Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024720 | KEH23190.1 | 89.474 | 399 | 9 | 1 | 1 | 366 | 193 | 591 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024720 | sp|Q96328|SAC8_ARATH | 61.893 | 391 | 115 | 2 | 9 | 366 | 199 | 588 | 1.62e-176 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024720 | A0A072UBG4 | 89.474 | 399 | 9 | 1 | 1 | 366 | 193 | 591 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa1024720 | 0.807927 | 3.980317e-50 | -8.615850e-47 |
| Msa0036140 | Msa1024720 | 0.817514 | 3.170934e-52 | -8.615850e-47 |
| Msa0045790 | Msa1024720 | 0.812332 | 4.471437e-51 | -8.615850e-47 |
| Msa0046160 | Msa1024720 | 0.812804 | 3.525118e-51 | -8.615850e-47 |
| Msa0089750 | Msa1024720 | 0.800103 | 1.686364e-48 | -8.615850e-47 |
| Msa0654310 | Msa1024720 | 0.810537 | 1.097078e-50 | -8.615850e-47 |
| Msa0740510 | Msa1024720 | 0.802979 | 4.337543e-49 | -8.615850e-47 |
| Msa0784480 | Msa1024720 | 0.825784 | 3.879921e-54 | -8.615850e-47 |
| Msa0818060 | Msa1024720 | 0.815662 | 8.242222e-52 | -8.615850e-47 |
| Msa0820770 | Msa1024720 | 0.808040 | 3.765235e-50 | -8.615850e-47 |
| Msa0999680 | Msa1024720 | 0.809378 | 1.948815e-50 | -8.615850e-47 |
| Msa1024720 | Msa1048270 | 0.811873 | 5.630457e-51 | -8.615850e-47 |
| Msa1024720 | Msa1054990 | 0.825560 | 4.385319e-54 | -8.615850e-47 |
| Msa1024720 | Msa1083840 | 0.805172 | 1.517568e-49 | -8.615850e-47 |
| Msa1024720 | Msa1162780 | 0.800942 | 1.137616e-48 | -8.615850e-47 |
| Msa1024720 | Msa1204530 | 0.806801 | 6.896726e-50 | -8.615850e-47 |
| Msa1024720 | Msa1225130 | 0.831337 | 1.767259e-55 | -8.615850e-47 |
| Msa1024720 | Msa1246360 | 0.804187 | 2.436279e-49 | -8.615850e-47 |
| Msa1024720 | Msa1250530 | 0.827947 | 1.180666e-54 | -8.615850e-47 |
| Msa1024720 | Msa1269890 | 0.802294 | 6.005960e-49 | -8.615850e-47 |
| Msa1024720 | Msa1277690 | 0.808326 | 3.272575e-50 | -8.615850e-47 |
| Msa1024720 | Msa1308870 | 0.815381 | 9.517235e-52 | -8.615850e-47 |
| Msa1024720 | Msa1331000 | 0.816750 | 4.707143e-52 | -8.615850e-47 |
| Msa1024720 | Msa1331320 | 0.813032 | 3.142116e-51 | -8.615850e-47 |
| Msa1024720 | Msa1394380 | 0.800639 | 1.311265e-48 | -8.615850e-47 |
| Msa1024720 | Msa1409700 | 0.807267 | 5.495822e-50 | -8.615850e-47 |
| Msa1024720 | Msa1418850 | 0.803000 | 4.296159e-49 | -8.615850e-47 |
| Msa1024720 | Msa1435270 | 0.811556 | 6.598698e-51 | -8.615850e-47 |
| Msa1024720 | Msa1436480 | 0.810449 | 1.146246e-50 | -8.615850e-47 |
| Msa1024720 | Msa1448560 | 0.807511 | 4.877769e-50 | -8.615850e-47 |
| Msa1024720 | Msa1463900 | 0.817463 | 3.254893e-52 | -8.615850e-47 |
| Msa0363790 | Msa1024720 | 0.815906 | 7.269720e-52 | -8.615850e-47 |
| Msa0486690 | Msa1024720 | 0.803331 | 3.668956e-49 | -8.615850e-47 |
| Msa0518380 | Msa1024720 | 0.802793 | 4.739720e-49 | -8.615850e-47 |
| Msa0861090 | Msa1024720 | 0.808165 | 3.541940e-50 | -8.615850e-47 |
| Msa0880950 | Msa1024720 | 0.809495 | 1.840017e-50 | -8.615850e-47 |
| Msa0965080 | Msa1024720 | 0.806992 | 6.282975e-50 | -8.615850e-47 |
| Msa0965290 | Msa1024720 | 0.806930 | 6.474690e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024720 | MtrunA17_Chr7g0242661 | 89.250 | 400 | 9 | 2 | 1 | 366 | 1 | 400 | 0.0 | 729 |
| Msa1024720 | MtrunA17_Chr5g0406801 | 42.711 | 391 | 187 | 3 | 9 | 362 | 201 | 591 | 5.68e-110 | 333 |
| Msa1024720 | MtrunA17_Chr4g0069981 | 26.498 | 317 | 160 | 12 | 24 | 268 | 245 | 560 | 4.76e-18 | 85.9 |
| Msa1024720 | MtrunA17_Chr4g0014511 | 32.022 | 178 | 103 | 5 | 10 | 169 | 248 | 425 | 1.98e-14 | 74.7 |
| Msa1024720 | MtrunA17_Chr8g0344911 | 28.571 | 168 | 102 | 5 | 10 | 159 | 239 | 406 | 8.76e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024720 | AT3G51830.1 | 61.893 | 391 | 115 | 2 | 9 | 366 | 199 | 588 | 1.65e-177 | 506 |
| Msa1024720 | AT3G51460.1 | 43.687 | 396 | 178 | 6 | 9 | 362 | 200 | 592 | 4.11e-108 | 329 |
| Msa1024720 | AT5G66020.1 | 43.223 | 391 | 182 | 4 | 9 | 362 | 201 | 588 | 8.83e-108 | 328 |
| Msa1024720 | AT3G14205.1 | 28.358 | 335 | 159 | 12 | 10 | 268 | 225 | 554 | 9.05e-21 | 94.4 |
| Msa1024720 | AT3G14205.2 | 28.358 | 335 | 159 | 12 | 10 | 268 | 50 | 379 | 9.57e-21 | 94.4 |
| Msa1024720 | AT5G20840.1 | 25.714 | 315 | 163 | 10 | 23 | 268 | 242 | 554 | 1.31e-17 | 85.1 |
| Msa1024720 | AT3G43220.2 | 25.982 | 331 | 172 | 12 | 10 | 268 | 220 | 549 | 3.84e-14 | 74.3 |
| Msa1024720 | AT3G43220.1 | 25.982 | 331 | 172 | 12 | 10 | 268 | 220 | 549 | 5.58e-14 | 73.9 |
| Msa1024720 | AT3G43220.3 | 25.982 | 331 | 172 | 12 | 10 | 268 | 220 | 549 | 6.03e-14 | 73.9 |
| Msa1024720 | AT1G22620.1 | 30.488 | 164 | 96 | 5 | 24 | 169 | 254 | 417 | 2.61e-12 | 68.9 |
Find 132 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGATTTAATGCTTTC+TGG | 0.107883 | 7_1:+54524402 | None:intergenic |
| CCGATACTACTTACAGTTAA+AGG | 0.219294 | 7_1:+54523731 | None:intergenic |
| AAATGACGCTCCACAATATT+TGG | 0.246982 | 7_1:+54525603 | None:intergenic |
| CCCAACGAAATATAAGAAAA+AGG | 0.258105 | 7_1:+54523146 | None:intergenic |
| GCATAGACACACACACAAAA+AGG | 0.261100 | 7_1:+54526333 | None:intergenic |
| CTGTTCAGTTTCAATGAAAT+TGG | 0.264335 | 7_1:+54526016 | None:intergenic |
| ACGAAGACATCTACGATTTA+TGG | 0.278061 | 7_1:-54527839 | Msa1024720:five_prime_UTR |
| GTCGCATCAGCTTTGATAAT+TGG | 0.281742 | 7_1:-54523573 | Msa1024720:CDS |
| ACAATCTGCTCCCACAAAAT+AGG | 0.284131 | 7_1:+54525782 | None:intergenic |
| TCATGTAATTTACAACAAAA+TGG | 0.288291 | 7_1:-54528632 | None:intergenic |
| AATCTCCTAATGAAGGGTTT+TGG | 0.293674 | 7_1:-54528367 | Msa1024720:five_prime_UTR |
| CCGTTGTTTGCAGTGTTATA+TGG | 0.306301 | 7_1:-54524426 | Msa1024720:intron |
| GGAAACATTAATTTACTTGA+TGG | 0.341839 | 7_1:-54528329 | Msa1024720:intron |
