AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1277690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277690 MtrunA17_Chr8g0346501 99.057 106 1 0 1 106 1 106 7.85e-77 221
Msa1277690 MtrunA17_Chr3g0127211 68.571 105 33 0 1 105 1 105 4.49e-51 156
Msa1277690 MtrunA17_Chr1g0188931 64.706 102 36 0 1 102 1 102 3.06e-48 149
Msa1277690 MtrunA17_Chr5g0436971 49.495 99 50 0 8 106 12 110 5.29e-33 111
Msa1277690 MtrunA17_Chr3g0113291 51.064 94 46 0 8 101 35 128 9.12e-33 111
Msa1277690 MtrunA17_Chr4g0046851 49.000 100 50 1 3 102 8 106 2.61e-30 104
Msa1277690 MtrunA17_Chr7g0242231 47.423 97 51 0 10 106 14 110 1.80e-29 102
Msa1277690 MtrunA17_Chr2g0316921 47.368 95 50 0 8 102 12 106 2.63e-28 99.8
Msa1277690 MtrunA17_Chr8g0360291 43.158 95 54 0 8 102 12 106 6.54e-26 93.6
Msa1277690 MtrunA17_Chr1g0188951 66.129 62 21 0 44 105 1 62 1.12e-22 83.6
Msa1277690 MtrunA17_Chr2g0316891 49.206 63 32 0 40 102 42 104 5.01e-18 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277690 AT4G27745.2 66.667 102 34 0 1 102 1 102 1.59e-47 147
Msa1277690 AT4G27745.3 66.667 102 34 0 1 102 1 102 1.59e-47 147
Msa1277690 AT4G27745.1 66.667 102 34 0 1 102 1 102 1.59e-47 147
Msa1277690 AT4G27745.4 66.667 102 34 0 1 102 1 102 1.59e-47 147
Msa1277690 AT3G11230.1 51.515 99 48 0 8 106 12 110 5.12e-35 117
Msa1277690 AT3G11230.2 53.191 94 44 0 8 101 45 138 1.62e-34 116
Msa1277690 AT3G11230.4 53.261 92 43 0 8 99 12 103 7.10e-34 113
Msa1277690 AT3G11230.3 53.846 91 42 0 8 98 45 135 1.85e-33 113
Msa1277690 AT4G27740.1 51.064 94 46 0 9 102 9 102 3.52e-33 111
Msa1277690 AT3G55890.4 51.485 101 48 1 1 101 6 105 1.17e-32 110
Msa1277690 AT3G55890.1 51.485 101 48 1 1 101 6 105 1.17e-32 110
Msa1277690 AT5G53940.1 49.474 95 48 0 8 102 12 106 7.98e-32 108
Msa1277690 AT3G55890.3 51.546 97 46 1 1 97 6 101 1.55e-31 107
Msa1277690 AT3G55890.2 51.546 97 46 1 1 97 6 101 1.55e-31 107
Msa1277690 AT2G40110.1 48.485 99 51 0 8 106 12 110 1.76e-31 108
Msa1277690 AT3G08990.2 49.020 102 51 1 1 102 6 106 3.42e-31 107
Msa1277690 AT3G08990.1 49.020 102 51 1 1 102 6 106 3.42e-31 107
Msa1277690 AT3G08990.3 49.020 102 51 1 1 102 6 106 3.42e-31 107
Msa1277690 AT2G40110.2 48.913 92 47 0 8 99 12 103 3.70e-30 103
Msa1277690 AT2G40110.4 43.836 73 41 0 8 80 12 84 5.40e-21 80.5
Msa1277690 AT2G40110.3 43.836 73 41 0 8 80 12 84 5.40e-21 80.5

Find 41 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTTCCTCATAAGCTTTA+AGG 0.102549 8_3:+13418259 None:intergenic
TGAGAAGTTTAAGATTGTTT+TGG 0.258269 8_3:-13418208 Msa1277690:CDS
AAAGTTCACCTGAAAATCTT+TGG 0.258418 8_3:+13419163 None:intergenic
ATAAGCTGTCTATCTTCTTT+AGG 0.260634 8_3:+13418348 None:intergenic
TCATGTCAGAGTTTGATAAT+TGG 0.315808 8_3:+13419432 None:intergenic
TTTAACATTAATTGTTCATT+GGG 0.318516 8_3:-13418160 Msa1277690:three_prime_UTR
