGACCCATCTTTGATAAACCAGATTTTCCTACTAATAGTGGTTCATATAGAAGATTATGGGGACAGGTAAAGAGTCTTGAATCTTTGTACCCAGATTCAAATCCAAGAGGGTATTATCCAGATCCTGGTTCACAATCAAATGGATTTATTTTTGTCCGGATACAAGGTGGTTTTCATGAGATCAGGAATTCGATAAGTGATGTGGTTGTTATTGCTCGACTTCTCAATGCTACATTAGCAATGCCTGAAATCCAATCAACAACCAGCAGCAAGGGAATAAGCTCGCAGTTCAAGAGTTTTGCATACCTATATAATGAGGACCAATTTATATTCTCATTAGCAAAAGATGTCAAAGTAATAAGAACTCTTCCAAAATATCTAAAGGGTGCAAGGAGAAAGAAGGAGATTCCATCGTTTAAAGTGCCGTATTCGGCATCACCTTTTTATTACTTGCATCATGTTCTACCTGTATTAAAGAAGCATTCAGTGGTCGAACTAGTTGTTTCCAACGGCGGATGCTTGCAGGCTACTCTTCCTCCCTCTTTCGAAGAATATCAAAGGCTGAGATGTCGAGTTTCTTTTCATGCTCTTCAGTTCCGACAGGAAGTTCACGAACTTTCTGCTAAAATTTTGCAGAGGTTACGAGCTCCTAGTCGTCCATTCATTGCGTTTGATCCTGGCATGACTAGAGAGTCTTTAGCTTACCACGGCTGTGCTGAACTTTTCCAGGATGTGCATACTGAATTAATTCAACATAAAAGATCATGGATGATAAAACGTGGGATTGTCAAAGGGAAACTTAGAGTCAACTCAGCTGAAGCAAGACTGAATGGATCCTGTCCTTTAATGCCTGAGGAGATTGGTATACTTCTGCGTGCCTATGGATATTCGAAGGATGCAATTATATATGTATCTGGAGGAGAAGTCTTTGGTGGTCAAAGAACATTGATTCCTCTTCATGCGATGTTTGAAAATGTTGTCGATAGAACTTCTCTTAGTACACCTTGGGAGATGATTAAGATCTATGGACAAGAGGTTAACCTAGTTAATCCTCCTCCCGGACCACCACCTTTCGAGGAAGTTAAAAAACTCGCGGCTTGGAAGAATGCAGGTCCACGTCCTCGTCCACTTCCTCCTCCTCCAGCGAGACCGAAATCGTATAACATAGAGGGTTGGTGGGGCTGGGTAGCCGAAAGTGATAATGAACCTGATAGCACAGTAATGGAACTGAGGACAAATGCTCATAAGTTACTGTGGGAGGCTATTGATTATGCGGTTTGCGTTGAAGCCGATGTGTTCATTCCTGGATTTGACCGTGATGGGAAGGGGCATTCGAATTTTGCTAGCTTGGTGATGGGACACAGGTTATACCAATCGGCTGCGTCAAAGACATTTAGACCTGACAGAAAGGAAGCTGCTAAATTTGTAGACGAGATTCGCGACCACATGTTTCAAGCTAATCGTACGTGGCTAAAATCAGTTCGCAGGCATTTGAGAAAAACATTAATCGATGGAATAATTGAAGCGTCAAGTAAATCAAAACCATTATCCTTTCTCTCTCATCCAGTCCCTGAATGTTCATGTTTGCGGCACGACTCTGAAGCATCAAAGAATTCTTCCATTCCTTTATCTCTTGGTGTTACGCACCAGTGTCCTGCATGGATGGTCACTAGTCCAGTTTCTCAATCGAAAGATAAGGAAAATGAAGATGATGGTGATGACGATGATTCTGTATCTGGTTTATTCTTTAAACAAAGTGGTGGAAATAATGAAGGTGATGCAGAAGTAAACACTAAAGAAGAAAATCAATTCGAGGATCAAGAAGAGCTCGAGGGTGGCGACAGATGA
Protein sequence

>Msa1020560

MKGEIKMKSKIKWVGLVGIVLSAFSIFIHFLLARFTQLSVSDYQSSITIFSWRPIFDKPDFPTNSGSYRRLWGQVKSLESLYPDSNPRGYYPDPGSQSNGFIFVRIQGGFHEIRNSISDVVVIARLLNATLAMPEIQSTTSSKGISSQFKSFAYLYNEDQFIFSLAKDVKVIRTLPKYLKGARRKKEIPSFKVPYSASPFYYLHHVLPVLKKHSVVELVVSNGGCLQATLPPSFEEYQRLRCRVSFHALQFRQEVHELSAKILQRLRAPSRPFIAFDPGMTRESLAYHGCAELFQDVHTELIQHKRSWMIKRGIVKGKLRVNSAEARLNGSCPLMPEEIGILLRAYGYSKDAIIYVSGGEVFGGQRTLIPLHAMFENVVDRTSLSTPWEMIKIYGQEVNLVNPPPGPPPFEEVKKLAAWKNAGPRPRPLPPPPARPKSYNIEGWWGWVAESDNEPDSTVMELRTNAHKLLWEAIDYAVCVEADVFIPGFDRDGKGHSNFASLVMGHRLYQSAASKTFRPDRKEAAKFVDEIRDHMFQANRTWLKSVRRHLRKTLIDGIIEASSKSKPLSFLSHPVPECSCLRHDSEASKNSSIPLSLGVTHQCPAWMVTSPVSQSKDKENEDDGDDDDSVSGLFFKQSGGNNEGDAEVNTKEENQFEDQEELEGGDR*