| TGATTTCCATTGCCACTGTC+GGG | 0.348767 | 7_1:-54524796 | Msa1024720:CDS |
| TCAATGTTCGAAGAAGAATA+TGG | 0.353121 | 7_1:-54524341 | Msa1024720:CDS |
| TTGAAGATTTAATGCTTTCT+GGG | 0.359939 | 7_1:+54524403 | None:intergenic |
| GGGTCAGCCTGAAATATAAA+TGG | 0.368428 | 7_1:+54526585 | None:intergenic |
| CTAAACTGTCATTAATTTCA+AGG | 0.371046 | 7_1:-54526188 | Msa1024720:CDS |
| GAAGCTTAAGTCTTGGTTAA+GGG | 0.372508 | 7_1:+54526245 | None:intergenic |
| CATGATCTCTCACAAAGATA+TGG | 0.378286 | 7_1:-54525579 | Msa1024720:CDS |
| AGAAGAAGCAAGTTTGTAGA+AGG | 0.380035 | 7_1:-54527031 | Msa1024720:five_prime_UTR |
| TTAGCTTCAGCTCAGCTGTT+TGG | 0.382256 | 7_1:+54526223 | None:intergenic |
| TTTGACACTGTTGAAAATAG+TGG | 0.384611 | 7_1:-54527218 | Msa1024720:five_prime_UTR |
| TCAGCTATAAACCTCACCTT+AGG | 0.385222 | 7_1:-54525754 | Msa1024720:CDS |
| AGGAGATGTACACGGCGTTT+AGG | 0.395297 | 7_1:-54526168 | Msa1024720:intron |
| CATATCTTTGTGAGAGATCA+TGG | 0.406032 | 7_1:+54525580 | None:intergenic |
| ATGGCAATTGTCAAAGCTAA+TGG | 0.408542 | 7_1:-54523352 | Msa1024720:CDS |
| ATGCCATTGTAATAACTTCT+CGG | 0.409774 | 7_1:-54527457 | Msa1024720:five_prime_UTR |
| GGAAGCTTAAGTCTTGGTTA+AGG | 0.411264 | 7_1:+54526244 | None:intergenic |
| GGAGGAGCTTATCGAGTATA+AGG | 0.413778 | 7_1:-54526535 | Msa1024720:intron |
| ATACATACTGCTGTGCATTT+CGG | 0.419763 | 7_1:+54523410 | None:intergenic |
| CTAATCCAAAACCCTTCATT+AGG | 0.420263 | 7_1:+54528362 | None:intergenic |
| TGGTTAAGGGAAAACATAAC+AGG | 0.421213 | 7_1:+54526258 | None:intergenic |
| AATCTTCAATTGCAGAGGAT+TGG | 0.422916 | 7_1:-54524389 | Msa1024720:CDS |
| GAGTAACATTTGTTCGATCA+AGG | 0.423659 | 7_1:+54524520 | None:intergenic |
| ATCGACATCAAGCGATATAC+AGG | 0.427780 | 7_1:+54527407 | None:intergenic |
| AGGCTGACCCGCGATACGTT+TGG | 0.431707 | 7_1:-54526572 | Msa1024720:five_prime_UTR |
| TTGATTTCCATTGCCACTGT+CGG | 0.438049 | 7_1:-54524797 | Msa1024720:CDS |
| ATGTCTTATGCAGGATGCCT+TGG | 0.439416 | 7_1:-54523822 | Msa1024720:intron |
| GTATCTTCTGTACTGTGTGC+TGG | 0.441073 | 7_1:-54523391 | Msa1024720:CDS |
| CTGGGACTAATGCCCTCAAA+GGG | 0.441932 | 7_1:-54524184 | Msa1024720:CDS |
| GAAGATGAGGAACATGTAAC+AGG | 0.445175 | 7_1:-54528597 | Msa1024720:five_prime_UTR |
| TCCCTTCAATCTCCTAATGA+AGG | 0.446476 | 7_1:-54528374 | Msa1024720:five_prime_UTR |
| TTAATTACTTTGTAGGTTCG+AGG | 0.446904 | 7_1:-54525812 | Msa1024720:intron |
| AACAAGAGTTGTGAAAATCA+TGG | 0.449132 | 7_1:+54523277 | None:intergenic |
| TTCTTATATTTCGTTGGGGA+GGG | 0.450846 | 7_1:-54523141 | Msa1024720:three_prime_UTR |
| CGTTTGGAACAAACATCTTA+CGG | 0.451621 | 7_1:-54526556 | Msa1024720:five_prime_UTR |
| ATTATCAAAGCTGATGCGAC+AGG | 0.462781 | 7_1:+54523576 | None:intergenic |
| AAGGAAGTTGGAAGTTTCCT+TGG | 0.464170 | 7_1:-54527434 | Msa1024720:five_prime_UTR |
| GTCCATTTACAAAATGATTG+AGG | 0.474477 | 7_1:+54528484 | None:intergenic |
| ATAACTTCTCGGAAGGAAGT+TGG | 0.482648 | 7_1:-54527446 | Msa1024720:five_prime_UTR |
| GAAAATAGTGGAGTCAATGC+CGG | 0.486679 | 7_1:-54527206 | Msa1024720:five_prime_UTR |
| AGAAGAGGAGCTAACTTTGA+AGG | 0.487272 | 7_1:-54526047 | Msa1024720:CDS |
| TACATGTTCCTCATCTTCAA+TGG | 0.488713 | 7_1:+54528602 | None:intergenic |
| AAAATAGTGGAGTCAATGCC+GGG | 0.491746 | 7_1:-54527205 | Msa1024720:five_prime_UTR |
| ACCCTTCATTAGGAGATTGA+AGG | 0.492296 | 7_1:+54528372 | None:intergenic |
| GGAACAATAAGATTGGTTGT+AGG | 0.492648 | 7_1:-54527809 | Msa1024720:intron |
| AGGATATTCCCTTGTACTAT+CGG | 0.497695 | 7_1:+54526389 | None:intergenic |
| CCTAACTAAGTCCCCTTTGA+GGG | 0.497787 | 7_1:+54524172 | None:intergenic |
| CCCTTCATTAGGAGATTGAA+GGG | 0.497818 | 7_1:+54528373 | None:intergenic |
| AAGGTTCAAAGCTACTTCGC+TGG | 0.498114 | 7_1:+54523750 | None:intergenic |
| TTCATCATGCCGATAGTACA+AGG | 0.499850 | 7_1:-54526398 | Msa1024720:five_prime_UTR |
| GCATCAGCTTTGATAATTGG+TGG | 0.500750 | 7_1:-54523570 | Msa1024720:CDS |
| CAGCTATAAACCTCACCTTA+GGG | 0.504470 | 7_1:-54525753 | Msa1024720:CDS |
| AAGCAAGTTTGTAGAAGGGT+GGG | 0.512649 | 7_1:-54527026 | Msa1024720:five_prime_UTR |
| ATGGAAGGCAGTTCTGTTCG+AGG | 0.515558 | 7_1:-54523333 | Msa1024720:CDS |
| AAGTTGAAAACTTCAAAGCC+TGG | 0.516357 | 7_1:+54527366 | None:intergenic |
| GAAGCAAGTTTGTAGAAGGG+TGG | 0.516966 | 7_1:-54527027 | Msa1024720:five_prime_UTR |
| CAGTGGCAATGGAAATCAAA+AGG | 0.517893 | 7_1:+54524801 | None:intergenic |
| CTGTTTGGAAGCTTAAGTCT+TGG | 0.519750 | 7_1:+54526238 | None:intergenic |
| TTGTTGCAGCACGGTGAAGA+AGG | 0.519849 | 7_1:-54525007 | Msa1024720:intron |
| ACCTAACTAAGTCCCCTTTG+AGG | 0.521814 | 7_1:+54524171 | None:intergenic |
| TTTCTTATATTTCGTTGGGG+AGG | 0.522063 | 7_1:-54523142 | Msa1024720:three_prime_UTR |
| GAGAGTACTTGCGTGTAACC+AGG | 0.526307 | 7_1:-54527384 | Msa1024720:five_prime_UTR |
| GAGTAAGCCACTGTGGAAGC+AGG | 0.527146 | 7_1:-54527002 | Msa1024720:intron |
| CTGTGTGCTGGAATAACTGC+TGG | 0.531253 | 7_1:-54523379 | Msa1024720:CDS |
| GAGATAAGCCTTGAGTATGC+TGG | 0.532566 | 7_1:-54524203 | Msa1024720:CDS |
| AGATAAGCCTTGAGTATGCT+GGG | 0.536376 | 7_1:-54524202 | Msa1024720:CDS |
| TTGAGCCCCGACAGTGGCAA+TGG | 0.536524 | 7_1:+54524790 | None:intergenic |
| AGTAACATTTGTTCGATCAA+GGG | 0.541779 | 7_1:+54524521 | None:intergenic |
| TGGAATAACTGCTGGAGTCA+TGG | 0.545879 | 7_1:-54523371 | Msa1024720:CDS |
| CATTAAATCTTCAATTGCAG+AGG | 0.547181 | 7_1:-54524394 | Msa1024720:CDS |
| TGTTTGTTCCAAACGTATCG+CGG | 0.547901 | 7_1:+54526564 | None:intergenic |
| ATTTACAACAAAATGGTGGT+TGG | 0.549843 | 7_1:-54528625 | None:intergenic |
| TATGTTTCAGCCAAATATTG+TGG | 0.550858 | 7_1:-54525613 | Msa1024720:intron |
| GGAACAAGAATGTGGAGAAG+AGG | 0.551271 | 7_1:-54526062 | Msa1024720:CDS |
| CCCTTCAATCTCCTAATGAA+GGG | 0.558005 | 7_1:-54528373 | Msa1024720:five_prime_UTR |
| TTCGAACATTGAAATGCACT+CGG | 0.562178 | 7_1:+54524352 | None:intergenic |