ATCATTAATGGCCGATTTGA+TGG 0.329137 8_3:-13419249 Msa1277690:exon
ACCATTCAACAATTAACATT+AGG 0.330744 8_3:+13417996 None:intergenic
CCATTCAACAATTAACATTA+GGG 0.341166 8_3:+13417997 None:intergenic
AAAGAAGATTCCAAAAGAAT+TGG 0.353208 8_3:+13419536 None:intergenic
TTTGTAAATGTTGCTTGATC+AGG 0.356684 8_3:-13418093 Msa1277690:three_prime_UTR
CATGGAAAGCAACAAGGTTC+TGG 0.376925 8_3:+13419198 None:intergenic
GGAGCTAAGGTGGCAGTGTT+AGG 0.379271 8_3:-13419278 Msa1277690:five_prime_UTR
TGAGGAAACACAGAAGTATA+AGG 0.390368 8_3:-13418247 Msa1277690:CDS
AAACTCTGACATGAAAGAAT+TGG 0.393192 8_3:-13419423 Msa1277690:five_prime_UTR
CCCTAATGTTAATTGTTGAA+TGG 0.397010 8_3:-13417997 Msa1277690:three_prime_UTR
GAAATACCTTAAAGCTTATG+AGG 0.433394 8_3:-13418265 Msa1277690:CDS
TCAGAGTTTGATAATTGGTT+TGG 0.456833 8_3:+13419437 None:intergenic
GCAAAGAATATGAATGAGAA+GGG 0.486362 8_3:+13419504 None:intergenic
GGCCGATTTGATGGGATCAC+GGG 0.488237 8_3:-13419240 Msa1277690:CDS
TGCCCGTGATCCCATCAAAT+CGG 0.500160 8_3:+13419238 None:intergenic
CAACAAACCATCTCTGTACA+AGG 0.503088 8_3:+13417916 None:intergenic
TTGTAAATGTTGCTTGATCA+GGG 0.506988 8_3:-13418092 Msa1277690:three_prime_UTR
TTATACTAATGTTGTACTTG+TGG 0.506997 8_3:+13418132 None:intergenic
TTATTAGCCTTGTACAGAGA+TGG 0.518921 8_3:-13417923 Msa1277690:three_prime_UTR
GATGTTTATTGTTCTGATTG+TGG 0.528378 8_3:-13418303 Msa1277690:CDS
TCATTAATGGCCGATTTGAT+GGG 0.534012 8_3:-13419248 Msa1277690:exon
TGGCCGATTTGATGGGATCA+CGG 0.537450 8_3:-13419241 Msa1277690:CDS
TATGTTTAACAGGCAAGCAA+TGG 0.540111 8_3:-13418414 Msa1277690:intron
CTTTGGAAACAATATCATCA+TGG 0.545782 8_3:+13419180 None:intergenic
AGCAAAGAATATGAATGAGA+AGG 0.555819 8_3:+13419503 None:intergenic
TCTGATTGTGGAGAAGAACT+TGG 0.556503 8_3:-13418291 Msa1277690:CDS
ATTGTGGAGAAGAACTTGGT+TGG 0.558548 8_3:-13418287 Msa1277690:CDS
GAAGATAGACAGCTTATGAC+TGG 0.563935 8_3:-13418342 Msa1277690:CDS
TAATGTATGAGTAGGAGCTA+AGG 0.581152 8_3:-13419291 Msa1277690:intron
TGTAAATGTTGCTTGATCAG+GGG 0.602297 8_3:-13418091 Msa1277690:three_prime_UTR
GAAACACAGAAGTATAAGGA+AGG 0.612715 8_3:-13418243 Msa1277690:CDS
TGTATGAGTAGGAGCTAAGG+TGG 0.620024 8_3:-13419288 Msa1277690:intron
TATCATCATGGAAAGCAACA+AGG 0.636612 8_3:+13419192 None:intergenic
TTAACATTAATTGTTCATTG+GGG 0.648404 8_3:-13418159 Msa1277690:three_prime_UTR
CATTCAACAATTAACATTAG+GGG 0.686208 8_3:+13417998 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGTATATAAAAGAAAA+AGG + chr8_3:13418108-13418127 None:intergenic 10.0%
!!! AAAAATTTGTTTAAATCAAA+TGG - chr8_3:13418453-13418472 Msa1277690:intron 10.0%
!!! AATTTACAATATGATTTTTT+TGG + chr8_3:13418864-13418883 None:intergenic 10.0%
!!! TTAATTTGTTGAATATTAAT+TGG - chr8_3:13418961-13418980 Msa1277690:intron 10.0%