| GTTTGTTCCAAACGTATCGC+GGG | 0.563823 | 7_1:+54526565 | None:intergenic |
| TATTTAGTGTGGGCAGAGCA+AGG | 0.569577 | 7_1:-54524230 | Msa1024720:intron |
| TGATCGAACAAATGTTACTC+AGG | 0.569718 | 7_1:-54524517 | Msa1024720:intron |
| ATCTACGATTTATGGTGTGG+TGG | 0.576053 | 7_1:-54527831 | Msa1024720:five_prime_UTR |
| CTTCCGAGAAGTTATTACAA+TGG | 0.579688 | 7_1:+54527454 | None:intergenic |
| GCTGGGACTAATGCCCTCAA+AGG | 0.581460 | 7_1:-54524185 | Msa1024720:CDS |
| GATTTCCATTGCCACTGTCG+GGG | 0.583545 | 7_1:-54524795 | Msa1024720:CDS |
| GCTCATGACTGATAACCCTA+AGG | 0.585813 | 7_1:+54525738 | None:intergenic |
| CTTTCAGAAGAATCTGAAGT+GGG | 0.586233 | 7_1:+54528455 | None:intergenic |
| CTACTTCGCTGGAAGTGAGA+AGG | 0.590353 | 7_1:+54523761 | None:intergenic |
| TGTTCGAGGCCTCGTTTGTG+CGG | 0.593814 | 7_1:-54523319 | Msa1024720:CDS |
| CATTGTAATAACTTCTCGGA+AGG | 0.599202 | 7_1:-54527453 | Msa1024720:five_prime_UTR |
| GAAGAAGCAAGTTTGTAGAA+GGG | 0.601320 | 7_1:-54527030 | Msa1024720:five_prime_UTR |
| CATTAGTCCCAGCATACTCA+AGG | 0.604748 | 7_1:+54524195 | None:intergenic |
| TCTACGATTTATGGTGTGGT+GGG | 0.605199 | 7_1:-54527830 | Msa1024720:five_prime_UTR |
| AATACCTTGCTGAAGACTGA+AGG | 0.608769 | 7_1:+54523533 | None:intergenic |
| TGTAATTTACAACAAAATGG+TGG | 0.610767 | 7_1:-54528629 | None:intergenic |
| TGTGGTGGGAACAATAAGAT+TGG | 0.612128 | 7_1:-54527816 | Msa1024720:five_prime_UTR |
| TCTTTCAGAAGAATCTGAAG+TGG | 0.616968 | 7_1:+54528454 | None:intergenic |
| GACATCTACGATTTATGGTG+TGG | 0.617695 | 7_1:-54527834 | Msa1024720:five_prime_UTR |
| CACAAGAGACCGCACAAACG+AGG | 0.622042 | 7_1:+54523310 | None:intergenic |
| GATATACTAGAAGAGCAGAA+AGG | 0.631014 | 7_1:-54524570 | Msa1024720:CDS |
| CAATTGTCAAAGCTAATGGA+AGG | 0.634217 | 7_1:-54523348 | Msa1024720:CDS |
| CGTTTGAAATTTGATCGTAG+AGG | 0.638600 | 7_1:+54524748 | None:intergenic |
| CAAAATTTGAGCCCCGACAG+TGG | 0.642463 | 7_1:+54524784 | None:intergenic |
| TTATCAAAGCTGATGCGACA+GGG | 0.647766 | 7_1:+54523577 | None:intergenic |
| GTGACCGCTTATCAGATCCA+AGG | 0.650631 | 7_1:+54523805 | None:intergenic |
| GTGGTTGGCCATTGAAGATG+AGG | 0.651722 | 7_1:-54528610 | Msa1024720:five_prime_UTR |
| TCATAAGAATAGTATAAACC+CGG | 0.654946 | 7_1:+54527187 | None:intergenic |
| GTGACACAGGAACAAGAATG+TGG | 0.655013 | 7_1:-54526070 | Msa1024720:intron |
| TAATTTCAAGGAGATGTACA+CGG | 0.664939 | 7_1:-54526176 | Msa1024720:CDS |
| AGCAGTTGATCTAACTGACA+AGG | 0.675432 | 7_1:-54525547 | Msa1024720:intron |
| ACTACCTTCAGTCTTCAGCA+AGG | 0.695354 | 7_1:-54523537 | Msa1024720:intron |
| AGCGATATACAGGAAAACCA+AGG | 0.700305 | 7_1:+54527417 | None:intergenic |
| TGACTGATAACCCTAAGGTG+AGG | 0.701261 | 7_1:+54525743 | None:intergenic |
| GATGCCTTGGATCTGATAAG+CGG | 0.703536 | 7_1:-54523809 | Msa1024720:CDS |
| TACTTCATGATAGATAACAA+AGG | 0.703872 | 7_1:-54524594 | Msa1024720:CDS |
| TCATCATGCCGATAGTACAA+GGG | 0.704888 | 7_1:-54526397 | Msa1024720:five_prime_UTR |
| TAAATCGTAGATGTCTTCGT+CGG | 0.705421 | 7_1:+54527842 | None:intergenic |
| GGTGGGTGAGTAAGCCACTG+TGG | 0.714622 | 7_1:-54527009 | Msa1024720:five_prime_UTR |
| TTGGAACAAACATCTTACGG+AGG | 0.718484 | 7_1:-54526553 | Msa1024720:five_prime_UTR |
| TCAAAGCTGATGCGACAGGG+AGG | 0.719235 | 7_1:+54523580 | None:intergenic |
| TGGGACTAATGCCCTCAAAG+GGG | 0.731713 | 7_1:-54524183 | Msa1024720:CDS |
| GTACTAACCTGCTTCCACAG+TGG | 0.768162 | 7_1:+54526995 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTATTGATATTATTTT+GGG | - | chr7_1:54523622-54523641 | Msa1024720:intron | 10.0% |
| !! | ATAAATCTGAAAAATAAATT+CGG | + | chr7_1:54526246-54526265 | None:intergenic | 10.0% |
| !! | AATAAAACATAAAAGAATAA+AGG | + | chr7_1:54526875-54526894 | None:intergenic | 10.0% |
| !!! | GTTAGTTATTGATATTATTT+TGG | - | chr7_1:54523621-54523640 | Msa1024720:intron | 15.0% |
| !!! | TTTTATTTTTCTGTAGAAAA+AGG | - | chr7_1:54524469-54524488 | Msa1024720:intron | 15.0% |
| !! | TAAAATGAAGTAATATAAGA+TGG | + | chr7_1:54524937-54524956 | None:intergenic | 15.0% |
| !!! | AAAAAATTGCTGAAAATTTT+AGG | - | chr7_1:54525105-54525124 | Msa1024720:intron | 15.0% |
| !! | AAAAAAGTAGTTTAAATATC+AGG | + | chr7_1:54525357-54525376 | None:intergenic | 15.0% |
| !! | TAAATCTGAAAAATAAATTC+GGG | + | chr7_1:54526245-54526264 | None:intergenic | 15.0% |
| !!! | TATAAAGTGTTGTTAAATAA+TGG | - | chr7_1:54526499-54526518 | Msa1024720:intron | 15.0% |
| !!! | TTTTTTCTTATACTATTCTT+GGG | - | chr7_1:54526804-54526823 | Msa1024720:intron | 15.0% |
| !!! | TCAATAATTTTATTTAGTGT+GGG | - | chr7_1:54527483-54527502 | Msa1024720:intron | 15.0% |
| !!! | ATTACATTCATCTTTTAAAA+TGG | - | chr7_1:54528059-54528078 | Msa1024720:intron | 15.0% |
| !!! | ATTTGTTGTTTTTTTATAGT+CGG | - | chr7_1:54528290-54528309 | Msa1024720:intron | 15.0% |
| !!! | GTTCTTTTTCATTTTATGAT+TGG | - | chr7_1:54523464-54523483 | Msa1024720:intron | 20.0% |
| !!! | TTTTTCATTTTATGATTGGT+GGG | - | chr7_1:54523468-54523487 | Msa1024720:intron | 20.0% |
| !!! | ATTATTTTGGGAAAGAAAAA+AGG | - | chr7_1:54523634-54523653 | Msa1024720:intron | 20.0% |
| !! | TACAGAAAAATAAAACACAA+AGG | + | chr7_1:54524464-54524483 | None:intergenic | 20.0% |
| !! | AATAATAAACCAGCAATTTA+AGG | + | chr7_1:54524594-54524613 | None:intergenic | 20.0% |
| !! | TCAATATAAAACATAAACCT+AGG | + | chr7_1:54524800-54524819 | None:intergenic | 20.0% |
| !! | ATTATGCATGAAAATAATGT+TGG | + | chr7_1:54524867-54524886 | None:intergenic | 20.0% |
| !!! | CTTTTTTCCATTTATATTTC+AGG | - | chr7_1:54525131-54525150 | Msa1024720:intron | 20.0% |
| !!! | AAAAAAATATTGGTGTTAAG+AGG | + | chr7_1:54525289-54525308 | None:intergenic | 20.0% |
| !! | AAGCTGACATAAAAAAATAT+TGG | + | chr7_1:54525299-54525318 | None:intergenic | 20.0% |