!!! AAAAAGTATATAAAAGAAAA+AGG + chr8_3:13418108-13418127 None:intergenic 10.0%
!!! AAAAATTTGTTTAAATCAAA+TGG - chr8_3:13418453-13418472 Msa1277690:intron 10.0%
!!! AATTTACAATATGATTTTTT+TGG + chr8_3:13418864-13418883 None:intergenic 10.0%
!!! TTAATTTGTTGAATATTAAT+TGG - chr8_3:13418961-13418980 Msa1277690:intron 10.0%
!! ATATTATTTAATGTATGAGT+AGG - chr8_3:13418162-13418181 Msa1277690:three_prime_UTR 15.0%
!!! AATTTTTTCTCTAAATCTAA+CGG + chr8_3:13418440-13418459 None:intergenic 15.0%
!!! TTTTAACATTAATTGTTCAT+TGG - chr8_3:13419300-13419319 Msa1277690:intron 15.0%
!! TTTAACATTAATTGTTCATT+GGG - chr8_3:13419301-13419320 Msa1277690:intron 15.0%
!!! TTTTATTCACTCAAAAAAAT+TGG - chr8_3:13419404-13419423 Msa1277690:five_prime_UTR 15.0%
!! ATATTATTTAATGTATGAGT+AGG - chr8_3:13418162-13418181 Msa1277690:three_prime_UTR 15.0%
!!! AATTTTTTCTCTAAATCTAA+CGG + chr8_3:13418440-13418459 None:intergenic 15.0%
!!! TTTTAACATTAATTGTTCAT+TGG - chr8_3:13419300-13419319 Msa1277690:intron 15.0%
!! TTTAACATTAATTGTTCATT+GGG - chr8_3:13419301-13419320 Msa1277690:intron 15.0%
!!! TTTTATTCACTCAAAAAAAT+TGG - chr8_3:13419404-13419423 Msa1277690:five_prime_UTR 15.0%
!! AAGAATTGGACAAAAAATAT+TGG + chr8_3:13417914-13417933 None:intergenic 20.0%
!!! TATTTTTTGTCCAATTCTTT+TGG - chr8_3:13417915-13417934 Msa1277690:three_prime_UTR 20.0%
!! AGTATATAAAAGAAAAAGGT+TGG + chr8_3:13418104-13418123 None:intergenic 20.0%
!! GTTAGGAAAAAAATCATTAA+TGG - chr8_3:13418200-13418219 Msa1277690:CDS 20.0%
!!! ACTTTTCTTTCTTTCAATTT+TGG - chr8_3:13418316-13418335 Msa1277690:CDS 20.0%
!! TTAACATTAATTGTTCATTG+GGG - chr8_3:13419302-13419321 Msa1277690:intron 20.0%
!! AAGAATTGGACAAAAAATAT+TGG + chr8_3:13417914-13417933 None:intergenic 20.0%
!!! TATTTTTTGTCCAATTCTTT+TGG - chr8_3:13417915-13417934 Msa1277690:three_prime_UTR 20.0%
!! AGTATATAAAAGAAAAAGGT+TGG + chr8_3:13418104-13418123 None:intergenic 20.0%
!! GTTAGGAAAAAAATCATTAA+TGG - chr8_3:13418200-13418219 Msa1277690:CDS 20.0%
!!! ACTTTTCTTTCTTTCAATTT+TGG - chr8_3:13418316-13418335 Msa1277690:CDS 20.0%
!! TTAACATTAATTGTTCATTG+GGG - chr8_3:13419302-13419321 Msa1277690:intron 20.0%
! AAAGAAGATTCCAAAAGAAT+TGG + chr8_3:13417928-13417947 None:intergenic 25.0%
!! TATTGTTTCCAAAGATTTTC+AGG - chr8_3:13418290-13418309 Msa1277690:CDS 25.0%
!! TATTAGATGATCCATTTTCA+TGG + chr8_3:13418389-13418408 None:intergenic 25.0%
! AGAGAAGTGAAATTAATTTC+AGG + chr8_3:13418674-13418693 None:intergenic 25.0%
! ATTAATTTCACTTCTCTCAA+TGG - chr8_3:13418677-13418696 Msa1277690:intron 25.0%
! TTCATTTCTTCTGATCAATT+CGG + chr8_3:13418755-13418774 None:intergenic 25.0%
! AGAAGAAATGAAACAATCAT+TGG - chr8_3:13418763-13418782 Msa1277690:intron 25.0%
! TTGAATATTAATTGGACAAG+AGG - chr8_3:13418969-13418988 Msa1277690:intron 25.0%