| !! | TTTATCTAACTACCATTATA+AGG | + | chr7_1:54525601-54525620 | None:intergenic | 20.0% |
| !! | CTCAATATAATATGGAAATA+TGG | - | chr7_1:54525631-54525650 | Msa1024720:intron | 20.0% |
| !!! | AAAATATTCATTGACTATCA+AGG | + | chr7_1:54525835-54525854 | None:intergenic | 20.0% |
| !! | ACTCTAATTAATTACTTTGT+AGG | - | chr7_1:54525904-54525923 | Msa1024720:intron | 20.0% |
| !!! | AAATTATGTCAAAAGCTTTT+AGG | + | chr7_1:54526046-54526065 | None:intergenic | 20.0% |
| !!! | TGATTAAGTAAAACTGATTT+TGG | - | chr7_1:54526324-54526343 | Msa1024720:five_prime_UTR | 20.0% |
| !!! | TTCAAATATTTTTCCTTCAT+AGG | - | chr7_1:54526402-54526421 | Msa1024720:five_prime_UTR | 20.0% |
| !!! | CTTTTTTCTTATACTATTCT+TGG | - | chr7_1:54526803-54526822 | Msa1024720:intron | 20.0% |
| !!! | CTCAATAATTTTATTTAGTG+TGG | - | chr7_1:54527482-54527501 | Msa1024720:intron | 20.0% |
| !! | TATCTGGATTAATTAAAGAT+GGG | - | chr7_1:54527670-54527689 | Msa1024720:intron | 20.0% |
| !! | AATGAAAGTTAATTGAAAAG+TGG | - | chr7_1:54527866-54527885 | Msa1024720:intron | 20.0% |
| !! | TTCCTCAATCATTTTGTAAA+TGG | - | chr7_1:54523237-54523256 | Msa1024720:three_prime_UTR | 25.0% |
| ! | GGAAACATTAATTTACTTGA+TGG | - | chr7_1:54523394-54523413 | Msa1024720:CDS | 25.0% |
| !!! | CTTTTTCATTTTATGATTGG+TGG | - | chr7_1:54523467-54523486 | Msa1024720:intron | 25.0% |
| !!! | AGTTGATTTGTTTTTTCAAC+TGG | - | chr7_1:54523575-54523594 | Msa1024720:CDS | 25.0% |
| !!! | TCAACTGGAAATTTTTTTTG+TGG | - | chr7_1:54523590-54523609 | Msa1024720:intron | 25.0% |
| !!! | AATTTTTTTTGTGGTGGTTT+TGG | - | chr7_1:54523599-54523618 | Msa1024720:intron | 25.0% |
| !! | TTTTTGTATTAATCGTTTGC+AGG | - | chr7_1:54523839-54523858 | Msa1024720:intron | 25.0% |
| ! | TGCATTTAAATATGCTGTTA+AGG | - | chr7_1:54524021-54524040 | Msa1024720:intron | 25.0% |
| ! | GCATTTAAATATGCTGTTAA+GGG | - | chr7_1:54524022-54524041 | Msa1024720:intron | 25.0% |
| ! | TAGATTATGTTGAATGCATT+TGG | - | chr7_1:54524100-54524119 | Msa1024720:intron | 25.0% |
| !!! | AAAGTAGTTAACTTGCTAAA+AGG | - | chr7_1:54524131-54524150 | Msa1024720:intron | 25.0% |
| ! | TCATAAGAATAGTATAAACC+CGG | + | chr7_1:54524539-54524558 | None:intergenic | 25.0% |
| ! | TGCAAAGATATGAATATCAA+GGG | + | chr7_1:54524625-54524644 | None:intergenic | 25.0% |
| ! | TTGCAAAGATATGAATATCA+AGG | + | chr7_1:54524626-54524645 | None:intergenic | 25.0% |
| !! | GTTATTTAAAATCCAATCCT+AGG | - | chr7_1:54524780-54524799 | Msa1024720:CDS | 25.0% |
| ! | ATAAAACATAAACCTAGGAT+TGG | + | chr7_1:54524795-54524814 | None:intergenic | 25.0% |
| ! | AATTAAATGCATACGAGAAA+TGG | + | chr7_1:54525015-54525034 | None:intergenic | 25.0% |
| ! | CTAAACTGTCATTAATTTCA+AGG | - | chr7_1:54525535-54525554 | Msa1024720:intron | 25.0% |
| ! | TGCAATAGCTCAATATAATA+TGG | - | chr7_1:54525623-54525642 | Msa1024720:intron | 25.0% |
| ! | ATAAACTATCAAGGAAATAC+TGG | + | chr7_1:54525802-54525821 | None:intergenic | 25.0% |
| ! | AAAATGAGGATAAACTATCA+AGG | + | chr7_1:54525811-54525830 | None:intergenic | 25.0% |
| !!! | ACTGATTTTGGTTTTCTTTT+TGG | - | chr7_1:54526336-54526355 | Msa1024720:five_prime_UTR | 25.0% |
| !! | TTTTCCATATCCAATATCTT+CGG | - | chr7_1:54526628-54526647 | Msa1024720:intron | 25.0% |
| !!! | CAAACGATTTTGAAAAACAA+AGG | - | chr7_1:54526992-54527011 | Msa1024720:intron | 25.0% |
| ! | TACTTCATGATAGATAACAA+AGG | - | chr7_1:54527129-54527148 | Msa1024720:intron | 25.0% |
| ! | AGGAAAATATCATCCATTAT+AGG | + | chr7_1:54527236-54527255 | None:intergenic | 25.0% |
| ! | TTGAAGATTTAATGCTTTCT+GGG | + | chr7_1:54527323-54527342 | None:intergenic | 25.0% |
| ! | ATTGAAGATTTAATGCTTTC+TGG | + | chr7_1:54527324-54527343 | None:intergenic | 25.0% |
| ! | CTATCTGGATTAATTAAAGA+TGG | - | chr7_1:54527669-54527688 | Msa1024720:intron | 25.0% |
| ! | TCATTTATGTATTCACTGAA+TGG | + | chr7_1:54527851-54527870 | None:intergenic | 25.0% |
| ! | TGAAGTTATCTATATTCAAG+TGG | + | chr7_1:54528040-54528059 | None:intergenic | 25.0% |
| !! | AGACTAAATTTTTAAACACG+TGG | - | chr7_1:54528536-54528555 | Msa1024720:five_prime_UTR | 25.0% |
| ! | CAACGAAATATAAGAAAAAG+GGG | + | chr7_1:54528578-54528597 | None:intergenic | 25.0% |
| ! | CCAACGAAATATAAGAAAAA+GGG | + | chr7_1:54528579-54528598 | None:intergenic | 25.0% |
| !! | CCTTTTTCTTATATTTCGTT+GGG | - | chr7_1:54528577-54528596 | Msa1024720:five_prime_UTR | 25.0% |
| !! | CTTTTTCTTATATTTCGTTG+GGG | - | chr7_1:54528578-54528597 | Msa1024720:five_prime_UTR | 25.0% |
| GTCCATTTACAAAATGATTG+AGG | + | chr7_1:54523242-54523261 | None:intergenic | 30.0% | |
| ! | ATTTTATGATTGGTGGGAAA+TGG | - | chr7_1:54523474-54523493 | Msa1024720:intron | 30.0% |
| !!! | ACTGGAAATTTTTTTTGTGG+TGG | - | chr7_1:54523593-54523612 | Msa1024720:intron | 30.0% |
| ! | CTTCTTTCGTTTTCCTATTA+AGG | - | chr7_1:54524060-54524079 | Msa1024720:intron | 30.0% |
| AGAAGAAGACTTTCCTTAAT+AGG | + | chr7_1:54524076-54524095 | None:intergenic | 30.0% | |
| ! | GCAAGTTATATTGTTAGTCT+AGG | + | chr7_1:54524200-54524219 | None:intergenic | 30.0% |
| AACTTGCATTATACTCGTTA+AGG | - | chr7_1:54524213-54524232 | Msa1024720:CDS | 30.0% | |
| ATGCCATTGTAATAACTTCT+CGG | - | chr7_1:54524266-54524285 | Msa1024720:intron | 30.0% | |
| ! | TTTTCTGTAGAAAAAGGATG+AGG | - | chr7_1:54524475-54524494 | Msa1024720:intron | 30.0% |
| TTTGACACTGTTGAAAATAG+TGG | - | chr7_1:54524505-54524524 | Msa1024720:intron | 30.0% | |
| ATGCATGAAAATAATGTTGG+TGG | + | chr7_1:54524864-54524883 | None:intergenic | 30.0% | |
| TTTCATCAAATGATGTCAAC+AGG | + | chr7_1:54525075-54525094 | None:intergenic | 30.0% | |
| TAATTTCAAGGAGATGTACA+CGG | - | chr7_1:54525547-54525566 | Msa1024720:intron | 30.0% | |
| CTGTTCAGTTTCAATGAAAT+TGG | + | chr7_1:54525710-54525729 | None:intergenic | 30.0% | |
| !! | ATTCAAGTTCTCATTTTTGC+AGG | - | chr7_1:54525747-54525766 | Msa1024720:CDS | 30.0% |