! TGAATATTAATTGGACAAGA+GGG - chr8_3:13418970-13418989 Msa1277690:intron 25.0%
!! TAACCTCAAAAGATTTTCAA+AGG - chr8_3:13419023-13419042 Msa1277690:intron 25.0%
!!! TAACCTTTGAAAATCTTTTG+AGG + chr8_3:13419029-13419048 None:intergenic 25.0%
! TTTCAAAGGTTATGTTTAAC+AGG - chr8_3:13419037-13419056 Msa1277690:intron 25.0%
!!! TGAGAAGTTTAAGATTGTTT+TGG - chr8_3:13419253-13419272 Msa1277690:exon 25.0%
!!! GAGAAGTTTAAGATTGTTTT+GGG - chr8_3:13419254-13419273 Msa1277690:exon 25.0%
!!! TTTAAGATTGTTTTGGGAAA+TGG - chr8_3:13419260-13419279 Msa1277690:exon 25.0%
!!! TTAAGATTGTTTTGGGAAAT+GGG - chr8_3:13419261-13419280 Msa1277690:exon 25.0%
! TTATACTAATGTTGTACTTG+TGG + chr8_3:13419332-13419351 None:intergenic 25.0%
! CATTCAACAATTAACATTAG+GGG + chr8_3:13419466-13419485 None:intergenic 25.0%
! CCATTCAACAATTAACATTA+GGG + chr8_3:13419467-13419486 None:intergenic 25.0%
! ACCATTCAACAATTAACATT+AGG + chr8_3:13419468-13419487 None:intergenic 25.0%
!! TCTTTTGTACAATATGAACA+AGG + chr8_3:13419491-13419510 None:intergenic 25.0%
! AAAGAAGATTCCAAAAGAAT+TGG + chr8_3:13417928-13417947 None:intergenic 25.0%
!! TATTGTTTCCAAAGATTTTC+AGG - chr8_3:13418290-13418309 Msa1277690:CDS 25.0%
!! TATTAGATGATCCATTTTCA+TGG + chr8_3:13418389-13418408 None:intergenic 25.0%
! AGAGAAGTGAAATTAATTTC+AGG + chr8_3:13418674-13418693 None:intergenic 25.0%
! ATTAATTTCACTTCTCTCAA+TGG - chr8_3:13418677-13418696 Msa1277690:intron 25.0%
! TTCATTTCTTCTGATCAATT+CGG + chr8_3:13418755-13418774 None:intergenic 25.0%
! AGAAGAAATGAAACAATCAT+TGG - chr8_3:13418763-13418782 Msa1277690:intron 25.0%
! TTGAATATTAATTGGACAAG+AGG - chr8_3:13418969-13418988 Msa1277690:intron 25.0%
! TGAATATTAATTGGACAAGA+GGG - chr8_3:13418970-13418989 Msa1277690:intron 25.0%
!! TAACCTCAAAAGATTTTCAA+AGG - chr8_3:13419023-13419042 Msa1277690:intron 25.0%
!!! TAACCTTTGAAAATCTTTTG+AGG + chr8_3:13419029-13419048 None:intergenic 25.0%
! TTTCAAAGGTTATGTTTAAC+AGG - chr8_3:13419037-13419056 Msa1277690:intron 25.0%
!!! TGAGAAGTTTAAGATTGTTT+TGG - chr8_3:13419253-13419272 Msa1277690:exon 25.0%
!!! GAGAAGTTTAAGATTGTTTT+GGG - chr8_3:13419254-13419273 Msa1277690:exon 25.0%
!!! TTTAAGATTGTTTTGGGAAA+TGG - chr8_3:13419260-13419279 Msa1277690:exon 25.0%
!!! TTAAGATTGTTTTGGGAAAT+GGG - chr8_3:13419261-13419280 Msa1277690:exon 25.0%
! TTATACTAATGTTGTACTTG+TGG + chr8_3:13419332-13419351 None:intergenic 25.0%
! CATTCAACAATTAACATTAG+GGG + chr8_3:13419466-13419485 None:intergenic 25.0%
! CCATTCAACAATTAACATTA+GGG + chr8_3:13419467-13419486 None:intergenic 25.0%
! ACCATTCAACAATTAACATT+AGG + chr8_3:13419468-13419487 None:intergenic 25.0%
!! TCTTTTGTACAATATGAACA+AGG + chr8_3:13419491-13419510 None:intergenic 25.0%
GCAAAGAATATGAATGAGAA+GGG + chr8_3:13417960-13417979 None:intergenic 30.0%
AGCAAAGAATATGAATGAGA+AGG + chr8_3:13417961-13417980 None:intergenic 30.0%