| GGAAATACTGGAATTAAGTA+CGG | + | chr7_1:54525790-54525809 | None:intergenic | 30.0% | |
| TTGACTATCAAGGAAAAATG+AGG | + | chr7_1:54525825-54525844 | None:intergenic | 30.0% | |
| TAGAGTACAAATCACTAACA+GGG | + | chr7_1:54525890-54525909 | None:intergenic | 30.0% | |
| TTAGAGTACAAATCACTAAC+AGG | + | chr7_1:54525891-54525910 | None:intergenic | 30.0% | |
| TTAATTACTTTGTAGGTTCG+AGG | - | chr7_1:54525911-54525930 | Msa1024720:intron | 30.0% | |
| CAATATTTGGCTGAAACATA+AGG | + | chr7_1:54526110-54526129 | None:intergenic | 30.0% | |
| TATGTTTCAGCCAAATATTG+TGG | - | chr7_1:54526110-54526129 | Msa1024720:intron | 30.0% | |
| AAGAAGATGCTACATATCTT+TGG | + | chr7_1:54526276-54526295 | None:intergenic | 30.0% | |
| AACAAATCGTTATTGTTCTG+TGG | - | chr7_1:54526464-54526483 | Msa1024720:intron | 30.0% | |
| AACACAATCATATATCCTAC+AGG | + | chr7_1:54526604-54526623 | None:intergenic | 30.0% | |
| AGACAGTTGAAACAGAAAAT+TGG | + | chr7_1:54526654-54526673 | None:intergenic | 30.0% | |
| GCAACAAAAGTAGAATTAAC+AGG | + | chr7_1:54526703-54526722 | None:intergenic | 30.0% | |
| AGTAACATTTGTTCGATCAA+GGG | + | chr7_1:54527205-54527224 | None:intergenic | 30.0% | |
| CATTAAATCTTCAATTGCAG+AGG | - | chr7_1:54527329-54527348 | Msa1024720:intron | 30.0% | |
| TCAATGTTCGAAGAAGAATA+TGG | - | chr7_1:54527382-54527401 | Msa1024720:five_prime_UTR | 30.0% | |
| TTATTGAGCTCAAATAAGCA+GGG | + | chr7_1:54527470-54527489 | None:intergenic | 30.0% | |
| ATTATTGAGCTCAAATAAGC+AGG | + | chr7_1:54527471-54527490 | None:intergenic | 30.0% | |
| AAATTCATCAGTATCACAGA+TGG | + | chr7_1:54527617-54527636 | None:intergenic | 30.0% | |
| ! | TCTGTGATACTGATGAATTT+TGG | - | chr7_1:54527617-54527636 | Msa1024720:intron | 30.0% |
| TATGGAAAAAAGACACTATC+TGG | - | chr7_1:54527654-54527673 | Msa1024720:intron | 30.0% | |
| TACTTGAATAACTTCCATGA+TGG | - | chr7_1:54527714-54527733 | Msa1024720:intron | 30.0% | |
| ACTTGAATAACTTCCATGAT+GGG | - | chr7_1:54527715-54527734 | Msa1024720:intron | 30.0% | |
| ATAAGTTTCATGTCTTATGC+AGG | - | chr7_1:54527892-54527911 | Msa1024720:intron | 30.0% | |
| CCTTTAACTGTAAGTAGTAT+CGG | - | chr7_1:54527992-54528011 | Msa1024720:intron | 30.0% | |
| TGGTAGACAATAGAGATATT+AGG | + | chr7_1:54528020-54528039 | None:intergenic | 30.0% | |
| TGTTTCTTCCATCTGAATAA+AGG | - | chr7_1:54528221-54528240 | Msa1024720:intron | 30.0% | |
| TCAAAGATCCTTTATTCAGA+TGG | + | chr7_1:54528232-54528251 | None:intergenic | 30.0% | |
| AACAAGAGTTGTGAAAATCA+TGG | + | chr7_1:54528449-54528468 | None:intergenic | 30.0% | |
| ! | CCCTTTTTCTTATATTTCGT+TGG | - | chr7_1:54528576-54528595 | Msa1024720:five_prime_UTR | 30.0% |
| CCCAACGAAATATAAGAAAA+AGG | + | chr7_1:54528580-54528599 | None:intergenic | 30.0% | |
| TACATGTTCCTCATCTTCAA+TGG | + | chr7_1:54523124-54523143 | None:intergenic | 35.0% | |
| ! | CTTTCAGAAGAATCTGAAGT+GGG | + | chr7_1:54523271-54523290 | None:intergenic | 35.0% |
| TCTTTCAGAAGAATCTGAAG+TGG | + | chr7_1:54523272-54523291 | None:intergenic | 35.0% | |
| ! | AATCTCCTAATGAAGGGTTT+TGG | - | chr7_1:54523356-54523375 | Msa1024720:CDS | 35.0% |
| CTAATCCAAAACCCTTCATT+AGG | + | chr7_1:54523364-54523383 | None:intergenic | 35.0% | |
| !!! | TTTTGGATTAGTCGTGTTGA+TGG | - | chr7_1:54523373-54523392 | Msa1024720:CDS | 35.0% |
| GTTTATTACATCCTGCTGTT+TGG | - | chr7_1:54523734-54523753 | Msa1024720:intron | 35.0% | |
| TAAATCGTAGATGTCTTCGT+CGG | + | chr7_1:54523884-54523903 | None:intergenic | 35.0% | |
| ACGAAGACATCTACGATTTA+TGG | - | chr7_1:54523884-54523903 | Msa1024720:intron | 35.0% | |
| ! | GGAACAATAAGATTGGTTGT+AGG | - | chr7_1:54523914-54523933 | Msa1024720:intron | 35.0% |
| CAATGATGCTATCTTGATAC+AGG | - | chr7_1:54524238-54524257 | Msa1024720:intron | 35.0% | |
| CTTCCGAGAAGTTATTACAA+TGG | + | chr7_1:54524272-54524291 | None:intergenic | 35.0% | |
| CATTGTAATAACTTCTCGGA+AGG | - | chr7_1:54524270-54524289 | Msa1024720:intron | 35.0% | |
| AAGTTGAAAACTTCAAAGCC+TGG | + | chr7_1:54524360-54524379 | None:intergenic | 35.0% | |
| TCAACTTCTCAAGAAGTAAG+AGG | - | chr7_1:54524373-54524392 | Msa1024720:CDS | 35.0% | |
| TGTATCAGTCCTTAAATTGC+TGG | - | chr7_1:54524582-54524601 | Msa1024720:CDS | 35.0% | |
| AGAAGAAGCAAGTTTGTAGA+AGG | - | chr7_1:54524692-54524711 | Msa1024720:intron | 35.0% | |
| GAAGAAGCAAGTTTGTAGAA+GGG | - | chr7_1:54524693-54524712 | Msa1024720:intron | 35.0% | |
| GAATAGACAAGACCAAAGAA+AGG | - | chr7_1:54525039-54525058 | Msa1024720:intron | 35.0% | |
| ! | CGTTTGGAACAAACATCTTA+CGG | - | chr7_1:54525167-54525186 | Msa1024720:intron | 35.0% |
| AGGATATTCCCTTGTACTAT+CGG | + | chr7_1:54525337-54525356 | None:intergenic | 35.0% | |
| ATAGACACACACACAAAAAG+GGG | + | chr7_1:54525391-54525410 | None:intergenic | 35.0% | |
| CATAGACACACACACAAAAA+GGG | + | chr7_1:54525392-54525411 | None:intergenic | 35.0% | |
| TGGTTAAGGGAAAACATAAC+AGG | + | chr7_1:54525468-54525487 | None:intergenic | 35.0% | |
| GAAGCTTAAGTCTTGGTTAA+GGG | + | chr7_1:54525481-54525500 | None:intergenic | 35.0% | |
| !! | CCATTATAAGGAAGCATCTT+TGG | + | chr7_1:54525589-54525608 | None:intergenic | 35.0% |
| CCAAAGATGCTTCCTTATAA+TGG | - | chr7_1:54525586-54525605 | Msa1024720:CDS | 35.0% | |
| ATATGGAAATATGGTGACAC+AGG | - | chr7_1:54525640-54525659 | Msa1024720:intron | 35.0% | |
| ! | AGGTTCGATTCCTATTTTGT+GGG | - | chr7_1:54525931-54525950 | Msa1024720:intron | 35.0% |
| TGAAACATAAGGAGTAGAGT+GGG | + | chr7_1:54526099-54526118 | None:intergenic | 35.0% | |
| AAATGACGCTCCACAATATT+TGG | + | chr7_1:54526123-54526142 | None:intergenic | 35.0% | |
| CATATCTTTGTGAGAGATCA+TGG | + | chr7_1:54526146-54526165 | None:intergenic | 35.0% | |
| CATGATCTCTCACAAAGATA+TGG | - | chr7_1:54526144-54526163 | Msa1024720:intron | 35.0% | |