! TCAGAGTTTGATAATTGGTT+TGG + chr8_3:13418027-13418046 None:intergenic 30.0%
! TCATGTCAGAGTTTGATAAT+TGG + chr8_3:13418032-13418051 None:intergenic 30.0%
AAACTCTGACATGAAAGAAT+TGG - chr8_3:13418038-13418057 Msa1277690:three_prime_UTR 30.0%
! CTTTGGAAACAATATCATCA+TGG + chr8_3:13418284-13418303 None:intergenic 30.0%
AAAGTTCACCTGAAAATCTT+TGG + chr8_3:13418301-13418320 None:intergenic 30.0%
AAACGATTCATCCATGAAAA+TGG - chr8_3:13418375-13418394 Msa1277690:CDS 30.0%
AAATGGATCATCTAATACTG+TGG - chr8_3:13418392-13418411 Msa1277690:CDS 30.0%
GCTTTCATCGTGATTATATT+GGG + chr8_3:13418637-13418656 None:intergenic 30.0%
AGCTTTCATCGTGATTATAT+TGG + chr8_3:13418638-13418657 None:intergenic 30.0%
TAAAGGAAATGGACAAAATC+TGG + chr8_3:13418818-13418837 None:intergenic 30.0%
! AGATTTTGTCCATTTCCTTT+AGG - chr8_3:13418817-13418836 Msa1277690:intron 30.0%
!!! TTGGTTTTAATTTAACCCTC+TGG + chr8_3:13418845-13418864 None:intergenic 30.0%
! TCATGCCATGAACATATTTT+TGG - chr8_3:13419088-13419107 Msa1277690:intron 30.0%
! CATGCCATGAACATATTTTT+GGG - chr8_3:13419089-13419108 Msa1277690:intron 30.0%
ATAAGCTGTCTATCTTCTTT+AGG + chr8_3:13419116-13419135 None:intergenic 30.0%
GATGTTTATTGTTCTGATTG+TGG - chr8_3:13419158-13419177 Msa1277690:intron 30.0%
GAAATACCTTAAAGCTTATG+AGG - chr8_3:13419196-13419215 Msa1277690:CDS 30.0%
! TTTGTAAATGTTGCTTGATC+AGG - chr8_3:13419368-13419387 Msa1277690:intron 30.0%
! TTGTAAATGTTGCTTGATCA+GGG - chr8_3:13419369-13419388 Msa1277690:intron 30.0%
CCCTAATGTTAATTGTTGAA+TGG - chr8_3:13419464-13419483 Msa1277690:five_prime_UTR 30.0%
GCAAAGAATATGAATGAGAA+GGG + chr8_3:13417960-13417979 None:intergenic 30.0%
AGCAAAGAATATGAATGAGA+AGG + chr8_3:13417961-13417980 None:intergenic 30.0%
! TCAGAGTTTGATAATTGGTT+TGG + chr8_3:13418027-13418046 None:intergenic 30.0%
! TCATGTCAGAGTTTGATAAT+TGG + chr8_3:13418032-13418051 None:intergenic 30.0%
AAACTCTGACATGAAAGAAT+TGG - chr8_3:13418038-13418057 Msa1277690:three_prime_UTR 30.0%
! CTTTGGAAACAATATCATCA+TGG + chr8_3:13418284-13418303 None:intergenic 30.0%
AAAGTTCACCTGAAAATCTT+TGG + chr8_3:13418301-13418320 None:intergenic 30.0%
AAACGATTCATCCATGAAAA+TGG - chr8_3:13418375-13418394 Msa1277690:CDS 30.0%
AAATGGATCATCTAATACTG+TGG - chr8_3:13418392-13418411 Msa1277690:CDS 30.0%
GCTTTCATCGTGATTATATT+GGG + chr8_3:13418637-13418656 None:intergenic 30.0%
AGCTTTCATCGTGATTATAT+TGG + chr8_3:13418638-13418657 None:intergenic 30.0%
TAAAGGAAATGGACAAAATC+TGG + chr8_3:13418818-13418837 None:intergenic 30.0%
! AGATTTTGTCCATTTCCTTT+AGG - chr8_3:13418817-13418836 Msa1277690:intron 30.0%
!!! TTGGTTTTAATTTAACCCTC+TGG + chr8_3:13418845-13418864 None:intergenic 30.0%
! TCATGCCATGAACATATTTT+TGG - chr8_3:13419088-13419107 Msa1277690:intron 30.0%