| ! | GCATCTTCTTGATGTTTTCT+AGG | - | chr7_1:54526286-54526305 | Msa1024720:five_prime_UTR | 35.0% |
| ! | TCTTCTTGATGTTTTCTAGG+AGG | - | chr7_1:54526289-54526308 | Msa1024720:five_prime_UTR | 35.0% |
| TTTGACAACACTTCCTATGA+AGG | + | chr7_1:54526418-54526437 | None:intergenic | 35.0% | |
| !! | TAGGAAGTGTTGTCAAATAG+CGG | - | chr7_1:54526421-54526440 | Msa1024720:intron | 35.0% |
| AAATAGCGGTTATAGCATAG+AGG | - | chr7_1:54526435-54526454 | Msa1024720:intron | 35.0% | |
| TTGTTCTGTGGTACACTATT+TGG | - | chr7_1:54526476-54526495 | Msa1024720:intron | 35.0% | |
| AATCATATATCCTACAGGCA+GGG | + | chr7_1:54526599-54526618 | None:intergenic | 35.0% | |
| AGAAAATTGGCCGAAGATAT+TGG | + | chr7_1:54526641-54526660 | None:intergenic | 35.0% | |
| !! | ATTCTACTTTTGTTGCAGCA+CGG | - | chr7_1:54526707-54526726 | Msa1024720:intron | 35.0% |
| AAACTTAAGACCTTGTGCTA+TGG | - | chr7_1:54526831-54526850 | Msa1024720:intron | 35.0% | |
| ! | CGTTTGAAATTTGATCGTAG+AGG | + | chr7_1:54526978-54526997 | None:intergenic | 35.0% |
| TTGCTACAATACAGATATGC+TGG | - | chr7_1:54527059-54527078 | Msa1024720:intron | 35.0% | |
| GATATACTAGAAGAGCAGAA+AGG | - | chr7_1:54527153-54527172 | Msa1024720:intron | 35.0% | |
| GAGTAACATTTGTTCGATCA+AGG | + | chr7_1:54527206-54527225 | None:intergenic | 35.0% | |
| TGATCGAACAAATGTTACTC+AGG | - | chr7_1:54527206-54527225 | Msa1024720:five_prime_UTR | 35.0% | |
| CCATATAACACTGCAAACAA+CGG | + | chr7_1:54527300-54527319 | None:intergenic | 35.0% | |
| AATCTTCAATTGCAGAGGAT+TGG | - | chr7_1:54527334-54527353 | Msa1024720:intron | 35.0% | |
| TTCGAACATTGAAATGCACT+CGG | + | chr7_1:54527374-54527393 | None:intergenic | 35.0% | |
| TTGGATTTGTGATGCAGATA+TGG | - | chr7_1:54527636-54527655 | Msa1024720:intron | 35.0% | |
| ! | ATAACTTCCATGATGGGATT+CGG | - | chr7_1:54527721-54527740 | Msa1024720:intron | 35.0% |
| CCGATACTACTTACAGTTAA+AGG | + | chr7_1:54527995-54528014 | None:intergenic | 35.0% | |
| ATACATACTGCTGTGCATTT+CGG | + | chr7_1:54528316-54528335 | None:intergenic | 35.0% | |
| ATGGCAATTGTCAAAGCTAA+TGG | - | chr7_1:54528371-54528390 | Msa1024720:five_prime_UTR | 35.0% | |
| CAATTGTCAAAGCTAATGGA+AGG | - | chr7_1:54528375-54528394 | Msa1024720:five_prime_UTR | 35.0% | |
| TTTCTTATATTTCGTTGGGG+AGG | - | chr7_1:54528581-54528600 | Msa1024720:five_prime_UTR | 35.0% | |
| TTCTTATATTTCGTTGGGGA+GGG | - | chr7_1:54528582-54528601 | Msa1024720:five_prime_UTR | 35.0% | |
| GAAGATGAGGAACATGTAAC+AGG | - | chr7_1:54523126-54523145 | Msa1024720:three_prime_UTR | 40.0% | |
| TCCCTTCAATCTCCTAATGA+AGG | - | chr7_1:54523349-54523368 | Msa1024720:CDS | 40.0% | |
| CCCTTCATTAGGAGATTGAA+GGG | + | chr7_1:54523353-54523372 | None:intergenic | 40.0% | |
| CCCTTCAATCTCCTAATGAA+GGG | - | chr7_1:54523350-54523369 | Msa1024720:CDS | 40.0% | |
| ACCCTTCATTAGGAGATTGA+AGG | + | chr7_1:54523354-54523373 | None:intergenic | 40.0% | |
| GACATCTACGATTTATGGTG+TGG | - | chr7_1:54523889-54523908 | Msa1024720:intron | 40.0% | |
| ATCTACGATTTATGGTGTGG+TGG | - | chr7_1:54523892-54523911 | Msa1024720:intron | 40.0% | |
| TCTACGATTTATGGTGTGGT+GGG | - | chr7_1:54523893-54523912 | Msa1024720:intron | 40.0% | |
| ! | TGTGGTGGGAACAATAAGAT+TGG | - | chr7_1:54523907-54523926 | Msa1024720:intron | 40.0% |
| ATAACTTCTCGGAAGGAAGT+TGG | - | chr7_1:54524277-54524296 | Msa1024720:intron | 40.0% | |
| AAGGAAGTTGGAAGTTTCCT+TGG | - | chr7_1:54524289-54524308 | Msa1024720:intron | 40.0% | |
| AGCGATATACAGGAAAACCA+AGG | + | chr7_1:54524309-54524328 | None:intergenic | 40.0% | |
| ATCGACATCAAGCGATATAC+AGG | + | chr7_1:54524319-54524338 | None:intergenic | 40.0% | |
| ! | GAAAATAGTGGAGTCAATGC+CGG | - | chr7_1:54524517-54524536 | Msa1024720:intron | 40.0% |
| ! | AAAATAGTGGAGTCAATGCC+GGG | - | chr7_1:54524518-54524537 | Msa1024720:CDS | 40.0% |
| AAGCAAGTTTGTAGAAGGGT+GGG | - | chr7_1:54524697-54524716 | Msa1024720:intron | 40.0% | |
| GACACTTCACATTGACATCA+TGG | + | chr7_1:54524973-54524992 | None:intergenic | 40.0% | |
| TGATGTCAACAGGTTCAAGA+GGG | + | chr7_1:54525065-54525084 | None:intergenic | 40.0% | |
| ATGATGTCAACAGGTTCAAG+AGG | + | chr7_1:54525066-54525085 | None:intergenic | 40.0% | |
| GGGTCAGCCTGAAATATAAA+TGG | + | chr7_1:54525141-54525160 | None:intergenic | 40.0% | |
| TGTTTGTTCCAAACGTATCG+CGG | + | chr7_1:54525162-54525181 | None:intergenic | 40.0% | |
| TTGGAACAAACATCTTACGG+AGG | - | chr7_1:54525170-54525189 | Msa1024720:intron | 40.0% | |
| TTCATCATGCCGATAGTACA+AGG | - | chr7_1:54525325-54525344 | Msa1024720:intron | 40.0% | |
| TCATCATGCCGATAGTACAA+GGG | - | chr7_1:54525326-54525345 | Msa1024720:intron | 40.0% | |
| GCATAGACACACACACAAAA+AGG | + | chr7_1:54525393-54525412 | None:intergenic | 40.0% | |
| GGAAGCTTAAGTCTTGGTTA+AGG | + | chr7_1:54525482-54525501 | None:intergenic | 40.0% | |
| CTGTTTGGAAGCTTAAGTCT+TGG | + | chr7_1:54525488-54525507 | None:intergenic | 40.0% | |
| AGAAGAGGAGCTAACTTTGA+AGG | - | chr7_1:54525676-54525695 | Msa1024720:intron | 40.0% | |
| ! | GAGGTTCGATTCCTATTTTG+TGG | - | chr7_1:54525930-54525949 | Msa1024720:intron | 40.0% |
| ACAATCTGCTCCCACAAAAT+AGG | + | chr7_1:54525944-54525963 | None:intergenic | 40.0% | |
| TCAGCTATAAACCTCACCTT+AGG | - | chr7_1:54525969-54525988 | Msa1024720:intron | 40.0% | |
| CAGCTATAAACCTCACCTTA+GGG | - | chr7_1:54525970-54525989 | Msa1024720:intron | 40.0% | |
| !! | CTTCTAGTTCTCGATTCTTC+TGG | - | chr7_1:54526018-54526037 | Msa1024720:CDS | 40.0% |
| CTGAAACATAAGGAGTAGAG+TGG | + | chr7_1:54526100-54526119 | None:intergenic | 40.0% | |
| AGCAGTTGATCTAACTGACA+AGG | - | chr7_1:54526176-54526195 | Msa1024720:CDS | 40.0% | |
| CAATCATATATCCTACAGGC+AGG | + | chr7_1:54526600-54526619 | None:intergenic | 40.0% | |
| TTGGCCGAAGATATTGGATA+TGG | + | chr7_1:54526635-54526654 | None:intergenic | 40.0% | |