! CATGCCATGAACATATTTTT+GGG - chr8_3:13419089-13419108 Msa1277690:intron 30.0%
ATAAGCTGTCTATCTTCTTT+AGG + chr8_3:13419116-13419135 None:intergenic 30.0%
GATGTTTATTGTTCTGATTG+TGG - chr8_3:13419158-13419177 Msa1277690:intron 30.0%
GAAATACCTTAAAGCTTATG+AGG - chr8_3:13419196-13419215 Msa1277690:CDS 30.0%
! TTTGTAAATGTTGCTTGATC+AGG - chr8_3:13419368-13419387 Msa1277690:intron 30.0%
! TTGTAAATGTTGCTTGATCA+GGG - chr8_3:13419369-13419388 Msa1277690:intron 30.0%
CCCTAATGTTAATTGTTGAA+TGG - chr8_3:13419464-13419483 Msa1277690:five_prime_UTR 30.0%
TAATGTATGAGTAGGAGCTA+AGG - chr8_3:13418170-13418189 Msa1277690:three_prime_UTR 35.0%
!! ATCATTAATGGCCGATTTGA+TGG - chr8_3:13418212-13418231 Msa1277690:CDS 35.0%
!! TCATTAATGGCCGATTTGAT+GGG - chr8_3:13418213-13418232 Msa1277690:CDS 35.0%
TATCATCATGGAAAGCAACA+AGG + chr8_3:13418272-13418291 None:intergenic 35.0%
! AAAATGTCTTCTAGTGGGTA+TGG + chr8_3:13418530-13418549 None:intergenic 35.0%
!!! ACCCACTAGAAGACATTTTT+TGG - chr8_3:13418531-13418550 Msa1277690:intron 35.0%
CCCAAAAAATGTCTTCTAGT+GGG + chr8_3:13418535-13418554 None:intergenic 35.0%
!!! CCCACTAGAAGACATTTTTT+GGG - chr8_3:13418532-13418551 Msa1277690:intron 35.0%
ACCCAAAAAATGTCTTCTAG+TGG + chr8_3:13418536-13418555 None:intergenic 35.0%
TGCTTAACGAGCTTCAATTA+AGG - chr8_3:13418729-13418748 Msa1277690:intron 35.0%
ATATTAATTGGACAAGAGGG+TGG - chr8_3:13418973-13418992 Msa1277690:intron 35.0%
TATGTTTAACAGGCAAGCAA+TGG - chr8_3:13419047-13419066 Msa1277690:intron 35.0%
AGGTCCCAAAAATATGTTCA+TGG + chr8_3:13419096-13419115 None:intergenic 35.0%
GTGTTTCCTCATAAGCTTTA+AGG + chr8_3:13419205-13419224 None:intergenic 35.0%
! TGAGGAAACACAGAAGTATA+AGG - chr8_3:13419214-13419233 Msa1277690:CDS 35.0%
! GAAACACAGAAGTATAAGGA+AGG - chr8_3:13419218-13419237 Msa1277690:CDS 35.0%
! TGTAAATGTTGCTTGATCAG+GGG - chr8_3:13419370-13419389 Msa1277690:intron 35.0%
!! TTATTAGCCTTGTACAGAGA+TGG - chr8_3:13419538-13419557 Msa1277690:five_prime_UTR 35.0%
TAATGTATGAGTAGGAGCTA+AGG - chr8_3:13418170-13418189 Msa1277690:three_prime_UTR 35.0%
!! ATCATTAATGGCCGATTTGA+TGG - chr8_3:13418212-13418231 Msa1277690:CDS 35.0%
!! TCATTAATGGCCGATTTGAT+GGG - chr8_3:13418213-13418232 Msa1277690:CDS 35.0%
TATCATCATGGAAAGCAACA+AGG + chr8_3:13418272-13418291 None:intergenic 35.0%
! AAAATGTCTTCTAGTGGGTA+TGG + chr8_3:13418530-13418549 None:intergenic 35.0%
!!! ACCCACTAGAAGACATTTTT+TGG - chr8_3:13418531-13418550 Msa1277690:intron 35.0%
CCCAAAAAATGTCTTCTAGT+GGG + chr8_3:13418535-13418554 None:intergenic 35.0%
!!! CCCACTAGAAGACATTTTTT+GGG - chr8_3:13418532-13418551 Msa1277690:intron 35.0%
ACCCAAAAAATGTCTTCTAG+TGG + chr8_3:13418536-13418555 None:intergenic 35.0%
TGCTTAACGAGCTTCAATTA+AGG - chr8_3:13418729-13418748 Msa1277690:intron 35.0%
ATATTAATTGGACAAGAGGG+TGG - chr8_3:13418973-13418992 Msa1277690:intron 35.0%
TATGTTTAACAGGCAAGCAA+TGG - chr8_3:13419047-13419066 Msa1277690:intron 35.0%
AGGTCCCAAAAATATGTTCA+TGG + chr8_3:13419096-13419115 None:intergenic 35.0%
GTGTTTCCTCATAAGCTTTA+AGG + chr8_3:13419205-13419224 None:intergenic 35.0%
! TGAGGAAACACAGAAGTATA+AGG - chr8_3:13419214-13419233 Msa1277690:CDS 35.0%
! GAAACACAGAAGTATAAGGA+AGG - chr8_3:13419218-13419237 Msa1277690:CDS 35.0%
! TGTAAATGTTGCTTGATCAG+GGG - chr8_3:13419370-13419389 Msa1277690:intron 35.0%
!! TTATTAGCCTTGTACAGAGA+TGG - chr8_3:13419538-13419557 Msa1277690:five_prime_UTR 35.0%
AATCAAATGGTTCCTACCAC+AGG - chr8_3:13418466-13418485 Msa1277690:intron 40.0%
ATCAAATGGTTCCTACCACA+GGG - chr8_3:13418467-13418486 Msa1277690:intron 40.0%
TAAGTAGAAGAACATCCCTG+TGG + chr8_3:13418485-13418504 None:intergenic 40.0%
CAGGGATGTTCTTCTACTTA+TGG - chr8_3:13418485-13418504 Msa1277690:intron 40.0%
TGGGTATGGATGAACGAAAT+TGG + chr8_3:13418516-13418535 None:intergenic 40.0%
! CATTTCCTTTAGGAACCAGA+GGG - chr8_3:13418827-13418846 Msa1277690:intron 40.0%
! TTTAACCCTCTGGTTCCTAA+AGG + chr8_3:13418835-13418854 None:intergenic 40.0%
GAAGATAGACAGCTTATGAC+TGG - chr8_3:13419119-13419138 Msa1277690:intron 40.0%
TCTGATTGTGGAGAAGAACT+TGG - chr8_3:13419170-13419189 Msa1277690:intron 40.0%
ATTGTGGAGAAGAACTTGGT+TGG - chr8_3:13419174-13419193 Msa1277690:CDS 40.0%
CAACAAACCATCTCTGTACA+AGG + chr8_3:13419548-13419567 None:intergenic 40.0%
AATCAAATGGTTCCTACCAC+AGG - chr8_3:13418466-13418485 Msa1277690:intron 40.0%
ATCAAATGGTTCCTACCACA+GGG - chr8_3:13418467-13418486 Msa1277690:intron 40.0%
TAAGTAGAAGAACATCCCTG+TGG + chr8_3:13418485-13418504 None:intergenic 40.0%
CAGGGATGTTCTTCTACTTA+TGG - chr8_3:13418485-13418504 Msa1277690:intron 40.0%
TGGGTATGGATGAACGAAAT+TGG + chr8_3:13418516-13418535 None:intergenic 40.0%
! CATTTCCTTTAGGAACCAGA+GGG - chr8_3:13418827-13418846 Msa1277690:intron 40.0%
! TTTAACCCTCTGGTTCCTAA+AGG + chr8_3:13418835-13418854 None:intergenic 40.0%
GAAGATAGACAGCTTATGAC+TGG - chr8_3:13419119-13419138 Msa1277690:intron 40.0%
TCTGATTGTGGAGAAGAACT+TGG - chr8_3:13419170-13419189 Msa1277690:intron 40.0%
ATTGTGGAGAAGAACTTGGT+TGG - chr8_3:13419174-13419193 Msa1277690:CDS 40.0%
CAACAAACCATCTCTGTACA+AGG + chr8_3:13419548-13419567 None:intergenic 40.0%
TGTATGAGTAGGAGCTAAGG+TGG - chr8_3:13418173-13418192 Msa1277690:three_prime_UTR 45.0%
CATGGAAAGCAACAAGGTTC+TGG + chr8_3:13418266-13418285 None:intergenic 45.0%
! ACTGTGGAATAGTGTTGCTG+CGG - chr8_3:13418408-13418427 Msa1277690:intron 45.0%
TAGAAGAACATCCCTGTGGT+AGG + chr8_3:13418481-13418500 None:intergenic 45.0%
! CCTCTGGTTCCTAAAGGAAA+TGG + chr8_3:13418829-13418848 None:intergenic 45.0%
! CCATTTCCTTTAGGAACCAG+AGG - chr8_3:13418826-13418845 Msa1277690:intron 45.0%