| TGAAAAATCAGCAAAGTGCG+AGG | - | chr7_1:54526768-54526787 | Msa1024720:intron | 40.0% | |
| !! | TTTATTGACTCACGACGCTA+TGG | - | chr7_1:54526889-54526908 | Msa1024720:intron | 40.0% |
| CAGTGGCAATGGAAATCAAA+AGG | + | chr7_1:54526925-54526944 | None:intergenic | 40.0% | |
| TTGATTTCCATTGCCACTGT+CGG | - | chr7_1:54526926-54526945 | Msa1024720:intron | 40.0% | |
| TTACTCAGGTTCGCCTATAA+TGG | - | chr7_1:54527220-54527239 | Msa1024720:five_prime_UTR | 40.0% | |
| TAAGTAGCTGCATAACTTCC+AGG | + | chr7_1:54527263-54527282 | None:intergenic | 40.0% | |
| CCGTTGTTTGCAGTGTTATA+TGG | - | chr7_1:54527297-54527316 | Msa1024720:intron | 40.0% | |
| AGATAAGCCTTGAGTATGCT+GGG | - | chr7_1:54527521-54527540 | Msa1024720:intron | 40.0% | |
| TTATCAAAGCTGATGCGACA+GGG | + | chr7_1:54528149-54528168 | None:intergenic | 40.0% | |
| ATTATCAAAGCTGATGCGAC+AGG | + | chr7_1:54528150-54528169 | None:intergenic | 40.0% | |
| ! | GTCGCATCAGCTTTGATAAT+TGG | - | chr7_1:54528150-54528169 | Msa1024720:intron | 40.0% |
| ! | GCATCAGCTTTGATAATTGG+TGG | - | chr7_1:54528153-54528172 | Msa1024720:intron | 40.0% |
| AATACCTTGCTGAAGACTGA+AGG | + | chr7_1:54528193-54528212 | None:intergenic | 40.0% | |
| CTGTTTGGTCTGTACTTGGT+TGG | - | chr7_1:54523749-54523768 | Msa1024720:CDS | 45.0% | |
| GAAGCAAGTTTGTAGAAGGG+TGG | - | chr7_1:54524696-54524715 | Msa1024720:intron | 45.0% | |
| GTTTGTTCCAAACGTATCGC+GGG | + | chr7_1:54525161-54525180 | None:intergenic | 45.0% | |
| GGAGGAGCTTATCGAGTATA+AGG | - | chr7_1:54525188-54525207 | Msa1024720:intron | 45.0% | |
| ACACACACACAAAAAGGGGA+CGG | + | chr7_1:54525387-54525406 | None:intergenic | 45.0% | |
| TTAGCTTCAGCTCAGCTGTT+TGG | + | chr7_1:54525503-54525522 | None:intergenic | 45.0% | |
| GTGACACAGGAACAAGAATG+TGG | - | chr7_1:54525653-54525672 | Msa1024720:intron | 45.0% | |
| GGAACAAGAATGTGGAGAAG+AGG | - | chr7_1:54525661-54525680 | Msa1024720:intron | 45.0% | |
| TGACTGATAACCCTAAGGTG+AGG | + | chr7_1:54525983-54526002 | None:intergenic | 45.0% | |
| GCTCATGACTGATAACCCTA+AGG | + | chr7_1:54525988-54526007 | None:intergenic | 45.0% | |
| ! | ACAAACAGCTCGCTGCTTTA+GGG | - | chr7_1:54526361-54526380 | Msa1024720:five_prime_UTR | 45.0% |
| AAAGCAGACTCCATAGCACA+AGG | + | chr7_1:54526844-54526863 | None:intergenic | 45.0% | |
| TGATTTCCATTGCCACTGTC+GGG | - | chr7_1:54526927-54526946 | Msa1024720:intron | 45.0% | |
| ! | GATGATATTTTCCTCCAGCC+TGG | - | chr7_1:54527242-54527261 | Msa1024720:intron | 45.0% |
| TATTTAGTGTGGGCAGAGCA+AGG | - | chr7_1:54527493-54527512 | Msa1024720:intron | 45.0% | |
| GAGATAAGCCTTGAGTATGC+TGG | - | chr7_1:54527520-54527539 | Msa1024720:intron | 45.0% | |
| CATTAGTCCCAGCATACTCA+AGG | + | chr7_1:54527531-54527550 | None:intergenic | 45.0% | |
| CCTAACTAAGTCCCCTTTGA+GGG | + | chr7_1:54527554-54527573 | None:intergenic | 45.0% | |
| ACCTAACTAAGTCCCCTTTG+AGG | + | chr7_1:54527555-54527574 | None:intergenic | 45.0% | |
| ATGTCTTATGCAGGATGCCT+TGG | - | chr7_1:54527901-54527920 | Msa1024720:intron | 45.0% | |
| GATGCCTTGGATCTGATAAG+CGG | - | chr7_1:54527914-54527933 | Msa1024720:intron | 45.0% | |
| AAGGTTCAAAGCTACTTCGC+TGG | + | chr7_1:54527976-54527995 | None:intergenic | 45.0% | |
| ACTACCTTCAGTCTTCAGCA+AGG | - | chr7_1:54528186-54528205 | Msa1024720:intron | 45.0% | |
| GTATCTTCTGTACTGTGTGC+TGG | - | chr7_1:54528332-54528351 | Msa1024720:five_prime_UTR | 45.0% | |
| TGGAATAACTGCTGGAGTCA+TGG | - | chr7_1:54528352-54528371 | Msa1024720:five_prime_UTR | 45.0% | |
| ! | GTGGTTGGCCATTGAAGATG+AGG | - | chr7_1:54523113-54523132 | Msa1024720:three_prime_UTR | 50.0% |
| CCAAGTACAGACCAAACAGC+AGG | + | chr7_1:54523748-54523767 | None:intergenic | 50.0% | |
| ! | CCTGCTGTTTGGTCTGTACT+TGG | - | chr7_1:54523745-54523764 | Msa1024720:CDS | 50.0% |
| !! | GAGAGTACTTGCGTGTAACC+AGG | - | chr7_1:54524339-54524358 | Msa1024720:CDS | 50.0% |
| CTTGCTTCTTCTCTGCAAGC+TGG | + | chr7_1:54524684-54524703 | None:intergenic | 50.0% | |
| GTACTAACCTGCTTCCACAG+TGG | + | chr7_1:54524731-54524750 | None:intergenic | 50.0% | |
| GGTTCAAGAGGGCCTTTCTT+TGG | + | chr7_1:54525054-54525073 | None:intergenic | 50.0% | |
| ACACACACAAAAAGGGGACG+GGG | + | chr7_1:54525385-54525404 | None:intergenic | 50.0% | |
| CACACACACAAAAAGGGGAC+GGG | + | chr7_1:54525386-54525405 | None:intergenic | 50.0% | |
| AGGAGATGTACACGGCGTTT+AGG | - | chr7_1:54525555-54525574 | Msa1024720:CDS | 50.0% | |
| CTAAAGCAGCGAGCTGTTTG+TGG | + | chr7_1:54526362-54526381 | None:intergenic | 50.0% | |
| ! | CACAAACAGCTCGCTGCTTT+AGG | - | chr7_1:54526360-54526379 | Msa1024720:five_prime_UTR | 50.0% |
| AGGGTTGTCAATTGCAGGTG+CGG | + | chr7_1:54526580-54526599 | None:intergenic | 50.0% | |
| CAATTGACAACCCTGCCTGT+AGG | - | chr7_1:54526586-54526605 | Msa1024720:five_prime_UTR | 50.0% | |
| TTGTTGCAGCACGGTGAAGA+AGG | - | chr7_1:54526716-54526735 | Msa1024720:intron | 50.0% | |
| GATTTCCATTGCCACTGTCG+GGG | - | chr7_1:54526928-54526947 | Msa1024720:intron | 50.0% | |
| CAAAATTTGAGCCCCGACAG+TGG | + | chr7_1:54526942-54526961 | None:intergenic | 50.0% | |
| TAGCTGCATAACTTCCAGGC+TGG | + | chr7_1:54527259-54527278 | None:intergenic | 50.0% | |
| CTGGGACTAATGCCCTCAAA+GGG | - | chr7_1:54527539-54527558 | Msa1024720:intron | 50.0% | |
| TGGGACTAATGCCCTCAAAG+GGG | - | chr7_1:54527540-54527559 | Msa1024720:intron | 50.0% | |
| CCCTCAAAGGGGACTTAGTT+AGG | - | chr7_1:54527551-54527570 | Msa1024720:intron | 50.0% | |
| GTGACCGCTTATCAGATCCA+AGG | + | chr7_1:54527921-54527940 | None:intergenic | 50.0% | |
| CTACTTCGCTGGAAGTGAGA+AGG | + | chr7_1:54527965-54527984 | None:intergenic | 50.0% | |
| CTGTGTGCTGGAATAACTGC+TGG | - | chr7_1:54528344-54528363 | Msa1024720:five_prime_UTR | 50.0% | |
| ATGGAAGGCAGTTCTGTTCG+AGG | - | chr7_1:54528390-54528409 | Msa1024720:five_prime_UTR | 50.0% | |
| GAGTAAGCCACTGTGGAAGC+AGG | - | chr7_1:54524721-54524740 | Msa1024720:intron | 55.0% | |
| CACACACAAAAAGGGGACGG+GGG | + | chr7_1:54525384-54525403 | None:intergenic | 55.0% | |
| CAGGCAGGGTTGTCAATTGC+AGG | + | chr7_1:54526585-54526604 | None:intergenic | 55.0% | |
| CTGCATAACTTCCAGGCTGG+AGG | + | chr7_1:54527256-54527275 | None:intergenic | 55.0% | |
| GCTGGGACTAATGCCCTCAA+AGG | - | chr7_1:54527538-54527557 | Msa1024720:intron | 55.0% | |
| ! | CTTCCATGATGGGATTCGGC+AGG | - | chr7_1:54527725-54527744 | Msa1024720:intron | 55.0% |
| TTGCCTGCCGAATCCCATCA+TGG | + | chr7_1:54527731-54527750 | None:intergenic | 55.0% | |
| TCAAAGCTGATGCGACAGGG+AGG | + | chr7_1:54528146-54528165 | None:intergenic | 55.0% | |
| TGTTCGAGGCCTCGTTTGTG+CGG | - | chr7_1:54528404-54528423 | Msa1024720:five_prime_UTR | 55.0% | |
| CACAAGAGACCGCACAAACG+AGG | + | chr7_1:54528416-54528435 | None:intergenic | 55.0% | |
| GGTGGGTGAGTAAGCCACTG+TGG | - | chr7_1:54524714-54524733 | Msa1024720:intron | 60.0% | |
| AGGCTGACCCGCGATACGTT+TGG | - | chr7_1:54525151-54525170 | Msa1024720:intron | 60.0% | |
| TTGAGCCCCGACAGTGGCAA+TGG | + | chr7_1:54526936-54526955 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 54523105 | 54528640 | 54523105 | ID=Msa1024720;Name=Msa1024720 |
| chr7_1 | mRNA | 54523105 | 54528640 | 54523105 | ID=Msa1024720-mRNA-1;Parent=Msa1024720;Name=Msa1024720-mRNA-1;_AED=0.15;_eAED=0.15;_QI=902|0.94|0.94|1|0.82|0.83|18|204|366 |
| chr7_1 | exon | 54523105 | 54523436 | 54523105 | ID=Msa1024720-mRNA-1:exon:10864;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54523538 | 54523604 | 54523538 | ID=Msa1024720-mRNA-1:exon:10863;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54523745 | 54523831 | 54523745 | ID=Msa1024720-mRNA-1:exon:10862;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54524178 | 54524245 | 54524178 | ID=Msa1024720-mRNA-1:exon:10861;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54524327 | 54524435 | 54524327 | ID=Msa1024720-mRNA-1:exon:10860;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54524518 | 54524617 | 54524518 | ID=Msa1024720-mRNA-1:exon:10859;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54524732 | 54524830 | 54524732 | ID=Msa1024720-mRNA-1:exon:10858;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54524956 | 54525020 | 54524956 | ID=Msa1024720-mRNA-1:exon:10857;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54525548 | 54525625 | 54525548 | ID=Msa1024720-mRNA-1:exon:10856;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54525733 | 54525819 | 54525733 | ID=Msa1024720-mRNA-1:exon:10855;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54525977 | 54526083 | 54525977 | ID=Msa1024720-mRNA-1:exon:10854;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54526169 | 54526429 | 54526169 | ID=Msa1024720-mRNA-1:exon:10853;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54526536 | 54526618 | 54526536 | ID=Msa1024720-mRNA-1:exon:10852;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54527003 | 54527060 | 54527003 | ID=Msa1024720-mRNA-1:exon:10851;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54527169 | 54527260 | 54527169 | ID=Msa1024720-mRNA-1:exon:10850;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54527358 | 54527485 | 54527358 | ID=Msa1024720-mRNA-1:exon:10849;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54527810 | 54527884 | 54527810 | ID=Msa1024720-mRNA-1:exon:10848;Parent=Msa1024720-mRNA-1 |
| chr7_1 | exon | 54528330 | 54528640 | 54528330 | ID=Msa1024720-mRNA-1:exon:10847;Parent=Msa1024720-mRNA-1 |
| chr7_1 | five_prime_UTR | 54528330 | 54528640 | 54528330 | ID=Msa1024720-mRNA-1:five_prime_utr;Parent=Msa1024720-mRNA-1 |
| chr7_1 | five_prime_UTR | 54527810 | 54527884 | 54527810 | ID=Msa1024720-mRNA-1:five_prime_utr;Parent=Msa1024720-mRNA-1 |
| chr7_1 | five_prime_UTR | 54527358 | 54527485 | 54527358 | ID=Msa1024720-mRNA-1:five_prime_utr;Parent=Msa1024720-mRNA-1 |
| chr7_1 | five_prime_UTR | 54527169 | 54527260 | 54527169 | ID=Msa1024720-mRNA-1:five_prime_utr;Parent=Msa1024720-mRNA-1 |
| chr7_1 | five_prime_UTR | 54527003 | 54527060 | 54527003 | ID=Msa1024720-mRNA-1:five_prime_utr;Parent=Msa1024720-mRNA-1 |
| chr7_1 | five_prime_UTR | 54526536 | 54526618 | 54526536 | ID=Msa1024720-mRNA-1:five_prime_utr;Parent=Msa1024720-mRNA-1 |
| chr7_1 | five_prime_UTR | 54526275 | 54526429 | 54526275 | ID=Msa1024720-mRNA-1:five_prime_utr;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54526169 | 54526274 | 54526169 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54525977 | 54526083 | 54525977 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54525733 | 54525819 | 54525733 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54525548 | 54525625 | 54525548 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54524956 | 54525020 | 54524956 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54524732 | 54524830 | 54524732 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54524518 | 54524617 | 54524518 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54524327 | 54524435 | 54524327 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54524178 | 54524245 | 54524178 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54523745 | 54523831 | 54523745 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54523538 | 54523604 | 54523538 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | CDS | 54523309 | 54523436 | 54523309 | ID=Msa1024720-mRNA-1:cds;Parent=Msa1024720-mRNA-1 |
| chr7_1 | three_prime_UTR | 54523105 | 54523308 | 54523105 | ID=Msa1024720-mRNA-1:three_prime_utr;Parent=Msa1024720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