TAATTGGACAAGAGGGTGGT+TGG - chr8_3:13418977-13418996 Msa1277690:intron 45.0%
TGTATGAGTAGGAGCTAAGG+TGG - chr8_3:13418173-13418192 Msa1277690:three_prime_UTR 45.0%
CATGGAAAGCAACAAGGTTC+TGG + chr8_3:13418266-13418285 None:intergenic 45.0%
! ACTGTGGAATAGTGTTGCTG+CGG - chr8_3:13418408-13418427 Msa1277690:intron 45.0%
TAGAAGAACATCCCTGTGGT+AGG + chr8_3:13418481-13418500 None:intergenic 45.0%
! CCTCTGGTTCCTAAAGGAAA+TGG + chr8_3:13418829-13418848 None:intergenic 45.0%
! CCATTTCCTTTAGGAACCAG+AGG - chr8_3:13418826-13418845 Msa1277690:intron 45.0%
TAATTGGACAAGAGGGTGGT+TGG - chr8_3:13418977-13418996 Msa1277690:intron 45.0%
!! TGGCCGATTTGATGGGATCA+CGG - chr8_3:13418220-13418239 Msa1277690:CDS 50.0%
TGCCCGTGATCCCATCAAAT+CGG + chr8_3:13418226-13418245 None:intergenic 50.0%
!! TGGCCGATTTGATGGGATCA+CGG - chr8_3:13418220-13418239 Msa1277690:CDS 50.0%
TGCCCGTGATCCCATCAAAT+CGG + chr8_3:13418226-13418245 None:intergenic 50.0%
GGAGCTAAGGTGGCAGTGTT+AGG - chr8_3:13418183-13418202 Msa1277690:exon 55.0%
!! GGCCGATTTGATGGGATCAC+GGG - chr8_3:13418221-13418240 Msa1277690:CDS 55.0%
GGAGCTAAGGTGGCAGTGTT+AGG - chr8_3:13418183-13418202 Msa1277690:exon 55.0%
!! GGCCGATTTGATGGGATCAC+GGG - chr8_3:13418221-13418240 Msa1277690:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 13417909 13419574 13417909 ID=Msa1277690;Name=Msa1277690
chr8_3 mRNA 13417909 13419574 13417909 ID=Msa1277690-mRNA-1;Parent=Msa1277690;Name=Msa1277690-mRNA-1;_AED=0.24;_eAED=0.24;_QI=211|1|1|1|0.5|0.33|3|288|106
chr8_3 exon 13417909 13418424 13417909 ID=Msa1277690-mRNA-1:exon:5316;Parent=Msa1277690-mRNA-1
chr8_3 exon 13419172 13419299 13419172 ID=Msa1277690-mRNA-1:exon:5315;Parent=Msa1277690-mRNA-1
chr8_3 exon 13419399 13419574 13419399 ID=Msa1277690-mRNA-1:exon:5314;Parent=Msa1277690-mRNA-1
chr8_3 five_prime_UTR 13419399 13419574 13419399 ID=Msa1277690-mRNA-1:five_prime_utr;Parent=Msa1277690-mRNA-1
chr8_3 five_prime_UTR 13419265 13419299 13419265 ID=Msa1277690-mRNA-1:five_prime_utr;Parent=Msa1277690-mRNA-1
chr8_3 CDS 13419172 13419264 13419172 ID=Msa1277690-mRNA-1:cds;Parent=Msa1277690-mRNA-1
chr8_3 CDS 13418197 13418424 13418197 ID=Msa1277690-mRNA-1:cds;Parent=Msa1277690-mRNA-1
chr8_3 three_prime_UTR 13417909 13418196 13417909 ID=Msa1277690-mRNA-1:three_prime_utr;Parent=Msa1277690-mRNA-1
Gene Sequence

>Msa1277690

ATGGCCGATTTGATGGGATCACGGGCATACTGCTGCTTCAAGTGCCAGAACCTTGTTGCTTTCCATGATGATATTGTTTCCAAAGATTTTCAGGCAAGCAATGGAAGAGCTTTTCTGTTTTCTCATGCCATGAACATATTTTTGGGACCTAAAGAAGATAGACAGCTTATGACTGGTCTTCACACAGTTGCTGATGTTTATTGTTCTGATTGTGGAGAAGAACTTGGTTGGAAATACCTTAAAGCTTATGAGGAAACACAGAAGTATAAGGAAGGAAAATGTGTGCTTGAGAAGTTTAAGATTGTTTTGGGAAATGGGTAG

Protein sequence

>Msa1277690

MADLMGSRAYCCFKCQNLVAFHDDIVSKDFQASNGRAFLFSHAMNIFLGPKEDRQLMTGLHTVADVYCSDCGEELGWKYLKAYEETQKYKEGKCVLEKFKIVLGNG*